RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LRCH1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068015

Ensembl transcript IDs: ENSMUST00000088970.7, ENSMUST00000226799.2, ENSMUST00000228252.2

Found 306 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCTCCGGGACCTGGCAGGGAGGTGAGTTGGGGAGCAGGTACAGGTaGCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAG +
Preference number: 1 (lower is better)
Translates to: SSGTWQGGELGSRYR*QEQSPESLLWEEAE
Trigger: CTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCCCAACTCACCTCCCTGCCAGGTCCCGGAGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR GCA 90 bp AGTTGGGGAGCAGGTACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTaGTCTGGGAAGAGGCTGAGCCCACCCAGAGGAAAGGGCTTGGTC +
Preference number: 1 (lower is better)
Translates to: SWGAGTGARSRVQSP*SGKRLSPPRGKGLV
Trigger: GACCAAGCCCTTTCCTCTGGGTGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCCCAACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR GCA 90 bp CTCGCTGTGCACATAGCTGCCCACCAGGGGCCCTGCCCTGTGAGCTaGACACTTCCCAAGTTTCCTACCAGACACCATGACCCTTCCAAG +
Preference number: 1 (lower is better)
Translates to: LAVHIAAHQGPCPVS*TLPKFPTRHHDPSK
Trigger: CTTGGAAGGGTCATGGTGTCTGGTAGGAAACTTGGGAAGTGTGCAGCTCACAGGGCAGGGCCCCTGGTGGGCAGCTATGTGCACAGCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR TCA 90 bp TGGCGGTTGGTGAGTGTGGAAGGGATGAAGGGGATTGAAAGGCAATaGTGTGCTGCTACTCAGTTCTCCGCCAGCTCCCTGACCCGCTGT +
Preference number: 1 (lower is better)
Translates to: WRLVSVEGMKGIERQ*CAATQFSASSLTRC
Trigger: ACAGCGGGTCAGGGAGCTGGCGGAGAACTGAGTAGCAGCACATCATTGCCTTTCAATCCCCTTCATCCCTTCCACACTCACCAACCGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR TCA 90 bp GAGAGAGCAGGACCTACAGGAGCATCGCTGCCCACACCACGAGTGTaGAGGAGTATGAGGTATGCACTGACAGGCTTTGTCGCTGTCGCT +
Preference number: 1 (lower is better)
Translates to: ERAGPTGASLPTPRV*RSMRYALTGFVAVA
Trigger: AGCGACAGCGACAAAGCCTGTCAGTGCATACCTCATACTCCTTCACACTCGTGGTGTGGGCAGCGATGCTCCTGTAGGTCCTGCTCTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR GCA 90 bp GTGGACATTGGCTGCAATCCTCCTGGGTGCCCTTCACAAGCCCCTTaGAGCAAACAGGGAGGACTCCAACTAACCAGCCAGCAAAGCAGT +
Preference number: 1 (lower is better)
Translates to: VDIGCNPPGCPSQAP*SKQGGLQLTSQQSS
Trigger: ACTGCTTTGCTGGCTGGTTAGTTGGAGTCCTCCCTGTTTGCTGCAAGGGGCTTGTGAAGGGCACCCAGGAGGATTGCAGCCAATGTCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR GCA 90 bp AGCTCCCTGACCCGCTGTCAGGTAACACCTGCCCAACCTGAAACCTaGAGGCCAACTCTAAAAGGTCCTGAGTCCTCCCTTAGGCTGAAA +
Preference number: 1 (lower is better)
Translates to: SSLTRCQVTPAQPET*RPTLKGPESSLRLK
Trigger: TTTCAGCCTAAGGGAGGACTCAGGACCTTTTAGAGTTGGCCTGCAGGTTTCAGGTTGGGCAGGTGTTACCTGACAGCGGGTCAGGGAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR TCA 90 bp GACTGGGTTATCTGCCCACACCTACAGGGTGAGTGTGTGTGGGTGTaGCTGCCCCTGCATAGTCCTATGAAGCCTTCCTTGAAGGAAGCT +
Preference number: 1 (lower is better)
Translates to: DWVICPHLQGECVWV*LPLHSPMKPSLKEA
Trigger: AGCTTCCTTCAAGGAAGGCTTCATAGGACTATGCAGGGGCAGTCACACCCACACACACTCACCCTGTAGGTGTGGGCAGATAACCCAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR TCA 90 bp CATTTGGTAATGGCGGTTGGTGAGTGTGGAAGGGATGAAGGGGATTaGAAGGCAATGATGTGCTGCTACTCAGTTCTCCGCCAGCTCCCT +
Preference number: 1 (lower is better)
Translates to: HLVMAVGECGRDEGD*KAMMCCYSVLRQLP
Trigger: AGGGAGCTGGCGGAGAACTGAGTAGCAGCACATCATTGCCTTTCAATCCCCTTCATCCCTTCCACACTCACCAACCGCCATTACCAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR CCA 90 bp AGAAGCAGTGTTCGGCAAGAAGGATATAAAAGGAAGCCGACAATGTaGCTGGAGCTTGCAGCAGGGCCTTCTCACATTGTAAAGAGGCTT +
Preference number: 1 (lower is better)
Translates to: RSSVRQEGYKRKPTM*LELAAGPSHIVKRL
Trigger: AAGCCTCTTTACAATGTGAGAAGGCCCTGCTGCAAGCTCCAGCCACATTGTCGGCTTCCTTTTATATCCTTCTTGCCGAACACTGCTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR TCA 90 bp TGCAAGGAGTTTGGTTTTGATAAAACAGACGCACGCGACTCACTGTaGAATGGTTGTGCTTGGCATTTGGTAATGGCGGTTGGTGAGTGT +
Preference number: 1 (lower is better)
Translates to: CKEFGFDKTDARDSL*NGCAWHLVMAVGEC
Trigger: ACACTCACCAACCGCCATTACCAAATGCCAAGCACAACCATTTCACAGTGAGTCGCGTGCGTCTGTTTTATCAAAACCAAACTCCTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR TCA 90 bp TCTGCCACAGAAGAAGCACGTGTTTCTTGCTTAATTTTTCTTTCCTaGATCATATATACTACAGAATGCACACCAAGACCCGGAACTCCT +
Preference number: 1 (lower is better)
Translates to: SATEEARVSCLIFLS*IIYTTECTPRPGTP
Trigger: AGGAGTTCCGGGTCTTGGTGTGCATTCTGTAGTATATATGATTCAGGAAAGAAAAATTAAGCAAGAAACACGTGCTTCTTCTGTGGCAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR TCA 90 bp CATTGTAAAGAGGCTTCCAGAGACTCAGCAAGATATGGGCCAACATaGTTAGAGTCTAACATTTCTTCCTTTAACCACAAAAAGAAGCAC +
Preference number: 1 (lower is better)
Translates to: HCKEASRDSARYGPT*LESNISSFNHKKKH
Trigger: GTGCTTCTTTTTGTGGTTAAAGGAAGAAATGTTAGACTCTAATCATGTTGGCCCATATCTTGCTGAGTCTCTGGAAGCCTCTTTACAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR CCA 90 bp GTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTaGATGGAATGCAGAAATATAAATAAGAACGATGTTCCACAAACC +
Preference number: 1 (lower is better)
Translates to: VYYIGGQEGCWNVGN*MECRNINKNDVPQT
Trigger: GGTTTGTGGAACATCGTTCTTATTTATATTTCTGCATTCCATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR CCA 90 bp CTTAGGCTGAAACCACGCCAGTGCAGTTCCTCCTCCGGGACCTGGCAGGGAGGTCCAGAGTCCCTGCTCTaGGAAGAGGCTGAGCCCACC +
Preference number: 2 (lower is better)
Translates to: LRLKPRQCSSSSGTWQGGPESLL*EEAEPT
Trigger: GGTGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGG...ACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR CCA 90 bp TGCTGCTACTCAGTTCTCCGCCAGCTCCCTGACCCGCTGTCAGGTAACACCTGCGGCAGGGAGGTGAGTTaGGGAGCAGGTACAGGTGCC +
Preference number: 2 (lower is better)
Translates to: CCYSVLRQLPDPLSGNTCGREVS*GAGTGA
Trigger: GGCACCTGTACCTGCTCCCCAACTCACCTCCCTGCC...GCAGGTGTTACCTGACAGCGGGTCAGGGAGCTGGCGGAGAACTGAGTAGCAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR TCA 90 bp GCAATGATGTGCTGCTACTCAGTTCTCCGCCAGCTCCCTGACCCGCTGTCAGGTGCTCTGGGAAGAGGCTaGGCCCACCCAGAGGAAAGG +
Preference number: 2 (lower is better)
Translates to: AMMCCYSVLRQLPDPLSGALGRG*AHPEER
Trigger: CCTTTCCTCTGGGTGGGCTCAGCCTCTTCCCAGAGC...ACCTGACAGCGGGTCAGGGAGCTGGCGGAGAACTGAGTAGCAGCACATCATTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR GCA 90 bp CCAGGTGGCGCTCTAACAGGAAGGCACTTCCCCAGATTAGGCCTGCAGAGGGCATGGGCTGGACCAGGATaGCAGAGCAGAGCGTTTGGA +
Preference number: 2 (lower is better)
Translates to: PGGALTGRHFPRLGLQRAWAGPG*QSRAFG
Trigger: TCCAAACGCTCTGCTCTGGCATCCTGGTCCAGCCCA...TGCCCTCTGCAGGCCTAATCTGGGGAAGTGCCTTCCTGTTAGAGCGCCACCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR GCA 90 bp TCCCTGACCCGCTGTCAGGTAACACCTGCCCAACCTGAAACCTGCAGGCCAACTAGAGTCCAGAGTCCCTaGTCTGGGAAGAGGCTGAGC +
Preference number: 2 (lower is better)
Translates to: SLTRCQVTPAQPETCRPTRVQSP*SGKRLS
Trigger: GCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCT...AGTTGGCCTGCAGGTTTCAGGTTGGGCAGGTGTTACCTGACAGCGGGTCAGGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR GCA 90 bp GCAATGATGTGCTGCTACTCAGTTCTCCGCCAGCTCCCTGACCCGCTGTCAGGTAGAGTCCAGAGTCCCTaGTCTGGGAAGAGGCTGAGC +
Preference number: 2 (lower is better)
Translates to: AMMCCYSVLRQLPDPLSGRVQSP*SGKRLS
Trigger: GCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCT...ACCTGACAGCGGGTCAGGGAGCTGGCGGAGAACTGAGTAGCAGCACATCATTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR CAA 90 bp GGTGGACATTGGCTGCAATCCTCCTGGGTGCCCTTCACAAGCCCCTaGCAGCAAACAGGGAGGACTCCAACTAACCAGCCAGCAAAGCAG +
Preference number: 2 (lower is better)
Translates to: GGHWLQSSWVPFTSP*QQTGRTPTNQPAKQ
Trigger: CTGCTTTGCTGGCTGGTTAGTTGGAGTCCTCCCTGTTTGCTGCAAGGGGCTTGTGAAGGGCACCCAGGAGGATTGCAGCCAATGTCCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR GCA 90 bp CCAGGTGGCGCTCTAACAGGAAGGCACTTCCCCAGATTAGGCCTGCAGAGGGCAGTTCTCCTTACCTCCTaGACAGAGCAGAGGCTCATG +
Preference number: 2 (lower is better)
Translates to: PGGALTGRHFPRLGLQRAVLLTS*TEQRLM
Trigger: CATGAGCCTCTGCTCTGTGCAGGAGGTAAGGAGAAC...TGCCCTCTGCAGGCCTAATCTGGGGAAGTGCCTTCCTGTTAGAGCGCCACCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR CCA 90 bp ACCCGCTGTCAGGTAACACCTGCCCAACCTGAAACCTGCAGGCCAACTCTAAAACCAGAGTCCCTGCTCTaGGAAGAGGCTGAGCCCACC +
Preference number: 2 (lower is better)
Translates to: TRCQVTPAQPETCRPTLKPESLL*EEAEPT
Trigger: GGTGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGG...TTTTAGAGTTGGCCTGCAGGTTTCAGGTTGGGCAGGTGTTACCTGACAGCGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR CCA 90 bp CATAGTCCTATGAAGCCTTCCTTGAAGGAAGCTCACCCACTGACAGGATGGGGTTCCTCCTCCGGGACCTaGCAGGGAGGTGAGTTGGGG +
Preference number: 2 (lower is better)
Translates to: HSPMKPSLKEAHPLTGWGSSSGT*QGGELG
Trigger: CCCCAACTCACCTCCCTGCCAGGTCCCGGAGGAGGA...ACCCCATCCTGTCAGTGGGTGAGCTTCCTTCAAGGAAGGCTTCATAGGACTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR-3UTR GCA 90 bp CCAGGTGGCGCTCTAACAGGAAGGCACTTCCCCAGATTAGGCCTGCAGAGGGCAAAGGAGTATGAGGTATaGACTGACAGGCTTTGTCGC +
Preference number: 2 (lower is better)
Translates to: PGGALTGRHFPRLGLQRAKEYEV*TDRLCR
Trigger: GCGACAAAGCCTGTCAGTGCATACCTCATACTCCTT...TGCCCTCTGCAGGCCTAATCTGGGGAAGTGCCTTCCTGTTAGAGCGCCACCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR TCA 90 bp AACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCGCTCTGGGAAGAGGCTaGGCCCACCCAGAGGAAAGG +
Preference number: 2 (lower is better)
Translates to: NTSQKTALSVCHRRSTCFALGRG*AHPEER
Trigger: CCTTTCCTCTGGGTGGGCTCAGCCTCTTCCCAGAGC...GAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR GCA 90 bp ACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTGGGAGCAGGTACAGGTaGCAGGAGCAGAGTCCAGAG +
Preference number: 2 (lower is better)
Translates to: TPLRKQLSLSATEEARVSGSRYR*QEQSPE
Trigger: CTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCC...AGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR TCA 90 bp GCAAGGAGTTTGGTTTTGATAAAACAGACGCACGCGACTCACTGTGAAATGGTTGACCTGGCAGGGAGGTaGGTTGGGGAGCAGGTACAG +
Preference number: 2 (lower is better)
Translates to: ARSLVLIKQTHATHCEMVDLAGR*VGEQVQ
Trigger: CTGTACCTGCTCCCCAACTCACCTCCCTGCCAGGTC...AACCATTTCACAGTGAGTCGCGTGCGTCTGTTTTATCAAAACCAAACTCCTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR TCA 90 bp GTCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATGACCTGGCAGGGAGGTaGGTTGGGGAGCAGGTACAG +
Preference number: 2 (lower is better)
Translates to: VSLLYWGTRGLLECRKLDDLAGR*VGEQVQ
Trigger: CTGTACCTGCTCCCCAACTCACCTCCCTGCCAGGTC...ATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR TCA 90 bp TGTTGGCTTCCTGACTTGAGCTCTTACGGCCCTTGTAGCTTGATGGTCAACTTCAGTCCTCCCTTAGGCTaGAACCACGCCAGTGCAGTT +
Preference number: 2 (lower is better)
Translates to: CWLPDLSSYGPCSLMVNFSPPLG*NHASAV
Trigger: AACTGCACTGGCGTGGTTTCAGCCTAAGGGAGGACT...GAAGTTGACCATCAAGCTACAAGGGCCGTAAGAGCTCAAGTCAGGAAGCCAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR-3UTR CCA 90 bp GTCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATGGCAGGGAGGTGAGTTaGGGAGCAGGTACAGGTGCC +
Preference number: 2 (lower is better)
Translates to: VSLLYWGTRGLLECRKLDGREVS*GAGTGA
Trigger: GGCACCTGTACCTGCTCCCCAACTCACCTCCCTGCC...ATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR CCA 90 bp CAACACAATGCTGGGAGGAAGAGGCTCAGACAATCTAACATCTTATGGCATAAAGGGGAGGAGCTGGGCTaGACCAGGATGCCAGAGCAG +
Preference number: 2 (lower is better)
Translates to: QHNAGRKRLRQSNILWHKGEELG*TRMPEQ
Trigger: CTGCTCTGGCATCCTGGTCCAGCCCAGCTCCTCCCC...TTTATGCCATAAGATGTTAGATTGTCTGAGCCTCTTCCTCCCAGCATTGTGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR TCA 90 bp CCTCTCATCTTTACACTGCTATGCCATCTGACAAAACAGGCATTTGTGCAGTACAGGAAGCTCACCCACTaGCAGGATGGGGTGTGCTCC +
Preference number: 2 (lower is better)
Translates to: PLIFTLLCHLTKQAFVQYRKLTH*QDGVCS
Trigger: GGAGCACACCCCATCCTGTCAGTGGGTGAGCTTCCT...GTACTGCACAAATGCCTGTTTTGTCAGATGGCATAGCAGTGTAAAGATGAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR-3UTR TCA 90 bp CCAGGTGGCGCTCTAACAGGAAGGCACTTCCCCAGATTAGGCCTGCAGAGGGCAGTTTATAAATTAGACTaGGCCCAAATGCTGGCTTTT +
Preference number: 2 (lower is better)
Translates to: PGGALTGRHFPRLGLQRAVYKLD*AQMLAF
Trigger: AAAAGCCAGCATTTGGGCTCAGTCTAATTTATAAAC...TGCCCTCTGCAGGCCTAATCTGGGGAAGTGCCTTCCTGTTAGAGCGCCACCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR TCA 90 bp CCCTTCAAGTATGGAGGCATCTCAGAATCTCATCTCCCCTGTTCTCATGAATATCTTTGCCCCAAAAGCTaGGAGGCCGATACGCAAGCC +
Preference number: 2 (lower is better)
Translates to: PFKYGGISESHLPCSHEYLCPKS*EADTQA
Trigger: GGCTTGCGTATCGGCCTCTCAGCTTTTGGGGCAAAG...ATATTCATGAGAACAGGGGAGATGAGATTCTGAGATGCCTCCATACTTGAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR GCA 90 bp TGGCTGGAGCTTGCAGCAGGGCCTTCTCACATTGTAAAGAGGCTTCCAGAGACTGATCTTATCATCTGCTaGTATAGTAACCCAAGGCCC +
Preference number: 2 (lower is better)
Translates to: WLELAAGPSHIVKRLPETDLIIC*YSNPRP
