Pregenerated sensors for LRIF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056260Ensembl transcript IDs: ENSMUST00000098750.5, ENSMUST00000098751.10, ENSMUST00000106736.3, ENSMUST00000127003.8, ENSMUST00000130105.2, ENSMUST00000150513.2, ENSMUST00000154973.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTTGTTAACGTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCTCCAGTGGGGATCCCTaGCAGGTGGGAGAGAACTAC | + |
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Preference number: 2 (lower is better) Translates to: VVNVMTLQWFYTRFGIISSSGDP*QVGENY Trigger: GTAGTTCTCTCCCACCTGTCAGGGATCCCCACTGGA...GGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGACGTTAACAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| 3UTR CAA 90 bp | CAAAATACTTCATGTAGGTTATTGACAAGTCATGACTCAACCCTTTaGGGAACTCGTTTCATATACAAAGTCACTTTCATAGCACCTTTA | + |
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Preference number: 2 (lower is better) Translates to: QNTSCRLLTSHDSTL*GTRFIYKVTFIAPL Trigger: TAAAGGTGCTATGAAAGTGACTTTGTATATGAAACGAGTTCCCAAAAGGGTTGAGTCATGACTTGTCAATAACCTACATGAAGTATTTTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| 3UTR TCA 72 bp | TATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTaGCAGGTGGGAGAGAACTACTATAATAATATAAGT | + |
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Preference number: 3 (lower is better) Translates to: YHLQFQASSGDP*QVGENYYNNIS Trigger: ACTTATATTATTATAGTAGTTCTCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| CDS-3UTR TCA 90 bp | TTGGTATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGATCAAACCATGAGACATaGCTGGAGACTGAACTACTG | + |
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Preference number: 4 (lower is better) Translates to: LVSSPVSGIQWGSLTGGRSNHET*LETELL Trigger: CAGTAGTTCAGTCTCCAGTCATGTCTCATGGTTTGA...TCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATACCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR TCA 90 bp | TTGGTATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGACCAAGTATCTTTTGCTaGACCAAAGGAGGCAAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: LVSSPVSGIQWGSLTGGRPSIFC*TKGGKD Trigger: ATCCTTGCCTCCTTTGGTTCAGCAAAAGATACTTGG...TCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATACCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR TCA 90 bp | TCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAGAACTACTCATACTGCGTCTGTaGTTCTTGGTCTCTGAAAAC | + |
|
Preference number: 4 (lower is better) Translates to: SSPVSGIQWGSLTGGRELLILRL*FLVSEN Trigger: GTTTTCAGAGACCAAGAATCACAGACGCAGTATGAG...TAGTTCTCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR GCA 90 bp | TTGGTATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAAGGCAATTGAACAGATaGACTTGTGGAAGAGCTGGA | + |
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Preference number: 4 (lower is better) Translates to: LVSSPVSGIQWGSLTGGRRQLNR*TCGRAG Trigger: TCCAGCTCTTCCACAAGTGCATCTGTTCAATTGCCT...TCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATACCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | TTGGTATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAGAACAGATGCACTTGTaGAAGAGCTGGAAATCTGAG | + |
|
Preference number: 4 (lower is better) Translates to: LVSSPVSGIQWGSLTGGREQMHL*KSWKSE Trigger: CTCAGATTTCCAGCTCTTCCACAAGTGCATCTGTTC...TCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATACCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | TTGGTATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGACTCTTAGATTGGCCATaGAAGCAAGCTGGGAATTTG | + |
|
