Pregenerated sensors for LRCOL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072754Ensembl transcript IDs: ENSMUST00000100924.5, ENSMUST00000185691.7, ENSMUST00000186408.7, ENSMUST00000190963.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCGGTGCGCTTTGTGCAGTGGGAAGAAGGGCTGTTCTCGCTCAGTaGGAGGCAGCACAGGTCCCAGCATTCAAGGTGGTGTTGGCATAT | + |
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Preference number: 1 (lower is better) Translates to: PGALCAVGRRAVLAQ*EAAQVPAFKVVLAY Trigger: ATATGCCAACACCACCTTGAATGCTGGGACCTGTGCTGCCTCCCACTGAGCGAGAACAGCCCTTCTTCCCACTGCACAAAGCGCACCGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR CCA 90 bp | TCGCTCAGTGGGAGGCAGCACAGGTCCCAGCATTCAAGGTGGTGTTaGCATATGGCTCCTTCGGGCTTGCGCCAAGATATACACTGCATG | + |
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Preference number: 1 (lower is better) Translates to: SLSGRQHRSQHSRWC*HMAPSGLRQDIHCM Trigger: CATGCAGTGTATATCTTGGCGCAAGCCCGAAGGAGCCATATGCCAACACCACCTTGAATGCTGGGACCTGTGCTGCCTCCCACTGAGCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR CCA 90 bp | CTGTTCTCGCTCAGTGGGAGGCAGCACAGGTCCCAGCATTCAAGGTaGTGTTGGCATATGGCTCCTTCGGGCTTGCGCCAAGATATACAC | + |
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Preference number: 1 (lower is better) Translates to: LFSLSGRQHRSQHSR*CWHMAPSGLRQDIH Trigger: GTGTATATCTTGGCGCAAGCCCGAAGGAGCCATATGCCAACACCACCTTGAATGCTGGGACCTGTGCTGCCTCCCACTGAGCGAGAACAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR CCA 90 bp | GGGCACACATTCCAAAAACACGGTCTGGGAGGTGCAGAATTTCTGTaGGTTCAAGCTGCTTTAAGGCAGCAGCAGACCCAGGTCCCAGGG | + |
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Preference number: 1 (lower is better) Translates to: GHTFQKHGLGGAEFL*VQAALRQQQTQVPG Trigger: CCCTGGGACCTGGGTCTGCTGCTGCCTTAAAGCAGCTTGAACCCACAGAAATTCTGCACCTCCCAGACCGTGTTTTTGGAATGTGTGCCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR CCA 90 bp | GTCCAGTTTGGGTTCTGTATCACACAAGATCTTGTTCATTCAGACTaGCAGGCAGAGAGCCAGGAGCCCGGTGCGCTTTGTGCAGTGGGA | + |
|
Preference number: 1 (lower is better) Translates to: VQFGFCITQDLVHSD*QAESQEPGALCAVG Trigger: TCCCACTGCACAAAGCGCACCGGGCTCCTGGCTCTCTGCCTGCCAGTCTGAATGAACAAGATCTTGTGTGATACAGAACCCAAACTGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000186408.7 ENSMUST00000190963.2 |
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| 3UTR GCA 90 bp | TGGTGTTGGCATATGGCTCCTTCGGGCTTGCGCCAAGATATACACTaGATGAAGATGGTCTTTGATGAGCAGAACCTGTCTGGGTTGCTG | + |
|
Preference number: 1 (lower is better) Translates to: WCWHMAPSGLRQDIH*MKMVFDEQNLSGLL Trigger: CAGCAACCCAGACAGGTTCTGCTCATCAAAGACCATCTTCATGCAGTGTATATCTTGGCGCAAGCCCGAAGGAGCCATATGCCAACACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR CAA 90 bp | CTCGCTCAGTGGGAGGCAGCACAGGTCCCAGCATTCAAGGTGGTGTaGGCATATGGCTCCTTCGGGCTTGCGCCAAGATATACACTGCAT | + |
|
Preference number: 2 (lower is better) Translates to: LAQWEAAQVPAFKVV*AYGSFGLAPRYTLH Trigger: ATGCAGTGTATATCTTGGCGCAAGCCCGAAGGAGCCATATGCCAACACCACCTTGAATGCTGGGACCTGTGCTGCCTCCCACTGAGCGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR-3UTR GCA 90 bp | TTCTGTGTTTTCTTCACAGAGGAACCCATTTGGCTTCCTCCAGGGCACACATTCGCCCGGTGCGCTTTGTaGAGTGGGAAGAAGGGCTGT | + |
|
Preference number: 2 (lower is better) Translates to: FCVFFTEEPIWLPPGHTFARCAL*SGKKGC Trigger: ACAGCCCTTCTTCCCACTGCACAAAGCGCACCGGGC...GAATGTGTGCCCTGGAGGAAGCCAAATGGGTTCCTCTGTGAAGAAAACACAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR CAA 90 bp | AACAGTTGCTGTGGCATTCTGTGTTTTCTTCACAGAGGAACCCATTaGGCTTCCTCCAGGGCACACATTCCAAAAACACGGTCTGGGAGG | + |