Trigger: GGGCCTTGGGTTACTATAGCAGCAGATGATAAGATC...AGTCTCTGGAAGCCTCTTTACAATGTGAGAAGGCCCTGCTGCAAGCTCCAGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR CCA 90 bp CTCAGCTTCAGAACACCACCTAATAAAAAGGAAAAGCGGGCTAAGCAGATCCACGAGGGCATGCTCTGGTaGACATTGGCTGCAATCCTC +
Preference number: 2 (lower is better)
Translates to: LSFRTPPNKKEKRAKQIHEGMLW*TLAAIL
Trigger: GAGGATTGCAGCCAATGTCCACCAGAGCATGCCCTC...GTGGATCTGCTTAGCCCGCTTTTCCTTTTTATTAGGTGGTGTTCTGAAGCTGAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR CAA 90 bp CGTCCATGTTGGCTTCCTGACTTGAGCTCTTACGGCCCTTGTAGCTaGATGGTCAACTTCAACCTGCTCCATGTTTTCATCCCTTTCTTC +
Preference number: 2 (lower is better)
Translates to: RPCWLPDLSSYGPCS*MVNFNLLHVFIPFF
Trigger: GAAGAAAGGGATGAAAACATGGAGCAGGTTGAAGTTGACCATCAAGCTACAAGGGCCGTAAGAGCTCAAGTCAGGAAGCCAACATGGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR-3UTR TCA 90 bp TCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATGAACACCTGCCCAACCTaGAACCTGCAGGCCAACTCT +
Preference number: 2 (lower is better)
Translates to: SVYYIGGQEGCWNVGNWMNTCPT*NLQANS
Trigger: AGAGTTGGCCTGCAGGTTTCAGGTTGGGCAGGTGTT...CATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR TCA 90 bp GAACCCTGTATTCACCATCAACACAATGCTGGGAGGAAGAGGCTCAGACAATCTAACTCGACAGCTAACTaGAGAGATGACAGGGATGGG +
Preference number: 2 (lower is better)
Translates to: EPCIHHQHNAGRKRLRQSNSTAN*RDDRDG
Trigger: CCCATCCCTGTCATCTCTTCAGTTAGCTGTCGAGTT...AGATTGTCTGAGCCTCTTCCTCCCAGCATTGTGTTGATGGTGAATACAGGGTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR GCA 90 bp TCTACATTTTGGCATCTCTTGTTCTTTGAACACCAGCAGTTGTACGTCCATGTTGGGAGCAGGTACAGGTaGCAGGAGCAGAGTCCAGAG +
Preference number: 2 (lower is better)
Translates to: STFWHLLFFEHQQLYVHVGSRYR*QEQSPE
Trigger: CTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCC...AACATGGACGTACAACTGCTGGTGTTCAAAGAACAAGAGATGCCAAAATGTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR-3UTR GCA 90 bp CATAGTCCTATGAAGCCTTCCTTGAAGGAAGCTCACCCACTGACAGGATGGGGTACTGTGAAATGGTTGTaGTTGGCATTTGGTAATGGC +
Preference number: 2 (lower is better)
Translates to: HSPMKPSLKEAHPLTGWGTVKWL*LAFGNG
Trigger: GCCATTACCAAATGCCAAGCACAACCATTTCACAGT...ACCCCATCCTGTCAGTGGGTGAGCTTCCTTCAAGGAAGGCTTCATAGGACTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR-3UTR CCA 90 bp CAACACAATGCTGGGAGGAAGAGGCTCAGACAATCTAACATCTTATGGCATAAACAGAGCAGAGGCTCATaGGAGAGAGCAGGACCTACA +
Preference number: 2 (lower is better)
Translates to: QHNAGRKRLRQSNILWHKQSRGS*ERAGPT
Trigger: TGTAGGTCCTGCTCTCTCCCATGAGCCTCTGCTCTG...TTTATGCCATAAGATGTTAGATTGTCTGAGCCTCTTCCTCCCAGCATTGTGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR TCA 90 bp CTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTTGCTTAATTTTTCTTTCCAGGGATGAAGGGGATTaGAAGGCAATGATGTGCTGC +
Preference number: 2 (lower is better)
Translates to: LSLSATEEARVSCLIFLSRDEGD*KAMMCC
Trigger: GCAGCACATCATTGCCTTTCAATCCCCTTCATCCCT...GGAAAGAAAAATTAAGCAAGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR GCA 90 bp AAACTGAAGAGTCAAATGCATCACATTCTGGGTCTGCAGTTATTCAATATACCACTGGTGGACATTGGCTaGAATCCTCCTGGGTGCCCT +
Preference number: 2 (lower is better)
Translates to: KLKSQMHHILGLQLFNIPLVDIG*NPPGCP
Trigger: AGGGCACCCAGGAGGATTGCAGCCAATGTCCACCAG...TGGTATATTGAATAACTGCAGACCCAGAATGTGATGCATTTGACTCTTCAGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR TCA 90 bp CTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTTGCTTAATTTTTCTTTCCGGGATTGAAAGGCAATaGTGTGCTGCTACTCAGTTC +
Preference number: 2 (lower is better)
Translates to: LSLSATEEARVSCLIFLSGIERQ*CAATQF
Trigger: GAACTGAGTAGCAGCACATCATTGCCTTTCAATCCC...GGAAAGAAAAATTAAGCAAGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR CCA 90 bp GTACAAAGGGATTTTATTGTTACAGAAAAGTACAAGATAGCACCAAAGACGACTAGGAAGCCGACAATGTaGCTGGAGCTTGCAGCAGGG +
Preference number: 2 (lower is better)
Translates to: VQRDFIVTEKYKIAPKTTRKPTM*LELAAG
Trigger: CCCTGCTGCAAGCTCCAGCCACATTGTCGGCTTCCT...AGTCGTCTTTGGTGCTATCTTGTACTTTTCTGTAACAATAAAATCCCTTTGTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR TCA 90 bp CAACACAATGCTGGGAGGAAGAGGCTCAGACAATCTAACATCTTATGGCATAAAATCAACTGCCAGTCCTaGATTAGGACCAGAATCAAG +
Preference number: 2 (lower is better)
Translates to: QHNAGRKRLRQSNILWHKINCQS*IRTRIK
Trigger: CTTGATTCTGGTCCTAATTCAGGACTGGCAGTTGAT...TTTATGCCATAAGATGTTAGATTGTCTGAGCCTCTTCCTCCCAGCATTGTGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR GCA 90 bp CCCTTCAAGTATGGAGGCATCTCAGAATCTCATCTCCCCTGTTCTCATGAATATGACCCCGTCACATTATaGAAAAATAGAAATCCCTTC +
Preference number: 2 (lower is better)
Translates to: PFKYGGISESHLPCSHEYDPVTL*KNRNPF
Trigger: GAAGGGATTTCTATTTTTGCATAATGTGACGGGGTC...ATATTCATGAGAACAGGGGAGATGAGATTCTGAGATGCCTCCATACTTGAAGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR CCA 90 bp CCTCTCATCTTTACACTGCTATGCCATCTGACAAAACAGGCATTTGTGCAGTACCCACAAACCAAAAGGTaGATAACACCTCTCAGAAAA +
Preference number: 2 (lower is better)
Translates to: PLIFTLLCHLTKQAFVQYPQTKR*ITPLRK
Trigger: TTTTCTGAGAGGTGTTATCCACCTTTTGGTTTGTGG...GTACTGCACAAATGCCTGTTTTGTCAGATGGCATAGCAGTGTAAAGATGAGAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR-3UTR CCA 90 bp GTCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATCCACAAACCAAAAGGTaGATAACACCTCTCAGAAAA +
Preference number: 2 (lower is better)
Translates to: VSLLYWGTRGLLECRKLDPQTKR*ITPLRK
Trigger: TTTTCTGAGAGGTGTTATCCACCTTTTGGTTTGTGG...ATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR TCA 90 bp ACTTATCATACTACCAGCCAGCCATGCACATTTCATTGCACATATAGACATAGTCAGCATTCCCAAACTTaGCAGATGAATGACTGGGTT +
Preference number: 2 (lower is better)
Translates to: TYHTTSQPCTFHCTYRHSQHSQT*QMNDWV
Trigger: AACCCAGTCATTCATCTGTCAAGTTTGGGAATGCTG...ACTATGTCTATATGTGCAATGAAATGTGCATGGCTGGCTGGTAGTATGATAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR-3UTR GCA 90 bp AACCCTGTATTCACCATCAACACAATGCTGGGAGGAAGAGGCTCAGACAATCTAATCACATTCTGGGTCTaGAGTTATTCAATATACCAA +
Preference number: 2 (lower is better)
Translates to: NPVFTINTMLGGRGSDNLITFWV*SYSIYQ
Trigger: TTGGTATATTGAATAACTGCAGACCCAGAATGTGAT...TAGATTGTCTGAGCCTCTTCCTCCCAGCATTGTGTTGATGGTGAATACAGGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR GCA 90 bp AGGGATTTTATTGTTACAGAAAAGTACAAGATAGCACCAAAGACGACTCATAACTCACCATCAACACAATaGTGGGAGGAAGAGGCTCAG +
Preference number: 2 (lower is better)
Translates to: RDFIVTEKYKIAPKTTHNSPSTQ*WEEEAQ
Trigger: CTGAGCCTCTTCCTCCCAGCATTGTGTTGATGGTGA...GTTATGAGTCGTCTTTGGTGCTATCTTGTACTTTTCTGTAACAATAAAATCCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR CCA 90 bp CAACACAATGCTGGGAGGAAGAGGCTCAGACAATCTAACATCTTATGGCATAAACATATCTCAGCAAACTaGACATTTATCTTGACGGCA +
Preference number: 2 (lower is better)
Translates to: QHNAGRKRLRQSNILWHKHISAN*TFILTA
Trigger: TGCCGTCAAGATAAATGTCCAGTTTGCTGAGATATG...TTTATGCCATAAGATGTTAGATTGTCTGAGCCTCTTCCTCCCAGCATTGTGTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR CAA 90 bp AGCTTGATAATAATAAAAACGAGTATGTCTACATTTTGGCATCTCTaGTTCTTTGAACACCAGCAGTTGTACGTCCATGTTGGCTTCCTG +
Preference number: 2 (lower is better)
Translates to: SLIIIKTSMSTFWHL*FFEHQQLYVHVGFL
Trigger: CAGGAAGCCAACATGGACGTACAACTGCTGGTGTTCAAAGAACAAGAGATGCCAAAATGTAGACATACTCGTTTTTATTATTATCAAGCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR-3UTR CCA 90 bp GAACGTTCATATCTCAGCAAACTGGACATTTATCTTGACGGCATTAACACCACCAAATGCATCACATTCTaGGTCTGCAGTTATTCAATA +
Preference number: 2 (lower is better)
Translates to: ERSYLSKLDIYLDGINTTKCITF*VCSYSI
Trigger: TATTGAATAACTGCAGACCCAGAATGTGATGCATTT...GGTGGTGTTAATGCCGTCAAGATAAATGTCCAGTTTGCTGAGATATGAACGTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR CCA 90 bp CAACACAATGCTGGGAGGAAGAGGCTCAGACAATCTAACATCTTATGGCATAAAAAATCAAAGGCCAAATaGACATTCAAAGTAAATGGG +
Preference number: 2 (lower is better)
Translates to: QHNAGRKRLRQSNILWHKKSKAK*TFKVNG
Trigger: CCCATTTACTTTGAATGTCCATTTGGCCTTTGATTT...TTTATGCCATAAGATGTTAGATTGTCTGAGCCTCTTCCTCCCAGCATTGTGTTG
39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR GCA 90 bp GTTCCAGGATCCATAGACTTATTTGAAACTGAAGAGTCAAATGCATCACATTCTATTCTACAAAGTTTGTaGTTCAGGAAAAATCTGGCT +
Preference number: 2 (lower is better)
Translates to: VPGSIDLFETEESNASHSILQSL*FRKNLA
Trigger: AGCCAGATTTTTCCTGAAGCACAAACTTTGTAGAAT...AGAATGTGATGCATTTGACTCTTCAGTTTCAAATAAGTCTATGGATCCTGGAAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR GCA 72 bp GGTCCTGAGTCCTCCCTTAGGCTGAAACCACGCCAGTaGAGTTCCTCCTCCGGGACCTGGCAGGGAGGTGAG +
Preference number: 3 (lower is better)
Translates to: GPESSLRLKPRQ*SSSSGTWQGGE
Trigger: CTCACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAGGGAGGACTCAGGACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR CCA 72 bp CCCACTGACAGGATGGGGTGTGCTCCTTTCTTGGCCTaGCTCCCTGCTAGTCCTAATGTGCTTGCCCCTGCC +
Preference number: 3 (lower is better)
Translates to: PTDRMGCAPFLA*LPASPNVLAPA
Trigger: GGCAGGGGCAAGCACATTAGGACTAGCAGGGAGCCAGGCCAAGAAAGGAGCACACCCCATCCTGTCAGTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR GCA 72 bp CACATAGCTGCCCACCAGGGGCCCTGCCCTGTGAGCTaGACACTTCCCAAGTTTCCTACCAGACACCATGAC +
Preference number: 3 (lower is better)
Translates to: HIAAHQGPCPVS*TLPKFPTRHHD
Trigger: GTCATGGTGTCTGGTAGGAAACTTGGGAAGTGTGCAGCTCACAGGGCAGGGCCCCTGGTGGGCAGCTATGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR CCA 72 bp ATTAGGCCTGCAGAGGGCACAGAGGGCATGCTCTGGTaGACATTGGCTGCAATCCTCCTGGGTGCCCTTCAC +
Preference number: 3 (lower is better)
Translates to: IRPAEGTEGMLW*TLAAILLGALH
Trigger: GTGAAGGGCACCCAGGAGGATTGCAGCCAATGTCCACCAGAGCATGCCCTCTGTGCCCTCTGCAGGCCTAAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR GCA 72 bp CATGCTCTGGTGGACATTGGCTGCAATCCTCCTGGGTaGCCTTCACAAGCCCCTTGCAGCAAACAGGGAGGA +
Preference number: 3 (lower is better)
Translates to: HALVDIGCNPPG*PSQAPCSKQGG
Trigger: TCCTCCCTGTTTGCTGCAAGGGGCTTGTGAAGGGCACCCAGGAGGATTGCAGCCAATGTCCACCAGAGCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR GCA 72 bp AGCTGCCAATCTGAAGTCCCACACTCAGAACCCATCTaGCATGCCCTGAGGCAGTGTCTGTCGGTGTGTGTG +
Preference number: 3 (lower is better)
Translates to: SCQSEVPHSEPI*HALRQCLSVCV
Trigger: CACACACACCGACAGACACTGCCTCAGGGCATGGCAGATGGGTTCTGAGTGTGGGACTTCAGATTGGCAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR TCA 72 bp ATCTGCCCACACCTACAGGGTGAGTGTGTGTGGGTGTaGCTGCCCCTGCATAGTCCTATGAAGCCTTCCTTG +
Preference number: 3 (lower is better)
Translates to: ICPHLQGECVWV*LPLHSPMKPSL
Trigger: CAAGGAAGGCTTCATAGGACTATGCAGGGGCAGTCACACCCACACACACTCACCCTGTAGGTGTGGGCAGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR GCA 72 bp ACCCGCTGTCAGGTAACACCTGCCCAACCTGAAACCTaGAGGCCAACTCTAAAAGGTCCTGAGTCCTCCCTT +
Preference number: 3 (lower is better)
Translates to: TRCQVTPAQPET*RPTLKGPESSL
Trigger: AAGGGAGGACTCAGGACCTTTTAGAGTTGGCCTGCAGGTTTCAGGTTGGGCAGGTGTTACCTGACAGCGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR-3UTR CAA 90 bp ACAATGCTGGGAGGAAGAGGCTCAGACAATCTAACATCTTATGGCATAAAGAATCCCTTCACAAGCCCCTaGCAGCAAACAGGGAGGACT +
Preference number: 3 (lower is better)
Translates to: TMLGGRGSDNLTSYGIKNPFTSP*QQTGRT
Trigger: AGTCCTCCCTGTTTGCTGCAAGGGGCTTGTGAAGGG...ATTCTTTATGCCATAAGATGTTAGATTGTCTGAGCCTCTTCCTCCCAGCATTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR TCA 72 bp TGCAAGGCAACCCCTCTACAGATCAACTGCCAGTCCTaGATTAGGACCAGAATCAAGTATCAAGACTCCTGT +
Preference number: 3 (lower is better)
Translates to: CKATPLQINCQS*IRTRIKYQDSC
Trigger: ACAGGAGTCTTGATACTTGATTCTGGTCCTAATTCAGGACTGGCAGTTGATCTGTAGAGGGGTTGCCTTGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR-3UTR CAA 90 bp TCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATGGTGAAATGGTTGTGCTaGGCATTTGGTAATGGCGGT +
Preference number: 3 (lower is better)
Translates to: SVYYIGGQEGCWNVGNWMVKWLC*AFGNGG
Trigger: ACCGCCATTACCAAATGCCAAGCACAACCATTTCAC...CATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR CCA 72 bp TGGGGTGCTCTCTTGATTTCAGTCAGTTTATTATATTaGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTG +
Preference number: 3 (lower is better)
Translates to: WGALLISVSLLY*GTRGLLECRKL
Trigger: CAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGACTGAAATCAAGAGAGCACCCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR-3UTR CAA 90 bp AGGGATTTTATTGTTACAGAAAAGTACAAGATAGCACCAAAGACGACTCATAACCAATGTGGCTGGAGCTaGCAGCAGGGCCTTCTCACA +
Preference number: 3 (lower is better)
Translates to: RDFIVTEKYKIAPKTTHNQCGWS*QQGLLT
Trigger: TGTGAGAAGGCCCTGCTGCAAGCTCCAGCCACATTG...GTTATGAGTCGTCTTTGGTGCTATCTTGTACTTTTCTGTAACAATAAAATCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR TCA 72 bp TTTGGTTTTGATAAAACAGACGCACGCGACTCACTGTaGAATGGTTGTGCTTGGCATTTGGTAATGGCGGTT +
Preference number: 3 (lower is better)
Translates to: FGFDKTDARDSL*NGCAWHLVMAV
Trigger: AACCGCCATTACCAAATGCCAAGCACAACCATTTCACAGTGAGTCGCGTGCGTCTGTTTTATCAAAACCAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR TCA 72 bp GAGGCTTCCAGAGACTCAGCAAGATATGGGCCAACATaGTTAGAGTCTAACATTTCTTCCTTTAACCACAAA +
