Pregenerated sensors for LRCH2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031290Ensembl transcript IDs: ENSMUST00000112819.9, ENSMUST00000136789.8, ENSMUST00000137665.2, ENSMUST00000152838.8
Found 96 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATAATAGTTGAACTGCTGTGTCAAGGACCTCAAGGGGACCCATCGTaGAAACAATTTGTATTTGCTATAAAGAAGGAACACCAAAGTTCT | + |
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Preference number: 1 (lower is better) Translates to: IIVELLCQGPQGDPS*KQFVFAIKKEHQSS Trigger: AGAACTTTGGTGTTCCTTCTTTATAGCAAATACAAATTGTTTTCACGATGGGTCCCCTTGAGGTCCTTGACACAGCAGTTCAACTATTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTTAGTGGCCGCTTTCTaGATGTGGAAGGCAGCACTG | + |
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Preference number: 2 (lower is better) Translates to: TKRNMLGFWYMFVIVDCALVAAF*MWKAAL Trigger: CAGTGCTGCCTTCCACATTCAGAAAGCGGCCACTAA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTGGCACAATAATAGTTaGACTGCTGTGTCAAGGACC | + |
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Preference number: 2 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAWHNNS*TAVSRT Trigger: GGTCCTTGACACAGCAGTTCAACTATTATTGTGCCA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCCCAAACGTAGCAGTTaGATCCAAATGTCCTTGACA | + |
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Preference number: 2 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAPKRSS*IQMSLT Trigger: TGTCAAGGACATTTGGATGCAACTGCTACGTTTGGG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTGTGGAAGGCAGCACTaGTGTACTGAAAGTTCAAAT | + |
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Preference number: 2 (lower is better) Translates to: TKRNMLGFWYMFVIVDCACGRQH*CTESSN Trigger: ATTTGAACTTTCAGTACATCAGTGCTGCCTTCCACA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTAAGAAACCACCAATGTaGGGGACATTTAAAACCTCA | + |
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Preference number: 2 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAKKPPM*GTFKTS Trigger: TGAGGTTTTAAATGTCCCTCACATTGGTGGTTTCTT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTACCAGGAGAGAAGTGTaGATGATTGTTTTGGTTGTT | + |
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Preference number: 2 (lower is better) Translates to: TKRNMLGFWYMFVIVDCATRREV*MIVLVV Trigger: AACAACCAAAACAATCATTCACACTTCTCTCCTGGT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTACTCTTCAGATAAAGTaGTTTAAACGACGATTACGG | + |
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Preference number: 2 (lower is better) Translates to: TKRNMLGFWYMFVIVDCATLQIK*FKRRLR Trigger: CCGTAATCGTCGTTTAAATCACTTTATCTGAAGAGT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTTCATAAATGCCCTTTaGAATATCCTAGACCAACGT | + |
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Preference number: 2 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAFINAL*NILDQR Trigger: ACGTTGGTCTAGGATATTTCAAAGGGCATTTATGAA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR CCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCCTCCAAAAATTGCTTaGACCACTCAGAGTTTATAT | + |
|
Preference number: 2 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAPPKIA*TTQSLY Trigger: ATATAAACTCTGAGTGGTCCAAGCAATTTTTGGAGG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR CCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGGAACACCAAAGTTCTaGTATGTTTTCTCTTTAAGG | + |
|
Preference number: 2 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAGTPKF*YVFSLR Trigger: CCTTAAAGAGAAAACATACCAGAACTTTGGTGTTCC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTATCATATTTTATACATaGTCCAGAAAGGGCCAGATT | + |
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Preference number: 2 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAIIFYT*SRKGQI Trigger: AATCTGGCCCTTTCTGGAGCATGTATAAAATATGAT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR TCA 72 bp | GAACTGCTGTGTCAAGGACCTCAAGGGGACCCATCGTaGAAACAATTTGTATTTGCTATAAAGAAGGAACAC | + |
