Pregenerated sensors for LRATD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072568Ensembl transcript IDs: ENSMUST00000100635.5
Found 117 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CAAGGATGGGAGAGCCGGGAGAGTTTGCTATTCCAGAGCTGCTGGTaGACAGCCATTCTGATTCCTCCCCTCCTGCAGTCTACACAGCGG | + |
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Preference number: 1 (lower is better) Translates to: QGWESRESLLFQSCW*TAILIPPLLQSTQR Trigger: CCGCTGTGTAGACTGCAGGAGGGGAGGAATCAGAATGGCTGTCCACCAGCAGCTCTGGAATAGCAAACTCTCCCGGCTCTCCCATCCTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR TCA 90 bp | TCCCACTTTACCCCACCTGGGAAAGGAAGGTGGACTGAGAGGGCCTaGAGAAAAAGCATCCCATGGCCACCCACCAGCCAATCCTACCTG | + |
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Preference number: 1 (lower is better) Translates to: SHFTPPGKGRWTERA*RKSIPWPPTSQSYL Trigger: CAGGTAGGATTGGCTGGTGGGTGGCCATGGGATGCTTTTTCTTCAGGCCCTCTCAGTCCACCTTCCTTTCCCAGGTGGGGTAAAGTGGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR CCA 90 bp | AGGCAAGGATGGGAGAGCCGGGAGAGTTTGCTATTCCAGAGCTGCTaGTGGACAGCCATTCTGATTCCTCCCCTCCTGCAGTCTACACAG | + |
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Preference number: 1 (lower is better) Translates to: RQGWESRESLLFQSC*WTAILIPPLLQSTQ Trigger: CTGTGTAGACTGCAGGAGGGGAGGAATCAGAATGGCTGTCCACCAGCAGCTCTGGAATAGCAAACTCTCCCGGCTCTCCCATCCTTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR TCA 90 bp | GCCGGGAGAGTTTGCTATTCCAGAGCTGCTGGTGGACAGCCATTCTaGTTCCTCCCCTCCTGCAGTCTACACAGCGGGCATCAATTTCCA | + |
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Preference number: 1 (lower is better) Translates to: AGRVCYSRAAGGQPF*FLPSCSLHSGHQFP Trigger: TGGAAATTGATGCCCGCTGTGTAGACTGCAGGAGGGGAGGAATCAGAATGGCTGTCCACCAGCAGCTCTGGAATAGCAAACTCTCCCGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR CCA 90 bp | TGGCTGGCCCTTGACAATGATTTACTTGTAACCGGGGGAAGGAATTaGAGTCTAAGCCAAAGACTCCGCTTAGAGCCAGCTTCCCAAGAG | + |
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Preference number: 1 (lower is better) Translates to: WLALDNDLLVTGGRN*SLSQRLRLEPASQE Trigger: CTCTTGGGAAGCTGGCTCTAAGCGGAGTCTTTGGCTTAGACTCCAATTCCTTCCCCCGGTTACAAGTAAATCATTGTCAAGGGCCAGCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR CCA 90 bp | CTACCTCTTCAGCCTGTCCGAATGCCGCCACCACCAACCTACGTTTaGGACTGTCATCAAATCTCTTCTGACAGTACTACATGGGATCTG | + |
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Preference number: 1 (lower is better) Translates to: LPLQPVRMPPPPTYV*DCHQISSDSTTWDL Trigger: CAGATCCCATGTAGTACTGTCAGAAGAGATTTGATGACAGTCCCAAACGTAGGTTGGTGGTGGCGGCATTCGGACAGGCTGAAGAGGTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR GCA 90 bp | CTGAGTGTAGTGAGGGATCCAGAGAGACAGAATGCAGGGCAAATGTaGTCTGAGATTTCCCCCAAGCCTGCTTGTATACGAAGGGTTAAA | + |
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Preference number: 1 (lower is better) Translates to: LSVVRDPERQNAGQM*SEISPKPACIRRVK Trigger: TTTAACCCTTCGTATACAAGCAGGCTTGGGGGAAATCTCAGAGCACATTTGCCCTGCATTCTGTCTCTCTGGATCCCTCACTACACTCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR CCA 90 bp | GTACATATGACAAGACTTTGTACTTTAAACTTCACCCATCATGGATaGCAAAGTAACCCTCACCCTACCACAGCAACTGTCTGTCGAGGA | + |
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Preference number: 1 (lower is better) Translates to: VHMTRLCTLNFTHHG*QSNPHPTTATVCRG Trigger: TCCTCGACAGACAGTTGCTGTGGTAGGGTGAGGGTTACTTTGCCATCCATGATGGGTGAAGTTTAAAGTACAAAGTCTTGTCATATGTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR CCA 90 bp | GGGTGTCTATGTGGAGAAAGTCATACACTGAGCTCTAATAATAGATaGTTTATTGGGAACCCTCATAACATTTTTCAAAAGGACTTGACA | + |
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Preference number: 1 (lower is better) Translates to: GCLCGESHTLSSNNR*FIGNPHNIFQKDLT Trigger: TGTCAAGTCCTTTTGAAAAATGTTATGAGGGTTCCCAATAAACCATCTATTATTAGAGCTCAGTGTATGACTTTCTCCACATAGACACCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR TCA 90 bp | AAAAACGTCAAAAGAAAGGGTGTCTATGTGGAGAAAGTCATACACTaGGCTCTAATAATAGATGGTTTATTGGGAACCCTCATAACATTT | + |
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Preference number: 1 (lower is better) Translates to: KNVKRKGVYVEKVIH*ALIIDGLLGTLITF Trigger: AAATGTTATGAGGGTTCCCAATAAACCATCTATTATTAGAGCTCAGTGTATGACTTTCTCCACATAGACACCCTTTCTTTTGACGTTTTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR CAA 90 bp | CTCCCAGCAGACCCGAAGCGGCTCCTCCCCAATCCTCTCCGGCCTTaGTACCCTGCATCCTCCAAGCTGAGTGTAGTGAGGGATCCAGAG | + |
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Preference number: 2 (lower is better) Translates to: LPADPKRLLPNPLRP*YPASSKLSVVRDPE Trigger: CTCTGGATCCCTCACTACACTCAGCTTGGAGGATGCAGGGTACAAAGGCCGGAGAGGATTGGGGAGGAGCCGCTTCGGGTCTGCTGGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR GCA 90 bp | CGGGGGAAGGAATTGGAGTCTAAGCCAAAGACTCCGCTTAGAGCCAGCTTCCCAGGAAGAGGGCGTGGCTaGAGCAAACAGCTTCCTTTT | + |
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Preference number: 2 (lower is better) Translates to: RGKELESKPKTPLRASFPGRGRG*SKQLPF Trigger: AAAAGGAAGCTGTTTGCTGCAGCCACGCCCTCTTCC...TGGGAAGCTGGCTCTAAGCGGAGTCTTTGGCTTAGACTCCAATTCCTTCCCCCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CCA 90 bp | CGGGGGAAGGAATTGGAGTCTAAGCCAAAGACTCCGCTTAGAGCCAGCTTCCCAAGAAAAAGCATCCCATaGCCACCCACCAGCCAATCC | + |
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Preference number: 2 (lower is better) Translates to: RGKELESKPKTPLRASFPRKSIP*PPTSQS Trigger: GGATTGGCTGGTGGGTGGCCATGGGATGCTTTTTCT...TGGGAAGCTGGCTCTAAGCGGAGTCTTTGGCTTAGACTCCAATTCCTTCCCCCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR TCA 90 bp | AGGACCCACAGGTTGAGGACCACTGCCTTAGACTTTCTACCCCCTAAGAAAACTGGTGGACAGCCATTCTaGTTCCTCCCCTCCTGCAGT | + |