Preference number: 3 (lower is better)
Translates to: EASRDSARYGPT*LESNISSFNHK
Trigger: TTTGTGGTTAAAGGAAGAAATGTTAGACTCTAATCATGTTGGCCCATATCTTGCTGAGTCTCTGGAAGCCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR GCA 72 bp TTTCAGTCAGTTTATTATATTGGGGGACAAGAGGGCTaGTGGAATGTAGGAAACTGGATGGAATGCAGAAAT +
Preference number: 3 (lower is better)
Translates to: FQSVYYIGGQEG*WNVGNWMECRN
Trigger: ATTTCTGCATTCCATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGACTGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR GCA 72 bp AAGATACATGTAAAAATATACTTCAGGACTCTGGGGTaGAAAGCCCTGAAGGTACAACATTCTAGACCATCA +
Preference number: 3 (lower is better)
Translates to: KIHVKIYFRTLG*KALKVQHSRPS
Trigger: TGATGGTCTAGAATGTTGTACCTTCAGGGCTTTGCACCCCAGAGTCCTGAAGTATATTTTTACATGTATCTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR CCA 72 bp AGCAGCAAAGATTCTATAAATATAACCCTTCAAGTATaGAGGCATCTCAGAATCTCATCTCCCCTGTTCTCA +
Preference number: 3 (lower is better)
Translates to: SSKDSINITLQV*RHLRISSPLFS
Trigger: TGAGAACAGGGGAGATGAGATTCTGAGATGCCTCCATACTTGAAGGGTTATATTTATAGAATCTTTGCTGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR GCA 72 bp TACATTCTGTCTACTTATCATACTACCAGCCAGCCATaGACATTTCATTGCACATATAGACATAGTGTACAG +
Preference number: 3 (lower is better)
Translates to: YILSTYHTTSQP*TFHCTYRHSVQ
Trigger: CTGTACACTATGTCTATATGTGCAATGAAATGTGCATGGCTGGCTGGTAGTATGATAAGTAGACAGAATGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR TCA 72 bp CTTCAACATCTACCTCTGGTCCTAGATGCTCCTCAATaGCATAAAGTACAGTGCAAAAATTATACTTCAAGA +
Preference number: 3 (lower is better)
Translates to: LQHLPLVLDAPQ*HKVQCKNYTSR
Trigger: TCTTGAAGTATAATTTTTGCACTGTACTTTATGTCATTGAGGAGCATCTAGGACCAGAGGTAGATGTTGAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR TCA 72 bp TCAGAAAAATATGATAATCTTCATAGCAGCCATATCTaGGGAACGTTCATATCTCAGCAAACTGGACATTTA +
Preference number: 3 (lower is better)
Translates to: SEKYDNLHSSHI*GTFISQQTGHL
Trigger: TAAATGTCCAGTTTGCTGAGATATGAACGTTCCTCAGATATGGCTGCTATGAAGATTATCATATTTTTCTGA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR GCA 72 bp AAATTACCCAGTGGGAACTGTATTCTACAAAGTTTGTaGTTCAGGAAAAATCTGGCTTATAAATGTTCAGTT +
Preference number: 3 (lower is better)
Translates to: KLPSGNCILQSL*FRKNLAYKCSV
Trigger: AACTGAACATTTATAAGCCAGATTTTTCCTGAAGCACAAACTTTGTAGAATACAGTTCCCACTGGGTAATTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR CCA 72 bp AGCTTGATAATAATAAAAACGAGTATGTCTACATTTTaGCATCTCTTGTTCTTTGAACACCAGCAGTTGTAC +
Preference number: 3 (lower is better)
Translates to: SLIIIKTSMSTF*HLLFFEHQQLY
Trigger: GTACAACTGCTGGTGTTCAAAGAACAAGAGATGCCAAAATGTAGACATACTCGTTTTTATTATTATCAAGCT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR CCA 90 bp CTTAGGCTGAAACCACGCCAGTGCAGTTCCTCCTCCGGGACCTGGCAGGGAGGTCCGCCGGTGCCTCCGTaGTGCTGGTGGTGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: LRLKPRQCSSSSGTWQGGPPVPP*CWWCWW
Trigger: CCACCAACACCACCAGCACCACGGAGGCACCGGCGG...ACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp CAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAGCCCACCCAGAGGGGACGACACCATCCATaGGTGCCGCCCCCAGGTCTT +
Preference number: 4 (lower is better)
Translates to: QEQSPESLLWEEAEPTQRGRHHP*VPPPGL
Trigger: AAGACCTGGGGGCGGCACTCATGGATGGTGTCGTCC...CCTCTGGGTGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp TGCTGCTACTCAGTTCTCCGCCAGCTCCCTGACCCGCTGTCAGGTAACACCTGCGCGGGCGCGAAAGCTTaGGGTTCGCTTCCCGGCGTC +
Preference number: 4 (lower is better)
Translates to: CCYSVLRQLPDPLSGNTCAGAKA*GSLPGV
Trigger: GACGCCGGGAAGCGAACCCCAAGCTTTCGCGCCCGC...GCAGGTGTTACCTGACAGCGGGTCAGGGAGCTGGCGGAGAACTGAGTAGCAGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp CAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAGCCCACCCAGAGGGCCCCCAGGTCTTCATaGAGGGTCACCTTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: QEQSPESLLWEEAEPTQRAPRSS*RVTFSL
Trigger: GAGGCTGAAGGTGACCCTTCATGAAGACCTGGGGGC...CCTCTGGGTGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp CTTAGGCTGAAACCACGCCAGTGCAGTTCCTCCTCCGGGACCTGGCAGGGAGGTCGAGTGTCGAGCATCTaGACGGCCAGCAAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: LRLKPRQCSSSSGTWQGGRVSSI*TASKLL
Trigger: GAGCAGCTTGCTGGCCGTGCAGATGCTCGACACTCG...ACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp CAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAGCCCACCCAGAGGATGCTCTCTCGGAGTTaGTCCACCAGCTCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: QEQSPESLLWEEAEPTQRMLSRS*STSSFS
Trigger: GGAGAAGGAGCTGGTGGAGCAACTCCGAGAGAGCAT...CCTCTGGGTGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp CTTAGGCTGAAACCACGCCAGTGCAGTTCCTCCTCCGGGACCTGGCAGGGAGGTGACACCATCCATGAGTaGCGCCCCCAGGTCTTCATG +
Preference number: 4 (lower is better)
Translates to: LRLKPRQCSSSSGTWQGGDTIHE*RPQVFM
Trigger: CATGAAGACCTGGGGGCGGCACTCATGGATGGTGTC...ACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp ACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAGCCCAGCACGGCCAGCAAGCTaGTCTCTTTCTTGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: TGARSRVQSPCSGKRLSPARPAS*SLSCPE
Trigger: CTCAGGACAAGAAAGAGAGCAGCTTGCTGGCCGTGC...TGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp TTGGGGAGCAGGTACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGGCACGCATCCTCCTTaGTGGTCTGGTCTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: LGSRYRCQEQSPESLLWEGTHPP*WSGLLP
Trigger: TGGAAGAAGACCAGACCATCAAGGAGGATGCGTGCC...TTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp TTGGGGAGCAGGTACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGCACGGCCAGCAAGCTaGTCTCTTTCTTGTCCTGAG +
Preference number: 4 (lower is better)
Translates to: LGSRYRCQEQSPESLLWEARPAS*SLSCPE
Trigger: CTCAGGACAAGAAAGAGAGCAGCTTGCTGGCCGTGC...TTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp TTGGGGAGCAGGTACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAATGCTCTCTCGGAGTTaGTCCACCAGCTCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: LGSRYRCQEQSPESLLWEMLSRS*STSSFS
Trigger: GGAGAAGGAGCTGGTGGAGCAACTCCGAGAGAGCAT...TTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp GCAATGATGTGCTGCTACTCAGTTCTCCGCCAGCTCCCTGACCCGCTGTCAGGTCTCTCTTTCTTGTCCTaGGATGCCGCTGTCCCCCAA +
Preference number: 4 (lower is better)
Translates to: AMMCCYSVLRQLPDPLSGLSFLS*DAAVPQ
Trigger: TTGGGGGACAGCGGCATCTCAGGACAAGAAAGAGAG...ACCTGACAGCGGGTCAGGGAGCTGGCGGAGAACTGAGTAGCAGCACATCATTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp GCAGTGTCTGTCGGTGTGTGTGGACCACACTCATCCCTCCTGTGGTCTTTTGTAGGACGACACCATCCATaGGTGCCGCCCCCAGGTCTT +
Preference number: 4 (lower is better)
Translates to: AVSVGVCGPHSSLLWSFVGRHHP*VPPPGL
Trigger: AAGACCTGGGGGCGGCACTCATGGATGGTGTCGTCC...TACAAAAGACCACAGGAGGGATGAGTGTGGTCCACACACACCGACAGACACTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR GCA 90 bp ACCCGCTGTCAGGTAACACCTGCCCAACCTGAAACCTGCAGGCCAACTCTAAAACCGGTGCCTCCGTGGTaGTGGTGGTGTTGGTGGTGT +
Preference number: 4 (lower is better)
Translates to: TRCQVTPAQPETCRPTLKPVPPW*WWCWWC
Trigger: ACACCACCAACACCACCAGCACCACGGAGGCACCGG...TTTTAGAGTTGGCCTGCAGGTTTCAGGTTGGGCAGGTGTTACCTGACAGCGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp ACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAGCCCATTCTCCTCTCTCATCTaGTCCATCTTCCTCCGGATC +
Preference number: 4 (lower is better)
Translates to: TGARSRVQSPCSGKRLSPFSSLI*SIFLRI
Trigger: GATCCGGAGGAAGATGGAGCAGATGAGAGAGGAGAA...TGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp ACCCGCTGTCAGGTAACACCTGCCCAACCTGAAACCTGCAGGCCAACTCTAAAATGTTGGTGGTGCTGGTaGAGATGCGGGTGCAGGGCG +
Preference number: 4 (lower is better)
Translates to: TRCQVTPAQPETCRPTLKCWWCW*RCGCRA
Trigger: CGCCCTGCACCCGCATCTCCACCAGCACCACCAACA...TTTTAGAGTTGGCCTGCAGGTTTCAGGTTGGGCAGGTGTTACCTGACAGCGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp ACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAGCCCAAATGGGGCCTCTCTATaGTGGGGAGGTAAAGAGAGT +
Preference number: 4 (lower is better)
Translates to: TGARSRVQSPCSGKRLSPNGASL*WGGKES
Trigger: ACTCTCTTTACCTCCCCACCATAGAGAGGCCCCATT...TGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp CTTAGGCTGAAACCACGCCAGTGCAGTTCCTCCTCCGGGACCTGGCAGGGAGGTCTGTCTTCCACGTGTTaGTGTAAATGGGGCCTCTCT +
Preference number: 4 (lower is better)
Translates to: LRLKPRQCSSSSGTWQGGLSSTC*CKWGLS
Trigger: AGAGAGGCCCCATTTACACCAACACGTGGAAGACAG...ACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp CTTAGGCTGAAACCACGCCAGTGCAGTTCCTCCTCCGGGACCTGGCAGGGAGGTGTCTCCAGCTGCAACTaGCCATTGAGTGAAGGATCA +
Preference number: 4 (lower is better)
Translates to: LRLKPRQCSSSSGTWQGGVSSCN*PLSEGS
Trigger: TGATCCTTCACTCAATGGCCAGTTGCAGCTGGAGAC...ACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp ACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAGCCCAGTCTCCAGCTGCAACTaGCCATTGAGTGAAGGATCA +
Preference number: 4 (lower is better)
Translates to: TGARSRVQSPCSGKRLSPVSSCN*PLSEGS
Trigger: TGATCCTTCACTCAATGGCCAGTTGCAGCTGGAGAC...TGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR CAA 72 bp AGCTCACCCACTGACAGGATGGGGTGTGCTCCTTTCTaGGCCTGGCTCCCTGCTAGTCCTAATGTGCTTGCC +
Preference number: 4 (lower is better)
Translates to: SSPTDRMGCAPF*AWLPASPNVLA
Trigger: GGCAAGCACATTAGGACTAGCAGGGAGCCAGGCCAAGAAAGGAGCACACCCCATCCTGTCAGTGGGTGAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR CAA 72 bp TGGCTGCAATCCTCCTGGGTGCCCTTCACAAGCCCCTaGCAGCAAACAGGGAGGACTCCAACTAACCAGCCA +
Preference number: 4 (lower is better)
Translates to: WLQSSWVPFTSP*QQTGRTPTNQP
Trigger: TGGCTGGTTAGTTGGAGTCCTCCCTGTTTGCTGCAAGGGGCTTGTGAAGGGCACCCAGGAGGATTGCAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR TCA 90 bp TGCTGCTACTCAGTTCTCCGCCAGCTCCCTGACCCGCTGTCAGGTAACACCTGCTTGCGATTAAGACTTTaGGAGGCAGACCACACAGGC +
Preference number: 4 (lower is better)
Translates to: CCYSVLRQLPDPLSGNTCLRLRL*EADHTG
Trigger: GCCTGTGTGGTCTGCCTCTCAAAGTCTTAATCGCAA...GCAGGTGTTACCTGACAGCGGGTCAGGGAGCTGGCGGAGAACTGAGTAGCAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp TTGGGGAGCAGGTACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGCTGCAACTGGCCATTaGGTGAAGGATCAGGGAATT +
Preference number: 4 (lower is better)
Translates to: LGSRYRCQEQSPESLLWEAATGH*VKDQGI
Trigger: AATTCCCTGATCCTTCACTCAATGGCCAGTTGCAGC...TTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp CATAGTCCTATGAAGCCTTCCTTGAAGGAAGCTCACCCACTGACAGGATGGGGTACTCTGCCTGCAGGCTaGCCTGTACCTCCTCAGGGC +
Preference number: 4 (lower is better)
Translates to: HSPMKPSLKEAHPLTGWGTLPAG*PVPPQG
Trigger: GCCCTGAGGAGGTACAGGGCAGCCTGCAGGCAGAGT...ACCCCATCCTGTCAGTGGGTGAGCTTCCTTCAAGGAAGGCTTCATAGGACTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR GCA 90 bp CTCCTGTATGCTAACCCCACCCTGTTCCTGTCCTGGTTCTCCTTACCTCCTGCAGACACCATCCATGAGTaGCGCCCCCAGGTCTTCATG +
Preference number: 4 (lower is better)
Translates to: LLYANPTLFLSWFSLPPADTIHE*RPQVFM
Trigger: CATGAAGACCTGGGGGCGGCACTCATGGATGGTGTC...TGCAGGAGGTAAGGAGAACCAGGACAGGAACAGGGTGGGGTTAGCATACAGGAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CCA 90 bp AACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCCCGCCGGTGCCTCCGTaGTGCTGGTGGTGTTGGTGG +
Preference number: 4 (lower is better)
Translates to: NTSQKTALSVCHRRSTCFPPVPP*CWWCWW
Trigger: CCACCAACACCACCAGCACCACGGAGGCACCGGCGG...GAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp TGCTGCTACTCAGTTCTCCGCCAGCTCCCTGACCCGCTGTCAGGTAACACCTGCCTGTCTTCCACGTGTTaGTGTAAATGGGGCCTCTCT +
Preference number: 4 (lower is better)
Translates to: CCYSVLRQLPDPLSGNTCLSSTC*CKWGLS
Trigger: AGAGAGGCCCCATTTACACCAACACGTGGAAGACAG...GCAGGTGTTACCTGACAGCGGGTCAGGGAGCTGGCGGAGAACTGAGTAGCAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp CATAGTCCTATGAAGCCTTCCTTGAAGGAAGCTCACCCACTGACAGGATGGGGTGATCTCGGACGGACGTaGTTGGCCAGGTGGCAGAGG +
Preference number: 4 (lower is better)
Translates to: HSPMKPSLKEAHPLTGWGDLGRT*LARWQR
Trigger: CCTCTGCCACCTGGCCAACCACGTCCGTCCGAGATC...ACCCCATCCTGTCAGTGGGTGAGCTTCCTTCAAGGAAGGCTTCATAGGACTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR TCA 90 bp CCCACCCTGTTCCTGTCCTGGTTCTCCTTACCTCCTGCACAGAGCAGAGGCTCAGCTGCAACTGGCCATTaGGTGAAGGATCAGGGAATT +
Preference number: 4 (lower is better)
Translates to: PTLFLSWFSLPPAQSRGSAATGH*VKDQGI
Trigger: AATTCCCTGATCCTTCACTCAATGGCCAGTTGCAGC...TGAGCCTCTGCTCTGTGCAGGAGGTAAGGAGAACCAGGACAGGAACAGGGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR TCA 90 bp GCAGTGTCTGTCGGTGTGTGTGGACCACACTCATCCCTCCTGTGGTCTTTTGTAAGGGCACCAGGAACCTaGACGAGGCTTCAGGCCAAA +
Preference number: 4 (lower is better)
Translates to: AVSVGVCGPHSSLLWSFVRAPGT*TRLQAK
Trigger: TTTGGCCTGAAGCCTCGTTCAGGTTCCTGGTGCCCT...TACAAAAGACCACAGGAGGGATGAGTGTGGTCCACACACACCGACAGACACTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR GCA 90 bp TTGGGGAGCAGGTACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGGTCTTAGAAACACATaGCTGGAAAGCAACTGGGGT +