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Preference number: 3 (lower is better) Translates to: ELLCQGPQGDPS*KQFVFAIKKEH Trigger: GTGTTCCTTCTTTATAGCAAATACAAATTGTTTTCACGATGGGTCCCCTTGAGGTCCTTGACACAGCAGTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR GCA 72 bp | GGTATATGTTTGTCATTGTGGACTGTGCTGAAAAACTaGCTTAGAAGTGATGTTGTTACTGCCTTTTGGCAC | + |
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Preference number: 3 (lower is better) Translates to: GICLSLWTVLKN*LRSDVVTAFWH Trigger: GTGCCAAAAGGCAGTAACAACATCACTTCTAAGGCAGTTTTTCAGCACAGTCCACAATGACAAACATATACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGCCTTAGAAGTGATGTaGTTACTGCCTTTTGGCACA | + |
|
Preference number: 3 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAALEVM*LLPFGT Trigger: TGTGCCAAAAGGCAGTAACAACATCACTTCTAAGGC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTCCTCCAAAAATTGCTaGGACCACTCAGAGTTTATA | + |
|
Preference number: 3 (lower is better) Translates to: TKRNMLGFWYMFVIVDCASSKNC*DHSEFI Trigger: TATAAACTCTGAGTGGTCCAAGCAATTTTTGGAGGA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTATTTTCCTCCAAAAATaGCTTGGACCACTCAGAGTT | + |
|
Preference number: 3 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAIFLQK*LGPLRV Trigger: AACTCTGAGTGGTCCAAGCAATTTTTGGAGGAAAAT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTGCATCCAAATGTCCTaGACAATTAGTACTTCCCTA | + |
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Preference number: 3 (lower is better) Translates to: TKRNMLGFWYMFVIVDCACIQMS*TISTSL Trigger: TAGGGAAGTACTAATTGTCAAGGACATTTGGATGCA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCTTCATAAATGCCCTTaGAAATATCCTAGACCAACG | + |
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Preference number: 3 (lower is better) Translates to: TKRNMLGFWYMFVIVDCALHKCP*KYPRPT Trigger: CGTTGGTCTAGGATATTTCAAAGGGCATTTATGAAG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTAGCCTTATTACTGCTTaGTGTAATGTTCTCAACACA | + |
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Preference number: 3 (lower is better) Translates to: TKRNMLGFWYMFVIVDCASLITA*CNVLNT Trigger: TGTGTTGAGAACATTACACAAAGCAGTAATAAGGCT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| 3UTR-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTAGATTCATAATGCCATaGGGGATATTTTCAGATCCA | + |
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Preference number: 3 (lower is better) Translates to: TKRNMLGFWYMFVIVDCARFIMP*GIFSDP Trigger: TGGATCTGAAAATATCCCCAATGGCATTATGAATCT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCTCCCCGGGTGCCACTaGGGCCCATTGGGGAACGGC | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCALPGCH*GPLGNG Trigger: GCCGTTCCCCAATGGGCCGCAGTGGCACCCGGGGAG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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| CDS-3UTR CCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGAGTCGGTACCGGGATaGGCACCGCCACGGTCCCGC | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAESVPG*APPRSR Trigger: GCGGGACCGTGGCGGTGCCCATCCCGGTACCGACTC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTGCAAGCTCCCCGGGTaGCACTGCGGCCCATTGGGG | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCACKLPG*HCGPLG Trigger: CCCCAATGGGCCGCAGTGGCACCCGGGGAGCTTGCA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTTCCCACCGCCTCCCTaGCTCGCCGCCATGTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAFPPPP*LAAMFL Trigger: CAGGAACATGGCGGCGAGTCAGGGAGGCGGTGGGAA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000136789.8 |
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| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCACTTCCACCTCCACTaGAGCCGCCGCCCCCACTGT | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAHFHLH*SRRPHC Trigger: ACAGTGGGGGCGGCGGCTGCAGTGGAGGTGGAAGTG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTAGGCTCCTCACCGTGTaGTGCGGCTGCAAGCTCCCC | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCARLLTV*CGCKLP Trigger: GGGGAGCTTGCAGCCGCAGCACACGGTGAGGAGCCT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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| CDS-3UTR CCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGCCACTGCGGCCCATTaGGGAACGGCTGACCGAAAA | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAATAAH*GTADRK Trigger: TTTTCGGTCAGCCGTTCCCCAATGGGCCGCAGTGGC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCCATTGGGGAACGGCTaGCCGAAAAGAGTCGGTACC | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAPLGNG*PKRVGT Trigger: GGTACCGACTCTTTTCGGTCAGCCGTTCCCCAATGG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGCCAAAGGGACCATGTaGAAAGCCATCAGAGCGGTC | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAAKGTM*KAIRAV Trigger: GACCGCTCTGATGGCTTTTCACATGGTCCCTTTGGC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCTTGGGCACTGCTGGTaGCGGTACATGAATGCTAGC | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCALGHCW*RYMNAS Trigger: GCTAGCATTCATGTACCGTCACCAGCAGTGCCCAAG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| CDS-3UTR CCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCTGGAAAGATCTGCTTaGGTGGTGTCCGTCAGGTCG | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCALERSA*VVSVRS Trigger: CGACCTGACGGACACCACCCAAGCAGATCTTTCCAG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGCTGGTGACGGTACATaGATGCTAGCTACAGAGCGT | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAAGDGT*MLATER Trigger: ACGCTCTGTAGCTAGCATTCATGTACCGTCACCAGC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGGAGGGCCTGAACTGTaGCACCAACTTTCACAAGAC | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAGGPEL*HQLSQD Trigger: GTCTTGTGAAAGTTGGTGTCACAGTTCAGGCCCTCC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGAGCGTGGCCTTATGTaGTTGGCCAAATGGCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAERGLM*LAKWQR Trigger: TCTTTGCCATTTGGCCAATCACATAAGGCCACGCTC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTAACTCCATCCATCAGTaGGGCTCCTATGTCATCAGG | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCANSIHQ*GSYVIR Trigger: CCTGATGACATAGGAGCCGCACTGATGGATGGAGTT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTTCGACATTTTGCCATaGTCAGCTTGGGCACTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAFDILP*SAWALL Trigger: CAGCAGTGCCCAAGCTGAGCATGGCAAAATGTCGAA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| CDS-3UTR CCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTAAAGATCTGCTTGGGTaGTGTCCGTCAGGTCGTAAC | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAKDLLG*CPSGRN Trigger: GTTACGACCTGACGGACACCACCCAAGCAGATCTTT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGACTGTGCGGACATATaGGCATTATCACTCTCTTGC | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCADCADI*ALSLSC Trigger: GCAAGAGAGTGATAATGCTCATATGTCCGCACAGTC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTCTTCCAAAATATGGTaGGGCAAGCACAGTCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCASSKIW*GKHSLS Trigger: GGAGAGACTGTGCTTGCCTCACCATATTTTGGAAGA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTAATTCAAGGAGGGCCTaGACTGTGACACCAACTTTC | + |
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Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCANSRRA*TVTPTF Trigger: GAAAGTTGGTGTCACAGTTCAGGCCCTCCTTGAATT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTATTTCTGGAAAGATCTaGTTGGGTGGTGTCCGTCAG | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAISGKI*LGGVRQ Trigger: CTGACGGACACCACCCAAGCAGATCTTTCCAGAAAT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
||
| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTAAATCCTGGATCTGCTaGCCCGTATTCTTGACGAGA | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAKSWIC*PVFLTR Trigger: TCTCGTCAAGAATACGGGGCAGCAGATCCAGGATTT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTGTAAATCCTGGATCTaGTGCCCCGTATTCTTGACG | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCACKSWI*CPVFLT Trigger: CGTCAAGAATACGGGGCAGCAGATCCAGGATTTACA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCATTCTTTTATTCAGTaGTGGGAGATCCAGGGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAHSFIQ*WEIQGV Trigger: GACTCCCTGGATCTCCCATCACTGAATAAAAGAATG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGATTCTGGCCACTGTTaGTCAACTATTTGGTCCTTC | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCADSGHC*STIWSF