RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LRFN5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035653

Ensembl transcript IDs: ENSMUST00000055815.14, ENSMUST00000119481.2

Found 238 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGATTaGCAGGCTTGCTGCCTTTATAGGCTGAGAAATCGCTTGGCCCTG +
Preference number: 1 (lower is better)
Translates to: SPLSTIGSHSLIGQD*QACCLYRLRNRLAL
Trigger: CAGGGCCAAGCGATTTCTCAGCCTATAAAGGCAGCAAGCCTGCCAATCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR CCA 90 bp GGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTaGTTCCCATTCACTAATTGGTCAGGATTGGCAGGCTTGCTGCCT +
Preference number: 1 (lower is better)
Translates to: GQRTICGSPFSSFHY*FPFTNWSGLAGLLP
Trigger: AGGCAGCAAGCCTGCCAATCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR CCA 90 bp TGTGATAGGGTTTTACCTAAGAAACTGTTACGTATTTTGTGTAGATaGTGGTGTGAGACTAGGATGACGGTCAGAGGACAATCTGTGGAA +
Preference number: 1 (lower is better)
Translates to: CDRVLPKKLLRILCR*WCETRMTVRGQSVE
Trigger: TTCCACAGATTGTCCTCTGACCGTCATCCTAGTCTCACACCACCATCTACACAAAATACGTAACAGTTTCTTAGGTAAAACCCTATCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR CAA 90 bp ATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTaGGCTCCCATGAGCAATTCGTTCTGGGACAAGCAGTTCAACAAT +
Preference number: 2 (lower is better)
Translates to: MLGGSQFHHIRDLVA*APMSNSFWDKQFNN
Trigger: ATTGTTGAACTGCTTGTCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
3UTR-3UTR CCA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGAGAGAAGGCACTCTTGTaGTCTCTTGCTCTCCCAAGT +
Preference number: 2 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGEKALL*SLALPS
Trigger: ACTTGGGAGAGCAAGAGACCACAAGAGTGCCTTCTC...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR-3UTR TCA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTAATCGCTTGGCCCTGTaGGTTCTGCTTTTGATTTGC +
Preference number: 2 (lower is better)
Translates to: SEDNLWKSILLFPLLVPINRLAL*VLLLIC
Trigger: GCAAATCAAAAGCAGAACTCACAGGGCCAAGCGATT...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR-3UTR GCA 90 bp GACGGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCGTTCTGCTTTTGATTTaGTGTATATCAGAGGGCTTG +
Preference number: 2 (lower is better)
Translates to: DGQRTICGSPFSSFHYWFVLLLI*CISEGL
Trigger: CAAGCCCTCTGATATACAGCAAATCAAAAGCAGAAC...GAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACCGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR-3UTR TCA 90 bp ATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTGTGAGTTCTGCTTTTaGTTTGCTGTATATCAGAGG +
Preference number: 2 (lower is better)
Translates to: ICGSPFSSFHYWFPFTNWCEFCF*FAVYQR
Trigger: CCTCTGATATACAGCAAATCAAAAGCAGAACTCACA...CCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR CAA 90 bp AGATTCTACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTaGATACAGAACTTGATGCCAATGAAGGCTTGTTCTTTTTCCTTT +
Preference number: 2 (lower is better)
Translates to: RFYSLLNHGWQCRMD*IQNLMPMKACSFSF
Trigger: AAAGGAAAAAGAACAAGCCTTCATTGGCATCAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTAGAATCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
3UTR GCA 72 bp GGTTCCCATTCACTAATTGGTCAGGATTGGCAGGCTTaGTGCCTTTATAGGCTGAGAAATCGCTTGGCCCTG +
Preference number: 3 (lower is better)
Translates to: GSHSLIGQDWQA*CLYRLRNRLAL
Trigger: CAGGGCCAAGCGATTTCTCAGCCTATAAAGGCAGCAAGCCTGCCAATCCTGACCAATTAGTGAATGGGAACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR-3UTR CAA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGACACTCTTGTGGTCTCTaGCTCTCCCAAGTTTGCCAT +
Preference number: 3 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGHSCGL*LSQVCH
Trigger: ATGGCAAACTTGGGAGAGCAAGAGACCACAAGAGTG...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR CCA 72 bp TCCACTATTGGTTCCCATTCACTAATTGGTCAGGATTaGCAGGCTTGCTGCCTTTATAGGCTGAGAAATCGC +
Preference number: 3 (lower is better)
Translates to: STIGSHSLIGQD*QACCLYRLRNR
Trigger: GCGATTTCTCAGCCTATAAAGGCAGCAAGCCTGCCAATCCTGACCAATTAGTGAATGGGAACCAATAGTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR CCA 72 bp ACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTaGTTCCCATTCACTAATTGGTCAGGATTGGCAGGC +
Preference number: 3 (lower is better)
Translates to: TICGSPFSSFHY*FPFTNWSGLAG
Trigger: GCCTGCCAATCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR-3UTR CAA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGAGAGACCTTGTAGCTTaGGCTCCCATGAGCAATTCG +
Preference number: 3 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLRDLVA*APMSNS
Trigger: CGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCT...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
3UTR CCA 72 bp GTTTTACCTAAGAAACTGTTACGTATTTTGTGTAGATaGTGGTGTGAGACTAGGATGACGGTCAGAGGACAA +
Preference number: 3 (lower is better)
Translates to: VLPKKLLRILCR*WCETRMTVRGQ
Trigger: TTGTCCTCTGACCGTCATCCTAGTCTCACACCACCATCTACACAAAATACGTAACAGTTTCTTAGGTAAAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR-3UTR CAA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATCTTGCTCTCCCAAGTTaGCCATTTTATTCATGTAAC +
Preference number: 3 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYLALPS*PFYSCN
Trigger: GTTACATGAATAAAATGGCAAACTTGGGAGAGCAAG...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
3UTR CCA 72 bp GATTATTCAAGATTCTACAGTCTGTTAAATCATGGATaGCAATGTAGGATGGATTTGATACAGAACTTGATG +
Preference number: 3 (lower is better)
Translates to: DYSRFYSLLNHG*QCRMDLIQNLM
Trigger: CATCAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTAGAATCTTGAATAATC
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGTGGACTGGGGCAGCGTaGCACTGCAGCCTTGCATCT +
Preference number: 4 (lower is better)
Translates to: GREPVSPHQRPCSFGSHEWTGAA*HCSLAS
Trigger: AGATGCAAGGCTGCAGTGTCACGCTGCCCCAGTCCA...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CCA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGGGCCCATGGCTTGTTTaGACATGGACTGGGGCAGCG +
Preference number: 4 (lower is better)
Translates to: GREPVSPHQRPCSFGSHEGPWLV*TWTGAA
Trigger: CGCTGCCCCAGTCCATGTCCAAACAAGCCATGGGCC...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCTCAGTGTTGCCCTTTaGCCCTCCAAGACTCTCATC +
Preference number: 4 (lower is better)
Translates to: GREPVSPHQRPCSFGSHELSVAL*PSKTLI
Trigger: GATGAGAGTCTTGGAGGGTCAAAGGGCAACACTGAG...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCCGCTTTGGACAGATCTaGGCTCGCACAGCTATGCCA +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGRFGQI*ARTAMP
Trigger: TGGCATAGCTGTGCGAGCTCAGATCTGTCCAAAGCG...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp GACGGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCTGGACTGGGGCAGCGTaGCACTGCAGCCTTGCATCT +
Preference number: 4 (lower is better)
Translates to: DGQRTICGSPFSSFHYWFWTGAA*HCSLAS
Trigger: AGATGCAAGGCTGCAGTGTCACGCTGCCCCAGTCCA...GAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACCGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCCTGCGGCTCAGCACTTaGCTTCGTGCCAGTCTTTCT +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGLRLST*LRASLS
Trigger: AGAAAGACTGGCACGAAGCCAAGTGCTGAGCCGCAG...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
3UTR CAA 72 bp GGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTaGGCTCCCATGAGCAATTCGTTCTGGGACAAGCAG +
Preference number: 4 (lower is better)
Translates to: GSQFHHIRDLVA*APMSNSFWDKQ
Trigger: CTGCTTGTCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCATCCACGGTTTGTGTTaGTTCCCCTGCCGGATTGGA +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGIHGLC*FPCRIG
Trigger: TCCAATCCGGCAGGGGAAGCAACACAAACCGTGGAT...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGATTTGGCTTGGTATGTaGTCTTTGAGATGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: GREPVSPHQRPCSFGSHEIWLGM*SLRCGP
Trigger: GGGCCCACATCTCAAAGAGCACATACCAAGCCAAAT...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGAAGCACCTGTGCTCGCTaGAACAGAGGGTCAGGAGGC +
Preference number: 4 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGSTCAR*NRGSGG
Trigger: GCCTCCTGACCCTCTGTTTCAGCGAGCACAGGTGCT...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAAAGTCGATGGGCTTATaGTTCCTGAGGTGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGKSMGL*FLRWPA
Trigger: TGCTGGCCACCTCAGGAATCATAAGCCCATCGACTT...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGACTCATCTCATGTGTATaGCGAGTGATGAGCGGAGGC +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGLISCV*RVMSGG