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Preference number: 2 (lower is better) Translates to: RTHRLRTTALDFLPPKKTGGQPF*FLPSCS Trigger: ACTGCAGGAGGGGAGGAATCAGAATGGCTGTCCACC...AGTTTTCTTAGGGGGTAGAAAGTCTAAGGCAGTGGTCCTCAACCTGTGGGTCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CCA 90 bp | ATGCCACCACCCTTAGTAAAGGGTTCTGAATCGGATGTTCTCCAAGCCACAAAGGGGAGGAAGAGGGCGTaGCTGCAGCAAACAGCTTCC | + |
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Preference number: 2 (lower is better) Translates to: MPPPLVKGSESDVLQATKGRKRA*LQQTAS Trigger: GGAAGCTGTTTGCTGCAGCCACGCCCTCTTCCTCCC...CTTTGTGGCTTGGAGAACATCCGATTCAGAACCCTTTACTAAGGGTGGTGGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CCA 90 bp | TCACCCTACCACAGCAACTGTCTGTCGAGGAAGGGAGACCAGGGAGAGAAAAACGGGGCTGTTTGGTTTTaGTCTGCTGATCCCAGATCT | + |
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Preference number: 2 (lower is better) Translates to: SPYHSNCLSRKGDQGEKNGAVWF*SADPRS Trigger: AGATCTGGGATCAGCAGACCAAAACCAAACAGCCCC...GTTTTTCTCTCCCTGGTCTCCCTTCCTCGACAGACAGTTGCTGTGGTAGGGTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR TCA 90 bp | TCACCCTACCACAGCAACTGTCTGTCGAGGAAGGGAGACCAGGGAGAGAAAAACTCTGTGACCTGCAGATaGACACGCCAAACAGGTTTA | + |
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Preference number: 2 (lower is better) Translates to: SPYHSNCLSRKGDQGEKNSVTCR*TRQTGL Trigger: TAAACCTGTTTGGCGTGTTCATCTGCAGGTCACAGA...GTTTTTCTCTCCCTGGTCTCCCTTCCTCGACAGACAGTTGCTGTGGTAGGGTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR GCA 90 bp | AGGACCCACAGGTTGAGGACCACTGCCTTAGACTTTCTACCCCCTAAGAAAACTTTGCTATTCCAGAGCTaGTGGTGGACAGCCATTCTG | + |
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Preference number: 2 (lower is better) Translates to: RTHRLRTTALDFLPPKKTLLFQS*WWTAIL Trigger: CAGAATGGCTGTCCACCAGCAGCTCTGGAATAGCAA...AGTTTTCTTAGGGGGTAGAAAGTCTAAGGCAGTGGTCCTCAACCTGTGGGTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR GCA 90 bp | CAAAGAGGAATGCTACAGGTGGGGTGGACCTTAGGAGTTCTTCCTTTGCAGGTAAATGCAGGGCAAATGTaGTCTGAGATTTCCCCCAAG | + |
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Preference number: 2 (lower is better) Translates to: QRGMLQVGWTLGVLPLQVNAGQM*SEISPK Trigger: CTTGGGGGAAATCTCAGAGCACATTTGCCCTGCATT...TACCTGCAAAGGAAGAACTCCTAAGGTCCACCCCACCTGTAGCATTCCTCTTTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CCA 90 bp | ATGCCACCACCCTTAGTAAAGGGTTCTGAATCGGATGTTCTCCAAGCCACAAAGGGATACTTTATGGGGTaGCACAAGCCAACCCCATCT | + |
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Preference number: 2 (lower is better) Translates to: MPPPLVKGSESDVLQATKGYFMG*HKPTPS Trigger: AGATGGGGTTGGCTTGTGCCACCCCATAAAGTATCC...CTTTGTGGCTTGGAGAACATCCGATTCAGAACCCTTTACTAAGGGTGGTGGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CCA 90 bp | CAAAGAGGAATGCTACAGGTGGGGTGGACCTTAGGAGTTCTTCCTTTGCAGGTATTCACCCATCATGGATaGCAAAGTAACCCTCACCCT | + |
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Preference number: 2 (lower is better) Translates to: QRGMLQVGWTLGVLPLQVFTHHG*QSNPHP Trigger: AGGGTGAGGGTTACTTTGCCATCCATGATGGGTGAA...TACCTGCAAAGGAAGAACTCCTAAGGTCCACCCCACCTGTAGCATTCCTCTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CCA 90 bp | CAAAGAGGAATGCTACAGGTGGGGTGGACCTTAGGAGTTCTTCCTTTGCAGGTAATTGAATCCTTTCCCTaGCTGGCCCTTGACAATGAT | + |
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Preference number: 2 (lower is better) Translates to: QRGMLQVGWTLGVLPLQVIESFP*LALDND Trigger: ATCATTGTCAAGGGCCAGCCAGGGAAAGGATTCAAT...TACCTGCAAAGGAAGAACTCCTAAGGTCCACCCCACCTGTAGCATTCCTCTTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR TCA 90 bp | CAAAGAGGAATGCTACAGGTGGGGTGGACCTTAGGAGTTCTTCCTTTGCAGGTAAGTATGCTCAGTTTTTaGAAGCAGTTGACAGACTGC | + |
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Preference number: 2 (lower is better) Translates to: QRGMLQVGWTLGVLPLQVSMLSF*KQLTDC Trigger: GCAGTCTGTCAACTGCTTTCAAAAACTGAGCATACT...TACCTGCAAAGGAAGAACTCCTAAGGTCCACCCCACCTGTAGCATTCCTCTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CCA 90 bp | CAAAGAGGAATGCTACAGGTGGGGTGGACCTTAGGAGTTCTTCCTTTGCAGGTACTCTCTGCTGTTCCATaGACAAGACTATGTAATCAA | + |
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Preference number: 2 (lower is better) Translates to: QRGMLQVGWTLGVLPLQVLSAVP*TRLCNQ Trigger: TTGATTACATAGTCTTGTCCATGGAACAGCAGAGAG...TACCTGCAAAGGAAGAACTCCTAAGGTCCACCCCACCTGTAGCATTCCTCTTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR TCA 90 bp | CAAATTAAAGTTCCTACAATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCAGCCAACCCCATCTGTaGCCTGCAGATGAACACGCC | + |
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Preference number: 2 (lower is better) Translates to: QIKVPTICWERKCLEYISSQPHL*PADEHA Trigger: GGCGTGTTCATCTGCAGGTCACAGATGGGGTTGGCT...GGATATATACTCCAGGCATTTTCTTTCCCAGCAAATTGTAGGAACTTTAATTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR GCA 90 bp | CAAATTAAAGTTCCTACAATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCCAGGTTGAGGACCACTaGCTTAGACTTTCTACCCCC | + |
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Preference number: 2 (lower is better) Translates to: QIKVPTICWERKCLEYISQVEDH*LRLSTP Trigger: GGGGGTAGAAAGTCTAAGGCAGTGGTCCTCAACCTG...GGATATATACTCCAGGCATTTTCTTTCCCAGCAAATTGTAGGAACTTTAATTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR TCA 90 bp | AATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCTGATTCATAACCAAGAACAGGGTAGCACTGGTTaGTTCCCTAGAGGATACTTT | + |