|
Preference number: 2 (lower is better) Translates to: NSCCGILCFLHRGTH*ASSRAHIPKTRSGR Trigger: CCTCCCAGACCGTGTTTTTGGAATGTGTGCCCTGGAGGAAGCCAAATGGGTTCCTCTGTGAAGAAAACACAGAATGCCACAGCAACTGTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR-3UTR CCA 90 bp | TGGGTTCTGTATCACACAAGATCTTGTTCATTCAGACTGGCAGGCAGAGAGCCAACAGAGGAACCCATTTaGCTTCCTCCAGGGCACACA | + |
|
Preference number: 2 (lower is better) Translates to: WVLYHTRSCSFRLAGREPTEEPI*LPPGHT Trigger: TGTGTGCCCTGGAGGAAGCCAAATGGGTTCCTCTGT...TGGCTCTCTGCCTGCCAGTCTGAATGAACAAGATCTTGTGTGATACAGAACCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR-3UTR CCA 90 bp | GCAACAGTTGCTGTGGCATTCTGTGTTTTCTTCACAGAGGAACCCATTTGGCTTCTTGTTCATTCAGACTaGCAGGCAGAGAGCCAGGAG | + |
|
Preference number: 2 (lower is better) Translates to: ATVAVAFCVFFTEEPIWLLVHSD*QAESQE Trigger: CTCCTGGCTCTCTGCCTGCCAGTCTGAATGAACAAG...AAGCCAAATGGGTTCCTCTGTGAAGAAAACACAGAATGCCACAGCAACTGTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR-3UTR TCA 90 bp | AGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTCTCTGGGAACAGTCTGGATGTaGGCAAAGCACTTTCTGGTC | + |
|
Preference number: 2 (lower is better) Translates to: RTQIREQSGCEQSTFWSLGTVWM*AKHFLV Trigger: GACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCC...CAGAGACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000186408.7 ENSMUST00000190963.2 |
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| 3UTR CAA 90 bp | ATACACTGCATGAAGATGGTCTTTGATGAGCAGAACCTGTCTGGGTaGCTGCTAGTCCTGATGCAACAGTTGCTGTGGCATTCTGTGTTT | + |
|
Preference number: 2 (lower is better) Translates to: IHCMKMVFDEQNLSG*LLVLMQQLLWHSVF Trigger: AAACACAGAATGCCACAGCAACTGTTGCATCAGGACTAGCAGCAACCCAGACAGGTTCTGCTCATCAAAGACCATCTTCATGCAGTGTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR-3UTR TCA 90 bp | AAGCACTTTCTGGTCTCTGAAGTCCAGTTTGGGTTCTGTATCACACAAGATCTTGCACTTTCTGGTCTCTaGAGTCCAGTTTGGGTTCTG | + |
|
Preference number: 2 (lower is better) Translates to: KHFLVSEVQFGFCITQDLALSGL*SPVWVL Trigger: CAGAACCCAAACTGGACTTCAGAGACCAGAAAGTGC...AAGATCTTGTGTGATACAGAACCCAAACTGGACTTCAGAGACCAGAAAGTGCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000186408.7 ENSMUST00000190963.2 |
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| 3UTR-3UTR CCA 90 bp | CTGATGCAACAGTTGCTGTGGCATTCTGTGTTTTCTTCACAGAGGAACCCATTTTCCAAAAACACGGTCTaGGAGGTGCAGAATTTCTGT | + |
|
Preference number: 2 (lower is better) Translates to: LMQQLLWHSVFSSQRNPFSKNTV*EVQNFC Trigger: ACAGAAATTCTGCACCTCCCAGACCGTGTTTTTGGA...AAATGGGTTCCTCTGTGAAGAAAACACAGAATGCCACAGCAACTGTTGCATCAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR GCA 72 bp | CTGGCAGGCAGAGAGCCAGGAGCCCGGTGCGCTTTGTaGAGTGGGAAGAAGGGCTGTTCTCGCTCAGTGGGA | + |
|
Preference number: 3 (lower is better) Translates to: LAGREPGARCAL*SGKKGCSRSVG Trigger: TCCCACTGAGCGAGAACAGCCCTTCTTCCCACTGCACAAAGCGCACCGGGCTCCTGGCTCTCTGCCTGCCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR CCA 72 bp | AGGCAGAGAGCCAGGAGCCCGGTGCGCTTTGTGCAGTaGGAAGAAGGGCTGTTCTCGCTCAGTGGGAGGCAG | + |
|
Preference number: 3 (lower is better) Translates to: RQRARSPVRFVQ*EEGLFSLSGRQ Trigger: CTGCCTCCCACTGAGCGAGAACAGCCCTTCTTCCCACTGCACAAAGCGCACCGGGCTCCTGGCTCTCTGCCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR CCA 72 bp | CTCAGTGGGAGGCAGCACAGGTCCCAGCATTCAAGGTaGTGTTGGCATATGGCTCCTTCGGGCTTGCGCCAA | + |
