RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LPIN2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024052

Ensembl transcript IDs: ENSMUST00000126681.8, ENSMUST00000129635.8, ENSMUST00000135589.8, ENSMUST00000154507.8, ENSMUST00000156570.8

Found 352 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GTGACCTTGGTGGACTCTGGGAACCCGCCCCACGTCCACTCCATGTaGGGCTCAGATCTGAGGAGGCTCTCAGATGGCTTCACCTCCAGC +
Preference number: 1 (lower is better)
Translates to: VTLVDSGNPPHVHSM*GSDLRRLSDGFTSS
Trigger: GCTGGAGGTGAAGCCATCTGAGAGCCTCCTCAGATCTGAGCCGCACATGGAGTGGACGTGGGGCGGGTTCCCAGAGTCCACCAAGGTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR TCA 90 bp AGTGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGAAAGCAGGTTCCTaGCTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGGCCAGTGCCA +
Preference number: 1 (lower is better)
Translates to: SASFGSPSLFWKAGS*LSAPGSSSVRGPVP
Trigger: TGGCACTGGCCCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTCCAGAACAGGGACGGGGACCCGAAGCTGGCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR CCA 90 bp CGTTTCTTCTCTCAGATGATGGCTTTGAAGGGCACCTCAGAAGGCTaGACCCGCCCCACAGGCTGCAGGGAACAGAGGCTCCTGCTGCTC +
Preference number: 1 (lower is better)
Translates to: RFFSQMMALKGTSEG*TRPTGCREQRLLLL
Trigger: GAGCAGCAGGAGCCTCTGTTCCCTGCAGCCTGTGGGGCGGGTCCAGCCTTCTGAGGTGCCCTTCAAAGCCATCATCTGAGAGAAGAAACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR TCA 90 bp GAGACAGCATCAGAGGGCCTCGAGGCAAGATCGTCCCCTTATCATTaGCCCAGTGCAGATAACCACGGGTCATGTCGGCCATGCCGATGG +
Preference number: 1 (lower is better)
Translates to: ETASEGLEARSSPYH*PSADNHGSCRPCRW
Trigger: CCATCGGCATGGCCGACATGACCCGTGGTTATCTGCACTGGGTCAATGATAAGGGGACGATCTTGCCTCGAGGCCCTCTGATGCTGTCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR GCA 90 bp CCAGCTCAGAGTCACTCTTGGGGCACACAGCCTGAGGGTAGGTGCTaGAATCCTAACGTCCTAGGGAGGAGATCTGACGTCCTCTTCCGT +
Preference number: 1 (lower is better)
Translates to: PAQSHSWGTQPEGRC*NPNVLGRRSDVLFR
Trigger: ACGGAAGAGGACGTCAGATCTCCTCCCTAGGACGTTAGGATTGCAGCACCTACCCTCAGGCTGTGTGCCCCAAGAGTGACTCTGAGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR GCA 90 bp CCTCCAGCTCAGAGTCACTCTTGGGGCACACAGCCTGAGGGTAGGTaGTGCAATCCTAACGTCCTAGGGAGGAGATCTGACGTCCTCTTC +
Preference number: 1 (lower is better)
Translates to: PPAQSHSWGTQPEGR*CNPNVLGRRSDVLF
Trigger: GAAGAGGACGTCAGATCTCCTCCCTAGGACGTTAGGATTGCAGCACCTACCCTCAGGCTGTGTGCCCCAAGAGTGACTCTGAGCTGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR CCA 90 bp CCCACTCATCAATGTGCAGGGACGAGTGTCGCGCTAACAGACACGTaGACAGAAAGACCAGCCATCACTCTGCACAGGCCAGGAGACCCA +
Preference number: 1 (lower is better)
Translates to: PTHQCAGTSVALTDT*TERPAITLHRPGDP
Trigger: TGGGTCTCCTGGCCTGTGCAGAGTGATGGCTGGTCTTTCTGTCCACGTGTCTGTTAGCGCGACACTCGTCCCTGCACATTGATGAGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR CCA 90 bp TCTAACGCAGGTCCAGGGCCCCTTATTACTCTAAGTGCTGAGTGGTaGCCTAGGAAGCTGAAAGAAGGTGGCAGTGCCAGCTTCGGGTCC +
Preference number: 1 (lower is better)
Translates to: SNAGPGPLITLSAEW*PRKLKEGGSASFGS
Trigger: GGACCCGAAGCTGGCACTGCCACCTTCTTTCAGCTTCCTAGGCCACCACTCAGCACTTAGAGTAATAAGGGGCCCTGGACCTGCGTTAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 90 bp CAGTTTTGCTATCTGGTCCGAGGAGAGTCGGAGAGACTTCTTATATaGGGCCGTCCCACAGTGACTCAGTGTCTCTACGGTGATGGGGTC +
Preference number: 1 (lower is better)
Translates to: QFCYLVRGESERLLI*GRPTVTQCLYGDGV
Trigger: GACCCCATCACCGTAGAGACACTGAGTCACTGTGGGACGGCCTCATATAAGAAGTCTCTCCGACTCTCCTCGGACCAGATAGCAAAACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR GCA 90 bp CAGGTGACAGTGTCAGAGAACAGGACTCCCAGGACCCCAGGCAACTaGCCTTCTACACTTCTGAGAAGCCACTGCCTTCTTTGTGATTCA +
Preference number: 1 (lower is better)
Translates to: QVTVSENRTPRTPGN*PSTLLRSHCLLCDS
Trigger: TGAATCACAAAGAAGGCAGTGGCTTCTCAGAAGTGTAGAAGGGCAGTTGCCTGGGGTCCTGGGAGTCCTGTTCTCTGACACTGTCACCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 90 bp AGAACAGGACTCCCAGGACCCCAGGCAACTGCCCTTCTACACTTCTaGGAAGCCACTGCCTTCTTTGTGATTCAAACCAAGGTCTCACCA +
Preference number: 1 (lower is better)
Translates to: RTGLPGPQATALLHF*EATAFFVIQTKVSP
Trigger: TGGTGAGACCTTGGTTTGAATCACAAAGAAGGCAGTGGCTTCTCAGAAGTGTAGAAGGGCAGTTGCCTGGGGTCCTGGGAGTCCTGTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR CCA 90 bp TCAGGAGCCTCTCTCTCCCAGGCCTCCATGACTGCATTACATGGTTaGAATCCAGATGACTGGTCAATGCCACTAGCCAAAGGCTTTCTC +
Preference number: 1 (lower is better)
Translates to: SGASLSQASMTALHG*NPDDWSMPLAKGFL
Trigger: GAGAAAGCCTTTGGCTAGTGGCATTGACCAGTCATCTGGATTCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGAGAGAGGCTCCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR CCA 90 bp GTTTCTTTTCTATCACTTCCCTGTGGAAGGCAGAGAACAAGCTGCTaGGAGACAGCATCAGAGGGCCTCGAGGCAAGATCGTCCCCTTAT +
Preference number: 1 (lower is better)
Translates to: VSFLSLPCGRQRTSC*ETASEGLEARSSPY
Trigger: ATAAGGGGACGATCTTGCCTCGAGGCCCTCTGATGCTGTCTCCCAGCAGCTTGTTCTCTGCCTTCCACAGGGAAGTGATAGAAAAGAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR TCA 90 bp TCCGAGGAGAGTCGGAGAGACTTCTTATATGAGGCCGTCCCACAGTaGCTCAGTGTCTCTACGGTGATGGGGTCAACTTTGATGCTTTCT +
Preference number: 1 (lower is better)