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Preference number: 2 (lower is better) Translates to: NLLGKKMPGVYILIHNQEQGSTG*FPRGYF Trigger: AAAGTATCCTCTAGGGAATCAACCAGTGCTACCCTG...TTCTTGGTTATGAATCAGGATATATACTCCAGGCATTTTCTTTCCCAGCAAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR GCA 90 bp | AATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCTGATTCATAACCAAGAAACTTTCAAAGAGGAATaGTACAGGTGGGGTGGACCT | + |
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Preference number: 2 (lower is better) Translates to: NLLGKKMPGVYILIHNQETFKEE*YRWGGP Trigger: AGGTCCACCCCACCTGTAGCATTCCTCTTTGAAAGT...TTCTTGGTTATGAATCAGGATATATACTCCAGGCATTTTCTTTCCCAGCAAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CCA 90 bp | AATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCTGATTCATAACCAAGAACTATTCCAGAGCTGCTaGTGGACAGCCATTCTGATT | + |
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Preference number: 2 (lower is better) Translates to: NLLGKKMPGVYILIHNQELFQSC*WTAILI Trigger: AATCAGAATGGCTGTCCACCAGCAGCTCTGGAATAG...TTCTTGGTTATGAATCAGGATATATACTCCAGGCATTTTCTTTCCCAGCAAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR CAA 90 bp | TTAGTAAAGGGTTCTGAATCGGATGTTCTCCAAGCCACAAAGAAATaGGGTACATATGACAAGACTTTGTACTTTAAACTTCACCCATCA | + |
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Preference number: 2 (lower is better) Translates to: LVKGSESDVLQATKK*GTYDKTLYFKLHPS Trigger: TGATGGGTGAAGTTTAAAGTACAAAGTCTTGTCATATGTACCCAATTTCTTTGTGGCTTGGAGAACATCCGATTCAGAACCCTTTACTAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CCA 90 bp | CAAATTAAAGTTCCTACAATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCCAGTGTTATAAAAACTaGTGGAAGCAGCAAAGGCCT | + |
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Preference number: 2 (lower is better) Translates to: QIKVPTICWERKCLEYISQCYKN*WKQQRP Trigger: AGGCCTTTGCTGCTTCCACCAGTTTTTATAACACTG...GGATATATACTCCAGGCATTTTCTTTCCCAGCAAATTGTAGGAACTTTAATTTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR TCA 90 bp | AATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCTGATTCATAACCAAGAACCAGAAACCATCGTCTaGAACAGATCAACTTTCAAA | + |
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Preference number: 2 (lower is better) Translates to: NLLGKKMPGVYILIHNQEPETIV*NRSTFK Trigger: TTTGAAAGTTGATCTGTTTCAGACGATGGTTTCTGG...TTCTTGGTTATGAATCAGGATATATACTCCAGGCATTTTCTTTCCCAGCAAATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CCA 90 bp | AATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCTGATTCATAACCAAGAACTGCTACACTTAGTATaGTCTTTGAGGTCTGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: NLLGKKMPGVYILIHNQELLHLV*SLRSEK Trigger: TTTCTCAGACCTCAAAGACCATACTAAGTGTAGCAG...TTCTTGGTTATGAATCAGGATATATACTCCAGGCATTTTCTTTCCCAGCAAATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CCA 90 bp | AATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCTGATTCATAACCAAGAATCCAAACAAATCCATTaGATAACTATGATCACGCTC | + |
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Preference number: 2 (lower is better) Translates to: NLLGKKMPGVYILIHNQESKQIH*ITMITL Trigger: GAGCGTGATCATAGTTATCCAATGGATTTGTTTGGA...TTCTTGGTTATGAATCAGGATATATACTCCAGGCATTTTCTTTCCCAGCAAATT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR TCA 72 bp | ACCCCACCTGGGAAAGGAAGGTGGACTGAGAGGGCCTaGAGAAAAAGCATCCCATGGCCACCCACCAGCCAA | + |
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Preference number: 3 (lower is better) Translates to: TPPGKGRWTERA*RKSIPWPPTSQ Trigger: TTGGCTGGTGGGTGGCCATGGGATGCTTTTTCTTCAGGCCCTCTCAGTCCACCTTCCTTTCCCAGGTGGGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR TCA 72 bp | GTTTGCTATTCCAGAGCTGCTGGTGGACAGCCATTCTaGTTCCTCCCCTCCTGCAGTCTACACAGCGGGCAT | + |
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Preference number: 3 (lower is better) Translates to: VCYSRAAGGQPF*FLPSCSLHSGH Trigger: ATGCCCGCTGTGTAGACTGCAGGAGGGGAGGAATCAGAATGGCTGTCCACCAGCAGCTCTGGAATAGCAAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CAA 90 bp | TCACCCTACCACAGCAACTGTCTGTCGAGGAAGGGAGACCAGGGAGAGAAAAACGTAGTTTCAGCAGCCTaGTGCCCCGGGAATCCCATA | + |
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Preference number: 3 (lower is better) Translates to: SPYHSNCLSRKGDQGEKNVVSAA*CPGNPI Trigger: TATGGGATTCCCGGGGCACAAGGCTGCTGAAACTAC...GTTTTTCTCTCCCTGGTCTCCCTTCCTCGACAGACAGTTGCTGTGGTAGGGTGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR GCA 72 bp | AAAATATGTTGTCACGTGGTTGTCCTTGTCCCATGGTaGCAGGAGGGCCAGGAGCACCGCAGCTTTGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: KICCHVVVLVPW*QEGQEHRSFEK Trigger: CTTCTCAAAGCTGCGGTGCTCCTGGCCCTCCTGGCACCATGGGACAAGGACAACCACGTGACAACATATTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CAA 90 bp | AGGACCCACAGGTTGAGGACCACTGCCTTAGACTTTCTACCCCCTAAGAAAACTGAGAGCCGGGAGAGTTaGCTATTCCAGAGCTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: RTHRLRTTALDFLPPKKTESRES*LFQSCW Trigger: CCAGCAGCTCTGGAATAGCAAACTCTCCCGGCTCTC...AGTTTTCTTAGGGGGTAGAAAGTCTAAGGCAGTGGTCCTCAACCTGTGGGTCCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR TCA 72 bp | GGATCCAGAGAGACAGAATGCAGGGCAAATGTGCTCTaGGATTTCCCCCAAGCCTGCTTGTATACGAAGGGT | + |
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Preference number: 3 (lower is better) Translates to: GSRETECRANVL*DFPQACLYTKG Trigger: ACCCTTCGTATACAAGCAGGCTTGGGGGAAATCTCAGAGCACATTTGCCCTGCATTCTGTCTCTCTGGATCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR GCA 72 bp | GTGAGGGATCCAGAGAGACAGAATGCAGGGCAAATGTaGTCTGAGATTTCCCCCAAGCCTGCTTGTATACGA | + |