|
Preference number: 3 (lower is better) Translates to: LSGRQHRSQHSR*CWHMAPSGLRQ Trigger: TTGGCGCAAGCCCGAAGGAGCCATATGCCAACACCACCTTGAATGCTGGGACCTGTGCTGCCTCCCACTGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR TCA 72 bp | TGGCTCCTTCGGGCTTGCGCCAAGATATACACTGCATaGAGATGGTCTTTGATGAGCAGAACCTGTCTGGGT | + |
|
Preference number: 3 (lower is better) Translates to: WLLRACAKIYTA*RWSLMSRTCLG Trigger: ACCCAGACAGGTTCTGCTCATCAAAGACCATCTTCATGCAGTGTATATCTTGGCGCAAGCCCGAAGGAGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR CCA 72 bp | TTCCAAAAACACGGTCTGGGAGGTGCAGAATTTCTGTaGGTTCAAGCTGCTTTAAGGCAGCAGCAGACCCAG | + |
|
Preference number: 3 (lower is better) Translates to: FQKHGLGGAEFL*VQAALRQQQTQ Trigger: CTGGGTCTGCTGCTGCCTTAAAGCAGCTTGAACCCACAGAAATTCTGCACCTCCCAGACCGTGTTTTTGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR-3UTR CAA 90 bp | GCTTCCTCCAGGGCACACATTCCAAAAACACGGTCTGGGAGGTGCAGAATTTCTGTATCACACAAGATCTaGTTCATTCAGACTGGCAGG | + |
|
Preference number: 3 (lower is better) Translates to: ASSRAHIPKTRSGRCRISVSHKI*FIQTGR Trigger: CCTGCCAGTCTGAATGAACAAGATCTTGTGTGATAC...AGAAATTCTGCACCTCCCAGACCGTGTTTTTGGAATGTGTGCCCTGGAGGAAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR CCA 72 bp | GTGGCATTCTGTGTTTTCTTCACAGAGGAACCCATTTaGCTTCCTCCAGGGCACACATTCCAAAAACACGGT | + |
|
Preference number: 3 (lower is better) Translates to: VAFCVFFTEEPI*LPPGHTFQKHG Trigger: ACCGTGTTTTTGGAATGTGTGCCCTGGAGGAAGCCAAATGGGTTCCTCTGTGAAGAAAACACAGAATGCCAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR TCA 72 bp | GATTTTCAGAACCCAAATAAGGGAACAGTCTGGATGTaGGCAAAGCACTTTCTGGTCTCTGAAGTCCAGTTT | + |
|
Preference number: 3 (lower is better) Translates to: DFQNPNKGTVWM*AKHFLVSEVQF Trigger: AAACTGGACTTCAGAGACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAAAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000186408.7 ENSMUST00000190963.2 |
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| 3UTR CAA 72 bp | CAGACCCAGGTCCCAGGGGGCTTCTCCGGTCAGATATaGGCTCCACCCACTCCGGGACGTCCTTGCTTTGAC | + |
|
Preference number: 4 (lower is better) Translates to: QTQVPGGFSGQI*APPTPGRPCFD Trigger: GTCAAAGCAAGGACGTCCCGGAGTGGGTGGAGCCAATATCTGACCGGAGAAGCCCCCTGGGACCTGGGTCTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| CDS-3UTR CCA 90 bp | CAGAGAGCCAGGAGCCCGGTGCGCTTTGTGCAGTGGGAAGAAGGGCTGTTCTCGTCCAAAAACACGGTCTaGGAGGTGCAGAATTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: QRARSPVRFVQWEEGLFSSKNTV*EVQNFC Trigger: ACAGAAATTCTGCACCTCCCAGACCGTGTTTTTGGA...CGAGAACAGCCCTTCTTCCCACTGCACAAAGCGCACCGGGCTCCTGGCTCTCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000190963.2 |
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| CDS-3UTR CCA 90 bp | GGTGCGCTTTGTGCAGTGGGAAGAAGGGCTGTTCTCGCTCAGTGGGAGGCAGCACTTGTGTTCTTATCCTaGAATGTGGGTACAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: GALCAVGRRAVLAQWEAALVFLS*NVGTAQ Trigger: CTGGGCTGTACCCACATTCCAGGATAAGAACACAAG...TGCTGCCTCCCACTGAGCGAGAACAGCCCTTCTTCCCACTGCACAAAGCGCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| CDS-3UTR GCA 90 bp | TGTGAGCAAAGCACTTTCTGGTCTCTGAAGTCCAGTTTGGGTTCTGTATCACACGAGCCAGGAGCCCGGTaGGCTTTGTGCAGTGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: CEQSTFWSLKSSLGSVSHEPGAR*ALCSGK Trigger: CTTCCCACTGCACAAAGCGCACCGGGCTCCTGGCTC...GTGTGATACAGAACCCAAACTGGACTTCAGAGACCAGAAAGTGCTTTGCTCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 |