Translates to: SEESRRDFLYEAVPQ*LSVSTVMGSTLMLS
Trigger: AGAAAGCATCAAAGTTGACCCCATCACCGTAGAGACACTGAGTCACTGTGGGACGGCCTCATATAAGAAGTCTCTCCGACTCTCCTCGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR TCA 90 bp TCTCTCCCAGGCCTCCATGACTGCATTACATGGTTGGAATCCAGATaGCTGGTCAATGCCACTAGCCAAAGGCTTTCTCCTCAGCAAATA +
Preference number: 1 (lower is better)
Translates to: SLPGLHDCITWLESR*LVNATSQRLSPQQI
Trigger: TATTTGCTGAGGAGAAAGCCTTTGGCTAGTGGCATTGACCAGTCATCTGGATTCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 90 bp CTCTACGGTGATGGGGTCAACTTTGATGCTTTCTTCCAACTCCTGTaGCCCCTCGTCACTAGAAGTGTCATTCTCTGCAGGTCAAAGAGA +
Preference number: 1 (lower is better)
Translates to: LYGDGVNFDAFFQLL*PLVTRSVILCRSKR
Trigger: TCTCTTTGACCTGCAGAGAATGACACTTCTAGTGACGAGGGGTCACAGGAGTTGGAAGAAAGCATCAAAGTTGACCCCATCACCGTAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR GCA 90 bp TCAAGAGGTGATTCGGGAAGCTCAGTAGACGCTGCATCACTCAGTTaGTTACACAGGGCTCTAGGTTTGGGTTTCACTATGGTACAGGTA +
Preference number: 1 (lower is better)
Translates to: SRGDSGSSVDAASLS*LHRALGLGFTMVQV
Trigger: TACCTGTACCATAGTGAAACCCAAACCTAGAGCCCTGTGTAAGCAACTGAGTGATGCAGCGTCTACTGAGCTTCCCGAATCACCTCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR GCA 90 bp TTTTCAGTTTCTGGTTTCTTCCTTTTTAGATGTGCAGCTGCGTGGTaGCCAGTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTA +
Preference number: 1 (lower is better)
Translates to: FSVSGFFLFRCAAAW*PVHNSTEARESPQV
Trigger: TACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTACTGGGCACCACGCAGCTGCACATCTAAAAAGGAAGAAACCAGAAACTGAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR CCA 90 bp TCTTTTTCAGTTTCTGGTTTCTTCCTTTTTAGATGTGCAGCTGCGTaGTGCCCAGTACACAACTCCACAGAAGCACGTGAGAGCCCACAA +
Preference number: 1 (lower is better)
Translates to: SFSVSGFFLFRCAAA*CPVHNSTEARESPQ
Trigger: TTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTACTGGGCACCACGCAGCTGCACATCTAAAAAGGAAGAAACCAGAAACTGAAAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 90 bp TATTCTACCAAGCTCAGGTTAAGTGCACAATTCTTACTGTGGTGGTaGTGGCTTAGGCTTCAAATCTCCCGTGGCTGCTTTAGTAGAGTC +
Preference number: 1 (lower is better)
Translates to: YSTKLRLSAQFLLWW*WLRLQISRGCFSRV
Trigger: GACTCTACTAAAGCAGCCACGGGAGATTTGAAGCCTAAGCCATCACCACCACAGTAAGAATTGTGCACTTAACCTGAGCTTGGTAGAATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR TCA 90 bp TTCTCCTCAGCAAATATGAAGCCCAGACTTTCAAAAATCCTGTTCTaGAATAATCTGCCCCAAGGGCCACTTAAGTCAGGTGACAGTGTC +
Preference number: 1 (lower is better)
Translates to: FSSANMKPRLSKILF*NNLPQGPLKSGDSV
Trigger: GACACTGTCACCTGACTTAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTCTGGGCTTCATATTTGCTGAGGAGAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 90 bp TATGAGGCTGTCTTCACTGGGAATTACCCTGAAATGTGTGTTCTCTaGTGGTGTAATCGTAGCTGTCCTTGGATGATAGTCATACCGTTC +
Preference number: 1 (lower is better)
Translates to: YEAVFTGNYPEMCVL*WCNRSCPWMIVIPF
Trigger: GAACGGTATGACTATCATCCAAGGACAGCTACGATTACACCATCAGAGAACACACATTTCAGGGTAATTCCCAGTGAAGACAGCCTCATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR GCA 90 bp TTTCTTTTTCCAACTGACTATGCAGATGGGTTAGACTACAGGAACTaGAGTACTGATCATATGGTTACACATGCATGCTCCAGGTCCACG +
Preference number: 1 (lower is better)
Translates to: FLFPTDYADGLDYRN*STDHMVTHACSRST
Trigger: CGTGGACCTGGAGCATGCATGTGTAACCATATGATCAGTACTGCAGTTCCTGTAGTCTAACCCATCTGCATAGTCAGTTGGAAAAAGAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR TCA 90 bp TTAATTAAACATTGTTACCAAGGTCTCTGCATTCAACTGCAATACTaGAATGAGGCAAGGACACTCAACTCTCCAATCTGGAAAATAGCC +
Preference number: 1 (lower is better)
Translates to: LIKHCYQGLCIQLQY*NEARTLNSPIWKIA
Trigger: GGCTATTTTCCAGATTGGAGAGTTGAGTGTCCTTGCCTCATTTCAGTATTGCAGTTGAATGCAGAGACCTTGGTAACAATGTTTAATTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR GCA 90 bp CACTTAACGAGGCCAGTGTCTGAGGCCGCCAGGGAGGTGCGGGGGTACCCCACACAGATGGGCTCACGGTaGTGGCACATGAAGCAGCTG +
Preference number: 2 (lower is better)
Translates to: HLTRPVSEAAREVRGYPTQMGSR*WHMKQL
Trigger: CAGCTGCTTCATGTGCCAGCACCGTGAGCCCATCTG...TGTGGGGTACCCCCGCACCTCCCTGGCGGCCTCAGACACTGGCCTCGTTAAGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR GCA 90 bp TGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGAAAGCAGGTTCCTGACTGTCAGCGAGGGCCAGTGCCAGTaGCCCCCATCTTGCCATCGA +
Preference number: 2 (lower is better)
Translates to: CQLRVPVPVLESRFLTVSEGQCQ*PPSCHR
Trigger: TCGATGGCAAGATGGGGGGCACTGGCACTGGCCCTC...GCTGACAGTCAGGAACCTGCTTTCCAGAACAGGGACGGGGACCCGAAGCTGGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp ATGGCTTTGAAGGGCACCTCAGAAGGCTGGACCCGCCCCACAGGCTGCAGGGAAGGTGGCCTAGGAAGCTaGAAGAAGGTGGCAGTGCCA +
Preference number: 2 (lower is better)
Translates to: MALKGTSEGWTRPTGCREGGLGS*KKVAVP
Trigger: TGGCACTGCCACCTTCTTTCAGCTTCCTAGGCCACC...TTCCCTGCAGCCTGTGGGGCGGGTCCAGCCTTCTGAGGTGCCCTTCAAAGCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp GAGTGTCGCGCTAACAGACACGTGGACAGAAAGACCAGCCATCACTCTGCACAGTGCGGCGGGGACAGGTaGGGAGACGCTGCTGCTAGG +
Preference number: 2 (lower is better)
Translates to: ECRANRHVDRKTSHHSAQCGGDR*GDAAAR