Trigger: GCCTCCGCTCATCACTCGTCATACACATGAGATGAG...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCCATTGTACTGGATTTaGAACATACGGATTCCGGGA +
Preference number: 4 (lower is better)
Translates to: GREPVSPHQRPCSFGSHEPLYWI*NIRIPG
Trigger: TCCCGGAATCCGTATGTTTCAAATCCAGTACAATGG...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAGGGACTCAACATTTGTaGCAGCTTCACTCTGCGGCT +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGGTQHL*QLHSAA
Trigger: AGCCGCAGAGTGAAGCTGTCACAAATGTTGAGTCCC...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTTGGTATGTGCTCTTTaGGATGTGGGCCCCTCTGTA +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGLVCAL*DVGPSV
Trigger: TACAGAGGGGCCCACATCTCAAAGAGCACATACCAA...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGTCCAAACTAAGGGTGTaGAAGCTCACCATCTTCTCT +
Preference number: 4 (lower is better)
Translates to: GREPVSPHQRPCSFGSHESKLRV*KLTIFS
Trigger: AGAGAAGATGGTGAGCTTGCACACCCTTAGTTTGGA...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAGGTCTCCTCGAGCTTTaGACCTCAGTGTTGCCCTTT +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGGLLEL*TSVLPF
Trigger: AAAGGGCAACACTGAGGTGCAAAGCTCGAGGAGACC...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCGGGCAGCTAGCTAACTaGAAGGCAGTTGAGTTGTTC +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGGQLAN*KAVELF
Trigger: GAACAACTCAACTGCCTTGCAGTTAGCTAGCTGCCC...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CCA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTGGCCCATGGCTTGTTTaGACATGGACTGGGGCAGCG +
Preference number: 4 (lower is better)
Translates to: SEDNLWKSILLFPLLVPIGPWLV*TWTGAA
Trigger: CGCTGCCCCAGTCCATGTCCAAACAAGCCATGGGCC...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTTGGGCTTATGATTCCTaGGGTGGCCAGCACCTGTGC +
Preference number: 4 (lower is better)
Translates to: SEDNLWKSILLFPLLVPIWAYDS*GGQHLC
Trigger: GCACAGGTGCTGGCCACCTCAGGAATCATAAGCCCA...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAGCTAGCATTCGAGCCTaGCTTAGTGGATGTGGAGAT +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGASIRA*LSGCGD
Trigger: ATCTCCACATCCACTAAGTCAGGCTCGAATGCTAGC...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp ATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGCCTTTAAACCTCCACTaGGGGAGGCCCTGTGCCTGG +
Preference number: 4 (lower is better)
Translates to: ICGSPFSSFHYWFPFTNWPLNLH*GRPCAW
Trigger: CCAGGCACAGGGCCTCCCTCAGTGGAGGTTTAAAGG...CCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAACAGACACAACGCTTTaGACAGATCTGAGCTCGCAC +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGTDTTL*TDLSSH
Trigger: GTGCGAGCTCAGATCTGTCCAAAGCGTTGTGTCTGT...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCTCTTCATGGCCCATaGCTTGTTTGGACATGGACT +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGSLHGP*LVWTWT
Trigger: AGTCCATGTCCAAACAAGCCATGGGCCATGAAGAGA...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAGCAACTTTACAGCACTaGGCATTCTCTTCATGGCCC +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGATLQH*AFSSWP
Trigger: GGGCCATGAAGAGAATGCCCAGTGCTGTAAAGTTGC...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGGGGAGTTTAATTATGTaGAGATCCACGGTTTGTGTT +
Preference number: 4 (lower is better)
Translates to: GREPVSPHQRPCSFGSHEGSLIM*RSTVCV
Trigger: AACACAAACCGTGGATCTTCACATAATTAAACTCCC...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGACTCGAACATGTTTCTaGAGACTGAATTGCATTGTC +
Preference number: 4 (lower is better)
Translates to: GREPVSPHQRPCSFGSHETRTCF*RLNCIV
Trigger: GACAATGCAATTCAGTCTTCAGAAACATGTTCGAGT...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGTCCACCAAAACTCAATaGAAAAGTCGATGGGCTTAT +
Preference number: 4 (lower is better)
Translates to: GREPVSPHQRPCSFGSHESTKTQ*KSRWAY
Trigger: ATAAGCCCATCGACTTTTGCATTGAGTTTTGGTGGA...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGATTGTGTTGCTTCCCCTaGCGGATTGGAAGCAATACA +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGLCCFP*RIGSNT
Trigger: TGTATTGCTTCCAATCCGGCAGGGGAAGCAACACAA...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGACAGCACTTGGCTTCGTaGCAGTCTTTCTTTTCTGCT +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGQHLAS*QSFFSA
Trigger: AGCAGAAAAGAAAGACTGGCACGAAGCCAAGTGCTG...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGTGACAGCTTCACTCTaGGGCTCAGCACTTGGCTTC +
Preference number: 4 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQVTASL*GSALGF
Trigger: GAAGCCAAGTGCTGAGCCGCAGAGTGAAGCTGTCAC...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTGCCATCGTCATAGATaGCCAAGACACACAAGTCAT +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGCHRHR*PRHTSH
Trigger: ATGACTTGTGTGTCTTGGCCATCTATGACGATGGCA...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CCA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGACTGCGGCTCAGCACTTaGCTTCGTGCCAGTCTTTCT +
Preference number: 4 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGLRLST*LRASLS
Trigger: AGAAAGACTGGCACGAAGCCAAGTGCTGAGCCGCAG...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATCGCTTTGGACAGATCTaGGCTCGCACAGCTATGCCA +
Preference number: 4 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYRFGQI*ARTAMP
Trigger: TGGCATAGCTGTGCGAGCTCAGATCTGTCCAAAGCG...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTTTGGAGACAAAATCTaGCAGACACAACGCTTTGGA +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGFGDKI*QTQRFG
Trigger: TCCAAAGCGTTGTGTCTGTCAGATTTTGTCTCCAAA...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp TTTGCTGTATATCAGAGGGCTTGTATATTAGCCTTAGGGAAGGAGAAGGCACTCAAGTCGATGGGCTTATaGTTCCTGAGGTGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: FAVYQRACILALGKEKALKSMGL*FLRWPA
Trigger: TGCTGGCCACCTCAGGAATCATAAGCCCATCGACTT...GAGTGCCTTCTCCTTCCCTAAGGCTAATATACAAGCCCTCTGATATACAGCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCTCATCTCATGTGTATaGCGAGTGATGAGCGGAGGC +
Preference number: 4 (lower is better)
Translates to: SEDNLWKSILLFPLLVPILISCV*RVMSGG
Trigger: GCCTCCGCTCATCACTCGTCATACACATGAGATGAG...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGACTCAGTGTTGCCCTTTaGCCCTCCAAGACTCTCATC +
Preference number: 4 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGLSVAL*PSKTLI
Trigger: GATGAGAGTCTTGGAGGGTCAAAGGGCAACACTGAG...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGATCAGGCTCATGGATATaGTTGGTGCTGTTTAGTAGG +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGSGSWI*LVLFSR
Trigger: CCTACTAAACAGCACCAATCATATCCATGAGCCTGA...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGAGGGACTCAACATTTGTaGCAGCTTCACTCTGCGGCT +
Preference number: 4 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGGTQHL*QLHSAA
Trigger: AGCCGCAGAGTGAAGCTGTCACAAATGTTGAGTCCC...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGCCTCAGCAGGCACAGTaGGAAACTTACTTGGCTTGG +
Preference number: 4 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQPQQAQ*ETYLAW
Trigger: CCAAGCCAAGTAAGTTTCTCACTGTGCCTGCTGAGG...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGGTCTCCTCGAGCTTTaGACCTCAGTGTTGCCCTTT +
Preference number: 4 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQGLLEL*TSVLPF
Trigger: AAAGGGCAACACTGAGGTGCAAAGCTCGAGGAGACC...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGATCCACGGTTTGTGTTaGTTCCCCTGCCGGATTGGA +
Preference number: 4 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQIHGLC*FPCRIG
Trigger: TCCAATCCGGCAGGGGAAGCAACACAAACCGTGGAT...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAGAATTGCATTGTCACTaGCAACTTTACAGCACTGGG +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGELHCH*QLYSTG
Trigger: CCCAGTGCTGTAAAGTTGCCAGTGACAATGCAATTC...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGAGCTAGCATTCGAGCCTaGCTTAGTGGATGTGGAGAT +
Preference number: 4 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGASIRA*LSGCGD
Trigger: ATCTCCACATCCACTAAGTCAGGCTCGAATGCTAGC...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGATTGGTATGTGCTCTTTaGGATGTGGGCCCCTCTGTA +
Preference number: 4 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGLVCAL*DVGPSV
Trigger: TACAGAGGGGCCCACATCTCAAAGAGCACATACCAA...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCGTTTCCTGGACATTCTaGTCAACATTAGTCAGCAAA +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGVSWTF*STLVSK
Trigger: TTTGCTGACTAATGTTGATCAGAATGTCCAGGAAAC...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCCTTGGCACAAAGGGTTaGAAGATTTGGAGACAAAAT +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGLGTKG*KIWRQN