Preference number: 4 (lower is better)
Translates to: LGSRYRCQEQSPESLLWEGLRNT*LESNWG
Trigger: ACCCCAGTTGCTTTCCAGGCATGTGTTTCTAAGACC...TTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR GCA 90 bp ACCCGCTGTCAGGTAACACCTGCCCAACCTGAAACCTGCAGGCCAACTCTAAAAGTGAGGGGACATGGATaGTGGCGACAGATCTCGGAC +
Preference number: 4 (lower is better)
Translates to: TRCQVTPAQPETCRPTLKVRGHG*WRQISD
Trigger: GTCCGAGATCTGTCGCCAGCATCCATGTCCCCTCAC...TTTTAGAGTTGGCCTGCAGGTTTCAGGTTGGGCAGGTGTTACCTGACAGCGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp ACCCGCTGTCAGGTAACACCTGCCCAACCTGAAACCTGCAGGCCAACTCTAAAAACTCCTTCAGCTTCCTaGCGCTCAGGTTCAAGCCCC +
Preference number: 4 (lower is better)
Translates to: TRCQVTPAQPETCRPTLKTPSAS*RSGSSP
Trigger: GGGGCTTGAACCTGAGCGCCAGGAAGCTGAAGGAGT...TTTTAGAGTTGGCCTGCAGGTTTCAGGTTGGGCAGGTGTTACCTGACAGCGGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp ACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAGCCCACTTCTCCTGAGTCCATaGGGAACAGGTTCAAAATAC +
Preference number: 4 (lower is better)
Translates to: TGARSRVQSPCSGKRLSPLLLSP*GTGSKY
Trigger: GTATTTTGAACCTGTTCCCCATGGACTCAGGAGAAG...TGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp CTTAGGCTGAAACCACGCCAGTGCAGTTCCTCCTCCGGGACCTGGCAGGGAGGTACTCCATTAACTGTTTaGGCTGACCTATCTCTTCAG +
Preference number: 4 (lower is better)
Translates to: LRLKPRQCSSSSGTWQGGTPLTV*ADLSLQ
Trigger: CTGAAGAGATAGGTCAGCTCAAACAGTTAATGGAGT...ACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp ACCCGCTGTCAGGTAACACCTGCCCAACCTGAAACCTGCAGGCCAACTCTAAAAGGCACGCATCCTCCTTaGTGGTCTGGTCTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: TRCQVTPAQPETCRPTLKGTHPP*WSGLLP
Trigger: TGGAAGAAGACCAGACCATCAAGGAGGATGCGTGCC...TTTTAGAGTTGGCCTGCAGGTTTCAGGTTGGGCAGGTGTTACCTGACAGCGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp ACCCGCTGTCAGGTAACACCTGCCCAACCTGAAACCTGCAGGCCAACTCTAAAAAGGAGCACCTGCAGCTaGTTCATCTCCCTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: TRCQVTPAQPETCRPTLKRSTCS*FISLKQ
Trigger: CTGCTTCAGGGAGATGAAGCAGCTGCAGGTGCTCCT...TTTTAGAGTTGGCCTGCAGGTTTCAGGTTGGGCAGGTGTTACCTGACAGCGGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp CTTAGGCTGAAACCACGCCAGTGCAGTTCCTCCTCCGGGACCTGGCAGGGAGGTAACATTAGATCATTTTaGACCTCACGGTCTGGAGAC +
Preference number: 4 (lower is better)
Translates to: LRLKPRQCSSSSGTWQGGNIRSF*TSRSGD
Trigger: GTCTCCAGACCGTGAGGTGCAAAATGATCTAATGTT...ACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp ACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTTCGGACGGACGTGGTTaGCCAGGTGGCAGAGGACGA +
Preference number: 4 (lower is better)
Translates to: TPLRKQLSLSATEEARVSSDGRG*PGGRGR
Trigger: TCGTCCTCTGCCACCTGGCCAACCACGTCCGTCCGA...AGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp GAACCCTGTATTCACCATCAACACAATGCTGGGAGGAAGAGGCTCAGACAATCTGCCCCCAGGTCTTCATaGAGGGTCACCTTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: EPCIHHQHNAGRKRLRQSAPRSS*RVTFSL
Trigger: GAGGCTGAAGGTGACCCTTCATGAAGACCTGGGGGC...AGATTGTCTGAGCCTCTTCCTCCCAGCATTGTGTTGATGGTGAATACAGGGTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR TCA 90 bp CCCACCCTGTTCCTGTCCTGGTTCTCCTTACCTCCTGCACAGAGCAGAGGCTCAACAGTCTTTCGAATGTaGCGAAAATCCAACTGCAGG +
Preference number: 4 (lower is better)
Translates to: PTLFLSWFSLPPAQSRGSTVFRM*RKSNCR
Trigger: CCTGCAGTTGGATTTTCGTCACATTCGAAAGACTGT...TGAGCCTCTGCTCTGTGCAGGAGGTAAGGAGAACCAGGACAGGAACAGGGTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR GCA 90 bp ATAACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTCCGGTGCCTCCGTGGTaGTGGTGGTGTTGGTGGTGT +
Preference number: 4 (lower is better)
Translates to: ITPLRKQLSLSATEEARVPVPPW*WWCWWC
Trigger: ACACCACCAACACCACCAGCACCACGGAGGCACCGG...AACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp TTGGGGAGCAGGTACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAACCGGATCGTAAACTGTaGGTCTATAGATTCCAAGTT +
Preference number: 4 (lower is better)
Translates to: LGSRYRCQEQSPESLLWEPDRKL*VYRFQV
Trigger: AACTTGGAATCTATAGACCCACAGTTTACGATCCGG...TTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCCCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp TGCTGCTACTCAGTTCTCCGCCAGCTCCCTGACCCGCTGTCAGGTAACACCTGCCCGGATCGTAAACTGTaGGTCTATAGATTCCAAGTT +
Preference number: 4 (lower is better)
Translates to: CCYSVLRQLPDPLSGNTCPDRKL*VYRFQV
Trigger: AACTTGGAATCTATAGACCCACAGTTTACGATCCGG...GCAGGTGTTACCTGACAGCGGGTCAGGGAGCTGGCGGAGAACTGAGTAGCAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp CTCAGCTTCAGAACACCACCTAATAAAAAGGAAAAGCGGGCTAAGCAGATCCACTCGGACGGACGTGGTTaGCCAGGTGGCAGAGGACGA +
Preference number: 4 (lower is better)
Translates to: LSFRTPPNKKEKRAKQIHSDGRG*PGGRGR
Trigger: TCGTCCTCTGCCACCTGGCCAACCACGTCCGTCCGA...GTGGATCTGCTTAGCCCGCTTTTCCTTTTTATTAGGTGGTGTTCTGAAGCTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CCA 90 bp ATAACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTGATCTCGGACGGACGTaGTTGGCCAGGTGGCAGAGG +
Preference number: 4 (lower is better)
Translates to: ITPLRKQLSLSATEEARVDLGRT*LARWQR
Trigger: CCTCTGCCACCTGGCCAACCACGTCCGTCCGAGATC...AACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp TGCTGCTACTCAGTTCTCCGCCAGCTCCCTGACCCGCTGTCAGGTAACACCTGCGTTAAGAATTTCCAGTaGTACAAATTGGCACAGCTC +
Preference number: 4 (lower is better)
Translates to: CCYSVLRQLPDPLSGNTCVKNFQ*YKLAQL
Trigger: GAGCTGTGCCAATTTGTATCACTGGAAATTCTTAAC...GCAGGTGTTACCTGACAGCGGGTCAGGGAGCTGGCGGAGAACTGAGTAGCAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp CTTAGGCTGAAACCACGCCAGTGCAGTTCCTCCTCCGGGACCTGGCAGGGAGGTACTCTGATACAGTTGTaGTACAGGTTAAGAATTTCC +
Preference number: 4 (lower is better)
Translates to: LRLKPRQCSSSSGTWQGGTLIQL*YRLRIS
Trigger: GGAAATTCTTAACCTGTATCACAACTGTATCAGAGT...ACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp ACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAGCCCAACTCTGATACAGTTGTaGTACAGGTTAAGAATTTCC +
Preference number: 4 (lower is better)
Translates to: TGARSRVQSPCSGKRLSPTLIQL*YRLRIS
Trigger: GGAAATTCTTAACCTGTATCACAACTGTATCAGAGT...TGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp CCCTTCAAGTATGGAGGCATCTCAGAATCTCATCTCCCCTGTTCTCATGAATATGGACGACACCATCCATaGGTGCCGCCCCCAGGTCTT +
Preference number: 4 (lower is better)
Translates to: PFKYGGISESHLPCSHEYGRHHP*VPPPGL
Trigger: AAGACCTGGGGGCGGCACTCATGGATGGTGTCGTCC...ATATTCATGAGAACAGGGGAGATGAGATTCTGAGATGCCTCCATACTTGAAGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CCA 90 bp GCAAGGAGTTTGGTTTTGATAAAACAGACGCACGCGACTCACTGTGAAATGGTTTGTTGGTGGTGCTGGTaGAGATGCGGGTGCAGGGCG +
Preference number: 4 (lower is better)
Translates to: ARSLVLIKQTHATHCEMVCWWCW*RCGCRA
Trigger: CGCCCTGCACCCGCATCTCCACCAGCACCACCAACA...AACCATTTCACAGTGAGTCGCGTGCGTCTGTTTTATCAAAACCAAACTCCTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp ACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTACTCCTTCAGCTTCCTaGCGCTCAGGTTCAAGCCCC +
Preference number: 4 (lower is better)
Translates to: TPLRKQLSLSATEEARVSTPSAS*RSGSSP
Trigger: GGGGCTTGAACCTGAGCGCCAGGAAGCTGAAGGAGT...AGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp TGGCTGGAGCTTGCAGCAGGGCCTTCTCACATTGTAAAGAGGCTTCCAGAGACTGTCTCCAGCTGCAACTaGCCATTGAGTGAAGGATCA +
Preference number: 4 (lower is better)
Translates to: WLELAAGPSHIVKRLPETVSSCN*PLSEGS
Trigger: TGATCCTTCACTCAATGGCCAGTTGCAGCTGGAGAC...AGTCTCTGGAAGCCTCTTTACAATGTGAGAAGGCCCTGCTGCAAGCTCCAGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CCA 90 bp TTGGGGAGCAGGTACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAATCATTGGGAGAATACTaGCTTCCATTACTCTGTAAC +
Preference number: 4 (lower is better)
Translates to: LGSRYRCQEQSPESLLWESLGEY*LPLLCN
Trigger: GTTACAGAGTAATGGAAGCCAGTATTCTCCCAATGA...TTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp GCAAGGAGTTTGGTTTTGATAAAACAGACGCACGCGACTCACTGTGAAATGGTTTCGGACGGACGTGGTTaGCCAGGTGGCAGAGGACGA +
Preference number: 4 (lower is better)
Translates to: ARSLVLIKQTHATHCEMVSDGRG*PGGRGR
Trigger: TCGTCCTCTGCCACCTGGCCAACCACGTCCGTCCGA...AACCATTTCACAGTGAGTCGCGTGCGTCTGTTTTATCAAAACCAAACTCCTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp CCCTTCAAGTATGGAGGCATCTCAGAATCTCATCTCCCCTGTTCTCATGAATATGATCTCGGACGGACGTaGTTGGCCAGGTGGCAGAGG +
Preference number: 4 (lower is better)
Translates to: PFKYGGISESHLPCSHEYDLGRT*LARWQR
Trigger: CCTCTGCCACCTGGCCAACCACGTCCGTCCGAGATC...ATATTCATGAGAACAGGGGAGATGAGATTCTGAGATGCCTCCATACTTGAAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR TCA 90 bp ACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTTCCTCCATGTGCCAGTaGGCATCCTCTTCTATCCGC +
Preference number: 4 (lower is better)
Translates to: TPLRKQLSLSATEEARVSSSMCQ*ASSSIR
Trigger: GCGGATAGAAGAGGATGCTCACTGGCACATGGAGGA...AGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp CATAGTCCTATGAAGCCTTCCTTGAAGGAAGCTCACCCACTGACAGGATGGGGTGCTGCAACTGGCCATTaGGTGAAGGATCAGGGAATT +
Preference number: 4 (lower is better)
Translates to: HSPMKPSLKEAHPLTGWGAATGH*VKDQGI
Trigger: AATTCCCTGATCCTTCACTCAATGGCCAGTTGCAGC...ACCCCATCCTGTCAGTGGGTGAGCTTCCTTCAAGGAAGGCTTCATAGGACTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR GCA 90 bp CCTCTCATCTTTACACTGCTATGCCATCTGACAAAACAGGCATTTGTGCAGTACCGAGTGTCGAGCATCTaGACGGCCAGCAAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: PLIFTLLCHLTKQAFVQYRVSSI*TASKLL
Trigger: GAGCAGCTTGCTGGCCGTGCAGATGCTCGACACTCG...GTACTGCACAAATGCCTGTTTTGTCAGATGGCATAGCAGTGTAAAGATGAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR GCA 90 bp CATAGTCCTATGAAGCCTTCCTTGAAGGAAGCTCACCCACTGACAGGATGGGGTTTCTCCTCTCTCATCTaGTCCATCTTCCTCCGGATC +
Preference number: 4 (lower is better)
Translates to: HSPMKPSLKEAHPLTGWGFSSLI*SIFLRI
Trigger: GATCCGGAGGAAGATGGAGCAGATGAGAGAGGAGAA...ACCCCATCCTGTCAGTGGGTGAGCTTCCTTCAAGGAAGGCTTCATAGGACTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR CCA 90 bp ACTTATCATACTACCAGCCAGCCATGCACATTTCATTGCACATATAGACATAGTGCGGGCGCGAAAGCTTaGGGTTCGCTTCCCGGCGTC +
Preference number: 4 (lower is better)
Translates to: TYHTTSQPCTFHCTYRHSAGAKA*GSLPGV
Trigger: GACGCCGGGAAGCGAACCCCAAGCTTTCGCGCCCGC...ACTATGTCTATATGTGCAATGAAATGTGCATGGCTGGCTGGTAGTATGATAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR CCA 90 bp GCAAGGAGTTTGGTTTTGATAAAACAGACGCACGCGACTCACTGTGAAATGGTTTGGTGTTGGTGGTGCTaGTGGAGATGCGGGTGCAGG +
Preference number: 4 (lower is better)
Translates to: ARSLVLIKQTHATHCEMVWCWWC*WRCGCR
Trigger: CCTGCACCCGCATCTCCACCAGCACCACCAACACCA...AACCATTTCACAGTGAGTCGCGTGCGTCTGTTTTATCAAAACCAAACTCCTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp CCCACCCTGTTCCTGTCCTGGTTCTCCTTACCTCCTGCACAGAGCAGAGGCTCATCATTGGGAGAATACTaGCTTCCATTACTCTGTAAC +
Preference number: 4 (lower is better)
Translates to: PTLFLSWFSLPPAQSRGSSLGEY*LPLLCN
Trigger: GTTACAGAGTAATGGAAGCCAGTATTCTCCCAATGA...TGAGCCTCTGCTCTGTGCAGGAGGTAAGGAGAACCAGGACAGGAACAGGGTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CCA 90 bp ATAACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTGCCTGGAAAGCAACTaGGGTCGTCTTGGGGAGGAC +
Preference number: 4 (lower is better)
Translates to: ITPLRKQLSLSATEEARVCLESN*GRLGED
Trigger: GTCCTCCCCAAGACGACCCCAGTTGCTTTCCAGGCA...AACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR TCA 90 bp AACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCGGCAGGGCAGACAGCTaGTTTCGACTCAAGTTTAGG +
Preference number: 4 (lower is better)
Translates to: NTSQKTALSVCHRRSTCFGRADS*FRLKFR
Trigger: CCTAAACTTGAGTCGAAATCAGCTGTCTGCCCTGCC...GAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp CCTCTCATCTTTACACTGCTATGCCATCTGACAAAACAGGCATTTGTGCAGTACGCTGCTTCATCTCCCTaGAGCAGACGGGGATCACCA +
Preference number: 4 (lower is better)
Translates to: PLIFTLLCHLTKQAFVQYAASSP*SRRGSP
Trigger: TGGTGATCCCCGTCTGCTTCAGGGAGATGAAGCAGC...GTACTGCACAAATGCCTGTTTTGTCAGATGGCATAGCAGTGTAAAGATGAGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR TCA 90 bp AACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCCAGTCGTGCCCACTTTaGCCAGGCCTTTCTCTTCAA +
Preference number: 4 (lower is better)
Translates to: NTSQKTALSVCHRRSTCFQSCPL*PGLSLQ
Trigger: TTGAAGAGAAAGGCCTGGTCAAAGTGGGCACGACTG...GAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp ATAACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTAGGAGCACCTGCAGCTaGTTCATCTCCCTGAAGCAG +
Preference number: 4 (lower is better)
Translates to: ITPLRKQLSLSATEEARVRSTCS*FISLKQ
Trigger: CTGCTTCAGGGAGATGAAGCAGCTGCAGGTGCTCCT...AACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp TCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATGGACACCATCCATGAGTaGCGCCCCCAGGTCTTCATG +
Preference number: 4 (lower is better)
Translates to: SVYYIGGQEGCWNVGNWMDTIHE*RPQVFM