Trigger: CCTAGCAGCAGCGTCTCCTCACCTGTCCCCGCCGCA...CTGTGCAGAGTGATGGCTGGTCTTTCTGTCCACGTGTCTGTTAGCGCGACACTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR GCA 90 bp GGCTTTGAAGGGCACCTCAGAAGGCTGGACCCGCCCCACAGGCTGCAGGGAACAGAAACATCAGCACAGTaGCGGGAGCCTGCGTTGCTT +
Preference number: 2 (lower is better)
Translates to: GFEGHLRRLDPPHRLQGTETSAQ*REPALL
Trigger: AAGCAACGCAGGCTCCCGGCACTGTGCTGATGTTTC...TGTTCCCTGCAGCCTGTGGGGCGGGTCCAGCCTTCTGAGGTGCCCTTCAAAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR GCA 90 bp TTAGCAGCTGGTTTGGGTTCTGAGGGAGCCTCTGCTGATGGGCTGGGAACAGGGCACGTCCACTCCATGTaGGGCTCAGATCTGAGGAGG +
Preference number: 2 (lower is better)
Translates to: LAAGLGSEGASADGLGTGHVHSM*GSDLRR
Trigger: CCTCCTCAGATCTGAGCCGCACATGGAGTGGACGTG...CCCTGTTCCCAGCCCATCAGCAGAGGCTCCCTCAGAACCCAAACCAGCTGCTAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR-3UTR CCA 90 bp CTGAGGGAGCCTCTGCTGATGGGCTGGGAACAGGGTCTGCATCTAATAACGATGGACCTTGGTGGACTCTaGGAACCCGCCCCACGTCCA +
Preference number: 2 (lower is better)
Translates to: LREPLLMGWEQGLHLITMDLGGL*EPAPRP
Trigger: TGGACGTGGGGCGGGTTCCCAGAGTCCACCAAGGTC...CATCGTTATTAGATGCAGACCCTGTTCCCAGCCCATCAGCAGAGGCTCCCTCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR-3UTR GCA 90 bp CGAACTCAGATGGATTTCTTAGTAACTGCCCACACCCAGCTGGGCAAGGCTCTGGAGGGCCAGTGCCAGTaGCCCCCATCTTGCCATCGA +
Preference number: 2 (lower is better)
Translates to: RTQMDFLVTAHTQLGKALEGQCQ*PPSCHR
Trigger: TCGATGGCAAGATGGGGGGCACTGGCACTGGCCCTC...CAGAGCCTTGCCCAGCTGGGTGTGGGCAGTTACTAAGAAATCCATCTGAGTTCG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp CATAACTCTCCCTGGTGCCATCTGCTCCAACATTTGACAAGAGCACTTAACGAGTGCGGCGGGGACAGGTaGGGAGACGCTGCTGCTAGG +
Preference number: 2 (lower is better)
Translates to: HNSPWCHLLQHLTRALNECGGDR*GDAAAR
Trigger: CCTAGCAGCAGCGTCTCCTCACCTGTCCCCGCCGCA...CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp GGCTTTGAAGGGCACCTCAGAAGGCTGGACCCGCCCCACAGGCTGCAGGGAACATTCTTACTGTGGTGGTaGTGGCTTAGGCTTCAAATC +
Preference number: 2 (lower is better)
Translates to: GFEGHLRRLDPPHRLQGTFLLWW*WLRLQI
Trigger: GATTTGAAGCCTAAGCCATCACCACCACAGTAAGAA...TGTTCCCTGCAGCCTGTGGGGCGGGTCCAGCCTTCTGAGGTGCCCTTCAAAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR GCA 90 bp CTCATCTGCACTATCAACTGCATGAGGGTGAGTCAGAGTGATGGGCTGCTGCTGGAAAGAAGGTGGCAGTaGCAGCTTCGGGTCCCCGTC +
Preference number: 2 (lower is better)
Translates to: LICTINCMRVSQSDGLLLERRWQ*QLRVPV
Trigger: GACGGGGACCCGAAGCTGGCACTGCCACCTTCTTTC...CAGCAGCAGCCCATCACTCTGACTCACCCTCATGCAGTTGATAGTGCAGATGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR GCA 90 bp CACTTAACGAGGCCAGTGTCTGAGGCCGCCAGGGAGGTGCGGGGGTACCCCACACTTCTGAGAAGCCACTaGCTTCTTTGTGATTCAAAC +
Preference number: 2 (lower is better)
Translates to: HLTRPVSEAAREVRGYPTLLRSH*LLCDSN
Trigger: GTTTGAATCACAAAGAAGGCAGTGGCTTCTCAGAAG...TGTGGGGTACCCCCGCACCTCCCTGGCGGCCTCAGACACTGGCCTCGTTAAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp ATGGCTTTGAAGGGCACCTCAGAAGGCTGGACCCGCCCCACAGGCTGCAGGGAAACTGCAATACTGAAATaGGGCAAGGACACTCAACTC +
Preference number: 2 (lower is better)
Translates to: MALKGTSEGWTRPTGCRETAILK*GKDTQL
Trigger: GAGTTGAGTGTCCTTGCCTCATTTCAGTATTGCAGT...TTCCCTGCAGCCTGTGGGGCGGGTCCAGCCTTCTGAGGTGCCCTTCAAAGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR GCA 90 bp GGTTCTGAGGGAGCCTCTGCTGATGGGCTGGGAACAGGGTCTGCATCTAATAACCCTGAGGGTAGGTGCTaGAATCCTAACGTCCTAGGG +
Preference number: 2 (lower is better)
Translates to: GSEGASADGLGTGSASNNPEGRC*NPNVLG
Trigger: CCCTAGGACGTTAGGATTGCAGCACCTACCCTCAGG...GTTATTAGATGCAGACCCTGTTCCCAGCCCATCAGCAGAGGCTCCCTCAGAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR-3UTR TCA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTGGTGGCCTAGGAAGCTaGAAGAAGGTGGCAGTGCCA +
Preference number: 2 (lower is better)
Translates to: VHNSTEARESPQVKECRLGGLGS*KKVAVP
Trigger: TGGCACTGCCACCTTCTTTCAGCTTCCTAGGCCACC...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp CATAACTCTCCCTGGTGCCATCTGCTCCAACATTTGACAAGAGCACTTAACGAGGGCTGCTGCTGCTGCTaGGGTGTGGCTCTCAACAGG +
Preference number: 2 (lower is better)
Translates to: HNSPWCHLLQHLTRALNEGCCCC*GVALNR
Trigger: CCTGTTGAGAGCCACACCTCAGCAGCAGCAGCAGCC...CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp GAGTGTCGCGCTAACAGACACGTGGACAGAAAGACCAGCCATCACTCTGCACAGGCCCTTCTACACTTCTaGGAAGCCACTGCCTTCTTT +
Preference number: 2 (lower is better)
Translates to: ECRANRHVDRKTSHHSAQALLHF*EATAFF
Trigger: AAAGAAGGCAGTGGCTTCTCAGAAGTGTAGAAGGGC...CTGTGCAGAGTGATGGCTGGTCTTTCTGTCCACGTGTCTGTTAGCGCGACACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp CGAACTCAGATGGATTTCTTAGTAACTGCCCACACCCAGCTGGGCAAGGCTCTGTCTCCCAGGCCTCCATaGCTGCATTACATGGTTGGA +
Preference number: 2 (lower is better)
Translates to: RTQMDFLVTAHTQLGKALSPRPP*LHYMVG
Trigger: TCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGA...CAGAGCCTTGCCCAGCTGGGTGTGGGCAGTTACTAAGAAATCCATCTGAGTTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp CATAACTCTCCCTGGTGCCATCTGCTCCAACATTTGACAAGAGCACTTAACGAGGAGGGTGAGTCAGAGTaGTGGGCTGCTGCTGCTGCT +
Preference number: 2 (lower is better)
Translates to: HNSPWCHLLQHLTRALNEEGESE*WAAAAA
Trigger: AGCAGCAGCAGCAGCCCATCACTCTGACTCACCCTC...CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTGAAGCTGAAAGAAGGTaGCAGTGCCAGCTTCGGGTC +