Preference number: 4 (lower is better) Translates to: LVSSPVSGIQWGSLTGGRLLDWP*KQAGNL Trigger: CAAATTCCCAGCTTGCTTCCATGGCCAATCTAAGAG...TCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATACCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR TCA 90 bp | TTGGTATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAGACATGACTGGAGACTaGACTACTGGGATAAGATTT | + |
|
Preference number: 4 (lower is better) Translates to: LVSSPVSGIQWGSLTGGRDMTGD*TTGIRF Trigger: AAATCTTATCCCAGTAGTTCAGTCTCCAGTCATGTC...TCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATACCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | TCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAGAACTATACATAAACAACTGTTaGTATTTGGGAGGCCTCAAC | + |
|
Preference number: 4 (lower is better) Translates to: SSPVSGIQWGSLTGGRELYINNC*YLGGLN Trigger: GTTGAGGCCTCCCAAATACCAACAGTTGTTTATGTA...TAGTTCTCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | TTGGTATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGATCCCTGGTTGTACTATaGCTTGTGACAATGTTATGT | + |
|
Preference number: 4 (lower is better) Translates to: LVSSPVSGIQWGSLTGGRSLVVL*LVTMLC Trigger: ACATAACATTGTCACAAGCCATAGTACAACCAGGGA...TCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATACCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| CDS-3UTR GCA 90 bp | TCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAGAACTACTTCACCACAATGTTTaGATCTTTGTAAGAACTACT | + |
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Preference number: 4 (lower is better) Translates to: SSPVSGIQWGSLTGGRELLHHNV*IFVRTT Trigger: AGTAGTTCTTACAAAGATGCAAACATTGTGGTGAAG...TAGTTCTCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| CDS-3UTR CCA 90 bp | TCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAGAACTATGTAGCAACATTTGGTaGAATTTGCAAGGTATTGAA | + |
|
Preference number: 4 (lower is better) Translates to: SSPVSGIQWGSLTGGRELCSNIW*NLQGIE Trigger: TTCAATACCTTGCAAATTCCACCAAATGTTGCTACA...TAGTTCTCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | TTGGTATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGATTCTGTAGCAACATTTaGTGGAATTTGCAAGGTATT | + |
|
Preference number: 4 (lower is better) Translates to: LVSSPVSGIQWGSLTGGRFCSNI*WNLQGI Trigger: AATACCTTGCAAATTCCACCAAATGTTGCTACAGAA...TCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATACCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | TTGGTATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAATTTTCTCTATGTTCTaGACGAGATTTCCTTTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: LVSSPVSGIQWGSLTGGRIFSMF*TRFPFL Trigger: CAGAAAAGGAAATCTCGTCCAGAACATAGAGAAAAT...TCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATACCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | GTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGTCTCTGCTCTTAGATTaGCCATGGAAGCAAGCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: VMTLQWFYTRFGIISSFRSLLLD*PWKQAG Trigger: CCCAGCTTGCTTCCATGGCCAATCTAAGAGCAGAGA...CCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | AGTCAAAATACTTCATGTAGGTTATTGACAAGTCATGACTCAACCCTTTTGGGACGAGATTTCCTTTTCTaGGGGCATTCTGTCCTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: SQNTSCRLLTSHDSTLLGRDFLF*GHSVLS Trigger: GGACAGGACAGAATGCCCCCAGAAAAGGAAATCTCG...TCCCAAAAGGGTTGAGTCATGACTTGTCAATAACCTACATGAAGTATTTTGACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR GCA 90 bp | AGTCAAAATACTTCATGTAGGTTATTGACAAGTCATGACTCAACCCTTTTGGGAGAACTACTTGGTACATaGACCCTGAAATACAGCGCG | + |
|
Preference number: 4 (lower is better) Translates to: SQNTSCRLLTSHDSTLLGELLGT*TLKYSA Trigger: CGCGCTGTATTTCAGGGTGCATGTACCAAGTAGTTC...TCCCAAAAGGGTTGAGTCATGACTTGTCAATAACCTACATGAAGTATTTTGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR TCA 90 bp | AGTCAAAATACTTCATGTAGGTTATTGACAAGTCATGACTCAACCCTTTTGGGAGGCTGTAGATACTCCTaGAAAATCGAGTTCACTGGA | + |
|