Trigger: ATTTTGTCTCCAAATCTTGCAACCCTTTGTGCCAAG...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGAAGCCGAGTCATCTTGTaGAAGTGGGAGAAAGTACCC +
Preference number: 4 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGSRVIL*KWEKVP
Trigger: GGGTACTTTCTCCCACTTGCACAAGATGACTCGGCT...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCAACTCACAATTGCAATaGAAGGGGTTTCCACCAAAA +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGNSQLQ*KGFPPK
Trigger: TTTTGGTGGAAACCCCTTGCATTGCAATTGTGAGTT...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTTCGTGACCTTGTGTTaGCCATTATTGTTACAAACC +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGFVTLC*PLLLQT
Trigger: GGTTTGTAACAATAATGGGCAACACAAGGTCACGAA...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTGGGCAGCTAGCTAACTaGAAGGCAGTTGAGTTGTTC +
Preference number: 4 (lower is better)
Translates to: SEDNLWKSILLFPLLVPIGQLAN*KAVELF
Trigger: GAACAACTCAACTGCCTTGCAGTTAGCTAGCTGCCC...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTACTTGGCTTGGTATGTaGTCTTTGAGATGTGGGCCC +
Preference number: 4 (lower is better)
Translates to: SEDNLWKSILLFPLLVPITWLGM*SLRCGP
Trigger: GGGCCCACATCTCAAAGAGCACATACCAAGCCAAGT...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTTCAATATCAAATGGTaGAGATTGGAAAGCCCACTG +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGFNIKW*RLESPL
Trigger: CAGTGGGCTTTCCAATCTCCACCATTTGATATTGAA...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CCA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTTGGGCATTCTCTTCATaGCCCATGGCTTGTTTGGAC +
Preference number: 4 (lower is better)
Translates to: SEDNLWKSILLFPLLVPIWAFSS*PMACLD
Trigger: GTCCAAACAAGCCATGGGCCATGAAGAGAATGCCCA...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGCAACTTTACAGCACTaGGCATTCTCTTCATGGCCC +
Preference number: 4 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQATLQH*AFSSWP
Trigger: GGGCCATGAAGAGAATGCCCAGTGCTGTAAAGTTGC...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGTGGGCTTATGATTCCTaGGGTGGCCAGCACCTGTGC +
Preference number: 4 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLWAYDS*GGQHLC
Trigger: GCACAGGTGCTGGCCACCTCAGGAATCATAAGCCCA...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATTCAGGGGAAATCCAATaGATCGCAGGTTCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYSGEIQ*IAGSGS
Trigger: AGACCCTGAACCTGCGATTCATTGGATTTCCCCTGA...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCAGGAGGCAGCTTTTaGAGTTTATTTGATGTTACA +
Preference number: 4 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGSGGSF*SLFDVT
Trigger: TGTAACATCAAATAAACTGCAAAAGCTGCCTCCTGA...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGTTGTGTTGCTTCCCCTaGCGGATTGGAAGCAATACA +
Preference number: 4 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQLCCFP*RIGSNT
Trigger: TGTATTGCTTCCAATCCGGCAGGGGAAGCAACACAA...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGACAGCACTTGGCTTCGTaGCAGTCTTTCTTTTCTGCT +
Preference number: 4 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGQHLAS*QSFFSA
Trigger: AGCAGAAAAGAAAGACTGGCACGAAGCCAAGTGCTG...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATACAGACACAACGCTTTaGACAGATCTGAGCTCGCAC +
Preference number: 4 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYTDTTL*TDLSSH
Trigger: GTGCGAGCTCAGATCTGTCCAAAGCGTTGTGTCTGT...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAAAGGGTTGCAAGATTTaGAGACAAAATCTGACAGAC +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGKGCKI*RQNLTD
Trigger: GTCTGTCAGATTTTGTCTCCAAATCTTGCAACCCTT...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CCA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGTCTCTTCATGGCCCATaGCTTGTTTGGACATGGACT +
Preference number: 4 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQSLHGP*LVWTWT
Trigger: AGTCCATGTCCAAACAAGCCATGGGCCATGAAGAGA...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp TTTGCTGTATATCAGAGGGCTTGTATATTAGCCTTAGGGAAGGAGAAGGCACTCTCAGGCTCATGGATATaGTTGGTGCTGTTTAGTAGG +
Preference number: 4 (lower is better)
Translates to: FAVYQRACILALGKEKALSGSWI*LVLFSR
Trigger: CCTACTAAACAGCACCAATCATATCCATGAGCCTGA...GAGTGCCTTCTCCTTCCCTAAGGCTAATATACAAGCCCTCTGATATACAGCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGTCCAAACTAAGGGTGTaGAAGCTCACCATCTTCTCT +
Preference number: 4 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQSKLRV*KLTIFS
Trigger: AGAGAAGATGGTGAGCTTGCACACCCTTAGTTTGGA...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGGTGACAGCTTCACTCTaGGGCTCAGCACTTGGCTTC +
Preference number: 4 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLVTASL*GSALGF
Trigger: GAAGCCAAGTGCTGAGCCGCAGAGTGAAGCTGTCAC...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGATTGTTCAATATCAAATaGTGGAGATTGGAAAGCCCA +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGLFNIK*WRLESP
Trigger: TGGGCTTTCCAATCTCCACCATTTGATATTGAACAA...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGATTCCTGTTAGTGTTTTaGGACTCAACATTTGTGACA +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGFLLVF*DSTFVT
Trigger: TGTCACAAATGTTGAGTCCCAAAACACTAACAGGAA...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
3UTR CAA 72 bp GCTTGTATATTAGCCTTAGGGAAGGAGAAGGCACTCTaGTGGTCTCTTGCTCTCCCAAGTTTGCCATTTTAT +
Preference number: 4 (lower is better)
Translates to: ACILALGKEKAL*WSLALPSLPFY
Trigger: ATAAAATGGCAAACTTGGGAGAGCAAGAGACCACAAGAGTGCCTTCTCCTTCCCTAAGGCTAATATACAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTTTTGGAGACAAAATCTaGCAGACACAACGCTTTGGA +
Preference number: 4 (lower is better)
Translates to: SEDNLWKSILLFPLLVPIFGDKI*QTQRFG
Trigger: TCCAAAGCGTTGTGTCTGTCAGATTTTGTCTCCAAA...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATCCATTGTACTGGATTTaGAACATACGGATTCCGGGA +
Preference number: 4 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYPLYWI*NIRIPG
Trigger: TCCCGGAATCCGTATGTTTCAAATCCAGTACAATGG...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGCATGTTTCTGAAGACTaGATTGCATTGTCACTGGCA +
Preference number: 4 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQHVSED*IALSLA
Trigger: TGCCAGTGACAATGCAATTCAGTCTTCAGAAACATG...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp ATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGACAGCAACTCACAATTaGAATGCAAGGGGTTTCCAC +
Preference number: 4 (lower is better)
Translates to: ICGSPFSSFHYWFPFTNWTATHN*NARGFH
Trigger: GTGGAAACCCCTTGCATTGCAATTGTGAGTTGCTGT...CCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAATACATAGTTCCAGATaGCAGATTATTGACCAGAAA +
Preference number: 4 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGIHSSR*QIIDQK
Trigger: TTTCTGGTCAATAATCTGGCATCTGGAACTATGTAT...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CCA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGAATAGAAGCCCTTTCTTaGCACAAAGGGTTGCAAGAT +
Preference number: 4 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGIEALS*HKGLQD
Trigger: ATCTTGCAACCCTTTGTGCCAAGAAAGGGCTTCTAT...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATTGCCATCGTCATAGATaGCCAAGACACACAAGTCAT +
Preference number: 4 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYCHRHR*PRHTSH
Trigger: ATGACTTGTGTGTCTTGGCCATCTATGACGATGGCA...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATTGTTCCGTAGTAAACTaGATGCAACCCACGACTCTT +
Preference number: 4 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYCSVVN*MQPTTL
Trigger: AAGAGTCGTGGGTTGCATCCAGTTTACTACGGAACA...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATGAATTGCATTGTCACTaGCAACTTTACAGCACTGGG +
Preference number: 4 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYELHCH*QLYSTG
Trigger: CCCAGTGCTGTAAAGTTGCCAGTGACAATGCAATTC...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGTCAGGGGAAATCCAATaGATCGCAGGTTCAGGGTCT +
Preference number: 4 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLSGEIQ*IAGSGS
Trigger: AGACCCTGAACCTGCGATTCATTGGATTTCCCCTGA...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGAGGGAGTTTAATTATGTaGAGATCCACGGTTTGTGTT +
Preference number: 4 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGGSLIM*RSTVCV
Trigger: AACACAAACCGTGGATCTTCACATAATTAAACTCCC...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp ATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGCAGATGCCAGATTATTaGCCAGAAATGTTTTGCTCG +
Preference number: 4 (lower is better)
Translates to: ICGSPFSSFHYWFPFTNWQMPDY*PEMFCS