Preference number: 2 (lower is better)
Translates to: VHNSTEARESPQVKECRLEAERR*QCQLRV
Trigger: GACCCGAAGCTGGCACTGCCACCTTCTTTCAGCTTC...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp TCAAGAGGTGATTCGGGAAGCTCAGTAGACGCTGCATCACTCAGTTGCTTACACGCTCAGAGTCACTCTTaGGGCACACAGCCTGAGGGT +
Preference number: 2 (lower is better)
Translates to: SRGDSGSSVDAASLSCLHAQSHS*GTQPEG
Trigger: ACCCTCAGGCTGTGTGCCCCAAGAGTGACTCTGAGC...GTGTAAGCAACTGAGTGATGCAGCGTCTACTGAGCTTCCCGAATCACCTCTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR-3UTR CCA 90 bp GAGTGTCGCGCTAACAGACACGTGGACAGAAAGACCAGCCATCACTCTGCACAGCAGAGGGAACACTTGTaGGAAACATCAGCACAGTGC +
Preference number: 2 (lower is better)
Translates to: ECRANRHVDRKTSHHSAQQREHL*ETSAQC
Trigger: GCACTGTGCTGATGTTTCCCACAAGTGTTCCCTCTG...CTGTGCAGAGTGATGGCTGGTCTTTCTGTCCACGTGTCTGTTAGCGCGACACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp CTTAAGTCAGGTGACAGTGTCAGAGAACAGGACTCCCAGGACCCCAGGCAACTGCCACTGCCTTCTTTGTaGTTCAAACCAAGGTCTCAC +
Preference number: 2 (lower is better)
Translates to: LKSGDSVREQDSQDPRQLPLPSL*FKPRSH
Trigger: GTGAGACCTTGGTTTGAATCACAAAGAAGGCAGTGG...CAGTTGCCTGGGGTCCTGGGAGTCCTGTTCTCTGACACTGTCACCTGACTTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp ACATTTCTTTTTCCAACTGACTATGCAGATGGGTTAGACTACAGGAACTGCAGTAACGAGGCCAGTGTCTaGGGCCGCCAGGGAGGTGCG +
Preference number: 2 (lower is better)
Translates to: TFLFPTDYADGLDYRNCSNEASV*GRQGGA
Trigger: CGCACCTCCCTGGCGGCCTCAGACACTGGCCTCGTT...ACTGCAGTTCCTGTAGTCTAACCCATCTGCATAGTCAGTTGGAAAAAGAAATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR GCA 90 bp CTTCATCAGCTGAATGGAATCATTAGCAGGGAACTCTTTCCTCTGCCTTCAGGTGAAAGAAGGTGGCAGTaGCAGCTTCGGGTCCCCGTC +
Preference number: 2 (lower is better)
Translates to: LHQLNGIISRELFPLPSGERRWQ*QLRVPV
Trigger: GACGGGGACCCGAAGCTGGCACTGCCACCTTCTTTC...ACCTGAAGGCAGAGGAAAGAGTTCCCTGCTAATGATTCCATTCAGCTGATGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp AGCCCAGACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTACCATGCTGGGGCAGATaGGCTCACGGTGCTGGCACA +
Preference number: 2 (lower is better)
Translates to: SPDFQKSCSEIICPKGHLPCWGR*AHGAGT
Trigger: TGTGCCAGCACCGTGAGCCCATCTGCCCCAGCATGG...TAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTCTGGGCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp AACTCCGACTTGTGTGTAAGCATAGACATCGTTGGGACGGTTTCCAAAGGCAGCATTAGCGCATGGGGTTaGGGATGTAAGCCCAGGAGC +
Preference number: 2 (lower is better)
Translates to: NSDLCVSIDIVGTVSKGSISAWG*GCKPRS
Trigger: GCTCCTGGGCTTACATCCCCAACCCCATGCGCTAAT...GCTGCCTTTGGAAACCGTCCCAACGATGTCTATGCTTACACACAAGTCGGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR-3UTR CCA 90 bp AACTCCGACTTGTGTGTAAGCATAGACATCGTTGGGACGGTTTCCAAAGGCAGCACTGCCATTAGCGCATaGGGTTGGGGATGTAAGCCC +
Preference number: 2 (lower is better)
Translates to: NSDLCVSIDIVGTVSKGSTAISA*GWGCKP
Trigger: GGGCTTACATCCCCAACCCCATGCGCTAATGGCAGT...GCTGCCTTTGGAAACCGTCCCAACGATGTCTATGCTTACACACAAGTCGGAGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR-3UTR TCA 90 bp CAGTTTCTGGTTTCTTCCTTTTTAGATGTGCAGCTGCGTGGTGCCCAGTACACATGGAAAGCAGGTTCCTaGCTGTCAGCTCCTGGGTCT +
Preference number: 2 (lower is better)
Translates to: QFLVSSFLDVQLRGAQYTWKAGS*LSAPGS
Trigger: AGACCCAGGAGCTGACAGTCAGGAACCTGCTTTCCA...TGTGTACTGGGCACCACGCAGCTGCACATCTAAAAAGGAAGAAACCAGAAACTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp CATAACTCTCCCTGGTGCCATCTGCTCCAACATTTGACAAGAGCACTTAACGAGGAAGCTGAAAGAAGGTaGCAGTGCCAGCTTCGGGTC +
Preference number: 2 (lower is better)
Translates to: HNSPWCHLLQHLTRALNEEAERR*QCQLRV
Trigger: GACCCGAAGCTGGCACTGCCACCTTCTTTCAGCTTC...CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp AGCTCGGGTCCTGGTCCACTCTACATTGTTTTAGCAGCTTTTGTTCTACGTTACCTTTACAGCCCATGCTaGGGCAGATGGGCTCACGGT +
Preference number: 2 (lower is better)
Translates to: SSGPGPLYIVLAAFVLRYLYSPC*GRWAHG
Trigger: ACCGTGAGCCCATCTGCCCCAGCATGGGCTGTAAAG...GTAACGTAGAACAAAAGCTGCTAAAACAATGTAGAGTGGACCAGGACCCGAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp GCATTACATGGTTGGAATCCAGATGACTGGTCAATGCCACTAGCCAAAGGCTTTGCTGTCCTAGTTCAGTaGGTGAGAGTGGAGGCATCC +
Preference number: 2 (lower is better)
Translates to: ALHGWNPDDWSMPLAKGFAVLVQ*VRVEAS
Trigger: GGATGCCTCCACTCTCACTCACTGAACTAGGACAGC...AAAGCCTTTGGCTAGTGGCATTGACCAGTCATCTGGATTCCAACCATGTAATGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp AGCCCAGACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTAATGGGCTCACGGTGCTaGCACATGAAGCAGCTGTCC +
Preference number: 2 (lower is better)
Translates to: SPDFQKSCSEIICPKGHLMGSRC*HMKQLS
Trigger: GGACAGCTGCTTCATGTGCCAGCACCGTGAGCCCAT...TAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTCTGGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp GTCTGGAACTCCGACTTGTGTGTAAGCATAGACATCGTTGGGACGGTTTCCAAAGTCTTTACCCAGCTGTaGGAGAATCTGCCCCAAAGC +
Preference number: 2 (lower is better)
Translates to: VWNSDLCVSIDIVGTVSKVFTQL*ENLPQS
Trigger: GCTTTGGGGCAGATTCTCCCACAGCTGGGTAAAGAC...TTTGGAAACCGTCCCAACGATGTCTATGCTTACACACAAGTCGGAGTTCCAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR-3UTR TCA 90 bp CATAACTCTCCCTGGTGCCATCTGCTCCAACATTTGACAAGAGCACTTAACGAGGCCCTTCTACACTTCTaGGAAGCCACTGCCTTCTTT +