Preference number: 4 (lower is better) Translates to: SQNTSCRLLTSHDSTLLGGCRYS*KIEFTG Trigger: TCCAGTGAACTCGATTTTTCAGGAGTATCTACAGCC...TCCCAAAAGGGTTGAGTCATGACTTGTCAATAACCTACATGAAGTATTTTGACT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | GTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGACAACTGTTGGTATTTaGGAGGCCTCAACTGTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: VMTLQWFYTRFGIISSFRTTVGI*EASTVP Trigger: AGGAACAGTTGAGGCCTCCCAAATACCAACAGTTGT...CCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | GTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGAAAAATCGAGTTCACTaGAGCAGCTTGAGGATGCTG | + |
|
Preference number: 4 (lower is better) Translates to: VMTLQWFYTRFGIISSFRKNRVH*SSLRML Trigger: CAGCATCCTCAAGCTGCTCCAGTGAACTCGATTTTT...CCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR TCA 90 bp | GTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGGAATTTGCAAGGTATTaGATGTCACTGGTTTGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: VMTLQWFYTRFGIISSFREFARY*MSLVWG Trigger: ACCCCAAACCAGTGACATTCAATACCTTGCAAATTC...CCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR GCA 90 bp | GTTGTTAACGTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCGATGCCATCTCATACTaGGTCTGTGATTCTTGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: VVNVMTLQWFYTRFGIISDAISY*VCDSWS Trigger: AGACCAAGAATCACAGACGCAGTATGAGATGGCATC...GGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGACGTTAACAAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | CTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGCATCCAGATACTACTGAGAGGTTaGGAACTAGCAACATCAGTT | + |
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Preference number: 4 (lower is better) Translates to: LYSGFIQDLVSSPVSGIQILLRG*ELATSV Trigger: AACTGATGTTGCTAGTTCCCAACCTCTCAGTAGTAT...CTGGATGCCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| CDS-3UTR GCA 90 bp | GTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGTTGAGAAGTAACAGTTaGTGCATCAACAGAGGAACA | + |
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Preference number: 4 (lower is better) Translates to: VMTLQWFYTRFGIISSFRLRSNS*CINRGT Trigger: TGTTCCTCTGTTGATGCAGCAACTGTTACTTCTCAA...CCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | AGTCAAAATACTTCATGTAGGTTATTGACAAGTCATGACTCAACCCTTTTGGGATGGAGACTGAACTACTaGGATAAGATTTCCAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: SQNTSCRLLTSHDSTLLGWRLNY*DKISRR Trigger: TCTTCTGGAAATCTTATCCCAGTAGTTCAGTCTCCA...TCCCAAAAGGGTTGAGTCATGACTTGTCAATAACCTACATGAAGTATTTTGACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | GTTGTTAACGTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCTGCGTCTGTGATTCTTaGTCTCTGAAAACACACTGT | + |
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Preference number: 4 (lower is better) Translates to: VVNVMTLQWFYTRFGIISCVCDS*SLKTHC Trigger: ACAGTGTGTTTTCAGAGACCAAGAATCACAGACGCA...GGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGACGTTAACAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | GTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGTCCCTGGTTGTACTATaGCTTGTGACAATGTTATGT | + |
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Preference number: 4 (lower is better) Translates to: VMTLQWFYTRFGIISSFRSLVVL*LVTMLC Trigger: ACATAACATTGTCACAAGCCATAGTACAACCAGGGA...CCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| CDS-3UTR GCA 90 bp | GTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGAGAAGTAACAGTTGCTaGATCAACAGAGGAACATAT | + |
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Preference number: 4 (lower is better) Translates to: VMTLQWFYTRFGIISSFRRSNSC*INRGTY Trigger: ATATGTTCCTCTGTTGATGCAGCAACTGTTACTTCT...CCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | GTTGTTAACGTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCGCCATGGAAGCAAGCTaGGAATTTGAAAGTGATTTT | + |