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Preference number: 3 (lower is better) Translates to: VRDPERQNAGQM*SEISPKPACIR Trigger: TCGTATACAAGCAGGCTTGGGGGAAATCTCAGAGCACATTTGCCCTGCATTCTGTCTCTCTGGATCCCTCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR CCA 72 bp | CAGCCTGTCCGAATGCCGCCACCACCAACCTACGTTTaGGACTGTCATCAAATCTCTTCTGACAGTACTACA | + |
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Preference number: 3 (lower is better) Translates to: QPVRMPPPPTYV*DCHQISSDSTT Trigger: TGTAGTACTGTCAGAAGAGATTTGATGACAGTCCCAAACGTAGGTTGGTGGTGGCGGCATTCGGACAGGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CAA 90 bp | CGGATGTTCTCCAAGCCACAAAGAAATTGGGTACATATGACAAGACTTTGTACTCCCAAGAGGAGGTACTaGGGGATAGGGAGGGGGAGG | + |
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Preference number: 3 (lower is better) Translates to: RMFSKPQRNWVHMTRLCTPKRRY*GIGRGR Trigger: CCTCCCCCTCCCTATCCCCAAGTACCTCCTCTTGGG...AGTACAAAGTCTTGTCATATGTACCCAATTTCTTTGTGGCTTGGAGAACATCCG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CAA 90 bp | AGGACCCACAGGTTGAGGACCACTGCCTTAGACTTTCTACCCCCTAAGAAAACTGCCTGTAGCCTGAGTTaGCTAAAGTATTTGCTGCAC | + |
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Preference number: 3 (lower is better) Translates to: RTHRLRTTALDFLPPKKTACSLS*LKYLLH Trigger: GTGCAGCAAATACTTTAGCAAACTCAGGCTACAGGC...AGTTTTCTTAGGGGGTAGAAAGTCTAAGGCAGTGGTCCTCAACCTGTGGGTCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CAA 90 bp | ATGCCACCACCCTTAGTAAAGGGTTCTGAATCGGATGTTCTCCAAGCCACAAAGAACCGGGGGAAGGAATaGGAGTCTAAGCCAAAGACT | + |
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Preference number: 3 (lower is better) Translates to: MPPPLVKGSESDVLQATKNRGKE*ESKPKT Trigger: AGTCTTTGGCTTAGACTCCAATTCCTTCCCCCGGTT...CTTTGTGGCTTGGAGAACATCCGATTCAGAACCCTTTACTAAGGGTGGTGGCAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR GCA 72 bp | CTGCTGATCCCAGATCTTGTAGTTTCAGCAGCCTTGTaGCCCGGGAATCCCATAAAAATAAATCACTCCAGC | + |
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Preference number: 3 (lower is better) Translates to: LLIPDLVVSAAL*PGNPIKINHSS Trigger: GCTGGAGTGATTTATTTTTATGGGATTCCCGGGGCACAAGGCTGCTGAAACTACAAGATCTGGGATCAGCAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| 3UTR-3UTR CAA 90 bp | AGGACCCACAGGTTGAGGACCACTGCCTTAGACTTTCTACCCCCTAAGAAAACTCACTTAGTATGGTCTTaGAGGTCTGAGAAAGAAGGC | + |
|
Preference number: 3 (lower is better) Translates to: RTHRLRTTALDFLPPKKTHLVWS*RSEKEG Trigger: GCCTTCTTTCTCAGACCTCAAAGACCATACTAAGTG...AGTTTTCTTAGGGGGTAGAAAGTCTAAGGCAGTGGTCCTCAACCTGTGGGTCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR CCA 72 bp | CTTGACAATGATTTACTTGTAACCGGGGGAAGGAATTaGAGTCTAAGCCAAAGACTCCGCTTAGAGCCAGCT | + |
|
Preference number: 3 (lower is better) Translates to: LDNDLLVTGGRN*SLSQRLRLEPA Trigger: AGCTGGCTCTAAGCGGAGTCTTTGGCTTAGACTCCAATTCCTTCCCCCGGTTACAAGTAAATCATTGTCAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR TCA 72 bp | GGAGTTCAAAGATTCCCCAAGCAAGAAGCCCAACAATaGCCGTGGCTTCAGGACACTCAAGTAAGATTTTGT | + |
|
Preference number: 3 (lower is better) Translates to: GVQRFPKQEAQQ*PWLQDTQVRFC Trigger: ACAAAATCTTACTTGAGTGTCCTGAAGCCACGGTCATTGTTGGGCTTCTTGCTTGGGGAATCTTTGAACTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR CCA 72 bp | TGGGACTGTCATCAAATCTCTTCTGACAGTACTACATaGGATCTGTGTCTGATGCCACCACCCTTAGTAAAG | + |
|
Preference number: 3 (lower is better) Translates to: WDCHQISSDSTT*DLCLMPPPLVK Trigger: CTTTACTAAGGGTGGTGGCATCAGACACAGATCCCATGTAGTACTGTCAGAAGAGATTTGATGACAGTCCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR CCA 72 bp | CAGATCAACTTTCAAAGAGGAATGCTACAGGTGGGGTaGACCTTAGGAGTTCTTCCTTTGCAGGTACTTCAT | + |
|
Preference number: 3 (lower is better) Translates to: QINFQRGMLQVG*TLGVLPLQVLH Trigger: ATGAAGTACCTGCAAAGGAAGAACTCCTAAGGTCCACCCCACCTGTAGCATTCCTCTTTGAAAGTTGATCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR TCA 72 bp | AAGGAGAGATTTAATTCTTTCCAGGGTAGCACTGGTTaGTTCCCTAGAGGATACTTTATGGGGTGGCACAAG | + |
|
Preference number: 3 (lower is better) Translates to: KERFNSFQGSTG*FPRGYFMGWHK Trigger: CTTGTGCCACCCCATAAAGTATCCTCTAGGGAATCAACCAGTGCTACCCTGGAAAGAATTAAATCTCTCCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR TCA 72 bp | CAAAACTGCTGGCAGCACATTCCAGAAACCATCGTCTaGAACAGATCAACTTTCAAAGAGGAATGCTACAGG | + |
|
Preference number: 3 (lower is better) Translates to: QNCWQHIPETIV*NRSTFKEECYR Trigger: CCTGTAGCATTCCTCTTTGAAAGTTGATCTGTTTCAGACGATGGTTTCTGGAATGTGCTGCCAGCAGTTTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR CCA 72 bp | ACAAGACTTTGTACTTTAAACTTCACCCATCATGGATaGCAAAGTAACCCTCACCCTACCACAGCAACTGTC | + |
|
Preference number: 3 (lower is better) Translates to: TRLCTLNFTHHG*QSNPHPTTATV Trigger: GACAGTTGCTGTGGTAGGGTGAGGGTTACTTTGCCATCCATGATGGGTGAAGTTTAAAGTACAAAGTCTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR-3UTR CAA 90 bp | CGGATGTTCTCCAAGCCACAAAGAAATTGGGTACATATGACAAGACTTTGTACTAGACACAAAGGGCTATaGCCTCCCCTGATAACAACA | + |
|
Preference number: 3 (lower is better) Translates to: RMFSKPQRNWVHMTRLCTRHKGL*PPLITT Trigger: TGTTGTTATCAGGGGAGGCAATAGCCCTTTGTGTCT...AGTACAAAGTCTTGTCATATGTACCCAATTTCTTTGTGGCTTGGAGAACATCCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR-3UTR CAA 90 bp | CGGATGTTCTCCAAGCCACAAAGAAATTGGGTACATATGACAAGACTTTGTACTAACCCTAGGTCCAGCTaGGTTTTTAAAGGGTTACTT | + |
|