Preference number: 2 (lower is better)
Translates to: HNSPWCHLLQHLTRALNEALLHF*EATAFF
Trigger: AAAGAAGGCAGTGGCTTCTCAGAAGTGTAGAAGGGC...CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp ACTTCTCTTATGAGGCTGTCTTCACTGGGAATTACCCTGAAATGTGTGTTCTCTTGTGCGGCTCAGATCTaGGGAGGCTCTCAGATGGCT +
Preference number: 2 (lower is better)
Translates to: TSLMRLSSLGITLKCVFSCAAQI*GGSQMA
Trigger: AGCCATCTGAGAGCCTCCTCAGATCTGAGCCGCACA...AGAGAACACACATTTCAGGGTAATTCCCAGTGAAGACAGCCTCATAAGAGAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR-3UTR GCA 90 bp AGCTCGGGTCCTGGTCCACTCTACATTGTTTTAGCAGCTTTTGTTCTACGTTACACTGGGTGGCTGGTCTaGCATAGTGTCTCTTCAGCA +
Preference number: 2 (lower is better)
Translates to: SSGPGPLYIVLAAFVLRYTGWLV*HSVSSA
Trigger: TGCTGAAGAGACACTATGGCAGACCAGCCACCCAGT...GTAACGTAGAACAAAAGCTGCTAAAACAATGTAGAGTGGACCAGGACCCGAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR GCA 90 bp AGTCTGGAACTCCGACTTGTGTGTAAGCATAGACATCGTTGGGACGGTTTCCAAAGCTGTGGGAGAATCTaGCCCAAAGCATCAGACTTG +
Preference number: 2 (lower is better)
Translates to: SLELRLVCKHRHRWDGFQSCGRI*PKASDL
Trigger: CAAGTCTGATGCTTTGGGGCAGATTCTCCCACAGCT...TTGGAAACCGTCCCAACGATGTCTATGCTTACACACAAGTCGGAGTTCCAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR-3UTR TCA 90 bp GACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTAAGTCAGGCTGTCCTAGTTCAGTaGGTGAGAGTGGAGGCATCC +
Preference number: 2 (lower is better)
Translates to: DFQKSCSEIICPKGHLSQAVLVQ*VRVEAS
Trigger: GGATGCCTCCACTCTCACTCACTGAACTAGGACAGC...CTGACTTAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp AACTGGCGAGAACGTCACATGAACATAGCCAAGTTTCCCTACTACCTAACACAACTGACTGTCAGCTCCTaGGTCTTCCTCTGTAAGAGG +
Preference number: 2 (lower is better)
Translates to: NWRERHMNIAKFPYYLTQLTVSS*VFLCKR
Trigger: CCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAG...TTGTGTTAGGTAGTAGGGAAACTTGGCTATGTTCATGTGACGTTCTCGCCAGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp CTTCATCAGCTGAATGGAATCATTAGCAGGGAACTCTTTCCTCTGCCTTCAGGTGGACATAACTCTCCCTaGTGCCATCTGCTCCAACAT +
Preference number: 2 (lower is better)
Translates to: LHQLNGIISRELFPLPSGGHNSP*CHLLQH
Trigger: ATGTTGGAGCAGATGGCACCAGGGAGAGTTATGTCC...ACCTGAAGGCAGAGGAAAGAGTTCCCTGCTAATGATTCCATTCAGCTGATGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR CAA 90 bp TCAGTAGACGCTGCATCACTCAGTTGCTTACACAGGGCTCTAGGTTaGGGTTTCACTATGGTACAGGTAGTATCTTCAACAGTAGCATCC +
Preference number: 2 (lower is better)
Translates to: SVDAASLSCLHRALG*GFTMVQVVSSTVAS
Trigger: GGATGCTACTGTTGAAGATACTACCTGTACCATAGTGAAACCCAAACCTAGAGCCCTGTGTAAGCAACTGAGTGATGCAGCGTCTACTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR-3UTR TCA 90 bp ACATTTCTTTTTCCAACTGACTATGCAGATGGGTTAGACTACAGGAACTGCAGTCACGGTGCTGGCACATaGAGCAGCTGTCCTAGTTCA +
Preference number: 2 (lower is better)
Translates to: TFLFPTDYADGLDYRNCSHGAGT*SSCPSS
Trigger: TGAACTAGGACAGCTGCTTCATGTGCCAGCACCGTG...ACTGCAGTTCCTGTAGTCTAACCCATCTGCATAGTCAGTTGGAAAAAGAAATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp GCATTACATGGTTGGAATCCAGATGACTGGTCAATGCCACTAGCCAAAGGCTTTCTCTGGAGAAAGCCCTaGTTAGAGAGAGAAACGATC +
Preference number: 2 (lower is better)
Translates to: ALHGWNPDDWSMPLAKGFLWRKP*LERETI
Trigger: GATCGTTTCTCTCTCTAACCAGGGCTTTCTCCAGAG...AAAGCCTTTGGCTAGTGGCATTGACCAGTCATCTGGATTCCAACCATGTAATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp TTTTCAACTTCTCTTATGAGGCTGTCTTCACTGGGAATTACCCTGAAATGTGTGGAGGAGGCTCTCAGATaGCTTCACCTCCAGCTCAGA +
Preference number: 2 (lower is better)
Translates to: FSTSLMRLSSLGITLKCVEEALR*LHLQLR
Trigger: TCTGAGCTGGAGGTGAAGCCATCTGAGAGCCTCCTC...CACACATTTCAGGGTAATTCCCAGTGAAGACAGCCTCATAAGAGAAGTTGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR-3UTR TCA 90 bp CTTCATCAGCTGAATGGAATCATTAGCAGGGAACTCTTTCCTCTGCCTTCAGGTATCTGCTCCAACATTTaGCAAGAGCACTTAACGAGG +
Preference number: 2 (lower is better)
Translates to: LHQLNGIISRELFPLPSGICSNI*QEHLTR
Trigger: CCTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGAT...ACCTGAAGGCAGAGGAAAGAGTTCCCTGCTAATGATTCCATTCAGCTGATGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp GCTCTAGGTTTGGGTTTCACTATGGTACAGGTAGTATCTTCAACAGTAGCATCCAATCGTAGCTGTCCTTaGATGATAGTCATACCGTTC +
Preference number: 2 (lower is better)
Translates to: ALGLGFTMVQVVSSTVASNRSCP*MIVIPF
Trigger: GAACGGTATGACTATCATCCAAGGACAGCTACGATT...GGATGCTACTGTTGAAGATACTACCTGTACCATAGTGAAACCCAAACCTAGAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR-3UTR CCA 90 bp AACTGGCGAGAACGTCACATGAACATAGCCAAGTTTCCCTACTACCTAACACAACTCAACTCTCCAATCTaGAAAATAGCCACCCCTTTT +
Preference number: 2 (lower is better)
Translates to: NWRERHMNIAKFPYYLTQLNSPI*KIATPF
Trigger: AAAAGGGGTGGCTATTTTCCAGATTGGAGAGTTGAG...TTGTGTTAGGTAGTAGGGAAACTTGGCTATGTTCATGTGACGTTCTCGCCAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR GCA 90 bp GCATTACATGGTTGGAATCCAGATGACTGGTCAATGCCACTAGCCAAAGGCTTTTTTTGTGTAGCAATGTaGTGGTCTATTCTTTTTCAG +
Preference number: 2 (lower is better)
Translates to: ALHGWNPDDWSMPLAKGFFCVAM*WSILFQ