Trigger: CGAGCAAAACATTTCTGGTCAATAATCTGGCATCTG...CCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR TCA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTACTCGAACATGTTTCTaGAGACTGAATTGCATTGTC +
Preference number: 4 (lower is better)
Translates to: SEDNLWKSILLFPLLVPITRTCF*RLNCIV
Trigger: GACAATGCAATTCAGTCTTCAGAAACATGTTCGAGT...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCTTGGCACAAAGGGTTaGAAGATTTGGAGACAAAAT +
Preference number: 4 (lower is better)
Translates to: SEDNLWKSILLFPLLVPILGTKG*KIWRQN
Trigger: ATTTTGTCTCCAAATCTTGCAACCCTTTGTGCCAAG...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGATCCACCAAAACTCAATaGAAAAGTCGATGGGCTTAT +
Preference number: 4 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGSTKTQ*KSRWAY
Trigger: ATAAGCCCATCGACTTTTGCATTGAGTTTTGGTGGA...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTAACTCACAATTGCAATaGAAGGGGTTTCCACCAAAA +
Preference number: 4 (lower is better)
Translates to: SEDNLWKSILLFPLLVPINSQLQ*KGFPPK
Trigger: TTTTGGTGGAAACCCCTTGCATTGCAATTGTGAGTT...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGTGGGCATTCTCTTCATaGCCCATGGCTTGTTTGGAC +
Preference number: 4 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLWAFSS*PMACLD
Trigger: GTCCAAACAAGCCATGGGCCATGAAGAGAATGCCCA...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CCA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGAAACTTACTTGGCTTaGTATGTGCTCTTTGAGATG +
Preference number: 4 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQETYLA*YVLFEM
Trigger: CATCTCAAAGAGCACATACCAAGCCAAGTAAGTTTC...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATTTCGTGACCTTGTGTTaGCCATTATTGTTACAAACC +
Preference number: 4 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYFVTLC*PLLLQT
Trigger: GGTTTGTAACAATAATGGGCAACACAAGGTCACGAA...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATAAGGGTTGCAAGATTTaGAGACAAAATCTGACAGAC +
Preference number: 4 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYKGCKI*RQNLTD
Trigger: GTCTGTCAGATTTTGTCTCCAAATCTTGCAACCCTT...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp ATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTTCAATATCAAATGGTaGAGATTGGAAAGCCCACTG +
Preference number: 4 (lower is better)
Translates to: ICGSPFSSFHYWFPFTNWFNIKW*RLESPL
Trigger: CAGTGGGCTTTCCAATCTCCACCATTTGATATTGAA...CCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp TTTGCTGTATATCAGAGGGCTTGTATATTAGCCTTAGGGAAGGAGAAGGCACTCTTGTTCAATATCAAATaGTGGAGATTGGAAAGCCCA +
Preference number: 4 (lower is better)
Translates to: FAVYQRACILALGKEKALLFNIK*WRLESP
Trigger: TGGGCTTTCCAATCTCCACCATTTGATATTGAACAA...GAGTGCCTTCTCCTTCCCTAAGGCTAATATACAAGCCCTCTGATATACAGCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGTTCCTGTTAGTGTTTTaGGACTCAACATTTGTGACA +
Preference number: 4 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQFLLVF*DSTFVT
Trigger: TGTCACAAATGTTGAGTCCCAAAACACTAACAGGAA...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATAGTGAGAAACTTACTTaGCTTGGTATGTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYSEKLT*LGMCSL
Trigger: CAAAGAGCACATACCAAGCCAAGTAAGTTTCTCACT...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATTCAGGAGGCAGCTTTTaGAGTTTATTTGATGTTACA +
Preference number: 4 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYSGGSF*SLFDVT
Trigger: TGTAACATCAAATAAACTGCAAAAGCTGCCTCCTGA...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR GCA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGACAGCAACTCACAATTaGAATGCAAGGGGTTTCCAC +
Preference number: 4 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLTATHN*NARGFH
Trigger: GTGGAAACCCCTTGCATTGCAATTGTGAGTTGCTGT...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR GCA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTATACATAGTTCCAGATaGCAGATTATTGACCAGAAA +
Preference number: 4 (lower is better)
Translates to: SEDNLWKSILLFPLLVPIIHSSR*QIIDQK
Trigger: TTTCTGGTCAATAATCTGGCATCTGGAACTATGTAT...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CCA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGTGTTCCGTAGTAAACTaGATGCAACCCACGACTCTT +
Preference number: 4 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLCSVVN*MQPTTL
Trigger: AAGAGTCGTGGGTTGCATCCAGTTTACTACGGAACA...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGCAGATGCCAGATTATTaGCCAGAAATGTTTTGCTCG +
Preference number: 4 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLQMPDY*PEMFCS
Trigger: CGAGCAAAACATTTCTGGTCAATAATCTGGCATCTG...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR TCA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGCATGTTTCTGAAGACTaGATTGCATTGTCACTGGCA +
Preference number: 4 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLHVSED*IALSLA
Trigger: TGCCAGTGACAATGCAATTCAGTCTTCAGAAACATG...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CCA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGAGTCAGCAAAGCATTTaGCTTGGTATGTGCTCTTTG +
Preference number: 4 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLSQQSI*LGMCSL
Trigger: CAAAGAGCACATACCAAGCCAAATGCTTTGCTGACT...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
3UTR CAA 72 bp AGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTaGATACAGAACTTGATGCCAATGAAGGCTTGTTCT +
Preference number: 4 (lower is better)
Translates to: SLLNHGWQCRMD*IQNLMPMKACS
Trigger: AGAACAAGCCTTCATTGGCATCAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGTGGCCCATGGCTTGTTaGGACATGGACTGGGGCAGC +
Preference number: 5 (lower is better)
Translates to: GREPVSPHQRPCSFGSHEWPMAC*DMDWGS
Trigger: GCTGCCCCAGTCCATGTCCAAACAAGCCATGGGCCA...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCTTTGCACCTCAGTGTaGCCCTTTGACCCTCCAAGA +
Preference number: 5 (lower is better)
Translates to: GREPVSPHQRPCSFGSHELCTSV*PFDPPR
Trigger: TCTTGGAGGGTCAAAGGGCAACACTGAGGTGCAAAG...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCTGCGGCTCAGCACTaGGCTTCGTGCCAGTCTTTC +
Preference number: 5 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGSAAQH*ASCQSF
Trigger: GAAAGACTGGCACGAAGCCAAGTGCTGAGCCGCAGA...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS TCA 90 bp TGCGGCTCAGCACTTGGCTTCGTGCCAGTCTTTCTTTTCTGCTTTTaGGACACAGGCGCACTTGAAGTCCAGGTAGGAGGCAAAGCAGAG +
Preference number: 5 (lower is better)
Translates to: CGSALGFVPVFLFCF*DTGALEVQVGGKAE
Trigger: CTCTGCTTTGCCTCCTACCTGGACTTCAAGTGCGCCTGTGTCTCAAAAGCAGAAAAGAAAGACTGGCACGAAGCCAAGTGCTGAGCCGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAGGGTCTCCTCGAGCTTaGCACCTCAGTGTTGCCCTT +
Preference number: 5 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGGSPRA*HLSVAL
Trigger: AAGGGCAACACTGAGGTGCAAAGCTCGAGGAGACCC...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS TCA 90 bp GTTTCCACCAAAACTCAATGCAAAAGTCGATGGGCTTATGATTCCTaGGGTGGCCAGCACCTGTGCTCGCTGAAACAGAGGGTCAGGAGG +
Preference number: 5 (lower is better)
Translates to: VSTKTQCKSRWAYDS*GGQHLCSLKQRVRR
Trigger: CCTCCTGACCCTCTGTTTCAGCGAGCACAGGTGCTGGCCACCTCAGGAATCATAAGCCCATCGACTTTTGCATTGAGTTTTGGTGGAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS GCA 90 bp CAGGGGAAATCCAATGAATCGCAGGTTCAGGGTCTCCTCGAGCTTTaGACCTCAGTGTTGCCCTTTGACCCTCCAAGACTCTCATCTCAT +
Preference number: 5 (lower is better)
Translates to: QGKSNESQVQGLLEL*TSVLPFDPPRLSSH
Trigger: ATGAGATGAGAGTCTTGGAGGGTCAAAGGGCAACACTGAGGTGCAAAGCTCGAGGAGACCCTGAACCTGCGATTCATTGGATTTCCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CCA 90 bp ATTGCATTGTCACTGGCAACTTTACAGCACTGGGCATTCTCTTCATaGCCCATGGCTTGTTTGGACATGGACTGGGGCAGCGTGACACTG +
Preference number: 5 (lower is better)
Translates to: IALSLATLQHWAFSS*PMACLDMDWGSVTL
Trigger: CAGTGTCACGCTGCCCCAGTCCATGTCCAAACAAGCCATGGGCCATGAAGAGAATGCCCAGTGCTGTAAAGTTGCCAGTGACAATGCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CCA 90 bp GTGCCTGGCTCTAGATCCCTCAGCAGGCACAGTGAGAAACTTACTTaGCTTGGTATGTGCTCTTTGAGATGTGGGCCCCTCTGTAACAGA +
Preference number: 5 (lower is better)
Translates to: VPGSRSLSRHSEKLT*LGMCSLRCGPLCNR
Trigger: TCTGTTACAGAGGGGCCCACATCTCAAAGAGCACATACCAAGCCAAGTAAGTTTCTCACTGTGCCTGCTGAGGGATCTAGAGCCAGGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp GACGGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCTCTGCGGCTCAGCACTaGGCTTCGTGCCAGTCTTTC +
Preference number: 5 (lower is better)
Translates to: DGQRTICGSPFSSFHYWFSAAQH*ASCQSF