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Preference number: 4 (lower is better) Translates to: VVNVMTLQWFYTRFGIISAMEAS*EFESDF Trigger: AAAATCACTTTCAAATTCCCAGCTTGCTTCCATGGC...GGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGACGTTAACAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | GTTGTTAACGTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCATACTACTGAGAGGTTaGGAACTAGCAACATCAGTT | + |
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Preference number: 4 (lower is better) Translates to: VVNVMTLQWFYTRFGIISILLRG*ELATSV Trigger: AACTGATGTTGCTAGTTCCCAACCTCTCAGTAGTAT...GGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGACGTTAACAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| CDS-3UTR TCA 90 bp | GTTGTTAACGTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCGCTGGAATCTTTAAATaGTTCCCAGAAGGCAAAATT | + |
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Preference number: 4 (lower is better) Translates to: VVNVMTLQWFYTRFGIISAGIFK*FPEGKI Trigger: AATTTTGCCTTCTGGGAATCATTTAAAGATTCCAGC...GGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGACGTTAACAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR GCA 90 bp | GTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGCTTCACCACAATGTTTaGATCTTTGTAAGAACTACT | + |
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Preference number: 4 (lower is better) Translates to: VMTLQWFYTRFGIISSFRLHHNV*IFVRTT Trigger: AGTAGTTCTTACAAAGATGCAAACATTGTGGTGAAG...CCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| CDS-3UTR CCA 90 bp | GTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGAATGTTAGAAACTGGTaGTGTAAAATTTCCAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: VMTLQWFYTRFGIISSFRNVRNW*CKISSP Trigger: AGGACTGGAAATTTTACACCACCAGTTTCTAACATT...CCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | GTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGCTGAATGTTAGAAACTaGTGGTGTAAAATTTCCAGT | + |
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Preference number: 4 (lower is better) Translates to: VMTLQWFYTRFGIISSFRLNVRN*WCKISS Trigger: ACTGGAAATTTTACACCACCAGTTTCTAACATTCAG...CCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | GTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGTGTGACAGAAAAAGATaGTCTCTCCACTTTTTCATT | + |
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Preference number: 4 (lower is better) Translates to: VMTLQWFYTRFGIISSFRCDRKR*SLHFFI Trigger: AATGAAAAAGTGGAGAGACCATCTTTTTCTGTCACA...CCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CCA 90 bp | AGTCAAAATACTTCATGTAGGTTATTGACAAGTCATGACTCAACCCTTTTGGGACTGGTTCATAGTATGTaGATTTGTGACAGAAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: SQNTSCRLLTSHDSTLLGLVHSM*ICDRKR Trigger: TCTTTTTCTGTCACAAATCCACATACTATGAACCAG...TCCCAAAAGGGTTGAGTCATGACTTGTCAATAACCTACATGAAGTATTTTGACT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| 3UTR CAA 72 bp | TCATGTAGGTTATTGACAAGTCATGACTCAACCCTTTaGGGAACTCGTTTCATATACAAAGTCACTTTCATA | + |
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Preference number: 4 (lower is better) Translates to: SCRLLTSHDSTL*GTRFIYKVTFI Trigger: TATGAAAGTGACTTTGTATATGAAACGAGTTCCCAAAAGGGTTGAGTCATGACTTGTCAATAACCTACATGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| CDS-3UTR CAA 90 bp | TCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAGAACTATTCTCTGCTCTTAGATaGGCCATGGAAGCAAGCTGG | + |