Preference number: 3 (lower is better) Translates to: RMFSKPQRNWVHMTRLCTNPRSS*VFKGLL Trigger: AAGTAACCCTTTAAAAACCAAGCTGGACCTAGGGTT...AGTACAAAGTCTTGTCATATGTACCCAATTTCTTTGTGGCTTGGAGAACATCCG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR TCA 72 bp | AAAAGAAAGGGTGTCTATGTGGAGAAAGTCATACACTaGGCTCTAATAATAGATGGTTTATTGGGAACCCTC | + |
|
Preference number: 3 (lower is better) Translates to: KRKGVYVEKVIH*ALIIDGLLGTL Trigger: GAGGGTTCCCAATAAACCATCTATTATTAGAGCTCAGTGTATGACTTTCTCCACATAGACACCCTTTCTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR-3UTR CAA 90 bp | AATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCTGATTCATAACCAAGAACAAGCCACAAAGAAATaGGGTACATATGACAAGACT | + |
|
Preference number: 3 (lower is better) Translates to: NLLGKKMPGVYILIHNQEQATKK*GTYDKT Trigger: AGTCTTGTCATATGTACCCAATTTCTTTGTGGCTTG...TTCTTGGTTATGAATCAGGATATATACTCCAGGCATTTTCTTTCCCAGCAAATT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR CCA 72 bp | ATAATATCCTCTGTGTTTATTCTCTCTGCTGTTCCATaGACAAGACTATGTAATCAAATACCTATGAGCTCA | + |
|
Preference number: 3 (lower is better) Translates to: IISSVFILSAVP*TRLCNQIPMSS Trigger: TGAGCTCATAGGTATTTGATTACATAGTCTTGTCCATGGAACAGCAGAGAGAATAAACACAGAGGATATTAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR TCA 90 bp | CGGGGGAAGGAATTGGAGTCTAAGCCAAAGACTCCGCTTAGAGCCAGCTTCCCAAGCGATACAGATCGTTaGCCACGCGGCCGCGCCGGC | + |
|
Preference number: 4 (lower is better) Translates to: RGKELESKPKTPLRASFPSDTDR*PRGRAG Trigger: GCCGGCGCGGCCGCGTGGTCAACGATCTGTATCGCT...TGGGAAGCTGGCTCTAAGCGGAGTCTTTGGCTTAGACTCCAATTCCTTCCCCCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR GCA 90 bp | TCACCCTACCACAGCAACTGTCTGTCGAGGAAGGGAGACCAGGGAGAGAAAAACTCCGGCTCAGCCGGGTaGAGGTGCGTGGCGAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: SPYHSNCLSRKGDQGEKNSGSAG*RCVASS Trigger: GGAGCTCGCCACGCACCTGCACCCGGCTGAGCCGGA...GTTTTTCTCTCCCTGGTCTCCCTTCCTCGACAGACAGTTGCTGTGGTAGGGTGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR CCA 90 bp | CGGGGGAAGGAATTGGAGTCTAAGCCAAAGACTCCGCTTAGAGCCAGCTTCCCATCCTTGGCGCCCACGTaGGCCAGCGCGTTGCGCACT | + |
|
Preference number: 4 (lower is better) Translates to: RGKELESKPKTPLRASFPSLAPT*ASALRT Trigger: AGTGCGCAACGCGCTGGCCCACGTGGGCGCCAAGGA...TGGGAAGCTGGCTCTAAGCGGAGTCTTTGGCTTAGACTCCAATTCCTTCCCCCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR CCA 90 bp | CGGGGGAAGGAATTGGAGTCTAAGCCAAAGACTCCGCTTAGAGCCAGCTTCCCACCGGGTGCAGGTGCGTaGCGAGCTCCTGTAGCACCG | + |
|
Preference number: 4 (lower is better) Translates to: RGKELESKPKTPLRASFPPGAGA*RAPVAP Trigger: CGGTGCTACAGGAGCTCGCCACGCACCTGCACCCGG...TGGGAAGCTGGCTCTAAGCGGAGTCTTTGGCTTAGACTCCAATTCCTTCCCCCG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR TCA 90 bp | AGGACCCACAGGTTGAGGACCACTGCCTTAGACTTTCTACCCCCTAAGAAAACTCGGAGTTGCGCCAGCTaGGCTCGCGCTCCTTGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: RTHRLRTTALDFLPPKKTRSCAS*ARAPWR Trigger: GCGCCAAGGAGCGCGAGCTCAGCTGGCGCAACTCCG...AGTTTTCTTAGGGGGTAGAAAGTCTAAGGCAGTGGTCCTCAACCTGTGGGTCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR GCA 90 bp | TCCCTAAGTCCCCTTCCTCCTCCCCTGTCCAAAGCCTGCAGTACATTTCACCAACGGTCAGGAAGCTGTTaGTCACCTCCAGCCGGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: SLSPLPPPLSKACSTFHQRSGSC*SPPAGA Trigger: TGCACCGGCTGGAGGTGAGCAACAGCTTCCTGACCG...TTGGTGAAATGTACTGCAGGCTTTGGACAGGGGAGGAGGAAGGGGACTTAGGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR TCA 90 bp | TCACCCTACCACAGCAACTGTCTGTCGAGGAAGGGAGACCAGGGAGAGAAAAACTGCGCCGCTTCTCCATaGTCAAGTCCTCCAGGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: SPYHSNCLSRKGDQGEKNCAASP*SSPPGS Trigger: AGAGCCTGGAGGACTTGATCATGGAGAAGCGGCGCA...GTTTTTCTCTCCCTGGTCTCCCTTCCTCGACAGACAGTTGCTGTGGTAGGGTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR GCA 90 bp | CGGGGGAAGGAATTGGAGTCTAAGCCAAAGACTCCGCTTAGAGCCAGCTTCCCATCCAGCCGGTGCAAATaGACCACCTGGAAATTGCCC | + |
|
Preference number: 4 (lower is better) Translates to: RGKELESKPKTPLRASFPSSRCK*TTWKLP Trigger: GGGCAATTTCCAGGTGGTGCATTTGCACCGGCTGGA...TGGGAAGCTGGCTCTAAGCGGAGTCTTTGGCTTAGACTCCAATTCCTTCCCCCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR GCA 90 bp | CAAAGAGGAATGCTACAGGTGGGGTGGACCTTAGGAGTTCTTCCTTTGCAGGTAAGGGCTGCTTGCCGATaGGCAGCTCGCCACCGATCT | + |
|
Preference number: 4 (lower is better) Translates to: QRGMLQVGWTLGVLPLQVRAACR*AARHRS Trigger: AGATCGGTGGCGAGCTGCGCATCGGCAAGCAGCCCT...TACCTGCAAAGGAAGAACTCCTAAGGTCCACCCCACCTGTAGCATTCCTCTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR GCA 90 bp | AGGACCCACAGGTTGAGGACCACTGCCTTAGACTTTCTACCCCCTAAGAAAACTAACGGTAGGGCTGCTTaGCGATGCGCAGCTCGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: RTHRLRTTALDFLPPKKTNGRAA*RCAARH Trigger: GTGGCGAGCTGCGCATCGGCAAGCAGCCCTACCGTT...AGTTTTCTTAGGGGGTAGAAAGTCTAAGGCAGTGGTCCTCAACCTGTGGGTCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR GCA 90 bp | TCCCTAAGTCCCCTTCCTCCTCCCCTGTCCAAAGCCTGCAGTACATTTCACCAACTCACCTCCAGCCGGTaGAAATGCACCACCTGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: SLSPLPPPLSKACSTFHQLTSSR*KCTTWK Trigger: TTTCCAGGTGGTGCATTTGCACCGGCTGGAGGTGAG...TTGGTGAAATGTACTGCAGGCTTTGGACAGGGGAGGAGGAAGGGGACTTAGGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR CCA 90 bp | AGGACCCACAGGTTGAGGACCACTGCCTTAGACTTTCTACCCCCTAAGAAAACTCGGTCGGGTCGGCCGTaGGAACTTCCTTATAACTTA | + |
|
Preference number: 4 (lower is better) Translates to: RTHRLRTTALDFLPPKKTRSGRP*ELPYNL Trigger: TAAGTTATAAGGAAGTTCCCACGGCCGACCCGACCG...AGTTTTCTTAGGGGGTAGAAAGTCTAAGGCAGTGGTCCTCAACCTGTGGGTCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR CAA 72 bp | GTACTAAAGTGCACGGAAGTTCAGTTGCAGACACAATaGCTACCTCTTCAGCCTGTCCGAATGCCGCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: VLKCTEVQLQTQ*LPLQPVRMPPP Trigger: TGGTGGCGGCATTCGGACAGGCTGAAGAGGTAGCAATTGTGTCTGCAACTGAACTTCCGTGCACTTTAGTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR CAA 72 bp | TACGAAGGGTTAAATTTGGTCCCAGATCTGATAGGGTaGAAGCCGCAAGCAAGTTCCCACTTTACCCCACCT | + |