Trigger: CTGAAAAAGAATAGACCAGCACATTGCTACACAAAA...AAAGCCTTTGGCTAGTGGCATTGACCAGTCATCTGGATTCCAACCATGTAATGC
41% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR CCA 90 bp AACTCTTTACTTTTGTGTAGCAATGTGCTGGTCTATTCTTTTTCAGTTTCTGGTCTAAGTGCTGAGTGGTaGCCTAGGAAGCTGAAAGAA +
Preference number: 2 (lower is better)
Translates to: NSLLLCSNVLVYSFSVSGLSAEW*PRKLKE
Trigger: TTCTTTCAGCTTCCTAGGCCACCACTCAGCACTTAG...ACCAGAAACTGAAAAAGAATAGACCAGCACATTGCTACACAAAAGTAAAGAGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR TCA 90 bp TTCACTATGGTACAGGTAGTATCTTCAACAGTAGCATCCTTTTCAACTTCTCTTGAAATGTGTGTTCTCTaGTGGTGTAATCGTAGCTGT +
Preference number: 2 (lower is better)
Translates to: FTMVQVVSSTVASFSTSLEMCVL*WCNRSC
Trigger: ACAGCTACGATTACACCATCAGAGAACACACATTTC...AAGAGAAGTTGAAAAGGATGCTACTGTTGAAGATACTACCTGTACCATAGTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR GCA 72 bp AAGGGCACCTCAGAAGGCTGGACCCGCCCCACAGGCTaGAGGGAACAGAGGCTCCTGCTGCTCAGCTCGGGT +
Preference number: 3 (lower is better)
Translates to: KGTSEGWTRPTG*REQRLLLLSSG
Trigger: ACCCGAGCTGAGCAGCAGGAGCCTCTGTTCCCTGCAGCCTGTGGGGCGGGTCCAGCCTTCTGAGGTGCCCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR GCA 72 bp GGACCCGCCCCACAGGCTGCAGGGAACAGAGGCTCCTaGTGCTCAGCTCGGGTCCTGGTCCACTCTACATTG +
Preference number: 3 (lower is better)
Translates to: GPAPQAAGNRGS*CSARVLVHSTL
Trigger: CAATGTAGAGTGGACCAGGACCCGAGCTGAGCAGCAGGAGCCTCTGTTCCCTGCAGCCTGTGGGGCGGGTCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR GCA 72 bp GTGGACTCTGGGAACCCGCCCCACGTCCACTCCATGTaGGGCTCAGATCTGAGGAGGCTCTCAGATGGCTTC +
Preference number: 3 (lower is better)
Translates to: VDSGNPPHVHSM*GSDLRRLSDGF
Trigger: GAAGCCATCTGAGAGCCTCCTCAGATCTGAGCCGCACATGGAGTGGACGTGGGGCGGGTTCCCAGAGTCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR CCA 72 bp TCTCAGATGATGGCTTTGAAGGGCACCTCAGAAGGCTaGACCCGCCCCACAGGCTGCAGGGAACAGAGGCTC +
Preference number: 3 (lower is better)
Translates to: SQMMALKGTSEG*TRPTGCREQRL
Trigger: GAGCCTCTGTTCCCTGCAGCCTGTGGGGCGGGTCCAGCCTTCTGAGGTGCCCTTCAAAGCCATCATCTGAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR CCA 72 bp GTCATACCGTTCTCTTTTGGTGACCTTGGTGGACTCTaGGAACCCGCCCCACGTCCACTCCATGTGCGGCTC +
Preference number: 3 (lower is better)
Translates to: VIPFSFGDLGGL*EPAPRPLHVRL
Trigger: GAGCCGCACATGGAGTGGACGTGGGGCGGGTTCCCAGAGTCCACCAAGGTCACCAAAAGAGAACGGTATGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR-3UTR CAA 90 bp TTAGCAGCTGGTTTGGGTTCTGAGGGAGCCTCTGCTGATGGGCTGGGAACAGGGTCTCTTTTGGTGACCTaGGTGGACTCTGGGAACCCG +
Preference number: 3 (lower is better)
Translates to: LAAGLGSEGASADGLGTGSLLVT*VDSGNP
Trigger: CGGGTTCCCAGAGTCCACCAAGGTCACCAAAAGAGA...CCCTGTTCCCAGCCCATCAGCAGAGGCTCCCTCAGAACCCAAACCAGCTGCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR TCA 72 bp TTCGGGTCCCCGTCCCTGTTCTGGAAAGCAGGTTCCTaGCTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGG +
Preference number: 3 (lower is better)
Translates to: FGSPSLFWKAGS*LSAPGSSSVRG
Trigger: CCCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTCCAGAACAGGGACGGGGACCCGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 72 bp CCATGCTGGGGCAGATGGGCTCACGGTGCTGGCACATaGAGCAGCTGTCCTAGTTCAGTGAGTGAGAGTGGA +
Preference number: 3 (lower is better)
Translates to: PCWGRWAHGAGT*SSCPSSVSESG
Trigger: TCCACTCTCACTCACTGAACTAGGACAGCTGCTTCATGTGCCAGCACCGTGAGCCCATCTGCCCCAGCATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 72 bp ACTGCCCACACCCAGCTGGGCAAGGCTCTGCAGATCTaGGGACATAACTCTCCCTGGTGCCATCTGCTCCAA +
Preference number: 3 (lower is better)
Translates to: TAHTQLGKALQI*GHNSPWCHLLQ
Trigger: TTGGAGCAGATGGCACCAGGGAGAGTTATGTCCTCAGATCTGCAGAGCCTTGCCCAGCTGGGTGTGGGCAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR GCA 72 bp CCCACATCCCCACGAGGCCTCATCTGCACTATCAACTaGATGAGGGTGAGTCAGAGTGATGGGCTGCTGCTG +
Preference number: 3 (lower is better)
Translates to: PTSPRGLICTIN*MRVSQSDGLLL
Trigger: CAGCAGCAGCCCATCACTCTGACTCACCCTCATGCAGTTGATAGTGCAGATGAGGCCTCGTGGGGATGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR GCA 72 bp AGTGCCGGGAGCCTGCGTTGCTTCTCTGGGACTACGTaGCTCCAGGGCTTGCCACGGACAACTATGTTTCAA +
Preference number: 3 (lower is better)
Translates to: SAGSLRCFSGTT*LQGLPRTTMFQ
Trigger: TTGAAACATAGTTGTCCGTGGCAAGCCCTGGAGGCACGTAGTCCCAGAGAAGCAACGCAGGCTCCCGGCACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR CCA 72 bp CCTGTTCTGGAAAGCAGGTTCCTGACTGTCAGCTCCTaGGTCTTCCTCTGTAAGAGGGCCAGTGCCAGTGCC +
Preference number: 3 (lower is better)
Translates to: PVLESRFLTVSS*VFLCKRASASA
Trigger: GGCACTGGCACTGGCCCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTCCAGAACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 72 bp GCATGCTCCAGGTCCACGTGTACACCCCACACAGCCTaGCGGAGAGCAGCCATCAATTCTACAGCAGTGCAA +
Preference number: 3 (lower is better)
Translates to: ACSRSTCTPHTA*RRAAINSTAVQ
Trigger: TTGCACTGCTGTAGAATTGATGGCTGCTCTCCGTCAGGCTGTGTGGGGTGTACACGTGGACCTGGAGCATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR TCA 72 bp TCAGAGGGCCTCGAGGCAAGATCGTCCCCTTATCATTaGCCCAGTGCAGATAACCACGGGTCATGTCGGCCA +
Preference number: 3 (lower is better)
Translates to: SEGLEARSSPYH*PSADNHGSCRP