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Preference number: 5 (lower is better) Translates to: SSPVSGIQWGSLTGGRELFSALR*AMEASW Trigger: CCAGCTTGCTTCCATGGCCAATCTAAGAGCAGAGAA...TAGTTCTCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CAA 90 bp | TCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAGAACTAAACAACTGTTGGTATTaGGGAGGCCTCAACTGTTCC | + |
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Preference number: 5 (lower is better) Translates to: SSPVSGIQWGSLTGGRELNNCWY*GGLNCS Trigger: GGAACAGTTGAGGCCTCCCAAATACCAACAGTTGTT...TAGTTCTCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CAA 90 bp | TTGGTATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGATCTGCCTCAGTTCTCTaGTCTTCCCTGGTTGTACTA | + |
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Preference number: 5 (lower is better) Translates to: LVSSPVSGIQWGSLTGGRSASVL*SSLVVL Trigger: TAGTACAACCAGGGAAGACAAGAGAACTGAGGCAGA...TCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATACCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| CDS-3UTR CAA 90 bp | TCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAGAACTAAGTTCCAAGTATCTTTaGCTGAACCAAAGGAGGCAA | + |
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Preference number: 5 (lower is better) Translates to: SSPVSGIQWGSLTGGRELSSKYL*LNQRRQ Trigger: TTGCCTCCTTTGGTTCAGCAAAAGATACTTGGAACT...TAGTTCTCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CAA 90 bp | TTGGTATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAGTACATAAACAACTGTaGGTATTTGGGAGGCCTCAA | + |
|
Preference number: 5 (lower is better) Translates to: LVSSPVSGIQWGSLTGGRVHKQL*VFGRPQ Trigger: TTGAGGCCTCCCAAATACCAACAGTTGTTTATGTAC...TCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATACCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CAA 90 bp | TCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAGAACTAGCTGGAAATCTGAGTTaGAAAAGTAACTTGAACTGG | + |
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Preference number: 5 (lower is better) Translates to: SSPVSGIQWGSLTGGRELAGNLS*KSNLNW Trigger: CCAGTTCAAGTTACTTTTCAAACTCAGATTTCCAGC...TAGTTCTCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CAA 90 bp | TTGGTATCATCTCCAGTTTCAGGCATCCAGTGGGGATCCCTGACAGGTGGGAGAAAGCAAGCTGGGAATTaGAAAGTGATTTTGTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: LVSSPVSGIQWGSLTGGRKQAGN*KVILSS Trigger: TGAAGACAAAATCACTTTCAAATTCCCAGCTTGCTT...TCTCCCACCTGTCAGGGATCCCCACTGGATGCCTGAAACTGGAGATGATACCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS TCA 90 bp | ATGTACATAAACAACTGTTGGTATTTGGGAGGCCTCAACTGTTCCTaGGGTACTTGTGGTTGCAGTTCCAAGTATCTTTTGCTGAACCAA | + |
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Preference number: 5 (lower is better) Translates to: MYINNCWYLGGLNCS*GTCGCSSKYLLLNQ Trigger: TTGGTTCAGCAAAAGATACTTGGAACTGCAACCACAAGTACCTCAGGAACAGTTGAGGCCTCCCAAATACCAACAGTTGTTTATGTACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS-3UTR CAA 90 bp | GTTGTTAACGTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCGTTCACTGGAGCAGCTaGAGGATGCTGACCACCTTT | + |
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Preference number: 5 (lower is better) Translates to: VVNVMTLQWFYTRFGIISVHWSS*RMLTTF Trigger: AAAGGTGGTCAGCATCCTCAAGCTGCTCCAGTGAAC...GGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGACGTTAACAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CAA 90 bp | AGTCAAAATACTTCATGTAGGTTATTGACAAGTCATGACTCAACCCTTTTGGGACTGTTCCTGAGGTACTaGTGGTTGCAGTTCCAAGTA | + |
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Preference number: 5 (lower is better) Translates to: SQNTSCRLLTSHDSTLLGLFLRY*WLQFQV Trigger: TACTTGGAACTGCAACCACAAGTACCTCAGGAACAG...TCCCAAAAGGGTTGAGTCATGACTTGTCAATAACCTACATGAAGTATTTTGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CAA 90 bp | AGTCAAAATACTTCATGTAGGTTATTGACAAGTCATGACTCAACCCTTTTGGGATCTGCCTCAGTTCTCTaGTCTTCCCTGGTTGTACTA | + |