Trigger: GAAGGACCAAATAGTTGATCAACAGTGGCCAGAATC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCAAGCCATAGAAAGCTaGGATGCCTTTGTAGTAGGT | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAQAIES*DAFVVG Trigger: ACCTACTACAAAGGCATCTCAGCTTTCTATGGCTTG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTATTTCTTCGACATTTTaGCATGCTCAGCTTGGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAISSTF*HAQLGH Trigger: GTGCCCAAGCTGAGCATGGCAAAATGTCGAAGAAAT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR CCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGCATATCTGTGCCGGTaGTACTTGCAATGGATTGTT | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAAYLCR*YLQWIV Trigger: AACAATCCATTGCAAGTACCACCGGCACAGATATGC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
||
| CDS-3UTR CCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTCTCATTGTAAATCCTaGATCTGCTGCCCCGTATTC | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCASHCKS*ICCPVF Trigger: GAATACGGGGCAGCAGATCCAGGATTTACAATGAGA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTCTTGCTTCAGTAACTaGGCAGCTATCTTCCTCAAA | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCASCFSN*AAIFLK Trigger: TTTGAGGAAGATAGCTGCTCAGTTACTGAAGCAAGA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTGTGCCGGTGGTACTTaGAATGGATTGTTATCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCACAGGT*NGLLSK Trigger: TTTGGATAACAATCCATTGCAAGTACCACCGGCACA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
||
| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGCATTATCACTCTCTTaGTCCTCATTCTCATTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAALSLS*SSFSLP Trigger: TGGCAATGAGAATGAGGAGCAAGAGAGTGATAATGC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
||
| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCGCTCTTCCCGTAAATaGTCCATCTTTCTTCTCATT | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCARSSRK*SIFLLI Trigger: AATGAGAAGAAAGATGGAGCATTTACGGGAAGAGCG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR CCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTATTCCCTTCATCTGCTaGGACACTCTTTTCACATTC | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAIPFIC*DTLFTF Trigger: GAATGTGAAAAGAGTGTCCCAGCAGATGAAGGGAAT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR CCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTGTGGCCTTATGTGATTaGCCAAATGGCAAAGAACAA | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAVALCD*PNGKEQ Trigger: TTGTTCTTTGCCATTTGGCCAATCACATAAGGCCAC...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| 3UTR CAA 72 bp | ATGAGCCAGACTGTGTTAAATTCAACATCAAGTTACTaGAGGATCATATTTTATACATGCTCCAGAAAGGGC | + |
|
Preference number: 4 (lower is better) Translates to: MSQTVLNSTSSY*RIIFYTCSRKG Trigger: GCCCTTTCTGGAGCATGTATAAAATATGATCCTCAAGTAACTTGATGTTGAATTTAACACAGTCTGGCTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTACTATTTGGTCCTTCTaGTTTTCTAATGGCTGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCATIWSF*FSNGCH Trigger: ATGGCAGCCATTAGAAAATCAGAAGGACCAAATAGT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTCTGAGAATCAGGCTTaGTTCCTGTTATATGACTGT | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCASENQA*FLLYDC Trigger: ACAGTCATATAACAGGAAGCAAGCCTGATTCTCAGA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTATTCTTTTCTGATCTaGTTGCTTCGTCTCCTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAYSFLI*LLRLLS Trigger: AGAGAGGAGACGAAGCAAGCAGATCAGAAAAGAATA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTATGACAGAAGTTGAGTaGTTAAGAATCCTGTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAMTEVE*LRILFF Trigger: GAAGAACAGGATTCTTAATCACTCAACTTCTGTCAT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR TCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTCTCATGACAGAAGTTaGGTGATTAAGAATCCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCASHDRS*VIKNPV Trigger: AACAGGATTCTTAATCACTCAACTTCTGTCATGAGA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR GCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTGGATTCAAGATTATTaGGAAGCTGCCTTATCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAWIQDY*EAALSV Trigger: AACAGATAAGGCAGCTTCGCAATAATCTTGAATCCA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR CCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCAATTTCTTCGGGAATaGATACGAGTTTATTATTGC | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAQFLRE*IRVYYC Trigger: GCAATAATAAACTCGTATCCATTCCCGAAGAAATTG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