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| CDS-3UTR GCA 90 bp | GGATGTGAGCAAAGCACTTTCTGGTCTCTGAAGTCCAGTTTGGGTTCTGTATCAGCCCGGTGCGCTTTGTaGAGTGGGAAGAAGGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: GCEQSTFWSLKSSLGSVSARCAL*SGKKGC Trigger: ACAGCCCTTCTTCCCACTGCACAAAGCGCACCGGGC...TGATACAGAACCCAAACTGGACTTCAGAGACCAGAAAGTGCTTTGCTCACATCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 |
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| CDS-3UTR GCA 90 bp | TTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTCTGAGCCAGGAGCCCGGTaGGCTTTGTGCAGTGGGAAG | + |
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Preference number: 4 (lower is better) Translates to: FRTQIREQSGCEQSTFWSEPGAR*ALCSGK Trigger: CTTCCCACTGCACAAAGCGCACCGGGCTCCTGGCTC...AGACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 |
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| CDS-3UTR CCA 90 bp | GGATGTGAGCAAAGCACTTTCTGGTCTCTGAAGTCCAGTTTGGGTTCTGTATCAGGTGGTGTTGGCATATaGCTCCTTCGGGCTTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: GCEQSTFWSLKSSLGSVSGGVGI*LLRACA Trigger: GGCGCAAGCCCGAAGGAGCCATATGCCAACACCACC...TGATACAGAACCCAAACTGGACTTCAGAGACCAGAAAGTGCTTTGCTCACATCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS-3UTR CCA 90 bp | AGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTCTCTGGGTGGTGTTGGCATATaGCTCCTTCGGGCTTGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: RTQIREQSGCEQSTFWSLGGVGI*LLRACA Trigger: GGCGCAAGCCCGAAGGAGCCATATGCCAACACCACC...CAGAGACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS-3UTR GCA 90 bp | CTACAGATTTTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTGCCCGGTGCGCTTTGTaGAGTGGGAAGAAGGGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: LQIFRTQIREQSGCEQSTARCAL*SGKKGC Trigger: ACAGCCCTTCTTCCCACTGCACAAAGCGCACCGGGC...AGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAAAATCTGTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 |
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| CDS-3UTR CCA 90 bp | CAGATTTTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCGGTGGTGTTGGCATATaGCTCCTTCGGGCTTGCGCC | + |
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Preference number: 4 (lower is better) Translates to: QIFRTQIREQSGCEQSTFGGVGI*LLRACA Trigger: GGCGCAAGCCCGAAGGAGCCATATGCCAACACCACC...GAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAAAATCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS-3UTR CCA 90 bp | TTCTGTGTTTTCTTCACAGAGGAACCCATTTGGCTTCCTCCAGGGCACACATTCTCTTATCCTGGAATGTaGGTACAGCCCAGAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: FCVFFTEEPIWLPPGHTFSYPGM*VQPRAA Trigger: TGCTGCTCTGGGCTGTACCCACATTCCAGGATAAGA...GAATGTGTGCCCTGGAGGAAGCCAAATGGGTTCCTCTGTGAAGAAAACACAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR CAA 72 bp | TGTGGCATTCTGTGTTTTCTTCACAGAGGAACCCATTaGGCTTCCTCCAGGGCACACATTCCAAAAACACGG | + |
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Preference number: 4 (lower is better) Translates to: CGILCFLHRGTH*ASSRAHIPKTR Trigger: CCGTGTTTTTGGAATGTGTGCCCTGGAGGAAGCCAAATGGGTTCCTCTGTGAAGAAAACACAGAATGCCACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| 3UTR CAA 72 bp | AACCTGTCTGGGTTGCTGCTAGTCCTGATGCAACAGTaGCTGTGGCATTCTGTGTTTTCTTCACAGAGGAAC | + |