Trigger: GAAAGACTGGCACGAAGCCAAGTGCTGAGCCGCAGA...GAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACCGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS TCA 90 bp TCAGCAGGCACAGTGAGAAACTTACTTGGCTTGGTATGTGCTCTTTaGGATGTGGGCCCCTCTGTAACAGAATCAGGAGGGCAGCTAGCT +
Preference number: 5 (lower is better)
Translates to: SAGTVRNLLGLVCAL*DVGPSVTESGGQLA
Trigger: AGCTAGCTGCCCTCCTGATTCTGTTACAGAGGGGCCCACATCTCAAAGAGCACATACCAAGCCAAGTAAGTTTCTCACTGTGCCTGCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS GCA 90 bp ATGAATCGCAGGTTCAGGGTCTCCTCGAGCTTTGCACCTCAGTGTTaGCCTTTGACCCTCCAAGACTCTCATCTCATGTGTATGACGAGT +
Preference number: 5 (lower is better)
Translates to: MNRRFRVSSSFAPQC*PLTLQDSHLMCMTS
Trigger: ACTCGTCATACACATGAGATGAGAGTCTTGGAGGGTCAAAGGGCAACACTGAGGTGCAAAGCTCGAGGAGACCCTGAACCTGCGATTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS GCA 90 bp AGATCCCTCAGCAGGCACAGTGAGAAACTTACTTGGCTTGGTATGTaGTCTTTGAGATGTGGGCCCCTCTGTAACAGAATCAGGAGGGCA +
Preference number: 5 (lower is better)
Translates to: RSLSRHSEKLTWLGM*SLRCGPLCNRIRRA
Trigger: TGCCCTCCTGATTCTGTTACAGAGGGGCCCACATCTCAAAGAGCACATACCAAGCCAAGTAAGTTTCTCACTGTGCCTGCTGAGGGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS CCA 90 bp TTGGGACTCAACATTTGTGACAGCTTCACTCTGCGGCTCAGCACTTaGCTTCGTGCCAGTCTTTCTTTTCTGCTTTTGAGACACAGGCGC +
Preference number: 5 (lower is better)
Translates to: LGLNICDSFTLRLST*LRASLSFLLLRHRR
Trigger: GCGCCTGTGTCTCAAAAGCAGAAAAGAAAGACTGGCACGAAGCCAAGTGCTGAGCCGCAGAGTGAAGCTGTCACAAATGTTGAGTCCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAGACAGACACAACGCTTaGGACAGATCTGAGCTCGCA +
Preference number: 5 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGDRHNA*DRSELA
Trigger: TGCGAGCTCAGATCTGTCCAAAGCGTTGTGTCTGTC...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGACCTCAGTGTTGCCCTTaGACCCTCCAAGACTCTCAT +
Preference number: 5 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGPQCCP*TLQDSH
Trigger: ATGAGAGTCTTGGAGGGTCAAAGGGCAACACTGAGG...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGATGGCCCATGGCTTGTTaGGACATGGACTGGGGCAGC +
Preference number: 5 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGWPMAC*DMDWGS
Trigger: GCTGCCCCAGTCCATGTCCAAACAAGCCATGGGCCA...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGTGCAAGGCAGTTGAGTaGTTCCTGTTAGTGTTTTGG +
Preference number: 5 (lower is better)
Translates to: GREPVSPHQRPCSFGSHECKAVE*FLLVFW
Trigger: CCAAAACACTAACAGGAACAACTCAACTGCCTTGCA...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS TCA 90 bp CTTCGTGCCAGTCTTTCTTTTCTGCTTTTGAGACACAGGCGCACTTaGAGTCCAGGTAGGAGGCAAAGCAGAGGTAGTGGTAGAAGAGTC +
Preference number: 5 (lower is better)
Translates to: LRASLSFLLLRHRRT*SPGRRQSRGSGRRV
Trigger: GACTCTTCTACCACTACCTCTGCTTTGCCTCCTACCTGGACTTCAAGTGCGCCTGTGTCTCAAAAGCAGAAAAGAAAGACTGGCACGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS GCA 90 bp GATGTGGGCCCCTCTGTAACAGAATCAGGAGGGCAGCTAGCTAACTaGAAGGCAGTTGAGTTGTTCCTGTTAGTGTTTTGGGACTCAACA +
Preference number: 5 (lower is better)
Translates to: DVGPSVTESGGQLAN*KAVELFLLVFWDST
Trigger: TGTTGAGTCCCAAAACACTAACAGGAACAACTCAACTGCCTTGCAGTTAGCTAGCTGCCCTCCTGATTCTGTTACAGAGGGGCCCACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp GGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGATCAAATGGTGGAGATaGGAAAGCCCACTGAACATA +
Preference number: 5 (lower is better)
Translates to: GREPVSPHQRPCSFGSHEIKWWR*ESPLNI
Trigger: TATGTTCAGTGGGCTTTCCAATCTCCACCATTTGAT...CTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCCACAGCAACTCACAATaGCAATGCAAGGGGTTTCCA +
Preference number: 5 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGHSNSQ*QCKGFP
Trigger: TGGAAACCCCTTGCATTGCAATTGTGAGTTGCTGTG...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp GACGGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCTCAGTGTTGCCCTTaGACCCTCCAAGACTCTCAT +
Preference number: 5 (lower is better)
Translates to: DGQRTICGSPFSSFHYWFPQCCP*TLQDSH
Trigger: ATGAGAGTCTTGGAGGGTCAAAGGGCAACACTGAGG...GAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACCGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGAGTGAAGATCCACGGTTaGTGTTGCTTCCCCTGCCGG +
Preference number: 5 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGVKIHG*CCFPCR
Trigger: CCGGCAGGGGAAGCAACACAAACCGTGGATCTTCAC...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATGGGTCTCCTCGAGCTTaGCACCTCAGTGTTGCCCTT +
Preference number: 5 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYGSPRA*HLSVAL
Trigger: AAGGGCAACACTGAGGTGCAAAGCTCGAGGAGACCC...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCACACCAGAGATCGTGTaGCATTTGAAATCAGCTTCC +
Preference number: 5 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGTPEIV*HLKSAS
Trigger: GGAAGCTGATTTCAAATGCAACACGATCTCTGGTGT...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TTTGCTGTATATCAGAGGGCTTGTATATTAGCCTTAGGGAAGGAGAAGGCACTCGACAGACACAACGCTTaGGACAGATCTGAGCTCGCA +
Preference number: 5 (lower is better)
Translates to: FAVYQRACILALGKEKALDRHNA*DRSELA
Trigger: TGCGAGCTCAGATCTGTCCAAAGCGTTGTGTCTGTC...GAGTGCCTTCTCCTTCCCTAAGGCTAATATACAAGCCCTCTGATATACAGCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp GACGGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCACAGCAACTCACAATaGCAATGCAAGGGGTTTCCA +
Preference number: 5 (lower is better)
Translates to: DGQRTICGSPFSSFHYWFHSNSQ*QCKGFP
Trigger: TGGAAACCCCTTGCATTGCAATTGTGAGTTGCTGTG...GAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACCGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp TTTGCTGTATATCAGAGGGCTTGTATATTAGCCTTAGGGAAGGAGAAGGCACTCCTTTGCACCTCAGTGTaGCCCTTTGACCCTCCAAGA +
Preference number: 5 (lower is better)
Translates to: FAVYQRACILALGKEKALLCTSV*PFDPPR
Trigger: TCTTGGAGGGTCAAAGGGCAACACTGAGGTGCAAAG...GAGTGCCTTCTCCTTCCCTAAGGCTAATATACAAGCCCTCTGATATACAGCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAACCATTGTACTGGATTaGAAACATACGGATTCCGGG +
Preference number: 5 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGTIVLD*KHTDSG
Trigger: CCCGGAATCCGTATGTTTCAAATCCAGTACAATGGT...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCCTAACCTTCGTGACCTaGTGTTGCCCATTATTGTTA +
Preference number: 5 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGLTFVT*CCPLLL
Trigger: TAACAATAATGGGCAACACAAGGTCACGAAGGTTAG...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGCTTGGTATGTGCTCTTaGAGATGTGGGCCCCTCTGT +
Preference number: 5 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQLGMCS*RCGPLC
Trigger: ACAGAGGGGCCCACATCTCAAAGAGCACATACCAAG...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS TCA 90 bp CAAAGCAGAGGTAGTGGTAGAAGAGTCCTGACTCGAACATGTTTCTaGAGACTGAATTGCATTGTCACTGGCAACTTTACAGCACTGGGC +
Preference number: 5 (lower is better)
Translates to: QSRGSGRRVLTRTCF*RLNCIVTGNFTALG
Trigger: GCCCAGTGCTGTAAAGTTGCCAGTGACAATGCAATTCAGTCTTCAGAAACATGTTCGAGTCAGGACTCTTCTACCACTACCTCTGCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS GCA 90 bp TTCCTGTTAGTGTTTTGGGACTCAACATTTGTGACAGCTTCACTCTaGGGCTCAGCACTTGGCTTCGTGCCAGTCTTTCTTTTCTGCTTT +
Preference number: 5 (lower is better)
Translates to: FLLVFWDSTFVTASL*GSALGFVPVFLFCF
Trigger: AAAGCAGAAAAGAAAGACTGGCACGAAGCCAAGTGCTGAGCCGCAGAGTGAAGCTGTCACAAATGTTGAGTCCCAAAACACTAACAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAATATTTGTAACAAAATaGTCTGCCAGCCGTAGCTCC +
Preference number: 5 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGIFVTK*SASRSS
Trigger: GGAGCTACGGCTGGCAGACAATTTTGTTACAAATAT...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGAACTCTTCCTCAGGAATaGACCAAAAATAACGACCAG +
Preference number: 5 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGTLPQE*TKNNDQ
Trigger: CTGGTCGTTATTTTTGGTCAATTCCTGAGGAAGAGT...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp GACGGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCGAGATCGTGTTGCATTaGAAATCAGCTTCCCTTCAG +
Preference number: 5 (lower is better)
Translates to: DGQRTICGSPFSSFHYWFEIVLH*KSASLQ
Trigger: CTGAAGGGAAGCTGATTTCAAATGCAACACGATCTC...GAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACCGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp GACGGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCACCATTGTACTGGATTaGAAACATACGGATTCCGGG +
Preference number: 5 (lower is better)
Translates to: DGQRTICGSPFSSFHYWFTIVLD*KHTDSG
Trigger: CCCGGAATCCGTATGTTTCAAATCCAGTACAATGGT...GAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACCGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGACTTCGTGACCTTGTGTaGCCCATTATTGTTACAAAC +