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Preference number: 5 (lower is better) Translates to: SQNTSCRLLTSHDSTLLGSASVL*SSLVVL Trigger: TAGTACAACCAGGGAAGACAAGAGAACTGAGGCAGA...TCCCAAAAGGGTTGAGTCATGACTTGTCAATAACCTACATGAAGTATTTTGACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| CDS CCA 90 bp | TTATGTTGTGATATGTCTGATGTTGGTAAAATACTACTGAGAGGTTaGGAACTAGCAACATCAGTTCCATTCATGATGCTCATGACCGTG | + |
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Preference number: 5 (lower is better) Translates to: LCCDMSDVGKILLRG*ELATSVPFMMLMTV Trigger: CACGGTCATGAGCATCATGAATGGAACTGATGTTGCTAGTTCCCAACCTCTCAGTAGTATTTTACCAACATCAGACATATCACAACATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098750.5 ENSMUST00000098751.10 ENSMUST00000106736.3 |
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| CDS-3UTR CAA 90 bp | CTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGCATCCAGATTGAACAGATGCACTaGTGGAAGAGCTGGAAATCT | + |
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Preference number: 5 (lower is better) Translates to: LYSGFIQDLVSSPVSGIQIEQMH*WKSWKS Trigger: AGATTTCCAGCTCTTCCACAAGTGCATCTGTTCAAT...CTGGATGCCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CAA 90 bp | CTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGCATCCAGAATACTACTGAGAGGTaGGGAACTAGCAACATCAGT | + |
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Preference number: 5 (lower is better) Translates to: LYSGFIQDLVSSPVSGIQNTTER*GTSNIS Trigger: ACTGATGTTGCTAGTTCCCAACCTCTCAGTAGTATT...CTGGATGCCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| CDS-3UTR CAA 90 bp | GTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAGTTTCAGGCTGAAAAACAGGCAATaGAACAGATGCACTTGTGGA | + |
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Preference number: 5 (lower is better) Translates to: VMTLQWFYTRFGIISSFRLKNRQ*NRCTCG Trigger: TCCACAAGTGCATCTGTTCAATTGCCTGTTTTTCAG...CCTGAAACTGGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CAA 90 bp | AGTCAAAATACTTCATGTAGGTTATTGACAAGTCATGACTCAACCCTTTTGGGACTGAGGTACTTGTGGTaGCAGTTCCAAGTATCTTTT | + |
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Preference number: 5 (lower is better) Translates to: SQNTSCRLLTSHDSTLLGLRYLW*QFQVSF Trigger: AAAAGATACTTGGAACTGCAACCACAAGTACCTCAG...TCCCAAAAGGGTTGAGTCATGACTTGTCAATAACCTACATGAAGTATTTTGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS-3UTR CAA 90 bp | GTTGTTAACGTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAATACTACTGAGAGGTaGGGAACTAGCAACATCAGT | + |
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Preference number: 5 (lower is better) Translates to: VVNVMTLQWFYTRFGIISNTTER*GTSNIS Trigger: ACTGATGTTGCTAGTTCCCAACCTCTCAGTAGTATT...GGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGACGTTAACAAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000106736.3 |
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| CDS TCA 90 bp | GGAAAAACTGGGTTTATAAATACAGTCTTACTCTGTTTAAGGCAGTaGGTGGACTGGTTCATAGTATGTGGATTTGTGACAGAAAAAGAT | + |
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Preference number: 5 (lower is better) Translates to: GKTGFINTVLLCLRQ*VDWFIVCGFVTEKD Trigger: ATCTTTTTCTGTCACAAATCCACATACTATGAACCAGTCCACTCACTGCCTTAAACAGAGTAAGACTGTATTTATAAACCCAGTTTTTCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS CCA 90 bp | TTGAACTGGTTTTTCAGTATTCGCTTTCAAACCATGAGACATGACTaGAGACTGAACTACTGGGATAAGATTTCCAGAAGATTTAGAAAT | + |
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Preference number: 5 (lower is better) Translates to: LNWFFSIRFQTMRHD*RLNYWDKISRRFRN Trigger: ATTTCTAAATCTTCTGGAAATCTTATCCCAGTAGTTCAGTCTCCAGTCATGTCTCATGGTTTGAAAGCGAATACTGAAAAACCAGTTCAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 ENSMUST00000130105.2 ENSMUST00000150513.2 ENSMUST00000154973.2 |