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Preference number: 4 (lower is better) Translates to: NLSGLLLVLMQQ*LWHSVFSSQRN Trigger: GTTCCTCTGTGAAGAAAACACAGAATGCCACAGCAACTGTTGCATCAGGACTAGCAGCAACCCAGACAGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| CDS-3UTR GCA 90 bp | AGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTCTCTGACACGGTCTGGGAGGTaGAGAATTTCTGTGGGTTCA | + |
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Preference number: 4 (lower is better) Translates to: RTQIREQSGCEQSTFWSLTRSGR*RISVGS Trigger: TGAACCCACAGAAATTCTGCACCTCCCAGACCGTGT...CAGAGACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS-3UTR CCA 90 bp | TTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTCTACAGAGGAACCCATTTaGCTTCCTCCAGGGCACACA | + |
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Preference number: 4 (lower is better) Translates to: FRTQIREQSGCEQSTFWSTEEPI*LPPGHT Trigger: TGTGTGCCCTGGAGGAAGCCAAATGGGTTCCTCTGT...AGACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 |
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| CDS-3UTR TCA 90 bp | TGTGAGCAAAGCACTTTCTGGTCTCTGAAGTCCAGTTTGGGTTCTGTATCACACGATCCCCTTGTAGGCTaGAACCCTTGTGTTCTTATC | + |
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Preference number: 4 (lower is better) Translates to: CEQSTFWSLKSSLGSVSHDPLVG*NPCVLI Trigger: GATAAGAACACAAGGGTTTCAGCCTACAAGGGGATC...GTGTGATACAGAACCCAAACTGGACTTCAGAGACCAGAAAGTGCTTTGCTCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185691.7 |
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| CDS-3UTR GCA 90 bp | TTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTCTACACGGTCTGGGAGGTaGAGAATTTCTGTGGGTTCA | + |
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Preference number: 4 (lower is better) Translates to: FRTQIREQSGCEQSTFWSTRSGR*RISVGS Trigger: TGAACCCACAGAAATTCTGCACCTCCCAGACCGTGT...AGACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS-3UTR CCA 90 bp | ATTTTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGACAGAGGAACCCATTTaGCTTCCTCCAGGGCACACA | + |
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Preference number: 4 (lower is better) Translates to: IFRTQIREQSGCEQSTFWTEEPI*LPPGHT Trigger: TGTGTGCCCTGGAGGAAGCCAAATGGGTTCCTCTGT...CCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAAAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 |
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| CDS-3UTR TCA 90 bp | GTGTTTTCTTCACAGAGGAACCCATTTGGCTTCCTCCAGGGCACACATTCCAAATCTAACCTTGTAGGCTaGAACCCTTGTGTTCTTATC | + |
|
Preference number: 4 (lower is better) Translates to: VFSSQRNPFGFLQGTHSKSNLVG*NPCVLI Trigger: GATAAGAACACAAGGGTTTCAGCCTACAAGGTTAGA...TTTGGAATGTGTGCCCTGGAGGAAGCCAAATGGGTTCCTCTGTGAAGAAAACAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186408.7 |
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| CDS-3UTR GCA 90 bp | CTACAGATTTTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTACACGGTCTGGGAGGTaGAGAATTTCTGTGGGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: LQIFRTQIREQSGCEQSTTRSGR*RISVGS Trigger: TGAACCCACAGAAATTCTGCACCTCCCAGACCGTGT...AGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAAAATCTGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS-3UTR CCA 90 bp | ATTTTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTCTTATCCTGGAATGTaGGTACAGCCCAGAGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: IFRTQIREQSGCEQSTFWSYPGM*VQPRAA Trigger: TGCTGCTCTGGGCTGTACCCACATTCCAGGATAAGA...CCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000185691.7 ENSMUST00000186408.7 |