Trigger: CATGAAGACCTGGGGGCGGCACTCATGGATGGTGTC...CATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp GCAAGGAGTTTGGTTTTGATAAAACAGACGCACGCGACTCACTGTGAAATGGTTGTGAGGGGACATGGATaGTGGCGACAGATCTCGGAC +
Preference number: 4 (lower is better)
Translates to: ARSLVLIKQTHATHCEMVVRGHG*WRQISD
Trigger: GTCCGAGATCTGTCGCCAGCATCCATGTCCCCTCAC...AACCATTTCACAGTGAGTCGCGTGCGTCTGTTTTATCAAAACCAAACTCCTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp ATAACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTGGTGACATCCAACAGTaGCTGAACAGTCGTGCCCAC +
Preference number: 4 (lower is better)
Translates to: ITPLRKQLSLSATEEARVGDIQQ*LNSRAH
Trigger: GTGGGCACGACTGTTCAGGCACTGTTGGATGTCACC...AACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp GTCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATCGCAGAGACTTCAGCTaGCCTATCTGCTGGGGCAAG +
Preference number: 4 (lower is better)
Translates to: VSLLYWGTRGLLECRKLDRRDFS*PICWGK
Trigger: CTTGCCCCAGCAGATAGGCCAGCTGAAGTCTCTGCG...ATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp CTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTTGCTTAATTTTTCTTTCCGCTGCTTCATCTCCCTaGAGCAGACGGGGATCACCA +
Preference number: 4 (lower is better)
Translates to: LSLSATEEARVSCLIFLSAASSP*SRRGSP
Trigger: TGGTGATCCCCGTCTGCTTCAGGGAGATGAAGCAGC...GGAAAGAAAAATTAAGCAAGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp TCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATGCTCTCTTTCTTGTCCTaGGATGCCGCTGTCCCCCAA +
Preference number: 4 (lower is better)
Translates to: SVYYIGGQEGCWNVGNWMLSFLS*DAAVPQ
Trigger: TTGGGGGACAGCGGCATCTCAGGACAAGAAAGAGAG...CATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR CAA 72 bp TGGCTTCCTGACTTGAGCTCTTACGGCCCTTGTAGCTaGATGGTCAACTTCAACCTGCTCCATGTTTTCATC +
Preference number: 4 (lower is better)
Translates to: WLPDLSSYGPCS*MVNFNLLHVFI
Trigger: GATGAAAACATGGAGCAGGTTGAAGTTGACCATCAAGCTACAAGGGCCGTAAGAGCTCAAGTCAGGAAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR TCA 90 bp ACTTATCATACTACCAGCCAGCCATGCACATTTCATTGCACATATAGACATAGTGCCCCCAGGTCTTCATaGAGGGTCACCTTCAGCCTC +
Preference number: 4 (lower is better)
Translates to: TYHTTSQPCTFHCTYRHSAPRSS*RVTFSL
Trigger: GAGGCTGAAGGTGACCCTTCATGAAGACCTGGGGGC...ACTATGTCTATATGTGCAATGAAATGTGCATGGCTGGCTGGTAGTATGATAAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR TCA 90 bp GCAAGGAGTTTGGTTTTGATAAAACAGACGCACGCGACTCACTGTGAAATGGTTCAGTCGTGCCCACTTTaGCCAGGCCTTTCTCTTCAA +
Preference number: 4 (lower is better)
Translates to: ARSLVLIKQTHATHCEMVQSCPL*PGLSLQ
Trigger: TTGAAGAGAAAGGCCTGGTCAAAGTGGGCACGACTG...AACCATTTCACAGTGAGTCGCGTGCGTCTGTTTTATCAAAACCAAACTCCTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp CATAGTCCTATGAAGCCTTCCTTGAAGGAAGCTCACCCACTGACAGGATGGGGTAACATTAGATCATTTTaGACCTCACGGTCTGGAGAC +
Preference number: 4 (lower is better)
Translates to: HSPMKPSLKEAHPLTGWGNIRSF*TSRSGD
Trigger: GTCTCCAGACCGTGAGGTGCAAAATGATCTAATGTT...ACCCCATCCTGTCAGTGGGTGAGCTTCCTTCAAGGAAGGCTTCATAGGACTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR GCA 90 bp ACTTATCATACTACCAGCCAGCCATGCACATTTCATTGCACATATAGACATAGTTCTTGGGGAGGACTCTaGCTGCAGGCTGCCCTGTAC +
Preference number: 4 (lower is better)
Translates to: TYHTTSQPCTFHCTYRHSSWGGL*LQAALY
Trigger: GTACAGGGCAGCCTGCAGGCAGAGTCCTCCCCAAGA...ACTATGTCTATATGTGCAATGAAATGTGCATGGCTGGCTGGTAGTATGATAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR TCA 90 bp CATAGTCCTATGAAGCCTTCCTTGAAGGAAGCTCACCCACTGACAGGATGGGGTGTTAAGAATTTCCAGTaGTACAAATTGGCACAGCTC +
Preference number: 4 (lower is better)
Translates to: HSPMKPSLKEAHPLTGWGVKNFQ*YKLAQL
Trigger: GAGCTGTGCCAATTTGTATCACTGGAAATTCTTAAC...ACCCCATCCTGTCAGTGGGTGAGCTTCCTTCAAGGAAGGCTTCATAGGACTATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR TCA 90 bp TCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATGTTGCGATTAAGACTTTaGGAGGCAGACCACACAGGC +
Preference number: 4 (lower is better)
Translates to: SVYYIGGQEGCWNVGNWMLRLRL*EADHTG
Trigger: GCCTGTGTGGTCTGCCTCTCAAAGTCTTAATCGCAA...CATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp AGGGATTTTATTGTTACAGAAAAGTACAAGATAGCACCAAAGACGACTCATAACGCGGAGGGCAGAAGTTaGCTGTGGGGGTTTCTCCCC +
Preference number: 4 (lower is better)
Translates to: RDFIVTEKYKIAPKTTHNAEGRS*LWGFLP
Trigger: GGGGAGAAACCCCCACAGTCAACTTCTGCCCTCCGC...GTTATGAGTCGTCTTTGGTGCTATCTTGTACTTTTCTGTAACAATAAAATCCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CCA 90 bp ACTTATCATACTACCAGCCAGCCATGCACATTTCATTGCACATATAGACATAGTCGCAGAGACTTCAGCTaGCCTATCTGCTGGGGCAAG +
Preference number: 4 (lower is better)
Translates to: TYHTTSQPCTFHCTYRHSRRDFS*PICWGK
Trigger: CTTGCCCCAGCAGATAGGCCAGCTGAAGTCTCTGCG...ACTATGTCTATATGTGCAATGAAATGTGCATGGCTGGCTGGTAGTATGATAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR CCA 90 bp TCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATGAATGGGGCCTCTCTATaGTGGGGAGGTAAAGAGAGT +
Preference number: 4 (lower is better)
Translates to: SVYYIGGQEGCWNVGNWMNGASL*WGGKES
Trigger: ACTCTCTTTACCTCCCCACCATAGAGAGGCCCCATT...CATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp AACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCCCAGCTCCCGGTCTTTaGATGAATTTAGTAGTTCCT +
Preference number: 4 (lower is better)
Translates to: NTSQKTALSVCHRRSTCFPAPGL*MNLVVP
Trigger: AGGAACTACTAAATTCATCCAAAGACCGGGAGCTGG...GAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp ACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTCTTCTCCTGAGTCCATaGGGAACAGGTTCAAAATAC +
Preference number: 4 (lower is better)
Translates to: TPLRKQLSLSATEEARVSLLLSP*GTGSKY
Trigger: GTATTTTGAACCTGTTCCCCATGGACTCAGGAGAAG...AGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp ATAACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTTAGAAACACATGCCTaGAAAGCAACTGGGGTCGTC +
Preference number: 4 (lower is better)
Translates to: ITPLRKQLSLSATEEARVLETHA*KATGVV
Trigger: GACGACCCCAGTTGCTTTCCAGGCATGTGTTTCTAA...AACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR GCA 90 bp ACTTATCATACTACCAGCCAGCCATGCACATTTCATTGCACATATAGACATAGTTCAAGCAGGAGCACCTaGAGCTGCTTCATCTCCCTG +
Preference number: 4 (lower is better)
Translates to: TYHTTSQPCTFHCTYRHSSSRST*SCFISL
Trigger: CAGGGAGATGAAGCAGCTGCAGGTGCTCCTGCTTGA...ACTATGTCTATATGTGCAATGAAATGTGCATGGCTGGCTGGTAGTATGATAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR CCA 90 bp TGTTGGCTTCCTGACTTGAGCTCTTACGGCCCTTGTAGCTTGATGGTCAACTTCTCATTGGGAGAATACTaGCTTCCATTACTCTGTAAC +
Preference number: 4 (lower is better)
Translates to: CWLPDLSSYGPCSLMVNFSLGEY*LPLLCN
Trigger: GTTACAGAGTAATGGAAGCCAGTATTCTCCCAATGA...GAAGTTGACCATCAAGCTACAAGGGCCGTAAGAGCTCAAGTCAGGAAGCCAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
3UTR CAA 72 bp AGGAACGTTCATATCTCAGCAAACTGGACATTTATCTaGACGGCATTAACACCACCACCTTCCCAACACGAG +
Preference number: 4 (lower is better)
Translates to: RNVHISANWTFI*TALTPPPSQHE
Trigger: CTCGTGTTGGGAAGGTGGTGGTGTTAATGCCGTCAAGATAAATGTCCAGTTTGCTGAGATATGAACGTTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR GCA 90 bp GTTCCAGGATCCATAGACTTATTTGAAACTGAAGAGTCAAATGCATCACATTCTATGCTCTCTCGGAGTTaGTCCACCAGCTCCTTCTCC +
Preference number: 4 (lower is better)
Translates to: VPGSIDLFETEESNASHSMLSRS*STSSFS
Trigger: GGAGAAGGAGCTGGTGGAGCAACTCCGAGAGAGCAT...AGAATGTGATGCATTTGACTCTTCAGTTTCAAATAAGTCTATGGATCCTGGAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR GCA 90 bp AGGGATTTTATTGTTACAGAAAAGTACAAGATAGCACCAAAGACGACTCATAACGTGAGGGGACATGGATaGTGGCGACAGATCTCGGAC +
Preference number: 4 (lower is better)
Translates to: RDFIVTEKYKIAPKTTHNVRGHG*WRQISD
Trigger: GTCCGAGATCTGTCGCCAGCATCCATGTCCCCTCAC...GTTATGAGTCGTCTTTGGTGCTATCTTGTACTTTTCTGTAACAATAAAATCCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CCA 90 bp GCAAGGAGTTTGGTTTTGATAAAACAGACGCACGCGACTCACTGTGAAATGGTTTCCTCCTTGATGGTCTaGTCTTCTTCCACGATGTTT +
Preference number: 4 (lower is better)
Translates to: ARSLVLIKQTHATHCEMVSSLMV*SSSTMF
Trigger: AAACATCGTGGAAGAAGACCAGACCATCAAGGAGGA...AACCATTTCACAGTGAGTCGCGTGCGTCTGTTTTATCAAAACCAAACTCCTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp GTCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATTCCTCCTTGATGGTCTaGTCTTCTTCCACGATGTTT +
Preference number: 4 (lower is better)
Translates to: VSLLYWGTRGLLECRKLDSSLMV*SSSTMF
Trigger: AAACATCGTGGAAGAAGACCAGACCATCAAGGAGGA...ATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp TCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATGCCAGCTCCCGGTCTTTaGATGAATTTAGTAGTTCCT +
Preference number: 4 (lower is better)
Translates to: SVYYIGGQEGCWNVGNWMPAPGL*MNLVVP
Trigger: AGGAACTACTAAATTCATCCAAAGACCGGGAGCTGG...CATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp GCAAGGAGTTTGGTTTTGATAAAACAGACGCACGCGACTCACTGTGAAATGGTTATTAACTGTTTGAGCTaGCCTATCTCTTCAGGCAGT +
Preference number: 4 (lower is better)
Translates to: ARSLVLIKQTHATHCEMVINCLS*PISSGS
Trigger: ACTGCCTGAAGAGATAGGTCAGCTCAAACAGTTAAT...AACCATTTCACAGTGAGTCGCGTGCGTCTGTTTTATCAAAACCAAACTCCTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR TCA 90 bp CCTCTCATCTTTACACTGCTATGCCATCTGACAAAACAGGCATTTGTGCAGTACACTCCATTAACTGTTTaGGCTGACCTATCTCTTCAG +
Preference number: 4 (lower is better)
Translates to: PLIFTLLCHLTKQAFVQYTPLTV*ADLSLQ
Trigger: CTGAAGAGATAGGTCAGCTCAAACAGTTAATGGAGT...GTACTGCACAAATGCCTGTTTTGTCAGATGGCATAGCAGTGTAAAGATGAGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR GCA 90 bp TGCAGAAATATAAATAAGAACGATGTTCCACAAACCAAAAGGTGGATAACACCTGGTGACATCCAACAGTaGCTGAACAGTCGTGCCCAC +
Preference number: 4 (lower is better)
Translates to: CRNINKNDVPQTKRWITPGDIQQ*LNSRAH
Trigger: GTGGGCACGACTGTTCAGGCACTGTTGGATGTCACC...AGGTGTTATCCACCTTTTGGTTTGTGGAACATCGTTCTTATTTATATTTCTGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp CTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTTGCTTAATTTTTCTTTCCTCCAGTGATACAAATTaGCACAGCTCCATTGGCACT +
Preference number: 4 (lower is better)
Translates to: LSLSATEEARVSCLIFLSSSDTN*HSSIGT
Trigger: AGTGCCAATGGAGCTGTGCCAATTTGTATCACTGGA...GGAAAGAAAAATTAAGCAAGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
3UTR CAA 72 bp AAACGAGTATGTCTACATTTTGGCATCTCTTGTTCTTaGAACACCAGCAGTTGTACGTCCATGTTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: KRVCLHFGISCS*NTSSCTSMLAS
Trigger: GGAAGCCAACATGGACGTACAACTGCTGGTGTTCAAAGAACAAGAGATGCCAAAATGTAGACATACTCGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR GCA 90 bp ACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTTGTCTTAATCTGGCATaGTTGTATGCTCAAATACTT +
Preference number: 4 (lower is better)
Translates to: TPLRKQLSLSATEEARVSCLNLA*LYAQIL
Trigger: AAGTATTTGAGCATACAAGCATGCCAGATTAAGACA...AGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR GCA 90 bp GTTCCAGGATCCATAGACTTATTTGAAACTGAAGAGTCAAATGCATCACATTCTTTCTCCTCTCTCATCTaGTCCATCTTCCTCCGGATC +
Preference number: 4 (lower is better)
Translates to: VPGSIDLFETEESNASHSFSSLI*SIFLRI
Trigger: GATCCGGAGGAAGATGGAGCAGATGAGAGAGGAGAA...AGAATGTGATGCATTTGACTCTTCAGTTTCAAATAAGTCTATGGATCCTGGAAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CCA 90 bp GTCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATTCACTTGTCTTAATCTaGCATGCTTGTATGCTCAAA +
Preference number: 4 (lower is better)
Translates to: VSLLYWGTRGLLECRKLDSLVLI*HACMLK
Trigger: TTTGAGCATACAAGCATGCCAGATTAAGACAAGTGA...ATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp GTTCCAGGATCCATAGACTTATTTGAAACTGAAGAGTCAAATGCATCACATTCTCTTCTCCTGAGTCCATaGGGAACAGGTTCAAAATAC +
Preference number: 4 (lower is better)
Translates to: VPGSIDLFETEESNASHSLLLSP*GTGSKY
Trigger: GTATTTTGAACCTGTTCCCCATGGACTCAGGAGAAG...AGAATGTGATGCATTTGACTCTTCAGTTTCAAATAAGTCTATGGATCCTGGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR GCA 90 bp CTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTTGCTTAATTTTTCTTTCCTGTCTTAATCTGGCATaGTTGTATGCTCAAATACTT +
Preference number: 4 (lower is better)
Translates to: LSLSATEEARVSCLIFLSCLNLA*LYAQIL
Trigger: AAGTATTTGAGCATACAAGCATGCCAGATTAAGACA...GGAAAGAAAAATTAAGCAAGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp TGCAGAAATATAAATAAGAACGATGTTCCACAAACCAAAAGGTGGATAACACCTTCCAGTGATACAAATTaGCACAGCTCCATTGGCACT +
Preference number: 4 (lower is better)
Translates to: CRNINKNDVPQTKRWITPSSDTN*HSSIGT
Trigger: AGTGCCAATGGAGCTGTGCCAATTTGTATCACTGGA...AGGTGTTATCCACCTTTTGGTTTGTGGAACATCGTTCTTATTTATATTTCTGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CCA 90 bp TCTACATTTTGGCATCTCTTGTTCTTTGAACACCAGCAGTTGTACGTCCATGTTTCACTTGTCTTAATCTaGCATGCTTGTATGCTCAAA +
Preference number: 4 (lower is better)
Translates to: STFWHLLFFEHQQLYVHVSLVLI*HACMLK
Trigger: TTTGAGCATACAAGCATGCCAGATTAAGACAAGTGA...AACATGGACGTACAACTGCTGGTGTTCAAAGAACAAGAGATGCCAAAATGTAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR CCA 90 bp TTTCTCAGCTTCAGAACACCACCTAATAAAAAGGAAAAGCGGGCTAAGCAGATCACTATAAGGAGAACATaGATAAGACAGAAGCCTATA +