||
| CDS-3UTR CCA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCGGTGGTACTTGCAATaGATTGTTATCCAAAATTAT | + |
|
Preference number: 4 (lower is better) Translates to: TKRNMLGFWYMFVIVDCARWYLQ*IVIQNY Trigger: ATAATTTTGGATAACAATCCATTGCAAGTACCACCG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
||
| CDS TCA 90 bp | ACTGTGACACCAACTTTCACAAGACCTCGCTCTTCCAAAATATGGTaGGGCAAGCACAGTCTCTCCTGTGAAACACCCAACTTTTTGCAA | + |
|
Preference number: 5 (lower is better) Translates to: TVTPTFTRPRSSKIW*GKHSLSCETPNFLQ Trigger: TTGCAAAAAGTTGGGTGTTTCACAGGAGAGACTGTGCTTGCCTCACCATATTTTGGAAGAGCGAGGTCTTGTGAAAGTTGGTGTCACAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000137665.2 ENSMUST00000152838.8 |
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| CDS-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTTTGCCATGCTCAGCTaGGGCACTGCTGGTGACGGT | + |
|
Preference number: 5 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAFAMLS*GTAGDG Trigger: ACCGTCACCAGCAGTGCCCAAGCTGAGCATGGCAAA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| CDS TCA 90 bp | TTCCATGCTGTCTGTAAGAGGCTGAGAAGGCATTCTTTTATTCAGTaGTGGGAGATCCAGGGAGTCTGGTTTCTTATCCATTCTACAACA | + |
|
Preference number: 5 (lower is better) Translates to: FHAVCKRLRRHSFIQ*WEIQGVWFLIHSTT Trigger: TGTTGTAGAATGGATAAGAAACCAGACTCCCTGGATCTCCCATCACTGAATAAAAGAATGCCTTCTCAGCCTCTTACAGACAGCATGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000137665.2 ENSMUST00000152838.8 |
||
| CDS-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTCTGGAAAGATCTGCTaGGGTGGTGTCCGTCAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: TKRNMLGFWYMFVIVDCASGKIC*GGVRQV Trigger: GACCTGACGGACACCACCCAAGCAGATCTTTCCAGA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
||
| CDS TCA 90 bp | AGCAAACAGGAATCTCAGTCACTTTATTACAGGAGAAGTCCAACTTaGCCAAGGGGAGATCTCCTAATTCATCTGGCAAAACATGAAGAT | + |
|
Preference number: 5 (lower is better) Translates to: SKQESQSLYYRRSPT*PRGDLLIHLAKHED Trigger: ATCTTCATGTTTTGCCAGATGAATTAGGAGATCTCCCCTTGGTCAAGTTGGACTTCTCCTGTAATAAAGTGACTGAGATTCCTGTTTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
||
| CDS TCA 90 bp | GAACAACTCCATCCATCAGTGCGGCTCCTATGTCATCAGGTAAAATaGCTTTTAATCTGGATTCAAGATTATTGCGAAGCTGCCTTATCT | + |
|
Preference number: 5 (lower is better) Translates to: EQLHPSVRLLCHQVK*LLIWIQDYCEAALS Trigger: AGATAAGGCAGCTTCGCAATAATCTTGAATCCAGATTAAAAGTCATTTTACCTGATGACATAGGAGCCGCACTGATGGATGGAGTTGTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000137665.2 ENSMUST00000152838.8 |
||
| CDS-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCTGTGCCGGTGGTACTaGCAATGGATTGTTATCCAA | + |
|
Preference number: 5 (lower is better) Translates to: TKRNMLGFWYMFVIVDCALCRWY*QWIVIQ Trigger: TTGGATAACAATCCATTGCAAGTACCACCGGCACAG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
||
| CDS-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCATTTCTTCGACATTTaGCCATGCTCAGCTTGGGCA | + |
|
Preference number: 5 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAHFFDI*PCSAWA Trigger: TGCCCAAGCTGAGCATGGCAAAATGTCGAAGAAATG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTCTTTTCTGATCTGCTaGCTTCGTCTCCTCTCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: TKRNMLGFWYMFVIVDCASFLIC*LRLLSS Trigger: TGAAGAGAGGAGACGAAGCAAGCAGATCAGAAAAGA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTAGATTCTGGCCACTGTaGATCAACTATTTGGTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: TKRNMLGFWYMFVIVDCARFWPL*INYLVL Trigger: AAGGACCAAATAGTTGATCAACAGTGGCCAGAATCT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTCTCCTCTCTTCATTTaGCCAGATTATAGGCTGAGA | + |
|