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| CDS-3UTR CCA 90 bp | TTCTGTATCACACAAGATCTTGTTCATTCAGACTGGCAGGCAGAGAGCCAGGAGATGCAACAGTTGCTGTaGCATTCTGTGTTTTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: FCITQDLVHSDWQAESQEMQQLL*HSVFSS Trigger: GGAAGAAAACACAGAATGCCACAGCAACTGTTGCAT...CTCCTGGCTCTCTGCCTGCCAGTCTGAATGAACAAGATCTTGTGTGATACAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190963.2 |
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| CDS-3UTR CCA 90 bp | CAAAGCACTTTCTGGTCTCTGAAGTCCAGTTTGGGTTCTGTATCACACAAGATCTCCAAAAACACGGTCTaGGAGGTGCAGAATTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: QSTFWSLKSSLGSVSHKISKNTV*EVQNFC Trigger: ACAGAAATTCTGCACCTCCCAGACCGTGTTTTTGGA...GATCTTGTGTGATACAGAACCCAAACTGGACTTCAGAGACCAGAAAGTGCTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS-3UTR CCA 90 bp | TTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTCTTCCAAAAACACGGTCTaGGAGGTGCAGAATTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: FRTQIREQSGCEQSTFWSSKNTV*EVQNFC Trigger: ACAGAAATTCTGCACCTCCCAGACCGTGTTTTTGGA...AGACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS-3UTR CCA 90 bp | CTACAGATTTTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTCTTGTGTTCTTATCCTaGAATGTGGGTACAGCCCAG | + |
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Preference number: 4 (lower is better) Translates to: LQIFRTQIREQSGCEQSTLVFLS*NVGTAQ Trigger: CTGGGCTGTACCCACATTCCAGGATAAGAACACAAG...AGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAAAATCTGTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000185691.7 ENSMUST00000186408.7 |
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| CDS-3UTR GCA 90 bp | AGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTCTCTGCGCCAAGATATACACTaGATGAAGATGGTCTTTGAT | + |
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Preference number: 4 (lower is better) Translates to: RTQIREQSGCEQSTFWSLRQDIH*MKMVFD Trigger: ATCAAAGACCATCTTCATGCAGTGTATATCTTGGCG...CAGAGACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS-3UTR GCA 90 bp | TGTGAGCAAAGCACTTTCTGGTCTCTGAAGTCCAGTTTGGGTTCTGTATCACACCGCCAAGATATACACTaGATGAAGATGGTCTTTGAT | + |
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Preference number: 4 (lower is better) Translates to: CEQSTFWSLKSSLGSVSHRQDIH*MKMVFD Trigger: ATCAAAGACCATCTTCATGCAGTGTATATCTTGGCG...GTGTGATACAGAACCCAAACTGGACTTCAGAGACCAGAAAGTGCTTTGCTCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS-3UTR CCA 90 bp | GGATGTGAGCAAAGCACTTTCTGGTCTCTGAAGTCCAGTTTGGGTTCTGTATCAATGCAACAGTTGCTGTaGCATTCTGTGTTTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GCEQSTFWSLKSSLGSVSMQQLL*HSVFSS Trigger: TGAAGAAAACACAGAATGCCACAGCAACTGTTGCAT...TGATACAGAACCCAAACTGGACTTCAGAGACCAGAAAGTGCTTTGCTCACATCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 |
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| CDS-3UTR CCA 90 bp | AGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTCTCTGATGCAACAGTTGCTGTaGCATTCTGTGTTTTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: RTQIREQSGCEQSTFWSLMQQLL*HSVFSS Trigger: TGAAGAAAACACAGAATGCCACAGCAACTGTTGCAT...CAGAGACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 |