Preference number: 4 (lower is better)
Translates to: FLSFRTPPNKKEKRAKQITIRRT*IRQKPI
Trigger: TATAGGCTTCTGTCTTATCCATGTTCTCCTTATAGT...GATCTGCTTAGCCCGCTTTTCCTTTTTATTAGGTGGTGTTCTGAAGCTGAGAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR GCA 90 bp AGGGATTTTATTGTTACAGAAAAGTACAAGATAGCACCAAAGACGACTCATAACAACATTAGATCATTTTaGACCTCACGGTCTGGAGAC +
Preference number: 4 (lower is better)
Translates to: RDFIVTEKYKIAPKTTHNNIRSF*TSRSGD
Trigger: GTCTCCAGACCGTGAGGTGCAAAATGATCTAATGTT...GTTATGAGTCGTCTTTGGTGCTATCTTGTACTTTTCTGTAACAATAAAATCCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CCA 90 bp GTACAAAGGGATTTTATTGTTACAGAAAAGTACAAGATAGCACCAAAGACGACTCCGGATCGTAAACTGTaGGTCTATAGATTCCAAGTT +
Preference number: 4 (lower is better)
Translates to: VQRDFIVTEKYKIAPKTTPDRKL*VYRFQV
Trigger: AACTTGGAATCTATAGACCCACAGTTTACGATCCGG...AGTCGTCTTTGGTGCTATCTTGTACTTTTCTGTAACAATAAAATCCCTTTGTAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
3UTR CAA 72 bp ATAATAAAAACGAGTATGTCTACATTTTGGCATCTCTaGTTCTTTGAACACCAGCAGTTGTACGTCCATGTT +
Preference number: 4 (lower is better)
Translates to: IIKTSMSTFWHL*FFEHQQLYVHV
Trigger: AACATGGACGTACAACTGCTGGTGTTCAAAGAACAAGAGATGCCAAAATGTAGACATACTCGTTTTTATTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS TCA 90 bp CCGCCTCCTCCAGCGCGCGCTCCAAACCACGGTTCAAGGGCAGGTTaGAGCCGGTGCCGCCGGTGCCTCCGTGGTGCTGGTGGTGTTGGT +
Preference number: 5 (lower is better)
Translates to: PPPPARAPNHGSRAG*SRCRRCLRGAGGVG
Trigger: ACCAACACCACCAGCACCACGGAGGCACCGGCGGCACCGGCTTCAACCTGCCCTTGAACCGTGGTTTGGAGCGCGCGCTGGAGGAGGCGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 90 bp CCGGTGCCGCCGGTGCCTCCGTGGTGCTGGTGGTGTTGGTGGTGTTaGTGGTGCTGGTGGAGATGCGGGTGCAGGGCGGTTACCGAGAGA +
Preference number: 5 (lower is better)
Translates to: PVPPVPPWCWWCWWC*WCWWRCGCRAVTER
Trigger: TCTCTCGGTAACCGCCCTGCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCACCGGCGGCACCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 90 bp TTGAAGCCGGTGCCGCCGGTGCCTCCGTGGTGCTGGTGGTGTTGGTaGTGTTGGTGGTGCTGGTGGAGATGCGGGTGCAGGGCGGTTACC +
Preference number: 5 (lower is better)
Translates to: LKPVPPVPPWCWWCW*CWWCWWRCGCRAVT
Trigger: GGTAACCGCCCTGCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCACCGGCGGCACCGGCTTCAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 90 bp AGGTTGAAGCCGGTGCCGCCGGTGCCTCCGTGGTGCTGGTGGTGTTaGTGGTGTTGGTGGTGCTGGTGGAGATGCGGGTGCAGGGCGGTT +
Preference number: 5 (lower is better)
Translates to: RLKPVPPVPPWCWWC*WCWWCWWRCGCRAV
Trigger: AACCGCCCTGCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCACCGGCGGCACCGGCTTCAACCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 90 bp AAGGGCAGGTTGAAGCCGGTGCCGCCGGTGCCTCCGTGGTGCTGGTaGTGTTGGTGGTGTTGGTGGTGCTGGTGGAGATGCGGGTGCAGG +
Preference number: 5 (lower is better)
Translates to: KGRLKPVPPVPPWCW*CWWCWWCWWRCGCR
Trigger: CCTGCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCACCGGCGGCACCGGCTTCAACCTGCCCTT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp CAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAGCCCACCCAGAGGAGCGGGCGCGAAAGCTaGGGGTTCGCTTCCCGGCGT +
Preference number: 5 (lower is better)
Translates to: QEQSPESLLWEEAEPTQRSGRES*GFASRR
Trigger: ACGCCGGGAAGCGAACCCCAAGCTTTCGCGCCCGCT...CCTCTGGGTGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 90 bp TTCAAGGGCAGGTTGAAGCCGGTGCCGCCGGTGCCTCCGTGGTGCTaGTGGTGTTGGTGGTGTTGGTGGTGCTGGTGGAGATGCGGGTGC +
Preference number: 5 (lower is better)
Translates to: FKGRLKPVPPVPPWC*WCWWCWWCWWRCGC
Trigger: GCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCACCGGCGGCACCGGCTTCAACCTGCCCTTGAA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 90 bp GCCGGTGAGGGGACATGGATGCTGGCGACAGATCTCGGACGGACGTaGTTGGCCAGGTGGCAGAGGACGACACCATCCATGAGTGCCGCC +
Preference number: 5 (lower is better)
Translates to: AGEGTWMLATDLGRT*LARWQRTTPSMSAA
Trigger: GGCGGCACTCATGGATGGTGTCGTCCTCTGCCACCTGGCCAACCACGTCCGTCCGAGATCTGTCGCCAGCATCCATGTCCCCTCACCGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp CTTAGGCTGAAACCACGCCAGTGCAGTTCCTCCTCCGGGACCTGGCAGGGAGGTAGCGGGCGCGAAAGCTaGGGGTTCGCTTCCCGGCGT +
Preference number: 5 (lower is better)
Translates to: LRLKPRQCSSSSGTWQGGSGRES*GFASRR
Trigger: ACGCCGGGAAGCGAACCCCAAGCTTTCGCGCCCGCT...ACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp ACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAGCCCACGGTTCAAGGGCAGGTaGAAGCCGGTGCCGCCGGTG +
Preference number: 5 (lower is better)
Translates to: TGARSRVQSPCSGKRLSPRFKGR*KPVPPV
Trigger: CACCGGCGGCACCGGCTTCAACCTGCCCTTGAACCG...TGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp CAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAGAGGCTGAGCCCACCCAGAGGGGGGACTGCAGAGGGTaGTTCTCAAGCAGGAGCACC +
Preference number: 5 (lower is better)
Translates to: QEQSPESLLWEEAEPTQRGDCRG*FSSRST
Trigger: GGTGCTCCTGCTTGAGAACAACCCTCTGCAGTCCCC...CCTCTGGGTGGGCTCAGCCTCTTCCCAGAGCAGGGACTCTGGACTCTGCTCCTG
63% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS GCA 90 bp ACGGACGTGGTTGGCCAGGTGGCAGAGGACGACACCATCCATGAGTaGCGCCCCCAGGTCTTCATGAAGGGTCACCTTCAGCCTCATCTC +
Preference number: 5 (lower is better)
Translates to: TDVVGQVAEDDTIHE*RPQVFMKGHLQPHL
Trigger: GAGATGAGGCTGAAGGTGACCCTTCATGAAGACCTGGGGGCGGCACTCATGGATGGTGTCGTCCTCTGCCACCTGGCCAACCACGTCCGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS CCA 90 bp CTGCACTTGGCCATGCTGAGTTTAGGAACAGCCGGTGAGGGGACATaGATGCTGGCGACAGATCTCGGACGGACGTGGTTGGCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: LHLAMLSLGTAGEGT*MLATDLGRTWLARW
Trigger: CCACCTGGCCAACCACGTCCGTCCGAGATCTGTCGCCAGCATCCATGTCCCCTCACCGGCTGTTCCTAAACTCAGCATGGCCAAGTGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS TCA 90 bp CTCTGCCTGCAGGCTGCCCTGTACCTCCTCAGGGCACCAGGAACCTaGACGAGGCTTCAGGCCAAACGGAGCTGTGATGTTTGCAGTAGG +
Preference number: 5 (lower is better)
Translates to: LCLQAALYLLRAPGT*TRLQAKRSCDVCSR
Trigger: CCTACTGCAAACATCACAGCTCCGTTTGGCCTGAAGCCTCGTTCAGGTTCCTGGTGCCCTGAGGAGGTACAGGGCAGCCTGCAGGCAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS TCA 90 bp TGGCAGAGGACGACACCATCCATGAGTGCCGCCCCCAGGTCTTCATaGAGGGTCACCTTCAGCCTCATCTCGATGCTCTCTCGGAGTTGC +
Preference number: 5 (lower is better)
Translates to: WQRTTPSMSAAPRSS*RVTFSLISMLSRSC
Trigger: GCAACTCCGAGAGAGCATCGAGATGAGGCTGAAGGTGACCCTTCATGAAGACCTGGGGGCGGCACTCATGGATGGTGTCGTCCTCTGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp CTTAGGCTGAAACCACGCCAGTGCAGTTCCTCCTCCGGGACCTGGCAGGGAGGTACGTTCCTCCTGCACTaGGCCATGCTGAGTTTAGGA +
Preference number: 5 (lower is better)
Translates to: LRLKPRQCSSSSGTWQGGTFLLH*AMLSLG
Trigger: TCCTAAACTCAGCATGGCCAAGTGCAGGAGGAACGT...ACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 90 bp GATAAGACAGAAGCCTATAAGGTCCCTGGAGCGGAGGGCAGAAGTTaGCTGTGGGGGTTTCTCCCCGAGGGCCAGCAGAGTGTCAACAGT +
Preference number: 5 (lower is better)
Translates to: DKTEAYKVPGAEGRS*LWGFLPEGQQSVNS
Trigger: ACTGTTGACACTCTGCTGGCCCTCGGGGAGAAACCCCCACAGTCAACTTCTGCCCTCCGCTCCAGGGACCTTATAGGCTTCTGTCTTATC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS GCA 90 bp TGTCATACGGAGAGCACAGGTCGGCCTCGGGAACGCCAAGTTTCCTaGACGCTTCCAAGAAGTTTTCCACGTTCCTCCTGCACTTGGCCA +
Preference number: 5 (lower is better)
Translates to: CHTESTGRPRERQVS*TLPRSFPRSSCTWP
Trigger: TGGCCAAGTGCAGGAGGAACGTGGAAAACTTCTTGGAAGCGTGCAGGAAACTTGGCGTTCCCGAGGCCGACCTGTGCTCTCCGTATGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS CCA 90 bp TCCAAGTTTCTCTGCGGTCTTAGAAACACATGCCTGGAAAGCAACTaGGGTCGTCTTGGGGAGGACTCTGCCTGCAGGCTGCCCTGTACC +
Preference number: 5 (lower is better)
Translates to: SKFLCGLRNTCLESN*GRLGEDSACRLPCT
Trigger: GGTACAGGGCAGCCTGCAGGCAGAGTCCTCCCCAAGACGACCCCAGTTGCTTTCCAGGCATGTGTTTCTAAGACCGCAGAGAAACTTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR CAA 90 bp TGCTGCTACTCAGTTCTCCGCCAGCTCCCTGACCCGCTGTCAGGTAACACCTGCGGCAGTGATCCGAGCTaGTTGTTGCTTGCGATTAAG +
Preference number: 5 (lower is better)
Translates to: CCYSVLRQLPDPLSGNTCGSDPS*LLLAIK
Trigger: CTTAATCGCAAGCAACAACAAGCTCGGATCACTGCC...GCAGGTGTTACCTGACAGCGGGTCAGGGAGCTGGCGGAGAACTGAGTAGCAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp TTGGGGAGCAGGTACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAAACCGCTTATCTCCATaGTCACTTCCAACCCCTGAG +
Preference number: 5 (lower is better)
Translates to: LGSRYRCQEQSPESLLWENRLSP*SLPTPE
Trigger: CTCAGGGGTTGGAAGTGACAATGGAGATAAGCGGTT...TTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp ACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTCTCGGACGGACGTGGTaGGCCAGGTGGCAGAGGACG +
Preference number: 5 (lower is better)
Translates to: TPLRKQLSLSATEEARVSLGRTW*ARWQRT
Trigger: CGTCCTCTGCCACCTGGCCAACCACGTCCGTCCGAG...AGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp CTTAGGCTGAAACCACGCCAGTGCAGTTCCTCCTCCGGGACCTGGCAGGGAGGTGATCCGAGCTTGTTGTaGCTTGCGATTAAGACTTTG +
Preference number: 5 (lower is better)
Translates to: LRLKPRQCSSSSGTWQGGDPSLL*LAIKTL
Trigger: CAAAGTCTTAATCGCAAGCAACAACAAGCTCGGATC...ACCTCCCTGCCAGGTCCCGGAGGAGGAACTGCACTGGCGTGGTTTCAGCCTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 90 bp GAGGGTTGTTCTCAAGCAGGAGCACCTGCAGCTGCTTCATCTCCCTaGAGCAGACGGGGATCACCAGCACCTTGTTGCAGGAAAAGTCAA +
Preference number: 5 (lower is better)
Translates to: EGCSQAGAPAAASSP*SRRGSPAPCCRKSQ
Trigger: TTGACTTTTCCTGCAACAAGGTGCTGGTGATCCCCGTCTGCTTCAGGGAGATGAAGCAGCTGCAGGTGCTCCTGCTTGAGAACAACCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 90 bp ATGGCACGCATCCTCCTTGATGGTCTGGTCTTCTTCCACGATGTTTaGCATGGGCGCATTGAGGCTAACCGTGTCCTCATCAGAGGGCTC +
Preference number: 5 (lower is better)
Translates to: MARILLDGLVFFHDV*HGRIEANRVLIRGL
Trigger: GAGCCCTCTGATGAGGACACGGTTAGCCTCAATGCGCCCATGTCAAACATCGTGGAAGAAGACCAGACCATCAAGGAGGATGCGTGCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS GCA 90 bp TTTCTTCGGACATTGAGTTCCCGCAGAGACTTCAGCTGGCCTATCTaGTGGGGCAAGGCCGTGATCTCGTTGCAACTCACATCCAACTCC +
Preference number: 5 (lower is better)
Translates to: FLRTLSSRRDFSWPI*WGKAVISLQLTSNS
Trigger: GGAGTTGGATGTGAGTTGCAACGAGATCACGGCCTTGCCCCAGCAGATAGGCCAGCTGAAGTCTCTGCGGGAACTCAATGTCCGAAGAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS GCA 90 bp TGTGATGAGGCAGGCAGAGCTTTTCCTCGGGAACGCCAAGTTTCCTaGACGCTTCCAAGAAGTTTTCCACGTTCCTCCTGCACTTGGCCA +
Preference number: 5 (lower is better)
Translates to: CDEAGRAFPRERQVS*TLPRSFPRSSCTWP
Trigger: TGGCCAAGTGCAGGAGGAACGTGGAAAACTTCTTGGAAGCGTGCAGGAAACTTGGCGTTCCCGAGGAAAAGCTCTGCCTGCCTCATCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 90 bp CTTCGGACATTGAGTTCCCGCAGAGACTTCAGCTGGCCTATCTGCTaGGGCAAGGCCGTGATCTCGTTGCAACTCACATCCAACTCCATT +
Preference number: 5 (lower is better)
Translates to: LRTLSSRRDFSWPIC*GKAVISLQLTSNSI
Trigger: AATGGAGTTGGATGTGAGTTGCAACGAGATCACGGCCTTGCCCCAGCAGATAGGCCAGCTGAAGTCTCTGCGGGAACTCAATGTCCGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 90 bp CCTTTAGTTGGGGTGAGCCGATGGCACGCATCCTCCTTGATGGTCTaGTCTTCTTCCACGATGTTTGACATGGGCGCATTGAGGCTAACC +
Preference number: 5 (lower is better)
Translates to: PLVGVSRWHASSLMV*SSSTMFDMGALRLT
Trigger: GGTTAGCCTCAATGCGCCCATGTCAAACATCGTGGAAGAAGACCAGACCATCAAGGAGGATGCGTGCCATCGGCTCACCCCAACTAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 90 bp GCTGTCCCCCAAAATGGAAGGCTTCGGCTGAAATTCTCCTTTAGTTaGGGTGAGCCGATGGCACGCATCCTCCTTGATGGTCTGGTCTTC +
Preference number: 5 (lower is better)
Translates to: AVPQNGRLRLKFSFS*GEPMARILLDGLVF
Trigger: GAAGACCAGACCATCAAGGAGGATGCGTGCCATCGGCTCACCCCAACTAAAGGAGAATTTCAGCCGAAGCCTTCCATTTTGGGGGACAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp GTCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATTTCAAGCCCCCAGAGTaGGCCGCCTCCTCCAGCGCG +
Preference number: 5 (lower is better)
Translates to: VSLLYWGTRGLLECRKLDFKPPE*AASSSA
Trigger: CGCGCTGGAGGAGGCGGCCAACTCTGGGGGCTTGAA...ATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp TTGGGGAGCAGGTACAGGTGCCAGGAGCAGAGTCCAGAGTCCCTGCTCTGGGAAAGTGATCCGAGCTTGTaGTTGCTTGCGATTAAGACT +
Preference number: 5 (lower is better)
Translates to: LGSRYRCQEQSPESLLWESDPSL*LLAIKT
Trigger: AGTCTTAATCGCAAGCAACAACAAGCTCGGATCACT...TTCCCAGAGCAGGGACTCTGGACTCTGCTCCTGGCACCTGTACCTGCTCCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 90 bp GGTTTCTCCCCGAGGGCCAGCAGAGTGTCAACAGTCTTTCGAATGTaGCGAAAATCCAACTGCAGGATGTCATACGGAGAGCACAGGTCG +
Preference number: 5 (lower is better)
Translates to: GFSPRASRVSTVFRM*RKSNCRMSYGEHRS
Trigger: CGACCTGTGCTCTCCGTATGACATCCTGCAGTTGGATTTTCGTCACATTCGAAAGACTGTTGACACTCTGCTGGCCCTCGGGGAGAAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CAA 90 bp TGTTGGCTTCCTGACTTGAGCTCTTACGGCCCTTGTAGCTTGATGGTCAACTTCGATGCTCTCTCGGAGTaGCTCCACCAGCTCCTTCTC +
Preference number: 5 (lower is better)
Translates to: CWLPDLSSYGPCSLMVNFDALSE*LHQLLL