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| CDS-3UTR CAA 90 bp | GTTGTTAACGTCATGACTTTACAGTGGTTTTATACAAGATTTGGTATCATCTCCAACATTTGGTGGAATTaGCAAGGTATTGAATGTCAC | + |
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Preference number: 5 (lower is better) Translates to: VVNVMTLQWFYTRFGIISNIWWN*QGIECH Trigger: GTGACATTCAATACCTTGCAAATTCCACCAAATGTT...GGAGATGATACCAAATCTTGTATAAAACCACTGTAAAGTCATGACGTTAACAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000098750.5 |
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| CDS CAA 90 bp | CTGTTGGTATTTGGGAGGCCTCAACTGTTCCTGAGGTACTTGTGGTaGCAGTTCCAAGTATCTTTTGCTGAACCAAAGGAGGCAAGGATG | + |
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Preference number: 6 (lower is better) Translates to: LLVFGRPQLFLRYLW*QFQVSFAEPKEARM Trigger: CATCCTTGCCTCCTTTGGTTCAGCAAAAGATACTTGGAACTGCAACCACAAGTACCTCAGGAACAGTTGAGGCCTCCCAAATACCAACAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS CAA 72 bp | TTTGGGAGGCCTCAACTGTTCCTGAGGTACTTGTGGTaGCAGTTCCAAGTATCTTTTGCTGAACCAAAGGAG | + |
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Preference number: 6 (lower is better) Translates to: FGRPQLFLRYLW*QFQVSFAEPKE Trigger: CTCCTTTGGTTCAGCAAAAGATACTTGGAACTGCAACCACAAGTACCTCAGGAACAGTTGAGGCCTCCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS CAA 90 bp | AAACAACTGTTGGTATTTGGGAGGCCTCAACTGTTCCTGAGGTACTaGTGGTTGCAGTTCCAAGTATCTTTTGCTGAACCAAAGGAGGCA | + |
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Preference number: 6 (lower is better) Translates to: KQLLVFGRPQLFLRY*WLQFQVSFAEPKEA Trigger: TGCCTCCTTTGGTTCAGCAAAAGATACTTGGAACTGCAACCACAAGTACCTCAGGAACAGTTGAGGCCTCCCAAATACCAACAGTTGTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS TCA 72 bp | TCCAAGTATCTTTTGCTGAACCAAAGGAGGCAAGGATaGTGCAAGTACAGATTTCACTTCAGCATGGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: SKYLLLNQRRQG*CKYRFHFSMGW Trigger: CCAGCCCATGCTGAAGTGAAATCTGTACTTGCATCATCCTTGCCTCCTTTGGTTCAGCAAAAGATACTTGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS GCA 72 bp | TGTGCCTTTTTCCTGCTTCTCATGAGAACAGTGTTCTaGCTCAGTTCTCTTGTCTTCCCTGGTTGTACTATG | + |
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Preference number: 6 (lower is better) Translates to: CAFFLLLMRTVF*LSSLVFPGCTM Trigger: CATAGTACAACCAGGGAAGACAAGAGAACTGAGGCAGAACACTGTTCTCATGAGAAGCAGGAAAAAGGCACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000098750.5 ENSMUST00000098751.10 ENSMUST00000106736.3 |
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| CDS TCA 72 bp | AACAACTGTTGGTATTTGGGAGGCCTCAACTGTTCCTaGGGTACTTGTGGTTGCAGTTCCAAGTATCTTTTG | + |
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Preference number: 6 (lower is better) Translates to: NNCWYLGGLNCS*GTCGCSSKYLL Trigger: CAAAAGATACTTGGAACTGCAACCACAAGTACCTCAGGAACAGTTGAGGCCTCCCAAATACCAACAGTTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS CCA 72 bp | CTGTTTAAGGCAGTGAGTGGACTGGTTCATAGTATGTaGATTTGTGACAGAAAAAGATGGTCTCTCCACTTT | + |
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Preference number: 6 (lower is better) Translates to: LFKAVSGLVHSM*ICDRKRWSLHF Trigger: AAAGTGGAGAGACCATCTTTTTCTGTCACAAATCCACATACTATGAACCAGTCCACTCACTGCCTTAAACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS CCA 72 bp | GATATGTCTGATGTTGGTAAAATACTACTGAGAGGTTaGGAACTAGCAACATCAGTTCCATTCATGATGCTC | + |
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Preference number: 6 (lower is better) Translates to: DMSDVGKILLRG*ELATSVPFMML Trigger: GAGCATCATGAATGGAACTGATGTTGCTAGTTCCCAACCTCTCAGTAGTATTTTACCAACATCAGACATATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000098750.5 ENSMUST00000098751.10 ENSMUST00000106736.3 |