Preference number: 5 (lower is better) Translates to: TKRNMLGFWYMFVIVDCASPLFI*PDYRLR Trigger: TCTCAGCCTATAATCTGGCAAAATGAAGAGAGGAGA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTGCTCCTCATTCTCATaGCCACTTGAATTCTTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: TKRNMLGFWYMFVIVDCACSSFS*PLEFFL Trigger: AAGGAAGAATTCAAGTGGCAATGAGAATGAGGAGCA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
||
| CDS-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCTGGATTCAAGATTATaGCGAAGCTGCCTTATCTGT | + |
|
Preference number: 5 (lower is better) Translates to: TKRNMLGFWYMFVIVDCALDSRL*RSCLIC Trigger: ACAGATAAGGCAGCTTCGCAATAATCTTGAATCCAG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTTCCTCCTCATTCTCATaGCCACTTGAATTCTTCCTT | + |
|
Preference number: 5 (lower is better) Translates to: TKRNMLGFWYMFVIVDCASSSFS*PLEFFL Trigger: AAGGAAGAATTCAAGTGGCAATGAGAATGAGGAGGA...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000152838.8 |
||
| CDS-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTATGTTTGCTCTCTATTaGATTCTGAGACTTGAGAGT | + |
|
Preference number: 5 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAMFALY*ILRLES Trigger: ACTCTCAAGTCTCAGAATCAAATAGAGAGCAAACAT...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS-3UTR CAA 90 bp | ACTAAGAGAAATATGTTAGGGTTTTGGTATATGTTTGTCATTGTGGACTGTGCTCATTCTCATTGCCACTaGAATTCTTCCTTGTTGATT | + |
|
Preference number: 5 (lower is better) Translates to: TKRNMLGFWYMFVIVDCAHSHCH*NSSLLI Trigger: AATCAACAAGGAAGAATTCAAGTGGCAATGAGAATG...AGCACAGTCCACAATGACAAACATATACCAAAACCCTAACATATTTCTCTTAGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
||
| CDS GCA 72 bp | TCCTCCAGGGCCCGGTCCAGGCTCCTCACCGTGTGCTaGGGCTGCAAGCTCCCCGGGTGCCACTGCGGCCCA | + |
|
Preference number: 6 (lower is better) Translates to: SSRARSRLLTVC*GCKLPGCHCGP Trigger: TGGGCCGCAGTGGCACCCGGGGAGCTTGCAGCCGCAGCACACGGTGAGGAGCCTGGACCGGGCCCTGGAGGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
||
| CDS CCA 72 bp | TGGGGAACGGCTGACCGAAAAGAGTCGGTACCGGGATaGGCACCGCCACGGTCCCGCCACAGCCGCCACCTC | + |
|
Preference number: 6 (lower is better) Translates to: WGTADRKESVPG*APPRSRHSRHL Trigger: GAGGTGGCGGCTGTGGCGGGACCGTGGCGGTGCCCATCCCGGTACCGACTCTTTTCGGTCAGCCGTTCCCCA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
||
| CDS TCA 72 bp | CTCATTGTAAATCCTGGATCTGCTGCCCCGTATTCTTaGCGAGATGCACGACTGAAGGCTGATCTAGGCTTC | + |
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Preference number: 6 (lower is better) Translates to: LIVNPGSAAPYS*RDARLKADLGF Trigger: GAAGCCTAGATCAGCCTTCAGTCGTGCATCTCGTCAAGAATACGGGGCAGCAGATCCAGGATTTACAATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000137665.2 ENSMUST00000152838.8 |
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| CDS TCA 72 bp | CCAACTTTCACAAGACCTCGCTCTTCCAAAATATGGTaGGGCAAGCACAGTCTCTCCTGTGAAACACCCAAC | + |
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Preference number: 6 (lower is better) Translates to: PTFTRPRSSKIW*GKHSLSCETPN Trigger: GTTGGGTGTTTCACAGGAGAGACTGTGCTTGCCTCACCATATTTTGGAAGAGCGAGGTCTTGTGAAAGTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000137665.2 ENSMUST00000152838.8 |
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| CDS CAA 72 bp | GTATCTCCTTCTTCAGGAACTGCTACGTCTTCCGTGTaGGGATCAATAAAATCATACACCTCCTGGTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: VSPSSGTATSSV*GSIKSYTSWSF Trigger: GAAAGACCAGGAGGTGTATGATTTTATTGATCCCAACACGGAAGACGTAGCAGTTCCTGAAGAAGGAGATAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000137665.2 ENSMUST00000152838.8 |
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| CDS TCA 72 bp | GAATCTCAGTCACTTTATTACAGGAGAAGTCCAACTTaGCCAAGGGGAGATCTCCTAATTCATCTGGCAAAA | + |
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Preference number: 6 (lower is better) Translates to: ESQSLYYRRSPT*PRGDLLIHLAK Trigger: TTTTGCCAGATGAATTAGGAGATCTCCCCTTGGTCAAGTTGGACTTCTCCTGTAATAAAGTGACTGAGATTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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| CDS GCA 72 bp | ATGACTTTTAATCTGGATTCAAGATTATTGCGAAGCTaGCTTATCTGTTCACGCTCTTCCCGTAAATGCTCC | + |