Trigger: TGGCCGACATGACCCGTGGTTATCTGCACTGGGTCAATGATAAGGGGACGATCTTGCCTCGAGGCCCTCTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR GCA 72 bp AGTCACTCTTGGGGCACACAGCCTGAGGGTAGGTGCTaGAATCCTAACGTCCTAGGGAGGAGATCTGACGTC +
Preference number: 3 (lower is better)
Translates to: SHSWGTQPEGRC*NPNVLGRRSDV
Trigger: GACGTCAGATCTCCTCCCTAGGACGTTAGGATTGCAGCACCTACCCTCAGGCTGTGTGCCCCAAGAGTGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR CCA 72 bp GGTCCAGGGCCCCTTATTACTCTAAGTGCTGAGTGGTaGCCTAGGAAGCTGAAAGAAGGTGGCAGTGCCAGC +
Preference number: 3 (lower is better)
Translates to: GPGPLITLSAEW*PRKLKEGGSAS
Trigger: GCTGGCACTGCCACCTTCTTTCAGCTTCCTAGGCCACCACTCAGCACTTAGAGTAATAAGGGGCCCTGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR CCA 72 bp GCAGGTCCAGGGCCCCTTATTACTCTAAGTGCTGAGTaGTGGCCTAGGAAGCTGAAAGAAGGTGGCAGTGCC +
Preference number: 3 (lower is better)
Translates to: AGPGPLITLSAE*WPRKLKEGGSA
Trigger: GGCACTGCCACCTTCTTTCAGCTTCCTAGGCCACCACTCAGCACTTAGAGTAATAAGGGGCCCTGGACCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR CCA 72 bp CAATGTGCAGGGACGAGTGTCGCGCTAACAGACACGTaGACAGAAAGACCAGCCATCACTCTGCACAGGCCA +
Preference number: 3 (lower is better)
Translates to: QCAGTSVALTDT*TERPAITLHRP
Trigger: TGGCCTGTGCAGAGTGATGGCTGGTCTTTCTGTCCACGTGTCTGTTAGCGCGACACTCGTCCCTGCACATTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR CAA 90 bp GTTCTGAGGGAGCCTCTGCTGATGGGCTGGGAACAGGGTCTGCATCTAATAACGCGCTGCATCACTCAGTaGCTTACACAGGGCTCTAGG +
Preference number: 3 (lower is better)
Translates to: VLREPLLMGWEQGLHLITRCITQ*LTQGSR
Trigger: CCTAGAGCCCTGTGTAAGCAACTGAGTGATGCAGCG...CGTTATTAGATGCAGACCCTGTTCCCAGCCCATCAGCAGAGGCTCCCTCAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR TCA 72 bp TGCGTGGTGCCCAGTACACAACTCCACAGAAGCACGTaGGAGCCCACAAGTAAAGGAGTGCAGGCTTTAGAG +
Preference number: 3 (lower is better)
Translates to: CVVPSTQLHRST*EPTSKGVQALE
Trigger: CTCTAAAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTACTGGGCACCACGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR GCA 72 bp AGGCTGACCTCGAACTCAGATGGATTTCTTAGTAACTaGCCACACCCAGCTGGGCAAGGCTCTGCAGATCTG +
Preference number: 3 (lower is better)
Translates to: RLTSNSDGFLSN*PHPAGQGSADL
Trigger: CAGATCTGCAGAGCCTTGCCCAGCTGGGTGTGGGCAGTTACTAAGAAATCCATCTGAGTTCGAGGTCAGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 72 bp CTCCCAGGACCCCAGGCAACTGCCCTTCTACACTTCTaGGAAGCCACTGCCTTCTTTGTGATTCAAACCAAG +
Preference number: 3 (lower is better)
Translates to: LPGPQATALLHF*EATAFFVIQTK
Trigger: CTTGGTTTGAATCACAAAGAAGGCAGTGGCTTCTCAGAAGTGTAGAAGGGCAGTTGCCTGGGGTCCTGGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 72 bp GACATAACTCTCCCTGGTGCCATCTGCTCCAACATTTaGCAAGAGCACTTAACGAGGCCAGTGTCTGAGGCC +
Preference number: 3 (lower is better)
Translates to: DITLPGAICSNI*QEHLTRPVSEA
Trigger: GGCCTCAGACACTGGCCTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 72 bp TATCTGGTCCGAGGAGAGTCGGAGAGACTTCTTATATaGGGCCGTCCCACAGTGACTCAGTGTCTCTACGGT +
Preference number: 3 (lower is better)
Translates to: YLVRGESERLLI*GRPTVTQCLYG
Trigger: ACCGTAGAGACACTGAGTCACTGTGGGACGGCCTCATATAAGAAGTCTCTCCGACTCTCCTCGGACCAGATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR CCA 72 bp CAGGGAACAGAGGCTCCTGCTGCTCAGCTCGGGTCCTaGTCCACTCTACATTGTTTTAGCAGCTTTTGTTCT +
Preference number: 3 (lower is better)
Translates to: QGTEAPAAQLGS*STLHCFSSFCS
Trigger: AGAACAAAAGCTGCTAAAACAATGTAGAGTGGACCAGGACCCGAGCTGAGCAGCAGGAGCCTCTGTTCCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR TCA 72 bp AGTCGGAGAGACTTCTTATATGAGGCCGTCCCACAGTaGCTCAGTGTCTCTACGGTGATGGGGTCAACTTTG +
Preference number: 3 (lower is better)
Translates to: SRRDFLYEAVPQ*LSVSTVMGSTL
Trigger: CAAAGTTGACCCCATCACCGTAGAGACACTGAGTCACTGTGGGACGGCCTCATATAAGAAGTCTCTCCGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR GCA 72 bp TCTGGTTTCTTCCTTTTTAGATGTGCAGCTGCGTGGTaGCCAGTACACAACTCCACAGAAGCACGTGAGAGC +
Preference number: 3 (lower is better)
Translates to: SGFFLFRCAAAW*PVHNSTEARES
Trigger: GCTCTCACGTGCTTCTGTGGAGTTGTGTACTGGGCACCACGCAGCTGCACATCTAAAAAGGAAGAAACCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 72 bp GGCCTCCATGACTGCATTACATGGTTGGAATCCAGATaGCTGGTCAATGCCACTAGCCAAAGGCTTTCTCCT +
Preference number: 3 (lower is better)
Translates to: GLHDCITWLESR*LVNATSQRLSP
Trigger: AGGAGAAAGCCTTTGGCTAGTGGCATTGACCAGTCATCTGGATTCCAACCATGTAATGCAGTCATGGAGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 72 bp GATGGGGTCAACTTTGATGCTTTCTTCCAACTCCTGTaGCCCCTCGTCACTAGAAGTGTCATTCTCTGCAGG +
Preference number: 3 (lower is better)
Translates to: DGVNFDAFFQLL*PLVTRSVILCR
Trigger: CCTGCAGAGAATGACACTTCTAGTGACGAGGGGTCACAGGAGTTGGAAGAAAGCATCAAAGTTGACCCCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR GCA 72 bp CCAGGCAACTGCCCTTCTACACTTCTGAGAAGCCACTaGCTTCTTTGTGATTCAAACCAAGGTCTCACCATC +
Preference number: 3 (lower is better)
Translates to: PGNCPSTLLRSH*LLCDSNQGLTI
Trigger: GATGGTGAGACCTTGGTTTGAATCACAAAGAAGGCAGTGGCTTCTCAGAAGTGTAGAAGGGCAGTTGCCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR GCA 72 bp TGCGTTGCTTCTCTGGGACTACGTGCCTCCAGGGCTTaGCACGGACAACTATGTTTCAAATGGTCTTTTTCT +