|
Preference number: 4 (lower is better) Translates to: YEGLNLVPDLIG*KPQASSHFTPP Trigger: AGGTGGGGTAAAGTGGGAACTTGCTTGCGGCTTCAACCCTATCAGATCTGGGACCAAATTTAACCCTTCGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR CAA 72 bp | GGTCTGCTGATCCCAGATCTTGTAGTTTCAGCAGCCTaGTGCCCCGGGAATCCCATAAAAATAAATCACTCC | + |
|
Preference number: 4 (lower is better) Translates to: GLLIPDLVVSAA*CPGNPIKINHS Trigger: GGAGTGATTTATTTTTATGGGATTCCCGGGGCACAAGGCTGCTGAAACTACAAGATCTGGGATCAGCAGACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR CCA 90 bp | CAAATTAAAGTTCCTACAATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCAAGCCCCTGGGGCGGTaGCTGAGGTTCCACATCCTC | + |
|
Preference number: 4 (lower is better) Translates to: QIKVPTICWERKCLEYISKPLGR*LRFHIL Trigger: GAGGATGTGGAACCTCAGCCACCGCCCCAGGGGCTT...GGATATATACTCCAGGCATTTTCTTTCCCAGCAAATTGTAGGAACTTTAATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR CCA 90 bp | AGGACCCACAGGTTGAGGACCACTGCCTTAGACTTTCTACCCCCTAAGAAAACTCATCCTCGTCGTCATTaGAGAAAATATAAGAGACTC | + |
|
Preference number: 4 (lower is better) Translates to: RTHRLRTTALDFLPPKKTHPRRH*RKYKRL Trigger: GAGTCTCTTATATTTTCTCCAATGACGACGAGGATG...AGTTTTCTTAGGGGGTAGAAAGTCTAAGGCAGTGGTCCTCAACCTGTGGGTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR CCA 90 bp | CGGATGTTCTCCAAGCCACAAAGAAATTGGGTACATATGACAAGACTTTGTACTAGCGCTAGGGCTCAGTaGCTTGTAGCGATACAGATC | + |
|
Preference number: 4 (lower is better) Translates to: RMFSKPQRNWVHMTRLCTSARAQ*LVAIQI Trigger: GATCTGTATCGCTACAAGCCACTGAGCCCTAGCGCT...AGTACAAAGTCTTGTCATATGTACCCAATTTCTTTGTGGCTTGGAGAACATCCG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR TCA 90 bp | CAAATTAAAGTTCCTACAATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCGCCCAGTGCGGGTATTaGGCCTGCGATACAAACTCC | + |
|
Preference number: 4 (lower is better) Translates to: QIKVPTICWERKCLEYISAQCGY*ACDTNS Trigger: GGAGTTTGTATCGCAGGCTCAATACCCGCACTGGGC...GGATATATACTCCAGGCATTTTCTTTCCCAGCAAATTGTAGGAACTTTAATTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR GCA 90 bp | CAAATTAAAGTTCCTACAATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCACTCGAGAGTGTGGCTaGGCTGAGCCGAGAGCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: QIKVPTICWERKCLEYISTRECG*AEPRAE Trigger: TTCAGCTCTCGGCTCAGCGCAGCCACACTCTCGAGT...GGATATATACTCCAGGCATTTTCTTTCCCAGCAAATTGTAGGAACTTTAATTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR CAA 72 bp | TATAACACAAGTTACCTGCTACACTTAGTATGGTCTTaGAGGTCTGAGAAAGAAGGCAAGGATGGGAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: YNTSYLLHLVWS*RSEKEGKDGRA Trigger: GGCTCTCCCATCCTTGCCTTCTTTCTCAGACCTCAAAGACCATACTAAGTGTAGCAGGTAACTTGTGTTATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS-3UTR GCA 90 bp | CAAATTAAAGTTCCTACAATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCGCACCACCTGGAAATTaGCCACGTAGACAGCCCAGT | + |
|
Preference number: 4 (lower is better) Translates to: QIKVPTICWERKCLEYISAPPGN*PRRQPS Trigger: ACTGGGCTGTCTACGTGGGCAATTTCCAGGTGGTGC...GGATATATACTCCAGGCATTTTCTTTCCCAGCAAATTGTAGGAACTTTAATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR CAA 72 bp | CAAGCCACAAAGAAATTGGGTACATATGACAAGACTTaGTACTTTAAACTTCACCCATCATGGATGGCAAAG | + |
|
Preference number: 4 (lower is better) Translates to: QATKKLGTYDKT*YFKLHPSWMAK Trigger: CTTTGCCATCCATGATGGGTGAAGTTTAAAGTACAAAGTCTTGTCATATGTACCCAATTTCTTTGTGGCTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| 3UTR CAA 72 bp | GGTTCTGAATCGGATGTTCTCCAAGCCACAAAGAAATaGGGTACATATGACAAGACTTTGTACTTTAAACTT | + |
|
Preference number: 4 (lower is better) Translates to: GSESDVLQATKK*GTYDKTLYFKL Trigger: AAGTTTAAAGTACAAAGTCTTGTCATATGTACCCAATTTCTTTGTGGCTTGGAGAACATCCGATTCAGAACC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS GCA 90 bp | CGAGTCGCGTCGCTGTCGCCCTCATCCGGCTCAGCCGGGTGCAGGTaGGTGGCGAGCTCCTGTAGCACCGCCGCGCGTCCGATCTGGTCG | + |
|
Preference number: 5 (lower is better) Translates to: RVASLSPSSGSAGCR*VASSCSTAARPIWS Trigger: CGACCAGATCGGACGCGCGGCGGTGCTACAGGAGCTCGCCACGCACCTGCACCCGGCTGAGCCGGATGAGGGCGACAGCGACGCGACTCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS GCA 90 bp | GTAGTCCGAGTCGCGTCGCTGTCGCCCTCATCCGGCTCAGCCGGGTaGAGGTGCGTGGCGAGCTCCTGTAGCACCGCCGCGCGTCCGATC | + |
|
Preference number: 5 (lower is better) Translates to: VVRVASLSPSSGSAG*RCVASSCSTAARPI Trigger: GATCGGACGCGCGGCGGTGCTACAGGAGCTCGCCACGCACCTGCACCCGGCTGAGCCGGATGAGGGCGACAGCGACGCGACTCGGACTAC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS CCA 90 bp | TCGCGTCGCTGTCGCCCTCATCCGGCTCAGCCGGGTGCAGGTGCGTaGCGAGCTCCTGTAGCACCGCCGCGCGTCCGATCTGGTCGTTGC | + |
|
Preference number: 5 (lower is better) Translates to: SRRCRPHPAQPGAGA*RAPVAPPRVRSGRC Trigger: GCAACGACCAGATCGGACGCGCGGCGGTGCTACAGGAGCTCGCCACGCACCTGCACCCGGCTGAGCCGGATGAGGGCGACAGCGACGCGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS CCA 90 bp | GCCCACGTGGGCCAGCGCGTTGCGCACTACAGCGCTAGGGCTCAGTaGCTTGTAGCGATACAGATCGTTGACCACGCGGCCGCGCCGGCC | + |
|
Preference number: 5 (lower is better) Translates to: AHVGQRVAHYSARAQ*LVAIQIVDHAAAPA Trigger: GGCCGGCGCGGCCGCGTGGTCAACGATCTGTATCGCTACAAGCCACTGAGCCCTAGCGCTGTAGTGCGCAACGCGCTGGCCCACGTGGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS CCA 90 bp | CTCTCGGAGTTGCGCCAGCTGAGCTCGCGCTCCTTGGCGCCCACGTaGGCCAGCGCGTTGCGCACTACAGCGCTAGGGCTCAGTGGCTTG | + |