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| 3UTR CAA 72 bp | TGTGAGCAAAGCACTTTCTGGTCTCTGAAGTCCAGTTaGGGTTCTGTATCACACAAGATCTTGTTCATTCAG | + |
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Preference number: 4 (lower is better) Translates to: CEQSTFWSLKSS*GSVSHKILFIQ Trigger: CTGAATGAACAAGATCTTGTGTGATACAGAACCCAAACTGGACTTCAGAGACCAGAAAGTGCTTTGCTCACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000186408.7 ENSMUST00000190963.2 |
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| CDS-3UTR TCA 90 bp | TTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTCTAAGATATACACTGCATaGAGATGGTCTTTGATGAGC | + |
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Preference number: 4 (lower is better) Translates to: FRTQIREQSGCEQSTFWSKIYTA*RWSLMS Trigger: GCTCATCAAAGACCATCTTCATGCAGTGTATATCTT...AGACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS-3UTR TCA 90 bp | CAAAGCACTTTCTGGTCTCTGAAGTCCAGTTTGGGTTCTGTATCACACAAGATCAAGATATACACTGCATaGAGATGGTCTTTGATGAGC | + |
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Preference number: 4 (lower is better) Translates to: QSTFWSLKSSLGSVSHKIKIYTA*RWSLMS Trigger: GCTCATCAAAGACCATCTTCATGCAGTGTATATCTT...GATCTTGTGTGATACAGAACCCAAACTGGACTTCAGAGACCAGAAAGTGCTTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS-3UTR TCA 90 bp | AAGCACTTTCTGGTCTCTGAAGTCCAGTTTGGGTTCTGTATCACACAAGATCTTAAGATATACACTGCATaGAGATGGTCTTTGATGAGC | + |
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Preference number: 4 (lower is better) Translates to: KHFLVSEVQFGFCITQDLKIYTA*RWSLMS Trigger: GCTCATCAAAGACCATCTTCATGCAGTGTATATCTT...AAGATCTTGTGTGATACAGAACCCAAACTGGACTTCAGAGACCAGAAAGTGCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS CCA 90 bp | GGGCACACATTCCAAAAACACGGTCTGGGAGGTGCAGAATTTCTGTaGGTTCAAGCTGTTGGTGACACAGCAGTCGCTCTGACACTCAGA | + |
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Preference number: 5 (lower is better) Translates to: GHTFQKHGLGGAEFL*VQAVGDTAVALTLR Trigger: TCTGAGTGTCAGAGCGACTGCTGTGTCACCAACAGCTTGAACCCACAGAAATTCTGCACCTCCCAGACCGTGTTTTTGGAATGTGTGCCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS CCA 90 bp | AACCCATTTGGCTTCCTCCAGGGCACACATTCCAAAAACACGGTCTaGGAGGTGCAGAATTTCTGTGGGTTCAAGCTGTTGGTGACACAG | + |
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Preference number: 5 (lower is better) Translates to: NPFGFLQGTHSKNTV*EVQNFCGFKLLVTQ Trigger: CTGTGTCACCAACAGCTTGAACCCACAGAAATTCTGCACCTCCCAGACCGTGTTTTTGGAATGTGTGCCCTGGAGGAAGCCAAATGGGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 |
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| CDS CCA 90 bp | TTCTGTGTTTTCTTCCTCCAGGGCACACATTCCAAAAACACGGTCTaGGAGGTGCAGAATTTCTGTGGGTTCAAGCTGTTGGTGACACAG | + |
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Preference number: 5 (lower is better) Translates to: FCVFFLQGTHSKNTV*EVQNFCGFKLLVTQ Trigger: CTGTGTCACCAACAGCTTGAACCCACAGAAATTCTGCACCTCCCAGACCGTGTTTTTGGAATGTGTGCCCTGGAGGAAGAAAACACAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000190963.2 |
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| CDS CCA 90 bp | CAGAACCTGTCTGGGTTGCTGCTAGTCCTGATGCAACAGTTGCTGTaGCATTCTGTGTTTTCTTCCTCCAGGGCACACATTCCAAAAACA | + |