Preference number: 5 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGLRDLV*PIIVTN
Trigger: GTTTGTAACAATAATGGGCAACACAAGGTCACGAAG...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCTTTCTGAAGACTGAATaGCATTGTCACTGGCAACTT +
Preference number: 5 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGFLKTE*HCHWQL
Trigger: AAGTTGCCAGTGACAATGCAATTCAGTCTTCAGAAA...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp GACGGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCTGCAAGGCAGTTGAGTaGTTCCTGTTAGTGTTTTGG +
Preference number: 5 (lower is better)
Translates to: DGQRTICGSPFSSFHYWFCKAVE*FLLVFW
Trigger: CCAAAACACTAACAGGAACAACTCAACTGCCTTGCA...GAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACCGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS TCA 90 bp GATGTCAAGTGTCCCGTTATCATACACCAGAGATCGTGTTGCATTTaGAATCAGCTTCCCTTCAGGGGAAATCCAATGAATCGCAGGTTC +
Preference number: 5 (lower is better)
Translates to: DVKCPVIIHQRSCCI*NQLPFRGNPMNRRF
Trigger: GAACCTGCGATTCATTGGATTTCCCCTGAAGGGAAGCTGATTTCAAATGCAACACGATCTCTGGTGTATGATAACGGGACACTTGACATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CCA 90 bp AAGGGTTGCAAGATTTGGAGACAAAATCTGACAGACACAACGCTTTaGACAGATCTGAGCTCGCACAGCTATGCCAATGAGAAACAGGTA +
Preference number: 5 (lower is better)
Translates to: KGCKIWRQNLTDTTL*TDLSSHSYANEKQV
Trigger: TACCTGTTTCTCATTGGCATAGCTGTGCGAGCTCAGATCTGTCCAAAGCGTTGTGTCTGTCAGATTTTGTCTCCAAATCTTGCAACCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp GACGGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCTCTTGGCACAAAGGGTaGCAAGATTTGGAGACAAAA +
Preference number: 5 (lower is better)
Translates to: DGQRTICGSPFSSFHYWFSWHKG*QDLETK
Trigger: TTTTGTCTCCAAATCTTGCAACCCTTTGTGCCAAGA...GAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACCGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGATTCTTCTGTCAATGTTaGGTGGAACAAATAGAAGCC +
Preference number: 5 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGFFCQC*VEQIEA
Trigger: GGCTTCTATTTGTTCCACCAAACATTGACAGAAGAA...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp GACGGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCATATTTGTAACAAAATaGTCTGCCAGCCGTAGCTCC +
Preference number: 5 (lower is better)
Translates to: DGQRTICGSPFSSFHYWFIFVTK*SASRSS
Trigger: GGAGCTACGGCTGGCAGACAATTTTGTTACAAATAT...GAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACCGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp GACGGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCATCAAATGGTGGAGATaGGAAAGCCCACTGAACATA +
Preference number: 5 (lower is better)
Translates to: DGQRTICGSPFSSFHYWFIKWWR*ESPLNI
Trigger: TATGTTCAGTGGGCTTTCCAATCTCCACCATTTGAT...GAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACCGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTTCTAGCCGAGTCATCTaGTGCAAGTGGGAGAAAGTA +
Preference number: 5 (lower is better)
Translates to: SEDNLWKSILLFPLLVPISSRVI*CKWEKV
Trigger: TACTTTCTCCCACTTGCACAAGATGACTCGGCTAGA...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGGTGAAGATCCACGGTTaGTGTTGCTTCCCCTGCCGG +
Preference number: 5 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLVKIHG*CCFPCR
Trigger: CCGGCAGGGGAAGCAACACAAACCGTGGATCTTCAC...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp AACCATGTTGGGAGGGAGCCAGTTTCACCACATCAGAGACCTTGTAGCTTTGGCCACCACGATTTTATCTaGACTCATTTTTGTATCACC +
Preference number: 5 (lower is better)
Translates to: NHVGREPVSPHQRPCSFGHHDFI*THFCIT
Trigger: GGTGATACAAAAATGAGTCAAGATAAAATCGTGGTG...GCCAAAGCTACAAGGTCTCTGATGTGGTGAAACTGGCTCCCTCCCAACATGGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TTTGCTGTATATCAGAGGGCTTGTATATTAGCCTTAGGGAAGGAGAAGGCACTCATGCTGTTGACGAAGTaGCTTCTGCCACCACGATTT +
Preference number: 5 (lower is better)
Translates to: FAVYQRACILALGKEKALMLLTK*LLPPRF
Trigger: AAATCGTGGTGGCAGAAGCAACTTCGTCAACAGCAT...GAGTGCCTTCTCCTTCCCTAAGGCTAATATACAAGCCCTCTGATATACAGCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp TCACCACATCAGAGACCTTGTAGCTTTGGCTCCCATGAGCAATTCGTTCTGGGATTGTGTTGCCCATTATaGTTACAAACCTTATACCGG +
Preference number: 5 (lower is better)
Translates to: SPHQRPCSFGSHEQFVLGLCCPL*LQTLYR
Trigger: CCGGTATAAGGTTTGTAACAATAATGGGCAACACAA...TCCCAGAACGAATTGCTCATGGGAGCCAAAGCTACAAGGTCTCTGATGTGGTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGAAATAGAAGCCCTTTCTaGGCACAAAGGGTTGCAAGA +
Preference number: 5 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGNRSPF*AQRVAR
Trigger: TCTTGCAACCCTTTGTGCCAAGAAAGGGCTTCTATT...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp GACGGTCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCTTCTTCTGTCAATGTTaGGTGGAACAAATAGAAGCC +
Preference number: 5 (lower is better)
Translates to: DGQRTICGSPFSSFHYWFFFCQC*VEQIEA
Trigger: GGCTTCTATTTGTTCCACCAAACATTGACAGAAGAA...GAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGACCGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp TTTGCTGTATATCAGAGGGCTTGTATATTAGCCTTAGGGAAGGAGAAGGCACTCACACCAGAGATCGTGTaGCATTTGAAATCAGCTTCC +
Preference number: 5 (lower is better)
Translates to: FAVYQRACILALGKEKALTPEIV*HLKSAS
Trigger: GGAAGCTGATTTCAAATGCAACACGATCTCTGGTGT...GAGTGCCTTCTCCTTCCCTAAGGCTAATATACAAGCCCTCTGATATACAGCAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS TCA 90 bp TGCAAGTGGGAGAAAGTACCCTTAGGAATGTTGTCAATCATATTGTaGTCCAAACTAAGGGTGTGCAAGCTCACCATCTTCTCTACAGCA +
Preference number: 5 (lower is better)
Translates to: CKWEKVPLGMLSIIL*SKLRVCKLTIFSTA
Trigger: TGCTGTAGAGAAGATGGTGAGCTTGCACACCCTTAGTTTGGATCACAATATGATTGACAACATTCCTAAGGGTACTTTCTCCCACTTGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS TCA 90 bp TTGACTCATTTTTGTATCACCATTACTACTGCTAGCATTCGAGCCTaGCTTAGTGGATGTGGAGATATCAGAAGAACCAGGATCAGGCTC +
Preference number: 5 (lower is better)
Translates to: LTHFCITITTASIRA*LSGCGDIRRTRIRL
Trigger: GAGCCTGATCCTGGTTCTTCTGATATCTCCACATCCACTAAGTCAGGCTCGAATGCTAGCAGTAGTAATGGTGATACAAAAATGAGTCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TTTGCTGTATATCAGAGGGCTTGTATATTAGCCTTAGGGAAGGAGAAGGCACTCCTTCGTGACCTTGTGTaGCCCATTATTGTTACAAAC +
Preference number: 5 (lower is better)
Translates to: FAVYQRACILALGKEKALLRDLV*PIIVTN
Trigger: GTTTGTAACAATAATGGGCAACACAAGGTCACGAAG...GAGTGCCTTCTCCTTCCCTAAGGCTAATATACAAGCCCTCTGATATACAGCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGCTAACCTTCGTGACCTaGTGTTGCCCATTATTGTTA +
Preference number: 5 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQLTFVT*CCPLLL
Trigger: TAACAATAATGGGCAACACAAGGTCACGAAGGTTAG...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp GGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGGAGTTCCTGTTAGTGTTTaGGGACTCAACATTTGTGAC +
Preference number: 5 (lower is better)
Translates to: GSPFSSFHYWFPFTNWSGVPVSV*GLNICD
Trigger: GTCACAAATGTTGAGTCCCAAAACACTAACAGGAAC...TCCTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGCTTGGTATGTGCTCTTaGAGATGTGGGCCCCTCTGT +
Preference number: 5 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLLGMCS*RCGPLC
Trigger: ACAGAGGGGCCCACATCTCAAAGAGCACATACCAAG...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS CCA 90 bp CAGTTCTTCTGTCAATGTTTGGTGGAACAAATAGAAGCCCTTTCTTaGCACAAAGGGTTGCAAGATTTGGAGACAAAATCTGACAGACAC +
Preference number: 5 (lower is better)
Translates to: QFFCQCLVEQIEALS*HKGLQDLETKSDRH
Trigger: GTGTCTGTCAGATTTTGTCTCCAAATCTTGCAACCCTTTGTGCCAAGAAAGGGCTTCTATTTGTTCCACCAAACATTGACAGAAGAACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CCA 90 bp AGGACAGGTCCAGCTCCTCAAGGGCAAAAACATCATCGAAGGCTGTaGAAGAAATTAAAGTCAGCTGATTGTTGTTCAATATCAAATGGT +
Preference number: 5 (lower is better)
Translates to: RTGPAPQGQKHHRRL*KKLKSADCCSISNG
Trigger: ACCATTTGATATTGAACAACAATCAGCTGACTTTAATTTCTTCCACAGCCTTCGATGATGTTTTTGCCCTTGAGGAGCTGGACCTGTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TCAGAGGACAATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTACCAAGCTGGTCATATaGGCAAAATCTTTCCTTTTG +
Preference number: 5 (lower is better)
Translates to: SEDNLWKSILLFPLLVPITKLVI*AKSFLL
Trigger: CAAAAGGAAAGATTTTGCCAATATGACCAGCTTGGT...AATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGATTGTCCTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATACTCTTCCTCAGGAATaGACCAAAAATAACGACCAG +
Preference number: 5 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYTLPQE*TKNNDQ
Trigger: CTGGTCGTTATTTTTGGTCAATTCCTGAGGAAGAGT...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGTTGACCAGAAATGTTTaGCTCGTAGGAGGTATCATT +