|
Preference number: 5 (lower is better) Translates to: LSELRQLSSRSLAPT*ASALRTTALGLSGL Trigger: CAAGCCACTGAGCCCTAGCGCTGTAGTGCGCAACGCGCTGGCCCACGTGGGCGCCAAGGAGCGCGAGCTCAGCTGGCGCAACTCCGAGAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS GCA 90 bp | CCACGCGGCCGCGCCGGCCCTGGCTCGCATCGGTCAGGAAGCTGTTaGTCACCTCCAGCCGGTGCAAATGCACCACCTGGAAATTGCCCA | + |
|
Preference number: 5 (lower is better) Translates to: PRGRAGPGSHRSGSC*SPPAGANAPPGNCP Trigger: TGGGCAATTTCCAGGTGGTGCATTTGCACCGGCTGGAGGTGAGCAACAGCTTCCTGACCGATGCGAGCCAGGGCCGGCGCGGCCGCGTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS TCA 90 bp | GTAGCACCGCCGCGCGTCCGATCTGGTCGTTGCGCCGCTTCTCCATaGTCAAGTCCTCCAGGCTCTGGAACTCGAGAGTGTGGCTGCGCT | + |
|
Preference number: 5 (lower is better) Translates to: VAPPRVRSGRCAASP*SSPPGSGTRECGCA Trigger: AGCGCAGCCACACTCTCGAGTTCCAGAGCCTGGAGGACTTGATCATGGAGAAGCGGCGCAACGACCAGATCGGACGCGCGGCGGTGCTAC 63% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS GCA 90 bp | GTTCCACATCCTCGTCGTCATTGGAGAAAATATAAGAGACTCCGATaGGGGGCCCATCGTCTCGATCCACGCCGGTCGGGTCGGCCGTGG | + |
|
Preference number: 5 (lower is better) Translates to: VPHPRRHWRKYKRLR*GAHRLDPRRSGRPW Trigger: CCACGGCCGACCCGACCGGCGTGGATCGAGACGATGGGCCCCGCATCGGAGTCTCTTATATTTTCTCCAATGACGACGAGGATGTGGAAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS CCA 90 bp | CGATGCGGGGCCCATCGTCTCGATCCACGCCGGTCGGGTCGGCCGTaGGAACTTCCTTATAACTTAGGTGGGTCAGTTTTTCCACCTGGT | + |
|
Preference number: 5 (lower is better) Translates to: RCGAHRLDPRRSGRP*ELPYNLGGSVFPPG Trigger: ACCAGGTGGAAAAACTGACCCACCTAAGTTATAAGGAAGTTCCCACGGCCGACCCGACCGGCGTGGATCGAGACGATGGGCCCCGCATCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS TCA 90 bp | GAGCCTGCGATACAAACTCCACCAGGTCACCCGGACTGCACTTGTTaGGCAAGTTCTCCGGTGTGTAGGTGCTCAGAGCCGCCGATCCTG | + |
|
Preference number: 5 (lower is better) Translates to: EPAIQTPPGHPDCTC*ASSPVCRCSEPPIL Trigger: CAGGATCGGCGGCTCTGAGCACCTACACACCGGAGAACTTGCTCAACAAGTGCAGTCCGGGTGACCTGGTGGAGTTTGTATCGCAGGCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
||
| CDS GCA 90 bp | AGCTGTTGCTCACCTCCAGCCGGTGCAAATGCACCACCTGGAAATTaGCCACGTAGACAGCCCAGTGCGGGTATTGAGCCTGCGATACAA | + |
|
Preference number: 5 (lower is better) Translates to: SCCSPPAGANAPPGN*PRRQPSAGIEPAIQ Trigger: TTGTATCGCAGGCTCAATACCCGCACTGGGCTGTCTACGTGGGCAATTTCCAGGTGGTGCATTTGCACCGGCTGGAGGTGAGCAACAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS GCA 90 bp | AGGTGCTCAGAGCCGCCGATCCTGGCGCGAAGCTTTTCTGATAGATaGACTCATCACGATAAAACACCGAGCATTCCACCTCGTGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: RCSEPPILARSFSDR*THHDKTPSIPPRAA Trigger: GGCAGCACGAGGTGGAATGCTCGGTGTTTTATCGTGATGAGTGCATCTATCAGAAAAGCTTCGCGCCAGGATCGGCGGCTCTGAGCACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS-3UTR CAA 90 bp | AATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCTGATTCATAACCAAGAACTGAGCTCGCGCTCCTaGGCGCCCACGTGGGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: NLLGKKMPGVYILIHNQELSSRS*APTWAS Trigger: GCTGGCCCACGTGGGCGCCAAGGAGCGCGAGCTCAG...TTCTTGGTTATGAATCAGGATATATACTCCAGGCATTTTCTTTCCCAGCAAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS-3UTR CAA 90 bp | CGGATGTTCTCCAAGCCACAAAGAAATTGGGTACATATGACAAGACTTTGTACTAGCCCAGTGCGGGTATaGAGCCTGCGATACAAACTC | + |
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Preference number: 5 (lower is better) Translates to: RMFSKPQRNWVHMTRLCTSPVRV*SLRYKL Trigger: GAGTTTGTATCGCAGGCTCAATACCCGCACTGGGCT...AGTACAAAGTCTTGTCATATGTACCCAATTTCTTTGTGGCTTGGAGAACATCCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS-3UTR CAA 90 bp | AATTTGCTGGGAAAGAAAATGCCTGGAGTATATATCCTGATTCATAACCAAGAACGTCCGATCTGGTCGTaGCGCCGCTTCTCCATGATC | + |
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Preference number: 5 (lower is better) Translates to: NLLGKKMPGVYILIHNQERPIWS*RRFSMI Trigger: GATCATGGAGAAGCGGCGCAACGACCAGATCGGACG...TTCTTGGTTATGAATCAGGATATATACTCCAGGCATTTTCTTTCCCAGCAAATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS GCA 72 bp | GTCGCGTCGCTGTCGCCCTCATCCGGCTCAGCCGGGTaGAGGTGCGTGGCGAGCTCCTGTAGCACCGCCGCG | + |
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Preference number: 6 (lower is better) Translates to: VASLSPSSGSAG*RCVASSCSTAA Trigger: CGCGGCGGTGCTACAGGAGCTCGCCACGCACCTGCACCCGGCTGAGCCGGATGAGGGCGACAGCGACGCGAC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS TCA 72 bp | GGCACCAGGCCGCAAAGCTCTCGGAGTTGCGCCAGCTaGGCTCGCGCTCCTTGGCGCCCACGTGGGCCAGCG | + |
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Preference number: 6 (lower is better) Translates to: GTRPQSSRSCAS*ARAPWRPRGPA Trigger: CGCTGGCCCACGTGGGCGCCAAGGAGCGCGAGCTCAGCTGGCGCAACTCCGAGAGCTTTGCGGCCTGGTGCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS CCA 72 bp | TTGCGCCAGCTGAGCTCGCGCTCCTTGGCGCCCACGTaGGCCAGCGCGTTGCGCACTACAGCGCTAGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: LRQLSSRSLAPT*ASALRTTALGL Trigger: GAGCCCTAGCGCTGTAGTGCGCAACGCGCTGGCCCACGTGGGCGCCAAGGAGCGCGAGCTCAGCTGGCGCAA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS CCA 72 bp | TGTCGCCCTCATCCGGCTCAGCCGGGTGCAGGTGCGTaGCGAGCTCCTGTAGCACCGCCGCGCGTCCGATCT | + |
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Preference number: 6 (lower is better) Translates to: CRPHPAQPGAGA*RAPVAPPRVRS Trigger: AGATCGGACGCGCGGCGGTGCTACAGGAGCTCGCCACGCACCTGCACCCGGCTGAGCCGGATGAGGGCGACA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS CAA 90 bp | CAGGCCGCAAAGCTCTCGGAGTTGCGCCAGCTGAGCTCGCGCTCCTaGGCGCCCACGTGGGCCAGCGCGTTGCGCACTACAGCGCTAGGG | + |