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Preference number: 6 (lower is better) Translates to: MTFNLDSRLLRS*LICSRSSRKCS Trigger: GGAGCATTTACGGGAAGAGCGTGAACAGATAAGGCAGCTTCGCAATAATCTTGAATCCAGATTAAAAGTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000137665.2 ENSMUST00000152838.8 |
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| CDS CCA 72 bp | CCTCTCTTCATTTTGCCAGATTATAGGCTGAGATTCTaGCCACTGTTGATCAACTATTTGGTCCTTCTGATT | + |
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Preference number: 6 (lower is better) Translates to: PLFILPDYRLRF*PLLINYLVLLI Trigger: AATCAGAAGGACCAAATAGTTGATCAACAGTGGCCAGAATCTCAGCCTATAATCTGGCAAAATGAAGAGAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000137665.2 ENSMUST00000152838.8 |
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| CDS CAA 72 bp | AAGCCATCAGAGCGGTCATATTCCTCCTCATTCTCATaGCCACTTGAATTCTTCCTTGTTGATTTGTACTTG | + |
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Preference number: 6 (lower is better) Translates to: KPSERSYSSSFS*PLEFFLVDLYL Trigger: CAAGTACAAATCAACAAGGAAGAATTCAAGTGGCAATGAGAATGAGGAGGAATATGACCGCTCTGATGGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000152838.8 |
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| CDS CAA 90 bp | CTTTCTGAGAATCAGGCTTGCTTCCTGTTATATGACTGTCATTTCTaGATGTTTGCTCTCTATTTGATTCTGAGACTTGAGAGTGAAGGC | + |
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Preference number: 6 (lower is better) Translates to: LSENQACFLLYDCHF*MFALYLILRLESEG Trigger: GCCTTCACTCTCAAGTCTCAGAATCAAATAGAGAGCAAACATCAAGAAATGACAGTCATATAACAGGAAGCAAGCCTGATTCTCAGAAAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000137665.2 ENSMUST00000152838.8 |
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| CDS CAA 90 bp | GAAATATTCTTTTCTGATCTGCTTGCTTCGTCTCCTCTCTTCATTTaGCCAGATTATAGGCTGAGATTCTGGCCACTGTTGATCAACTAT | + |
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Preference number: 6 (lower is better) Translates to: EIFFSDLLASSPLFI*PDYRLRFWPLLINY Trigger: ATAGTTGATCAACAGTGGCCAGAATCTCAGCCTATAATCTGGCAAAATGAAGAGAGGAGACGAAGCAAGCAGATCAGAAAAGAATATTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000137665.2 ENSMUST00000152838.8 |
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| CDS GCA 72 bp | AATCATACACCTCCTGGTCTTTCTGAGAATCAGGCTTaGTTCCTGTTATATGACTGTCATTTCTTGATGTTT | + |
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Preference number: 6 (lower is better) Translates to: NHTPPGLSENQA*FLLYDCHFLMF Trigger: AAACATCAAGAAATGACAGTCATATAACAGGAAGCAAGCCTGATTCTCAGAAAGACCAGGAGGTGTATGATT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000137665.2 ENSMUST00000152838.8 |
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| CDS TCA 72 bp | CACAGTTTGTTTCAGCTTATTTCTCATGACAGAAGTTaGGTGATTAAGAATCCTGTTCTTCTGTTCTTGCTT | + |
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Preference number: 6 (lower is better) Translates to: HSLFQLISHDRS*VIKNPVLLFLL Trigger: AAGCAAGAACAGAAGAACAGGATTCTTAATCACTCAACTTCTGTCATGAGAAATAAGCTGAAACAAACTGTG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 ENSMUST00000152838.8 |
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| CDS CAA 72 bp | TTTCCAATTTCTTCGGGAATGGATACGAGTTTATTATaGCTGACAACCAAAACTTTAAGGGGAAGGTCAAAT | + |
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Preference number: 6 (lower is better) Translates to: FPISSGMDTSLL*LTTKTLRGRSN Trigger: ATTTGACCTTCCCCTTAAAGTTTTGGTTGTCAGCAATAATAAACTCGTATCCATTCCCGAAGAAATTGGAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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| CDS GCA 72 bp | ACTTTACCCTTTAAGCATATCTGTGCCGGTGGTACTTaGAATGGATTGTTATCCAAAATTATTACTTGTAAA | + |
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Preference number: 6 (lower is better) Translates to: TLPFKHICAGGT*NGLLSKIITCK Trigger: TTTACAAGTAATAATTTTGGATAACAATCCATTGCAAGTACCACCGGCACAGATATGCTTAAAGGGTAAAGT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000112819.9 ENSMUST00000136789.8 |
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