Preference number: 5 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQLTRNV*LVGGII
Trigger: AATGATACCTCCTACGAGCAAAACATTTCTGGTCAA...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp GTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTCAGTTGTGTTGCCCATTATaGTTACAAACCTTATACCGG +
Preference number: 5 (lower is better)
Translates to: VEVHSPLSTIGSHSLIGQLCCPL*LQTLYR
Trigger: CCGGTATAAGGTTTGTAACAATAATGGGCAACACAA...CTGACCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS TCA 90 bp AGGGCAAAAACATCATCGAAGGCTGTGGAAGAAATTAAAGTCAGCTaGTTGTTGTTCAATATCAAATGGTGGAGATTGGAAAGCCCACTG +
Preference number: 5 (lower is better)
Translates to: RAKTSSKAVEEIKVS*LLFNIKWWRLESPL
Trigger: CAGTGGGCTTTCCAATCTCCACCATTTGATATTGAACAACAATCAGCTGACTTTAATTTCTTCCACAGCCTTCGATGATGTTTTTGCCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGTCTAGCCGAGTCATCTaGTGCAAGTGGGAGAAAGTA +
Preference number: 5 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLSSRVI*CKWEKV
Trigger: TACTTTCTCCCACTTGCACAAGATGACTCGGCTAGA...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGATGCTGTTGACGAAGTaGCTTCTGCCACCACGATTT +
Preference number: 5 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLMLLTK*LLPPRF
Trigger: AAATCGTGGTGGCAGAAGCAACTTCGTCAACAGCAT...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp ATCTGTGGAAGTCCATTCTCCTCTTTCCACTATTGGTTCCCATTCACTAATTGGTTTCTGAAGACTGAATaGCATTGTCACTGGCAACTT +
Preference number: 5 (lower is better)
Translates to: ICGSPFSSFHYWFPFTNWFLKTE*HCHWQL
Trigger: AAGTTGCCAGTGACAATGCAATTCAGTCTTCAGAAA...CCAATTAGTGAATGGGAACCAATAGTGGAAAGAGGAGAATGGACTTCCACAGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS-3UTR CAA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGGAGATCGTGTTGCATTaGAAATCAGCTTCCCTTCAG +
Preference number: 5 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLEIVLH*KSASLQ
Trigger: CTGAAGGGAAGCTGATTTCAAATGCAACACGATCTC...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp CTTGGCCCTGTGAGTTCTGCTTTTGATTTGCTGTATATCAGAGGGCTTGTATATCACCACGATTTTATCTaGACTCATTTTTGTATCACC +
Preference number: 5 (lower is better)
Translates to: LGPVSSAFDLLYIRGLVYHHDFI*THFCIT
Trigger: GGTGATACAAAAATGAGTCAAGATAAAATCGTGGTG...ATATACAAGCCCTCTGATATACAGCAAATCAAAAGCAGAACTCACAGGGCCAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS GCA 90 bp AGCTTTTGCAGTTTATTTGATGTTACATCTAGCCGAGTCATCTTGTaGAAGTGGGAGAAAGTACCCTTAGGAATGTTGTCAATCATATTG +
Preference number: 5 (lower is better)
Translates to: SFCSLFDVTSSRVIL*KWEKVPLGMLSIIL
Trigger: CAATATGATTGACAACATTCCTAAGGGTACTTTCTCCCACTTGCACAAGATGACTCGGCTAGATGTAACATCAAATAAACTGCAAAAGCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CCA 90 bp CTATTCAAATGCAGTGCTCTCAAATTTCGTAGATCAGCAAAAGCATaGGGTGTAATAAAACTTATTGTATTCCTGGATAGAGTCAGGTCC +
Preference number: 5 (lower is better)
Translates to: LFKCSALKFRRSAKA*GVIKLIVFLDRVRS
Trigger: GGACCTGACTCTATCCAGGAATACAATAAGTTTTATTACACCCCATGCTTTTGCTGATCTACGAAATTTGAGAGCACTGCATTTGAATAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGTCTTGGCACAAAGGGTaGCAAGATTTGGAGACAAAA +
Preference number: 5 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLSWHKG*QDLETK
Trigger: TTTTGTCTCCAAATCTTGCAACCCTTTGTGCCAAGA...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGGTTCCTGTTAGTGTTTaGGGACTCAACATTTGTGAC +
Preference number: 5 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLVPVSV*GLNICD
Trigger: GTCACAAATGTTGAGTCCCAAAACACTAACAGGAAC...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGACCAAGCTGGTCATATaGGCAAAATCTTTCCTTTTG +
Preference number: 5 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLTKLVI*AKSFLL
Trigger: CAAAAGGAAAGATTTTGCCAATATGACCAGCTTGGT...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS-3UTR CAA 90 bp TACAGTCTGTTAAATCATGGATGGCAATGTAGGATGGATTTGATACAGAACTTGTTGACCAGAAATGTTTaGCTCGTAGGAGGTATCATT +
Preference number: 5 (lower is better)
Translates to: YSLLNHGWQCRMDLIQNLLTRNV*LVGGII
Trigger: AATGATACCTCCTACGAGCAAAACATTTCTGGTCAA...CAAGTTCTGTATCAAATCCATCCTACATTGCCATCCATGATTTAACAGACTGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS CAA 72 bp CAGCACTGGGCATTCTCTTCATGGCCCATGGCTTGTTaGGACATGGACTGGGGCAGCGTGACACTGCAGCCT +
Preference number: 6 (lower is better)
Translates to: QHWAFSSWPMAC*DMDWGSVTLQP
Trigger: AGGCTGCAGTGTCACGCTGCCCCAGTCCATGTCCAAACAAGCCATGGGCCATGAAGAGAATGCCCAGTGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS GCA 72 bp AAAGAGTCCTTTAAACCTCCACTGAGGGAGGCCCTGTaGCTGGCTCTAGATCCCTCAGCAGGCACAGTGAGA +
Preference number: 6 (lower is better)
Translates to: KESFKPPLREAL*LALDPSAGTVR
Trigger: TCTCACTGTGCCTGCTGAGGGATCTAGAGCCAGGCACAGGGCCTCCCTCAGTGGAGGTTTAAAGGACTCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS GCA 72 bp TCCAATGAATCGCAGGTTCAGGGTCTCCTCGAGCTTTaGACCTCAGTGTTGCCCTTTGACCCTCCAAGACTC +
Preference number: 6 (lower is better)
Translates to: SNESQVQGLLEL*TSVLPFDPPRL
Trigger: GAGTCTTGGAGGGTCAAAGGGCAACACTGAGGTGCAAAGCTCGAGGAGACCCTGAACCTGCGATTCATTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CCA 72 bp TCACTGGCAACTTTACAGCACTGGGCATTCTCTTCATaGCCCATGGCTTGTTTGGACATGGACTGGGGCAGC +
Preference number: 6 (lower is better)
Translates to: SLATLQHWAFSS*PMACLDMDWGS
Trigger: GCTGCCCCAGTCCATGTCCAAACAAGCCATGGGCCATGAAGAGAATGCCCAGTGCTGTAAAGTTGCCAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 72 bp TTTACAGCACTGGGCATTCTCTTCATGGCCCATGGCTaGTTTGGACATGGACTGGGGCAGCGTGACACTGCA +
Preference number: 6 (lower is better)
Translates to: FTALGILFMAHG*FGHGLGQRDTA
Trigger: TGCAGTGTCACGCTGCCCCAGTCCATGTCCAAACAAGCCATGGGCCATGAAGAGAATGCCCAGTGCTGTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 90 bp CGCAGGTTCAGGGTCTCCTCGAGCTTTGCACCTCAGTGTTGCCCTTaGACCCTCCAAGACTCTCATCTCATGTGTATGACGAGTGATGAG +
Preference number: 6 (lower is better)
Translates to: RRFRVSSSFAPQCCP*TLQDSHLMCMTSDE
Trigger: CTCATCACTCGTCATACACATGAGATGAGAGTCTTGGAGGGTCAAAGGGCAACACTGAGGTGCAAAGCTCGAGGAGACCCTGAACCTGCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS GCA 72 bp AGGTTCAGGGTCTCCTCGAGCTTTGCACCTCAGTGTTaGCCTTTGACCCTCCAAGACTCTCATCTCATGTGT +
Preference number: 6 (lower is better)
Translates to: RFRVSSSFAPQC*PLTLQDSHLMC
Trigger: ACACATGAGATGAGAGTCTTGGAGGGTCAAAGGGCAACACTGAGGTGCAAAGCTCGAGGAGACCCTGAACCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 72 bp AGGGTCTCCTCGAGCTTTGCACCTCAGTGTTGCCCTTaGACCCTCCAAGACTCTCATCTCATGTGTATGACG +
Preference number: 6 (lower is better)
Translates to: RVSSSFAPQCCP*TLQDSHLMCMT
Trigger: CGTCATACACATGAGATGAGAGTCTTGGAGGGTCAAAGGGCAACACTGAGGTGCAAAGCTCGAGGAGACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 90 bp CTCAGCAGGCACAGTGAGAAACTTACTTGGCTTGGTATGTGCTCTTaGAGATGTGGGCCCCTCTGTAACAGAATCAGGAGGGCAGCTAGC +
Preference number: 6 (lower is better)
Translates to: LSRHSEKLTWLGMCS*RCGPLCNRIRRAAS
Trigger: GCTAGCTGCCCTCCTGATTCTGTTACAGAGGGGCCCACATCTCAAAGAGCACATACCAAGCCAAGTAAGTTTCTCACTGTGCCTGCTGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS CAA 90 bp AATGAATCGCAGGTTCAGGGTCTCCTCGAGCTTTGCACCTCAGTGTaGCCCTTTGACCCTCCAAGACTCTCATCTCATGTGTATGACGAG +
Preference number: 6 (lower is better)
Translates to: NESQVQGLLELCTSV*PFDPPRLSSHVYDE
Trigger: CTCGTCATACACATGAGATGAGAGTCTTGGAGGGTCAAAGGGCAACACTGAGGTGCAAAGCTCGAGGAGACCCTGAACCTGCGATTCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 90 bp CATGGCTTGTTTGGACATGGACTGGGGCAGCGTGACACTGCAGCCTaGCATCTGAGCCCCATTAGTCTGAGAATAAACGTTGCTAACCTT +
Preference number: 6 (lower is better)
Translates to: HGLFGHGLGQRDTAA*HLSPISLRINVANL
Trigger: AAGGTTAGCAACGTTTATTCTCAGACTAATGGGGCTCAGATGCAAGGCTGCAGTGTCACGCTGCCCCAGTCCATGTCCAAACAAGCCATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CCA 72 bp TCTAGATCCCTCAGCAGGCACAGTGAGAAACTTACTTaGCTTGGTATGTGCTCTTTGAGATGTGGGCCCCTC +
Preference number: 6 (lower is better)
Translates to: SRSLSRHSEKLT*LGMCSLRCGPL
Trigger: GAGGGGCCCACATCTCAAAGAGCACATACCAAGCCAAGTAAGTTTCTCACTGTGCCTGCTGAGGGATCTAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS TCA 72 bp AAAACTCAATGCAAAAGTCGATGGGCTTATGATTCCTaGGGTGGCCAGCACCTGTGCTCGCTGAAACAGAGG +
Preference number: 6 (lower is better)
Translates to: KTQCKSRWAYDS*GGQHLCSLKQR
Trigger: CCTCTGTTTCAGCGAGCACAGGTGCTGGCCACCTCAGGAATCATAAGCCCATCGACTTTTGCATTGAGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS TCA 72 bp TTCCACCAAAACTCAATGCAAAAGTCGATGGGCTTATaGTTCCTGAGGTGGCCAGCACCTGTGCTCGCTGAA +
Preference number: 6 (lower is better)