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| CDS CAA 72 bp | ATTTCACTGAATTTACAGGATGTACATAAACAACTGTaGGTATTTGGGAGGCCTCAACTGTTCCTGAGGTAC | + |
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Preference number: 6 (lower is better) Translates to: ISLNLQDVHKQL*VFGRPQLFLRY Trigger: GTACCTCAGGAACAGTTGAGGCCTCCCAAATACCAACAGTTGTTTATGTACATCCTGTAAATTCAGTGAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS CAA 72 bp | ATAGGTTCACTTACGGAGTGTGTCCTGCCAGAACTGTaGGTATTCAACAGAGGTGTATCTATTGTATTATCT | + |
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Preference number: 6 (lower is better) Translates to: IGSLTECVLPEL*VFNRGVSIVLS Trigger: AGATAATACAATAGATACACCTCTGTTGAATACCAACAGTTCTGGCAGGACACACTCCGTAAGTGAACCTAT 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS CAA 90 bp | AGGCAATTGAACAGATGCACTTGTGGAAGAGCTGGAAATCTGAGTTaGAAAAGTAACTTGAACTGGTTTTTCAGTATTCGCTTTCAAACC | + |
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Preference number: 6 (lower is better) Translates to: RQLNRCTCGRAGNLS*KSNLNWFFSIRFQT Trigger: GGTTTGAAAGCGAATACTGAAAAACCAGTTCAAGTTACTTTTCAAACTCAGATTTCCAGCTCTTCCACAAGTGCATCTGTTCAATTGCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 5 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 ENSMUST00000130105.2 ENSMUST00000150513.2 ENSMUST00000154973.2 |
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| CDS TCA 72 bp | GGGTTTATAAATACAGTCTTACTCTGTTTAAGGCAGTaGGTGGACTGGTTCATAGTATGTGGATTTGTGACA | + |
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Preference number: 6 (lower is better) Translates to: GFINTVLLCLRQ*VDWFIVCGFVT Trigger: TGTCACAAATCCACATACTATGAACCAGTCCACTCACTGCCTTAAACAGAGTAAGACTGTATTTATAAACCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS CCA 72 bp | TTTTTCAGTATTCGCTTTCAAACCATGAGACATGACTaGAGACTGAACTACTGGGATAAGATTTCCAGAAGA | + |
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Preference number: 6 (lower is better) Translates to: FFSIRFQTMRHD*RLNYWDKISRR Trigger: TCTTCTGGAAATCTTATCCCAGTAGTTCAGTCTCCAGTCATGTCTCATGGTTTGAAAGCGAATACTGAAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 ENSMUST00000130105.2 ENSMUST00000150513.2 ENSMUST00000154973.2 |
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| CDS CAA 72 bp | CTGCTCTTAGATTGGCCATGGAAGCAAGCTGGGAATTaGAAAGTGATTTTGTCTTCAACTGAAAAGATTTAC | + |
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Preference number: 6 (lower is better) Translates to: LLLDWPWKQAGN*KVILSSTEKIY Trigger: GTAAATCTTTTCAGTTGAAGACAAAATCACTTTCAAATTCCCAGCTTGCTTCCATGGCCAATCTAAGAGCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS CAA 90 bp | TTATCTTTAATAGGTTCACTTACGGAGTGTGTCCTGCCAGAACTGTaGGTATTCAACAGAGGTGTATCTATTGTATTATCTCCCAGATTT | + |
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Preference number: 6 (lower is better) Translates to: LSLIGSLTECVLPEL*VFNRGVSIVLSPRF Trigger: AAATCTGGGAGATAATACAATAGATACACCTCTGTTGAATACCAACAGTTCTGGCAGGACACACTCCGTAAGTGAACCTATTAAAGATAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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| CDS CAA 90 bp | AGTGTGTCCTGCCAGAACTGTTGGTATTCAACAGAGGTGTATCTATaGTATTATCTCCCAGATTTTTCCTACCTACAAAAGTGTTTAAAA | + |
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Preference number: 6 (lower is better) Translates to: SVSCQNCWYSTEVYL*YYLPDFSYLQKCLK Trigger: TTTTAAACACTTTTGTAGGTAGGAAAAATCTGGGAGATAATACAATAGATACACCTCTGTTGAATACCAACAGTTCTGGCAGGACACACT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000098750.5 ENSMUST00000127003.8 |
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