Trigger: GAGAAGGAGCTGGTGGAGCAACTCCGAGAGAGCATC...GAAGTTGACCATCAAGCTACAAGGGCCGTAAGAGCTCAAGTCAGGAAGCCAACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR CAA 90 bp TTTCTCAGCTTCAGAACACCACCTAATAAAAAGGAAAAGCGGGCTAAGCAGATCCTCGGACGGACGTGGTaGGCCAGGTGGCAGAGGACG +
Preference number: 5 (lower is better)
Translates to: FLSFRTPPNKKEKRAKQILGRTW*ARWQRT
Trigger: CGTCCTCTGCCACCTGGCCAACCACGTCCGTCCGAG...GATCTGCTTAGCCCGCTTTTCCTTTTTATTAGGTGGTGTTCTGAAGCTGAGAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CAA 90 bp CTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTTGCTTAATTTTTCTTTCCCTCGGACGGACGTGGTaGGCCAGGTGGCAGAGGACG +
Preference number: 5 (lower is better)
Translates to: LSLSATEEARVSCLIFLSLGRTW*ARWQRT
Trigger: CGTCCTCTGCCACCTGGCCAACCACGTCCGTCCGAG...GGAAAGAAAAATTAAGCAAGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS GCA 90 bp AATATGTGTACTTTTCCTTTCGTGCAAATCTGCGCCGGAGGGGACTaGAGAGGGTTGTTCTCAAGCAGGAGCACCTGCAGCTGCTTCATC +
Preference number: 5 (lower is better)
Translates to: NMCTFPFVQICAGGD*RGLFSSRSTCSCFI
Trigger: GATGAAGCAGCTGCAGGTGCTCCTGCTTGAGAACAACCCTCTGCAGTCCCCTCCGGCGCAGATTTGCACGAAAGGAAAAGTACACATATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS GCA 90 bp TGTGGGTCTATAGATTCCAAGTTTCTCTGCGGTCTTAGAAACACATaGCTGGAAAGCAACTGGGGTCGTCTTGGGGAGGACTCTGCCTGC +
Preference number: 5 (lower is better)
Translates to: CGSIDSKFLCGLRNT*LESNWGRLGEDSAC
Trigger: GCAGGCAGAGTCCTCCCCAAGACGACCCCAGTTGCTTTCCAGGCATGTGTTTCTAAGACCGCAGAGAAACTTGGAATCTATAGACCCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS TCA 90 bp ACTTTGAGAGGCAGACCACACAGGCAGGCGGGCAGGGCAGACAGCTaGTTTCGACTCAAGTTTAGGTGGGTCAACATCTGCAAATTAACA +
Preference number: 5 (lower is better)
Translates to: TLRGRPHRQAGRADS*FRLKFRWVNICKLT
Trigger: TGTTAATTTGCAGATGTTGACCCACCTAAACTTGAGTCGAAATCAGCTGTCTGCCCTGCCCGCCTGCCTGTGTGGTCTGCCTCTCAAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 90 bp AGGCTTCAGGCCAAACGGAGCTGTGATGTTTGCAGTAGGAGACACTaGAGGGGAGTTCTCTCGTATCTCATTGGGAGAATACTGGCTTCC +
Preference number: 5 (lower is better)
Translates to: RLQAKRSCDVCSRRH*RGVLSYLIGRILAS
Trigger: GGAAGCCAGTATTCTCCCAATGAGATACGAGAGAACTCCCCTTCAGTGTCTCCTACTGCAAACATCACAGCTCCGTTTGGCCTGAAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp GTCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATGGGGACTGCAGAGGGTaGTTCTCAAGCAGGAGCACC +
Preference number: 5 (lower is better)
Translates to: VSLLYWGTRGLLECRKLDGDCRG*FSSRST
Trigger: GGTGCTCCTGCTTGAGAACAACCCTCTGCAGTCCCC...ATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp TGTTGGCTTCCTGACTTGAGCTCTTACGGCCCTTGTAGCTTGATGGTCAACTTCACAGTCGTGCCCACTTaGACCAGGCCTTTCTCTTCA +
Preference number: 5 (lower is better)
Translates to: CWLPDLSSYGPCSLMVNFTVVPT*TRPFSS
Trigger: TGAAGAGAAAGGCCTGGTCAAAGTGGGCACGACTGT...GAAGTTGACCATCAAGCTACAAGGGCCGTAAGAGCTCAAGTCAGGAAGCCAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS CCA 90 bp CCTCTCTCAGCTGCTCAATCATCGCTATATCCAGCTCCCGGTCTTTaGATGAATTTAGTAGTTCCTCCATGTGCCAGTGAGCATCCTCTT +
Preference number: 5 (lower is better)
Translates to: PLSAAQSSLYPAPGL*MNLVVPPCASEHPL
Trigger: AAGAGGATGCTCACTGGCACATGGAGGAACTACTAAATTCATCCAAAGACCGGGAGCTGGATATAGCGATGATTGAGCAGCTGAGAGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp TGCAGAAATATAAATAAGAACGATGTTCCACAAACCAAAAGGTGGATAACACCTCGGTTCAAGGGCAGGTaGAAGCCGGTGCCGCCGGTG +
Preference number: 5 (lower is better)
Translates to: CRNINKNDVPQTKRWITPRFKGR*KPVPPV
Trigger: CACCGGCGGCACCGGCTTCAACCTGCCCTTGAACCG...AGGTGTTATCCACCTTTTGGTTTGTGGAACATCGTTCTTATTTATATTTCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp CTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTTCTTGCTTAATTTTTCTTTCCGATGCTCTCTCGGAGTaGCTCCACCAGCTCCTTCTC +
Preference number: 5 (lower is better)
Translates to: LSLSATEEARVSCLIFLSDALSE*LHQLLL
Trigger: GAGAAGGAGCTGGTGGAGCAACTCCGAGAGAGCATC...GGAAAGAAAAATTAAGCAAGAAACACGTGCTTCTTCTGTGGCAGACAGAGAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp AACCCTGTATTCACCATCAACACAATGCTGGGAGGAAGAGGCTCAGACAATCTAACGTTCCTCCTGCACTaGGCCATGCTGAGTTTAGGA +
Preference number: 5 (lower is better)
Translates to: NPVFTINTMLGGRGSDNLTFLLH*AMLSLG
Trigger: TCCTAAACTCAGCATGGCCAAGTGCAGGAGGAACGT...TAGATTGTCTGAGCCTCTTCCTCCCAGCATTGTGTTGATGGTGAATACAGGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CAA 90 bp ATAACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTACAGTCGTGCCCACTTaGACCAGGCCTTTCTCTTCA +
Preference number: 5 (lower is better)
Translates to: ITPLRKQLSLSATEEARVTVVPT*TRPFSS
Trigger: TGAAGAGAAAGGCCTGGTCAAAGTGGGCACGACTGT...AACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 90 bp GTGATCTCGTTGCAACTCACATCCAACTCCATTAACTGTTTGAGCTaGCCTATCTCTTCAGGCAGTGATCCGAGCTTGTTGTTGCTTGCG +
Preference number: 5 (lower is better)
Translates to: VISLQLTSNSINCLS*PISSGSDPSLLLLA
Trigger: CGCAAGCAACAACAAGCTCGGATCACTGCCTGAAGAGATAGGTCAGCTCAAACAGTTAATGGAGTTGGATGTGAGTTGCAACGAGATCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS GCA 90 bp TTCCTCCGGATCGTAAACTGTGGGTCTATAGATTCCAAGTTTCTCTaGGGTCTTAGAAACACATGCCTGGAAAGCAACTGGGGTCGTCTT +
Preference number: 5 (lower is better)
Translates to: FLRIVNCGSIDSKFL*GLRNTCLESNWGRL
Trigger: AAGACGACCCCAGTTGCTTTCCAGGCATGTGTTTCTAAGACCGCAGAGAAACTTGGAATCTATAGACCCACAGTTTACGATCCGGAGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR CAA 90 bp ATAACACCTCTCAGAAAACAGCTCTCTCTGTCTGCCACAGAAGAAGCACGTGTTAGCTGCAACTGGCCATaGAGTGAAGGATCAGGGAAT +
Preference number: 5 (lower is better)
Translates to: ITPLRKQLSLSATEEARVSCNWP*SEGSGN
Trigger: ATTCCCTGATCCTTCACTCAATGGCCAGTTGCAGCT...AACACGTGCTTCTTCTGTGGCAGACAGAGAGAGCTGTTTTCTGAGAGGTGTTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp GTCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATACGTTCCTCCTGCACTaGGCCATGCTGAGTTTAGGA +
Preference number: 5 (lower is better)
Translates to: VSLLYWGTRGLLECRKLDTFLLH*AMLSLG
Trigger: TCCTAAACTCAGCATGGCCAAGTGCAGGAGGAACGT...ATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 90 bp AAAATACTTCTCTCTATGATATCTGCGCTTAGACCGTTGGGATCCTaGAGCAGCTCTGCCTCTCTCAGCTGCTCAATCATCGCTATATCC +
Preference number: 5 (lower is better)
Translates to: KILLSMISALRPLGS*SSSASLSCSIIAIS
Trigger: GGATATAGCGATGATTGAGCAGCTGAGAGAGGCAGAGCTGCTTCAGGATCCCAACGGTCTAAGCGCAGATATCATAGAGAGAAGTATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp GTCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATGGCAGTGATCCGAGCTaGTTGTTGCTTGCGATTAAG +
Preference number: 5 (lower is better)
Translates to: VSLLYWGTRGLLECRKLDGSDPS*LLLAIK
Trigger: CTTAATCGCAAGCAACAACAAGCTCGGATCACTGCC...ATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp GTCAGTTTATTATATTGGGGGACAAGAGGGCTGCTGGAATGTAGGAAACTGGATAACCGCTTATCTCCATaGTCACTTCCAACCCCTGAG +
Preference number: 5 (lower is better)
Translates to: VSLLYWGTRGLLECRKLDNRLSP*SLPTPE
Trigger: CTCAGGGGTTGGAAGTGACAATGGAGATAAGCGGTT...ATCCAGTTTCCTACATTCCAGCAGCCCTCTTGTCCCCCAATATAATAAACTGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp CAACACAATGCTGGGAGGAAGAGGCTCAGACAATCTAACATCTTATGGCATAAAAGCTGCAACTGGCCATaGAGTGAAGGATCAGGGAAT +
Preference number: 5 (lower is better)
Translates to: QHNAGRKRLRQSNILWHKSCNWP*SEGSGN
Trigger: ATTCCCTGATCCTTCACTCAATGGCCAGTTGCAGCT...TTTATGCCATAAGATGTTAGATTGTCTGAGCCTCTTCCTCCCAGCATTGTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CAA 90 bp GTTCCAGGATCCATAGACTTATTTGAAACTGAAGAGTCAAATGCATCACATTCTGATGCTCTCTCGGAGTaGCTCCACCAGCTCCTTCTC +
Preference number: 5 (lower is better)
Translates to: VPGSIDLFETEESNASHSDALSE*LHQLLL
Trigger: GAGAAGGAGCTGGTGGAGCAACTCCGAGAGAGCATC...AGAATGTGATGCATTTGACTCTTCAGTTTCAAATAAGTCTATGGATCCTGGAAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CAA 90 bp GTACAAAGGGATTTTATTGTTACAGAAAAGTACAAGATAGCACCAAAGACGACTAGCGGAGGGCAGAAGTaGACTGTGGGGGTTTCTCCC +
Preference number: 5 (lower is better)
Translates to: VQRDFIVTEKYKIAPKTTSGGQK*TVGVSP
Trigger: GGGAGAAACCCCCACAGTCAACTTCTGCCCTCCGCT...AGTCGTCTTTGGTGCTATCTTGTACTTTTCTGTAACAATAAAATCCCTTTGTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS-3UTR CAA 90 bp GCAAGGAGTTTGGTTTTGATAAAACAGACGCACGCGACTCACTGTGAAATGGTTGATCCGAGCTTGTTGTaGCTTGCGATTAAGACTTTG +
Preference number: 5 (lower is better)
Translates to: ARSLVLIKQTHATHCEMVDPSLL*LAIKTL
Trigger: CAAAGTCTTAATCGCAAGCAACAACAAGCTCGGATC...AACCATTTCACAGTGAGTCGCGTGCGTCTGTTTTATCAAAACCAAACTCCTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 90 bp AGGAATGACTCTGATACAGTTGTGATACAGGTTAAGAATTTCCAGTaGTACAAATTGGCACAGCTCCATTGGCACTTCCACCAGTCTGTT +
Preference number: 5 (lower is better)
Translates to: RNDSDTVVIQVKNFQ*YKLAQLHWHFHQSV
Trigger: AACAGACTGGTGGAAGTGCCAATGGAGCTGTGCCAATTTGTATCACTGGAAATTCTTAACCTGTATCACAACTGTATCAGAGTCATTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS-3UTR CAA 90 bp ACTTATCATACTACCAGCCAGCCATGCACATTTCATTGCACATATAGACATAGTAGTGATCCGAGCTTGTaGTTGCTTGCGATTAAGACT +
Preference number: 5 (lower is better)
Translates to: TYHTTSQPCTFHCTYRHSSDPSL*LLAIKT
Trigger: AGTCTTAATCGCAAGCAACAACAAGCTCGGATCACT...ACTATGTCTATATGTGCAATGAAATGTGCATGGCTGGCTGGTAGTATGATAAGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS-3UTR CAA 90 bp TGCAGAAATATAAATAAGAACGATGTTCCACAAACCAAAAGGTGGATAACACCTAGCTGCAACTGGCCATaGAGTGAAGGATCAGGGAAT +
Preference number: 5 (lower is better)
Translates to: CRNINKNDVPQTKRWITPSCNWP*SEGSGN
Trigger: ATTCCCTGATCCTTCACTCAATGGCCAGTTGCAGCT...AGGTGTTATCCACCTTTTGGTTTGTGGAACATCGTTCTTATTTATATTTCTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 90 bp ATCTGCAAATTAACAATGGCCTCAGGAATGACTCTGATACAGTTGTaGTACAGGTTAAGAATTTCCAGTGATACAAATTGGCACAGCTCC +
Preference number: 5 (lower is better)
Translates to: ICKLTMASGMTLIQL*YRLRISSDTNWHSS
Trigger: GGAGCTGTGCCAATTTGTATCACTGGAAATTCTTAACCTGTATCACAACTGTATCAGAGTCATTCCTGAGGCCATTGTTAATTTGCAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CAA 90 bp GCCGCCTCCTCCAGCGCGCGCTCCAAACCACGGTTCAAGGGCAGGTaGAAGCCGGTGCCGCCGGTGCCTCCGTGGTGCTGGTGGTGTTGG +
Preference number: 6 (lower is better)
Translates to: AASSSARSKPRFKGR*KPVPPVPPWCWWCW
Trigger: CCAACACCACCAGCACCACGGAGGCACCGGCGGCACCGGCTTCAACCTGCCCTTGAACCGTGGTTTGGAGCGCGCGCTGGAGGAGGCGGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CAA 90 bp GCCGGTGCCGCCGGTGCCTCCGTGGTGCTGGTGGTGTTGGTGGTGTaGGTGGTGCTGGTGGAGATGCGGGTGCAGGGCGGTTACCGAGAG +
Preference number: 6 (lower is better)
Translates to: AGAAGASVVLVVLVV*VVLVEMRVQGGYRE
Trigger: CTCTCGGTAACCGCCCTGCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCACCGGCGGCACCGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 72 bp CCAGCGCGCGCTCCAAACCACGGTTCAAGGGCAGGTTaGAGCCGGTGCCGCCGGTGCCTCCGTGGTGCTGGT +
Preference number: 6 (lower is better)
Translates to: PARAPNHGSRAG*SRCRRCLRGAG
Trigger: ACCAGCACCACGGAGGCACCGGCGGCACCGGCTTCAACCTGCCCTTGAACCGTGGTTTGGAGCGCGCGCTGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 72 bp CCGGTGCCGCCGGTGCCTCCGTGGTGCTGGTGGTGTTaGTGGTGTTGGTGGTGCTGGTGGAGATGCGGGTGC +
Preference number: 6 (lower is better)
Translates to: PVPPVPPWCWWC*WCWWCWWRCGC
Trigger: GCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCACCGGCGGCACCGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CAA 72 bp GCCGGTGCCGCCGGTGCCTCCGTGGTGCTGGTGGTGTaGGTGGTGTTGGTGGTGCTGGTGGAGATGCGGGTG +
Preference number: 6 (lower is better)
Translates to: AGAAGASVVLVV*VVLVVLVEMRV
Trigger: CACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCACCGGCGGCACCGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CAA 72 bp TCCAGCGCGCGCTCCAAACCACGGTTCAAGGGCAGGTaGAAGCCGGTGCCGCCGGTGCCTCCGTGGTGCTGG +
Preference number: 6 (lower is better)
Translates to: SSARSKPRFKGR*KPVPPVPPWCW
Trigger: CCAGCACCACGGAGGCACCGGCGGCACCGGCTTCAACCTGCCCTTGAACCGTGGTTTGGAGCGCGCGCTGGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CAA 90 bp CAGGTTGAAGCCGGTGCCGCCGGTGCCTCCGTGGTGCTGGTGGTGTaGGTGGTGTTGGTGGTGCTGGTGGAGATGCGGGTGCAGGGCGGT +
Preference number: 6 (lower is better)
Translates to: QVEAGAAGASVVLVV*VVLVVLVEMRVQGG
Trigger: ACCGCCCTGCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCACCGGCGGCACCGGCTTCAACCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 72 bp GTGCCGCCGGTGCCTCCGTGGTGCTGGTGGTGTTGGTaGTGTTGGTGGTGCTGGTGGAGATGCGGGTGCAGG +
Preference number: 6 (lower is better)
Translates to: VPPVPPWCWWCW*CWWCWWRCGCR
Trigger: CCTGCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCACCGGCGGCAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 72 bp CCGGTGCCTCCGTGGTGCTGGTGGTGTTGGTGGTGTTaGTGGTGCTGGTGGAGATGCGGGTGCAGGGCGGTT +
Preference number: 6 (lower is better)
Translates to: PVPPWCWWCWWC*WCWWRCGCRAV
Trigger: AACCGCCCTGCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCACCGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 72 bp CTGGCGACAGATCTCGGACGGACGTGGTTGGCCAGGTaGCAGAGGACGACACCATCCATGAGTGCCGCCCCC +