Translates to: FHQNSMQKSMGL*FLRWPAPVLAE
Trigger: TTCAGCGAGCACAGGTGCTGGCCACCTCAGGAATCATAAGCCCATCGACTTTTGCATTGAGTTTTGGTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS GCA 72 bp GTGTTTTGGGACTCAACATTTGTGACAGCTTCACTCTaGGGCTCAGCACTTGGCTTCGTGCCAGTCTTTCTT +
Preference number: 6 (lower is better)
Translates to: VFWDSTFVTASL*GSALGFVPVFL
Trigger: AAGAAAGACTGGCACGAAGCCAAGTGCTGAGCCGCAGAGTGAAGCTGTCACAAATGTTGAGTCCCAAAACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS TCA 72 bp AGTCTTTCTTTTCTGCTTTTGAGACACAGGCGCACTTaGAGTCCAGGTAGGAGGCAAAGCAGAGGTAGTGGT +
Preference number: 6 (lower is better)
Translates to: SLSFLLLRHRRT*SPGRRQSRGSG
Trigger: ACCACTACCTCTGCTTTGCCTCCTACCTGGACTTCAAGTGCGCCTGTGTCTCAAAAGCAGAAAAGAAAGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS TCA 72 bp ACAGTGAGAAACTTACTTGGCTTGGTATGTGCTCTTTaGGATGTGGGCCCCTCTGTAACAGAATCAGGAGGG +
Preference number: 6 (lower is better)
Translates to: TVRNLLGLVCAL*DVGPSVTESGG
Trigger: CCCTCCTGATTCTGTTACAGAGGGGCCCACATCTCAAAGAGCACATACCAAGCCAAGTAAGTTTCTCACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS TCA 72 bp TTAGTCAGCAAAGCATTTGGCTTGGTATGTGCTCTTTaGGATGTGGGCCCCTCTGTAACAGAATCAGGAGGG +
Preference number: 6 (lower is better)
Translates to: LVSKAFGLVCAL*DVGPSVTESGG
Trigger: CCCTCCTGATTCTGTTACAGAGGGGCCCACATCTCAAAGAGCACATACCAAGCCAAATGCTTTGCTGACTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS GCA 72 bp AGCAGGCACAGTGAGAAACTTACTTGGCTTGGTATGTaGTCTTTGAGATGTGGGCCCCTCTGTAACAGAATC +
Preference number: 6 (lower is better)
Translates to: SRHSEKLTWLGM*SLRCGPLCNRI
Trigger: GATTCTGTTACAGAGGGGCCCACATCTCAAAGAGCACATACCAAGCCAAGTAAGTTTCTCACTGTGCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS CAA 72 bp CACAGTGAGAAACTTACTTGGCTTGGTATGTGCTCTTaGAGATGTGGGCCCCTCTGTAACAGAATCAGGAGG +
Preference number: 6 (lower is better)
Translates to: HSEKLTWLGMCS*RCGPLCNRIRR
Trigger: CCTCCTGATTCTGTTACAGAGGGGCCCACATCTCAAAGAGCACATACCAAGCCAAGTAAGTTTCTCACTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000055815.14
CDS CAA 90 bp GTGCTCGCTGAAACAGAGGGTCAGGAGGCAGCTTTTGCAGTTTATTaGATGTTACATCTAGCCGAGTCATCTTGTGCAAGTGGGAGAAAG +
Preference number: 6 (lower is better)
Translates to: VLAETEGQEAAFAVY*MLHLAESSCASGRK
Trigger: CTTTCTCCCACTTGCACAAGATGACTCGGCTAGATGTAACATCAAATAAACTGCAAAAGCTGCCTCCTGACCCTCTGTTTCAGCGAGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 72 bp ATTAGTCAGCAAAGCATTTGGCTTGGTATGTGCTCTTaGAGATGTGGGCCCCTCTGTAACAGAATCAGGAGG +
Preference number: 6 (lower is better)
Translates to: ISQQSIWLGMCS*RCGPLCNRIRR
Trigger: CCTCCTGATTCTGTTACAGAGGGGCCCACATCTCAAAGAGCACATACCAAGCCAAATGCTTTGCTGACTAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000119481.2
CDS CAA 90 bp GTAACAGAATCAGGAGGGCAGCTAGCTAACTGCAAGGCAGTTGAGTaGTTCCTGTTAGTGTTTTGGGACTCAACATTTGTGACAGCTTCA +
Preference number: 6 (lower is better)
Translates to: VTESGGQLANCKAVE*FLLVFWDSTFVTAS
Trigger: TGAAGCTGTCACAAATGTTGAGTCCCAAAACACTAACAGGAACAACTCAACTGCCTTGCAGTTAGCTAGCTGCCCTCCTGATTCTGTTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CCA 72 bp AAGATTTGGAGACAAAATCTGACAGACACAACGCTTTaGACAGATCTGAGCTCGCACAGCTATGCCAATGAG +
Preference number: 6 (lower is better)
Translates to: KIWRQNLTDTTL*TDLSSHSYANE
Trigger: CTCATTGGCATAGCTGTGCGAGCTCAGATCTGTCCAAAGCGTTGTGTCTGTCAGATTTTGTCTCCAAATCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 90 bp GTGGAACAAATAGAAGCCCTTTCTTGGCACAAAGGGTTGCAAGATTaGGAGACAAAATCTGACAGACACAACGCTTTGGACAGATCTGAG +
Preference number: 6 (lower is better)
Translates to: VEQIEALSWHKGLQD*ETKSDRHNALDRSE
Trigger: CTCAGATCTGTCCAAAGCGTTGTGTCTGTCAGATTTTGTCTCCAAATCTTGCAACCCTTTGTGCCAAGAAAGGGCTTCTATTTGTTCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 72 bp GAAACAGAGGGTCAGGAGGCAGCTTTTGCAGTTTATTaGATGTTACATCTAGCCGAGTCATCTTGTGCAAGT +
Preference number: 6 (lower is better)
Translates to: ETEGQEAAFAVY*MLHLAESSCAS
Trigger: ACTTGCACAAGATGACTCGGCTAGATGTAACATCAAATAAACTGCAAAAGCTGCCTCCTGACCCTCTGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 72 bp AAGAGTCCTGACTCGAACATGTTTCTGAAGACTGAATaGCATTGTCACTGGCAACTTTACAGCACTGGGCAT +
Preference number: 6 (lower is better)
Translates to: KSPDSNMFLKTE*HCHWQLYSTGH
Trigger: ATGCCCAGTGCTGTAAAGTTGCCAGTGACAATGCAATTCAGTCTTCAGAAACATGTTCGAGTCAGGACTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 90 bp CAATGTTTGGTGGAACAAATAGAAGCCCTTTCTTGGCACAAAGGGTaGCAAGATTTGGAGACAAAATCTGACAGACACAACGCTTTGGAC +
Preference number: 6 (lower is better)
Translates to: QCLVEQIEALSWHKG*QDLETKSDRHNALD
Trigger: GTCCAAAGCGTTGTGTCTGTCAGATTTTGTCTCCAAATCTTGCAACCCTTTGTGCCAAGAAAGGGCTTCTATTTGTTCCACCAAACATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS TCA 72 bp TTTTGTATCACCATTACTACTGCTAGCATTCGAGCCTaGCTTAGTGGATGTGGAGATATCAGAAGAACCAGG +
Preference number: 6 (lower is better)
Translates to: FCITITTASIRA*LSGCGDIRRTR
Trigger: CCTGGTTCTTCTGATATCTCCACATCCACTAAGTCAGGCTCGAATGCTAGCAGTAGTAATGGTGATACAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS TCA 72 bp GGTAGTGGTAGAAGAGTCCTGACTCGAACATGTTTCTaGAGACTGAATTGCATTGTCACTGGCAACTTTACA +
Preference number: 6 (lower is better)
Translates to: GSGRRVLTRTCF*RLNCIVTGNFT
Trigger: TGTAAAGTTGCCAGTGACAATGCAATTCAGTCTTCAGAAACATGTTCGAGTCAGGACTCTTCTACCACTACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 90 bp AGAGTCAGGTCCACCAAGCTGGTCATATTGGCAAAATCTTTCCTTTaGATATTTGTAACAAAATTGTCTGCCAGCCGTAGCTCCACAGTT +
Preference number: 6 (lower is better)
Translates to: RVRSTKLVILAKSFL*IFVTKLSASRSSTV
Trigger: AACTGTGGAGCTACGGCTGGCAGACAATTTTGTTACAAATATCAAAAGGAAAGATTTTGCCAATATGACCAGCTTGGTGGACCTGACTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS TCA 72 bp GAGAAAGTACCCTTAGGAATGTTGTCAATCATATTGTaGTCCAAACTAAGGGTGTGCAAGCTCACCATCTTC +
Preference number: 6 (lower is better)
Translates to: EKVPLGMLSIIL*SKLRVCKLTIF
Trigger: GAAGATGGTGAGCTTGCACACCCTTAGTTTGGATCACAATATGATTGACAACATTCCTAAGGGTACTTTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 72 bp TGCAGTTTATTTGATGTTACATCTAGCCGAGTCATCTaGTGCAAGTGGGAGAAAGTACCCTTAGGAATGTTG +
Preference number: 6 (lower is better)
Translates to: CSLFDVTSSRVI*CKWEKVPLGML
Trigger: CAACATTCCTAAGGGTACTTTCTCCCACTTGCACAAGATGACTCGGCTAGATGTAACATCAAATAAACTGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS GCA 72 bp AGTTTATTTGATGTTACATCTAGCCGAGTCATCTTGTaGAAGTGGGAGAAAGTACCCTTAGGAATGTTGTCA +
Preference number: 6 (lower is better)
Translates to: SLFDVTSSRVIL*KWEKVPLGMLS
Trigger: TGACAACATTCCTAAGGGTACTTTCTCCCACTTGCACAAGATGACTCGGCTAGATGTAACATCAAATAAACT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CCA 72 bp TTTGATGTTACATCTAGCCGAGTCATCTTGTGCAAGTaGGAGAAAGTACCCTTAGGAATGTTGTCAATCATA +
Preference number: 6 (lower is better)
Translates to: FDVTSSRVILCK*EKVPLGMLSII
Trigger: TATGATTGACAACATTCCTAAGGGTACTTTCTCCCACTTGCACAAGATGACTCGGCTAGATGTAACATCAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 72 bp TCCACCAAGCTGGTCATATTGGCAAAATCTTTCCTTTaGATATTTGTAACAAAATTGTCTGCCAGCCGTAGC +
Preference number: 6 (lower is better)
Translates to: STKLVILAKSFL*IFVTKLSASRS
Trigger: GCTACGGCTGGCAGACAATTTTGTTACAAATATCAAAAGGAAAGATTTTGCCAATATGACCAGCTTGGTGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 72 bp ACGTTGCTAACCTTCGTGACCTTGTGTTGCCCATTATaGTTACAAACCTTATACCGGATCATTAGTATGATG +
Preference number: 6 (lower is better)
Translates to: TLLTFVTLCCPL*LQTLYRIISMM
Trigger: CATCATACTAATGATCCGGTATAAGGTTTGTAACAATAATGGGCAACACAAGGTCACGAAGGTTAGCAACGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 72 bp CTGAGAATAAACGTTGCTAACCTTCGTGACCTTGTGTaGCCCATTATTGTTACAAACCTTATACCGGATCAT +
Preference number: 6 (lower is better)
Translates to: LRINVANLRDLV*PIIVTNLIPDH
Trigger: ATGATCCGGTATAAGGTTTGTAACAATAATGGGCAACACAAGGTCACGAAGGTTAGCAACGTTTATTCTCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CAA 72 bp ACACACAAGTCATACATAGTTCCAGATGCCAGATTATaGACCAGAAATGTTTTGCTCGTAGGAGGTATCATT +
Preference number: 6 (lower is better)
Translates to: THKSYIVPDARL*TRNVLLVGGII
Trigger: AATGATACCTCCTACGAGCAAAACATTTCTGGTCAATAATCTGGCATCTGGAACTATGTATGACTTGTGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2
CDS CCA 72 bp TGCAGTGCTCTCAAATTTCGTAGATCAGCAAAAGCATaGGGTGTAATAAAACTTATTGTATTCCTGGATAGA +
Preference number: 6 (lower is better)
Translates to: CSALKFRRSAKA*GVIKLIVFLDR
Trigger: TCTATCCAGGAATACAATAAGTTTTATTACACCCCATGCTTTTGCTGATCTACGAAATTTGAGAGCACTGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000055815.14
ENSMUST00000119481.2