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Preference number: 5 (lower is better) Translates to: QNLSGLLLVLMQQLL*HSVFSSSRAHIPKT Trigger: TGTTTTTGGAATGTGTGCCCTGGAGGAAGAAAACACAGAATGCCACAGCAACTGTTGCATCAGGACTAGCAGCAACCCAGACAGGTTCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000190963.2 |
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| CDS-3UTR CAA 90 bp | TTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTCTTGTAGGCTGAAACCCTaGTGTTCTTATCCTGGAATG | + |
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Preference number: 5 (lower is better) Translates to: FRTQIREQSGCEQSTFWSCRLKP*CSYPGM Trigger: CATTCCAGGATAAGAACACAAGGGTTTCAGCCTACA...AGACCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185691.7 ENSMUST00000186408.7 |
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| CDS-3UTR CAA 90 bp | ATTTTCAGAACCCAAATAAGGGAACAGTCTGGATGTGAGCAAAGCACTTTCTGGTGTAGGCTGAAACCCTaGTGTTCTTATCCTGGAATG | + |
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Preference number: 5 (lower is better) Translates to: IFRTQIREQSGCEQSTFWCRLKP*CSYPGM Trigger: CATTCCAGGATAAGAACACAAGGGTTTCAGCCTACA...CCAGAAAGTGCTTTGCTCACATCCAGACTGTTCCCTTATTTGGGTTCTGAAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000185691.7 ENSMUST00000186408.7 |
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| CDS CCA 72 bp | TGTAGGCTGAAACCCTTGTGTTCTTATCCTGGAATGTaGGTACAGCCCAGAGCAGCAGCAGCAGCAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: CRLKPLCSYPGM*VQPRAAAAAAA Trigger: TGCTGCTGCTGCTGCTGCTGCTCTGGGCTGTACCCACATTCCAGGATAAGAACACAAGGGTTTCAGCCTACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000185691.7 ENSMUST00000186408.7 |
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| CDS CAA 90 bp | GATGAGCAGAACCTGTCTGGGTTGCTGCTAGTCCTGATGCAACAGTaGCTGTGGCATTCTGTGTTTTCTTCCTCCAGGGCACACATTCCA | + |
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Preference number: 6 (lower is better) Translates to: DEQNLSGLLLVLMQQ*LWHSVFSSSRAHIP Trigger: TGGAATGTGTGCCCTGGAGGAAGAAAACACAGAATGCCACAGCAACTGTTGCATCAGGACTAGCAGCAACCCAGACAGGTTCTGCTCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190963.2 |
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| CDS CCA 72 bp | TTCCAAAAACACGGTCTGGGAGGTGCAGAATTTCTGTaGGTTCAAGCTGTTGGTGACACAGCAGTCGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: FQKHGLGGAEFL*VQAVGDTAVAL Trigger: CAGAGCGACTGCTGTGTCACCAACAGCTTGAACCCACAGAAATTCTGCACCTCCCAGACCGTGTTTTTGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000100924.5 ENSMUST00000185691.7 ENSMUST00000190963.2 |
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| CDS CAA 72 bp | AACCTGTCTGGGTTGCTGCTAGTCCTGATGCAACAGTaGCTGTGGCATTCTGTGTTTTCTTCCTCCAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: NLSGLLLVLMQQ*LWHSVFSSSRA Trigger: TGCCCTGGAGGAAGAAAACACAGAATGCCACAGCAACTGTTGCATCAGGACTAGCAGCAACCCAGACAGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000190963.2 |
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| CDS TCA 72 bp | ATTGTTTCGACACATCTCTCCGATCCCCTTGTAGGCTaGAACCCTTGTGTTCTTATCCTGGAATGTGGGTAC | + |
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Preference number: 6 (lower is better) Translates to: IVSTHLSDPLVG*NPCVLILECGY Trigger: GTACCCACATTCCAGGATAAGAACACAAGGGTTTCAGCCTACAAGGGGATCGGAGAGATGTGTCGAAACAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185691.7 |
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