Preference number: 6 (lower is better)
Translates to: LATDLGRTWLAR*QRTTPSMSAAP
Trigger: GGGGGCGGCACTCATGGATGGTGTCGTCCTCTGCCACCTGGCCAACCACGTCCGTCCGAGATCTGTCGCCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS CAA 90 bp GGTGAGGGGACATGGATGCTGGCGACAGATCTCGGACGGACGTGGTaGGCCAGGTGGCAGAGGACGACACCATCCATGAGTGCCGCCCCC +
Preference number: 6 (lower is better)
Translates to: GEGTWMLATDLGRTW*ARWQRTTPSMSAAP
Trigger: GGGGGCGGCACTCATGGATGGTGTCGTCCTCTGCCACCTGGCCAACCACGTCCGTCCGAGATCTGTCGCCAGCATCCATGTCCCCTCACC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS GCA 72 bp CCTCCGTGGTGCTGGTGGTGTTGGTGGTGTTGGTGGTaGTGGTGGAGATGCGGGTGCAGGGCGGTTACCGAG +
Preference number: 6 (lower is better)
Translates to: PPWCWWCWWCWW*WWRCGCRAVTE
Trigger: CTCGGTAACCGCCCTGCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 72 bp GTGCCTCCGTGGTGCTGGTGGTGTTGGTGGTGTTGGTaGTGCTGGTGGAGATGCGGGTGCAGGGCGGTTACC +
Preference number: 6 (lower is better)
Translates to: VPPWCWWCWWCW*CWWRCGCRAVT
Trigger: GGTAACCGCCCTGCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGGAGGCAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS GCA 72 bp ACTGGGGTCGTCTTGGGGAGGACTCTGCCTGCAGGCTaGCCTGTACCTCCTCAGGGCACCAGGAACCTGAAC +
Preference number: 6 (lower is better)
Translates to: TGVVLGRTLPAG*PVPPQGTRNLN
Trigger: GTTCAGGTTCCTGGTGCCCTGAGGAGGTACAGGGCAGCCTGCAGGCAGAGTCCTCCCCAAGACGACCCCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS GCA 72 bp CCTGGAAAGCAACTGGGGTCGTCTTGGGGAGGACTCTaGCTGCAGGCTGCCCTGTACCTCCTCAGGGCACCA +
Preference number: 6 (lower is better)
Translates to: PGKQLGSSWGGL*LQAALYLLRAP
Trigger: TGGTGCCCTGAGGAGGTACAGGGCAGCCTGCAGGCAGAGTCCTCCCCAAGACGACCCCAGTTGCTTTCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS CCA 72 bp TGGTGCTGGTGGTGTTGGTGGTGTTGGTGGTGCTGGTaGAGATGCGGGTGCAGGGCGGTTACCGAGAGAGCG +
Preference number: 6 (lower is better)
Translates to: WCWWCWWCWWCW*RCGCRAVTERA
Trigger: CGCTCTCTCGGTAACCGCCCTGCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 72 bp CCGTGGTGCTGGTGGTGTTGGTGGTGTTGGTGGTGCTaGTGGAGATGCGGGTGCAGGGCGGTTACCGAGAGA +
Preference number: 6 (lower is better)
Translates to: PWCWWCWWCWWC*WRCGCRAVTER
Trigger: TCTCTCGGTAACCGCCCTGCACCCGCATCTCCACCAGCACCACCAACACCACCAACACCACCAGCACCACGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS GCA 72 bp GAAAGCAACTGGGGTCGTCTTGGGGAGGACTCTGCCTaGAGGCTGCCCTGTACCTCCTCAGGGCACCAGGAA +
Preference number: 6 (lower is better)
Translates to: ESNWGRLGEDSA*RLPCTSSGHQE
Trigger: TTCCTGGTGCCCTGAGGAGGTACAGGGCAGCCTGCAGGCAGAGTCCTCCCCAAGACGACCCCAGTTGCTTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS CCA 72 bp GGGACATGGATGCTGGCGACAGATCTCGGACGGACGTaGTTGGCCAGGTGGCAGAGGACGACACCATCCATG +
Preference number: 6 (lower is better)
Translates to: GTWMLATDLGRT*LARWQRTTPSM
Trigger: CATGGATGGTGTCGTCCTCTGCCACCTGGCCAACCACGTCCGTCCGAGATCTGTCGCCAGCATCCATGTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS TCA 72 bp GAAGCCTATAAGGTCCCTGGAGCGGAGGGCAGAAGTTaGCTGTGGGGGTTTCTCCCCGAGGGCCAGCAGAGT +
Preference number: 6 (lower is better)
Translates to: EAYKVPGAEGRS*LWGFLPEGQQS
Trigger: ACTCTGCTGGCCCTCGGGGAGAAACCCCCACAGTCAACTTCTGCCCTCCGCTCCAGGGACCTTATAGGCTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS GCA 72 bp AGTCCCGAGTGTCGAGCATCTGCACGGCCAGCAAGCTaGTCTCTTTCTTGTCCTGAGATGCCGCTGTCCCCC +
Preference number: 6 (lower is better)
Translates to: SPECRASARPAS*SLSCPEMPLSP
Trigger: GGGGGACAGCGGCATCTCAGGACAAGAAAGAGAGCAGCTTGCTGGCCGTGCAGATGCTCGACACTCGGGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS GCA 72 bp GTTGGCCAGGTGGCAGAGGACGACACCATCCATGAGTaGCGCCCCCAGGTCTTCATGAAGGGTCACCTTCAG +
Preference number: 6 (lower is better)
Translates to: VGQVAEDDTIHE*RPQVFMKGHLQ
Trigger: CTGAAGGTGACCCTTCATGAAGACCTGGGGGCGGCACTCATGGATGGTGTCGTCCTCTGCCACCTGGCCAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS CAA 90 bp TCTGCGGTCTTAGAAACACATGCCTGGAAAGCAACTGGGGTCGTCTaGGGGAGGACTCTGCCTGCAGGCTGCCCTGTACCTCCTCAGGGC +
Preference number: 6 (lower is better)
Translates to: SAVLETHAWKATGVV*GRTLPAGCPVPPQG
Trigger: GCCCTGAGGAGGTACAGGGCAGCCTGCAGGCAGAGTCCTCCCCAAGACGACCCCAGTTGCTTTCCAGGCATGTGTTTCTAAGACCGCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS TCA 72 bp CCTGCACTTGGCCATGCTGAGTTTAGGAACAGCCGGTaGGGGGACATGGATGCTGGCGACAGATCTCGGACG +
Preference number: 6 (lower is better)
Translates to: PALGHAEFRNSR*GDMDAGDRSRT
Trigger: CGTCCGAGATCTGTCGCCAGCATCCATGTCCCCTCACCGGCTGTTCCTAAACTCAGCATGGCCAAGTGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS CAA 72 bp ACATGGATGCTGGCGACAGATCTCGGACGGACGTGGTaGGCCAGGTGGCAGAGGACGACACCATCCATGAGT +
Preference number: 6 (lower is better)
Translates to: TWMLATDLGRTW*ARWQRTTPSMS
Trigger: ACTCATGGATGGTGTCGTCCTCTGCCACCTGGCCAACCACGTCCGTCCGAGATCTGTCGCCAGCATCCATGT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS GCA 72 bp GAGAGCACAGGTCGGCCTCGGGAACGCCAAGTTTCCTaGACGCTTCCAAGAAGTTTTCCACGTTCCTCCTGC +
Preference number: 6 (lower is better)
Translates to: ESTGRPRERQVS*TLPRSFPRSSC
Trigger: GCAGGAGGAACGTGGAAAACTTCTTGGAAGCGTGCAGGAAACTTGGCGTTCCCGAGGCCGACCTGTGCTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226799.2
CDS CCA 72 bp CTCTGCGGTCTTAGAAACACATGCCTGGAAAGCAACTaGGGTCGTCTTGGGGAGGACTCTGCCTGCAGGCTG +
Preference number: 6 (lower is better)
Translates to: LCGLRNTCLESN*GRLGEDSACRL
Trigger: CAGCCTGCAGGCAGAGTCCTCCCCAAGACGACCCCAGTTGCTTTCCAGGCATGTGTTTCTAAGACCGCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS CCA 72 bp TTGAGTTCCCGCAGAGACTTCAGCTGGCCTATCTGCTaGGGCAAGGCCGTGATCTCGTTGCAACTCACATCC +
Preference number: 6 (lower is better)
Translates to: LSSRRDFSWPIC*GKAVISLQLTS
Trigger: GGATGTGAGTTGCAACGAGATCACGGCCTTGCCCCAGCAGATAGGCCAGCTGAAGTCTCTGCGGGAACTCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 72 bp GGGGTGAGCCGATGGCACGCATCCTCCTTGATGGTCTaGTCTTCTTCCACGATGTTTGACATGGGCGCATTG +
Preference number: 6 (lower is better)
Translates to: GVSRWHASSLMV*SSSTMFDMGAL
Trigger: CAATGCGCCCATGTCAAACATCGTGGAAGAAGACCAGACCATCAAGGAGGATGCGTGCCATCGGCTCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CAA 72 bp TTAGAAACACATGCCTGGAAAGCAACTGGGGTCGTCTaGGGGAGGACTCTGCCTGCAGGCTGCCCTGTACCT +
Preference number: 6 (lower is better)
Translates to: LETHAWKATGVV*GRTLPAGCPVP
Trigger: AGGTACAGGGCAGCCTGCAGGCAGAGTCCTCCCCAAGACGACCCCAGTTGCTTTCCAGGCATGTGTTTCTAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS GCA 72 bp ACATTGAGTTCCCGCAGAGACTTCAGCTGGCCTATCTaGTGGGGCAAGGCCGTGATCTCGTTGCAACTCACA +
Preference number: 6 (lower is better)
Translates to: TLSSRRDFSWPI*WGKAVISLQLT
Trigger: TGTGAGTTGCAACGAGATCACGGCCTTGCCCCAGCAGATAGGCCAGCTGAAGTCTCTGCGGGAACTCAATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS GCA 72 bp GCAGGCAGAGCTTTTCCTCGGGAACGCCAAGTTTCCTaGACGCTTCCAAGAAGTTTTCCACGTTCCTCCTGC +
Preference number: 6 (lower is better)
Translates to: AGRAFPRERQVS*TLPRSFPRSSC
Trigger: GCAGGAGGAACGTGGAAAACTTCTTGGAAGCGTGCAGGAAACTTGGCGTTCCCGAGGAAAAGCTCTGCCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CAA 72 bp GTCTGGTCTTCTTCCACGATGTTTGACATGGGCGCATaGAGGCTAACCGTGTCCTCATCAGAGGGCTCGGTG +
Preference number: 6 (lower is better)
Translates to: VWSSSTMFDMGA*RLTVSSSEGSV
Trigger: CACCGAGCCCTCTGATGAGGACACGGTTAGCCTCAATGCGCCCATGTCAAACATCGTGGAAGAAGACCAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CAA 90 bp GTGTCCTCATCAGAGGGCTCGGTGGCAGATAACCGCTTATCTCCATaGTCACTTCCAACCCCTGAGTCGGAGTCCTTCTTACTGTCTTCC +
Preference number: 6 (lower is better)
Translates to: VSSSEGSVADNRLSP*SLPTPESESFLLSS
Trigger: GGAAGACAGTAAGAAGGACTCCGACTCAGGGGTTGGAAGTGACAATGGAGATAAGCGGTTATCTGCCACCGAGCCCTCTGATGAGGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CAA 90 bp TCCTTGATGGTCTGGTCTTCTTCCACGATGTTTGACATGGGCGCATaGAGGCTAACCGTGTCCTCATCAGAGGGCTCGGTGGCAGATAAC +
Preference number: 6 (lower is better)
Translates to: SLMVWSSSTMFDMGA*RLTVSSSEGSVADN
Trigger: GTTATCTGCCACCGAGCCCTCTGATGAGGACACGGTTAGCCTCAATGCGCCCATGTCAAACATCGTGGAAGAAGACCAGACCATCAAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CAA 72 bp TCAGAGGGCTCGGTGGCAGATAACCGCTTATCTCCATaGTCACTTCCAACCCCTGAGTCGGAGTCCTTCTTA +
Preference number: 6 (lower is better)
Translates to: SEGSVADNRLSP*SLPTPESESFL
Trigger: TAAGAAGGACTCCGACTCAGGGGTTGGAAGTGACAATGGAGATAAGCGGTTATCTGCCACCGAGCCCTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CAA 72 bp CCTTTAGTTGGGGTGAGCCGATGGCACGCATCCTCCTaGATGGTCTGGTCTTCTTCCACGATGTTTGACATG +
Preference number: 6 (lower is better)
Translates to: PLVGVSRWHASS*MVWSSSTMFDM
Trigger: CATGTCAAACATCGTGGAAGAAGACCAGACCATCAAGGAGGATGCGTGCCATCGGCTCACCCCAACTAAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 72 bp ATCCTCCTTGATGGTCTGGTCTTCTTCCACGATGTTTaGCATGGGCGCATTGAGGCTAACCGTGTCCTCATC +
Preference number: 6 (lower is better)
Translates to: ILLDGLVFFHDV*HGRIEANRVLI
Trigger: GATGAGGACACGGTTAGCCTCAATGCGCCCATGTCAAACATCGTGGAAGAAGACCAGACCATCAAGGAGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 72 bp CTCTCTATGATATCTGCGCTTAGACCGTTGGGATCCTaGAGCAGCTCTGCCTCTCTCAGCTGCTCAATCATC +
Preference number: 6 (lower is better)
Translates to: LSMISALRPLGS*SSSASLSCSII
Trigger: GATGATTGAGCAGCTGAGAGAGGCAGAGCTGCTTCAGGATCCCAACGGTCTAAGCGCAGATATCATAGAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 72 bp CAAAATGGAAGGCTTCGGCTGAAATTCTCCTTTAGTTaGGGTGAGCCGATGGCACGCATCCTCCTTGATGGT +
Preference number: 6 (lower is better)
Translates to: QNGRLRLKFSFS*GEPMARILLDG
Trigger: ACCATCAAGGAGGATGCGTGCCATCGGCTCACCCCAACTAAAGGAGAATTTCAGCCGAAGCCTTCCATTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 72 bp ATTCCAAGTTTCTCTGCGGTCTTAGAAACACATGCCTaGAAAGCAACTGGGGTCGTCTTGGGGAGGACTCTG +
Preference number: 6 (lower is better)
Translates to: IPSFSAVLETHA*KATGVVLGRTL
Trigger: CAGAGTCCTCCCCAAGACGACCCCAGTTGCTTTCCAGGCATGTGTTTCTAAGACCGCAGAGAAACTTGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS TCA 72 bp GCCAAACGGAGCTGTGATGTTTGCAGTAGGAGACACTaGAGGGGAGTTCTCTCGTATCTCATTGGGAGAATA +
Preference number: 6 (lower is better)
Translates to: AKRSCDVCSRRH*RGVLSYLIGRI
Trigger: TATTCTCCCAATGAGATACGAGAGAACTCCCCTTCAGTGTCTCCTACTGCAAACATCACAGCTCCGTTTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS TCA 72 bp TCTCGTTGCAACTCACATCCAACTCCATTAACTGTTTaGGCTGACCTATCTCTTCAGGCAGTGATCCGAGCT +
Preference number: 6 (lower is better)
Translates to: SRCNSHPTPLTV*ADLSLQAVIRA
Trigger: AGCTCGGATCACTGCCTGAAGAGATAGGTCAGCTCAAACAGTTAATGGAGTTGGATGTGAGTTGCAACGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 72 bp TTGCAACTCACATCCAACTCCATTAACTGTTTGAGCTaGCCTATCTCTTCAGGCAGTGATCCGAGCTTGTTG +
Preference number: 6 (lower is better)
Translates to: LQLTSNSINCLS*PISSGSDPSLL
Trigger: CAACAAGCTCGGATCACTGCCTGAAGAGATAGGTCAGCTCAAACAGTTAATGGAGTTGGATGTGAGTTGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS TCA 72 bp TCTTTGGATGAATTTAGTAGTTCCTCCATGTGCCAGTaGGCATCCTCTTCTATCCGCAATAGCTCTTCACAG +
Preference number: 6 (lower is better)
Translates to: SLDEFSSSSMCQ*ASSSIRNSSSQ
Trigger: CTGTGAAGAGCTATTGCGGATAGAAGAGGATGCTCACTGGCACATGGAGGAACTACTAAATTCATCCAAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS GCA 72 bp ATCGTAAACTGTGGGTCTATAGATTCCAAGTTTCTCTaGGGTCTTAGAAACACATGCCTGGAAAGCAACTGG +
Preference number: 6 (lower is better)
Translates to: IVNCGSIDSKFL*GLRNTCLESNW
Trigger: CCAGTTGCTTTCCAGGCATGTGTTTCTAAGACCGCAGAGAAACTTGGAATCTATAGACCCACAGTTTACGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000088970.7
CDS TCA 72 bp TCTGATACAGTTGTGATACAGGTTAAGAATTTCCAGTaGTACAAATTGGCACAGCTCCATTGGCACTTCCAC +
Preference number: 6 (lower is better)
Translates to: SDTVVIQVKNFQ*YKLAQLHWHFH
Trigger: GTGGAAGTGCCAATGGAGCTGTGCCAATTTGTATCACTGGAAATTCTTAACCTGTATCACAACTGTATCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2
CDS CCA 72 bp GAAGGGGAGTTCTCTCGTATCTCATTGGGAGAATACTaGCTTCCATTACTCTGTAACATTAGATCATTTTGC +
Preference number: 6 (lower is better)
Translates to: EGEFSRISLGEY*LPLLCNIRSFC
Trigger: GCAAAATGATCTAATGTTACAGAGTAATGGAAGCCAGTATTCTCCCAATGAGATACGAGAGAACTCCCCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS CAA 90 bp ATGTTTGCAGTAGGAGACACTGAAGGGGAGTTCTCTCGTATCTCATaGGGAGAATACTGGCTTCCATTACTCTGTAACATTAGATCATTT +
Preference number: 6 (lower is better)
Translates to: MFAVGDTEGEFSRIS*GEYWLPLLCNIRSF
Trigger: AAATGATCTAATGTTACAGAGTAATGGAAGCCAGTATTCTCCCAATGAGATACGAGAGAACTCCCCTTCAGTGTCTCCTACTGCAAACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000088970.7
ENSMUST00000226799.2
ENSMUST00000228252.2
CDS TCA 72 bp TTAACAATGGCCTCAGGAATGACTCTGATACAGTTGTaGTACAGGTTAAGAATTTCCAGTGATACAAATTGG +
Preference number: 6 (lower is better)
Translates to: LTMASGMTLIQL*YRLRISSDTNW
Trigger: CCAATTTGTATCACTGGAAATTCTTAACCTGTATCACAACTGTATCAGAGTCATTCCTGAGGCCATTGTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000088970.7
ENSMUST00000228252.2