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Preference number: 6 (lower is better) Translates to: QAAKLSELRQLSSRS*APTWASALRTTALG Trigger: CCCTAGCGCTGTAGTGCGCAACGCGCTGGCCCACGTGGGCGCCAAGGAGCGCGAGCTCAGCTGGCGCAACTCCGAGAGCTTTGCGGCCTG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS CAA 72 bp | AAGCTCTCGGAGTTGCGCCAGCTGAGCTCGCGCTCCTaGGCGCCCACGTGGGCCAGCGCGTTGCGCACTACA | + |
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Preference number: 6 (lower is better) Translates to: KLSELRQLSSRS*APTWASALRTT Trigger: TGTAGTGCGCAACGCGCTGGCCCACGTGGGCGCCAAGGAGCGCGAGCTCAGCTGGCGCAACTCCGAGAGCTT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS GCA 72 bp | CGCGCCGGCCCTGGCTCGCATCGGTCAGGAAGCTGTTaGTCACCTCCAGCCGGTGCAAATGCACCACCTGGA | + |
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Preference number: 6 (lower is better) Translates to: RAGPGSHRSGSC*SPPAGANAPPG Trigger: TCCAGGTGGTGCATTTGCACCGGCTGGAGGTGAGCAACAGCTTCCTGACCGATGCGAGCCAGGGCCGGCGCG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS CCA 72 bp | GGCCAGCGCGTTGCGCACTACAGCGCTAGGGCTCAGTaGCTTGTAGCGATACAGATCGTTGACCACGCGGCC | + |
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Preference number: 6 (lower is better) Translates to: GQRVAHYSARAQ*LVAIQIVDHAA Trigger: GGCCGCGTGGTCAACGATCTGTATCGCTACAAGCCACTGAGCCCTAGCGCTGTAGTGCGCAACGCGCTGGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS CAA 72 bp | AGCTCCTGTAGCACCGCCGCGCGTCCGATCTGGTCGTaGCGCCGCTTCTCCATGATCAAGTCCTCCAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: SSCSTAARPIWS*RRFSMIKSSRL Trigger: GAGCCTGGAGGACTTGATCATGGAGAAGCGGCGCAACGACCAGATCGGACGCGCGGCGGTGCTACAGGAGCT 64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS TCA 72 bp | CCGCGCGTCCGATCTGGTCGTTGCGCCGCTTCTCCATaGTCAAGTCCTCCAGGCTCTGGAACTCGAGAGTGT | + |
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Preference number: 6 (lower is better) Translates to: PRVRSGRCAASP*SSPPGSGTREC Trigger: ACACTCTCGAGTTCCAGAGCCTGGAGGACTTGATCATGGAGAAGCGGCGCAACGACCAGATCGGACGCGCGG 61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS CCA 72 bp | GTCGGACAAAGCTCCGCCATCAAGCCCCTGGGGCGGTaGCTGAGGTTCCACATCCTCGTCGTCATTGGAGAA | + |
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Preference number: 6 (lower is better) Translates to: VGQSSAIKPLGR*LRFHILVVIGE Trigger: TTCTCCAATGACGACGAGGATGTGGAACCTCAGCCACCGCCCCAGGGGCTTGATGGCGGAGCTTTGTCCGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS GCA 72 bp | CCTCGTCGTCATTGGAGAAAATATAAGAGACTCCGATaGGGGGCCCATCGTCTCGATCCACGCCGGTCGGGT | + |
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Preference number: 6 (lower is better) Translates to: PRRHWRKYKRLR*GAHRLDPRRSG Trigger: ACCCGACCGGCGTGGATCGAGACGATGGGCCCCGCATCGGAGTCTCTTATATTTTCTCCAATGACGACGAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS GCA 72 bp | TCACCTCCAGCCGGTGCAAATGCACCACCTGGAAATTaGCCACGTAGACAGCCCAGTGCGGGTATTGAGCCT | + |
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Preference number: 6 (lower is better) Translates to: SPPAGANAPPGN*PRRQPSAGIEP Trigger: AGGCTCAATACCCGCACTGGGCTGTCTACGTGGGCAATTTCCAGGTGGTGCATTTGCACCGGCTGGAGGTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS GCA 72 bp | TCAAGTCCTCCAGGCTCTGGAACTCGAGAGTGTGGCTaGGCTGAGCCGAGAGCTGAATCTGCAAACGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: SSPPGSGTRECG*AEPRAESANGR Trigger: CCTACCGTTTGCAGATTCAGCTCTCGGCTCAGCGCAGCCACACTCTCGAGTTCCAGAGCCTGGAGGACTTGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS CAA 72 bp | CTGGAAATTGCCCACGTAGACAGCCCAGTGCGGGTATaGAGCCTGCGATACAAACTCCACCAGGTCACCCGG | + |
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Preference number: 6 (lower is better) Translates to: LEIAHVDSPVRV*SLRYKLHQVTR Trigger: CCGGGTGACCTGGTGGAGTTTGTATCGCAGGCTCAATACCCGCACTGGGCTGTCTACGTGGGCAATTTCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS CAA 90 bp | ATGCACCACCTGGAAATTGCCCACGTAGACAGCCCAGTGCGGGTATaGAGCCTGCGATACAAACTCCACCAGGTCACCCGGACTGCACTT | + |
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Preference number: 6 (lower is better) Translates to: MHHLEIAHVDSPVRV*SLRYKLHQVTRTAL Trigger: AAGTGCAGTCCGGGTGACCTGGTGGAGTTTGTATCGCAGGCTCAATACCCGCACTGGGCTGTCTACGTGGGCAATTTCCAGGTGGTGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS CCA 72 bp | GCCCATCGTCTCGATCCACGCCGGTCGGGTCGGCCGTaGGAACTTCCTTATAACTTAGGTGGGTCAGTTTTT | + |
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Preference number: 6 (lower is better) Translates to: AHRLDPRRSGRP*ELPYNLGGSVF Trigger: AAAAACTGACCCACCTAAGTTATAAGGAAGTTCCCACGGCCGACCCGACCGGCGTGGATCGAGACGATGGGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS TCA 72 bp | ATACAAACTCCACCAGGTCACCCGGACTGCACTTGTTaGGCAAGTTCTCCGGTGTGTAGGTGCTCAGAGCCG | + |
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Preference number: 6 (lower is better) Translates to: IQTPPGHPDCTC*ASSPVCRCSEP Trigger: CGGCTCTGAGCACCTACACACCGGAGAACTTGCTCAACAAGTGCAGTCCGGGTGACCTGGTGGAGTTTGTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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| CDS GCA 72 bp | GAGCCGCCGATCCTGGCGCGAAGCTTTTCTGATAGATaGACTCATCACGATAAAACACCGAGCATTCCACCT | + |
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Preference number: 6 (lower is better) Translates to: EPPILARSFSDR*THHDKTPSIPP Trigger: AGGTGGAATGCTCGGTGTTTTATCGTGATGAGTGCATCTATCAGAAAAGCTTCGCGCCAGGATCGGCGGCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100635.5 |
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