Preference number: 3 (lower is better)
Translates to: CVASLGLRASRA*HGQLCFKWSFS
Trigger: AGAAAAAGACCATTTGAAACATAGTTGTCCGTGGCAAGCCCTGGAGGCACGTAGTCCCAGAGAAGCAACGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR CCA 72 bp TCTCTCTCCCAGGCCTCCATGACTGCATTACATGGTTaGAATCCAGATGACTGGTCAATGCCACTAGCCAAA +
Preference number: 3 (lower is better)
Translates to: SLSQASMTALHG*NPDDWSMPLAK
Trigger: TTTGGCTAGTGGCATTGACCAGTCATCTGGATTCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR-3UTR CAA 90 bp CTTCATCAGCTGAATGGAATCATTAGCAGGGAACTCTTTCCTCTGCCTTCAGGTGAGCAGAGGGAACACTaGTGGGAAACATCAGCACAG +
Preference number: 3 (lower is better)
Translates to: LHQLNGIISRELFPLPSGEQREH*WETSAQ
Trigger: CTGTGCTGATGTTTCCCACAAGTGTTCCCTCTGCTC...ACCTGAAGGCAGAGGAAAGAGTTCCCTGCTAATGATTCCATTCAGCTGATGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR CCA 72 bp TCCATGACTGCATTACATGGTTGGAATCCAGATGACTaGTCAATGCCACTAGCCAAAGGCTTTCTCCTCAGC +
Preference number: 3 (lower is better)
Translates to: SMTALHGWNPDD*SMPLAKGFLLS
Trigger: GCTGAGGAGAAAGCCTTTGGCTAGTGGCATTGACCAGTCATCTGGATTCCAACCATGTAATGCAGTCATGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR CCA 72 bp GTTGTGATACTGAATACCACGTCATTGGGGCCATCATaGAGCTTCAGTTTTGCTATCTGGTCCGAGGAGAGT +
Preference number: 3 (lower is better)
Translates to: VVILNTTSLGPS*SFSFAIWSEES
Trigger: ACTCTCCTCGGACCAGATAGCAAAACTGAAGCTCCATGATGGCCCCAATGACGTGGTATTCAGTATCACAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR TCA 72 bp CCCTTCTACACTTCTGAGAAGCCACTGCCTTCTTTGTaGTTCAAACCAAGGTCTCACCATCACTCCAGACAT +
Preference number: 3 (lower is better)
Translates to: PFYTSEKPLPSL*FKPRSHHHSRH
Trigger: ATGTCTGGAGTGATGGTGAGACCTTGGTTTGAATCACAAAGAAGGCAGTGGCTTCTCAGAAGTGTAGAAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR TCA 72 bp CTGGGAACAGGGTCTGCATCTAATAACGATGAAATCTaGGGTGCTTCAAGAGGTGATTCGGGAAGCTCAGTA +
Preference number: 3 (lower is better)
Translates to: LGTGSASNNDEI*GASRGDSGSSV
Trigger: TACTGAGCTTCCCGAATCACCTCTTGAAGCACCTCAGATTTCATCGTTATTAGATGCAGACCCTGTTCCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR TCA 72 bp CTATGCAGATGGGTTAGACTACAGGAACTGCAGTACTaGTCATATGGTTACACATGCATGCTCCAGGTCCAC +
Preference number: 3 (lower is better)
Translates to: LCRWVRLQELQY*SYGYTCMLQVH
Trigger: GTGGACCTGGAGCATGCATGTGTAACCATATGATCAGTACTGCAGTTCCTGTAGTCTAACCCATCTGCATAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR GCA 72 bp GTTACATTCATTATCCTAAATACCCACTCATCAATGTaGAGGGACGAGTGTCGCGCTAACAGACACGTGGAC +
Preference number: 3 (lower is better)
Translates to: VTFIILNTHSSM*RDECRANRHVD
Trigger: GTCCACGTGTCTGTTAGCGCGACACTCGTCCCTGCACATTGATGAGTGGGTATTTAGGATAATGAATGTAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR GCA 72 bp CCAACTGACTATGCAGATGGGTTAGACTACAGGAACTaGAGTACTGATCATATGGTTACACATGCATGCTCC +
Preference number: 3 (lower is better)
Translates to: PTDYADGLDYRN*STDHMVTHACS
Trigger: GGAGCATGCATGTGTAACCATATGATCAGTACTGCAGTTCCTGTAGTCTAACCCATCTGCATAGTCAGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR CAA 90 bp TTACACAGGGCTCTAGGTTTGGGTTTCACTATGGTACAGGTAGTATCTTCAACATCATACCGTTCTCTTTaGGTGACCTTGGTGGACTCT +
Preference number: 3 (lower is better)
Translates to: LHRALGLGFTMVQVVSSTSYRSL*VTLVDS
Trigger: AGAGTCCACCAAGGTCACCAAAAGAGAACGGTATGA...TGTTGAAGATACTACCTGTACCATAGTGAAACCCAAACCTAGAGCCCTGTGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR-3UTR CAA 90 bp ACATTTCTTTTTCCAACTGACTATGCAGATGGGTTAGACTACAGGAACTGCAGTCATCTGCTCCAACATTaGACAAGAGCACTTAACGAG +
Preference number: 3 (lower is better)
Translates to: TFLFPTDYADGLDYRNCSHLLQH*TRALNE
Trigger: CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATG...ACTGCAGTTCCTGTAGTCTAACCCATCTGCATAGTCAGTTGGAAAAAGAAATGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR TCA 72 bp TCTACGTTACTACAACAGCACATTTCTTTTTCCAACTaGCTATGCAGATGGGTTAGACTACAGGAACTGCAG +
Preference number: 3 (lower is better)
Translates to: STLLQQHISFSN*LCRWVRLQELQ
Trigger: CTGCAGTTCCTGTAGTCTAACCCATCTGCATAGTCAGTTGGAAAAAGAAATGTGCTGTTGTAGTAACGTAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR-3UTR CAA 90 bp ACATTTCTTTTTCCAACTGACTATGCAGATGGGTTAGACTACAGGAACTGCAGTCTGACCAGTGGAGATTaGAACTCTTTACTTTTGTGT +
Preference number: 3 (lower is better)
Translates to: TFLFPTDYADGLDYRNCSLTSGD*NSLLLC
Trigger: ACACAAAAGTAAAGAGTTCAAATCTCCACTGGTCAG...ACTGCAGTTCCTGTAGTCTAACCCATCTGCATAGTCAGTTGGAAAAAGAAATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR CCA 72 bp GAAGGTCTAAGAGAAAACATAGGATTTTCTGTACCGTaGCTATTCTACCAAGCTCAGGTTAAGTGCACAATT +
Preference number: 3 (lower is better)
Translates to: EGLRENIGFSVP*LFYQAQVKCTI
Trigger: AATTGTGCACTTAACCTGAGCTTGGTAGAATAGCCACGGTACAGAAAATCCTATGTTTTCTCTTAGACCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp CACTTAACGAGGCCAGTGTCTGAGGCCGCCAGGGAGGTGCGGGGGTACCCCACATCAGACTCAGGCCACTaGCTGGAACCTGGATCCGTG +
Preference number: 4 (lower is better)
Translates to: HLTRPVSEAAREVRGYPTSDSGH*LEPGSV
Trigger: CACGGATCCAGGTTCCAGGCAGTGGCCTGAGTCTGA...TGTGGGGTACCCCCGCACCTCCCTGGCGGCCTCAGACACTGGCCTCGTTAAGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CACTTAACGAGGCCAGTGTCTGAGGCCGCCAGGGAGGTGCGGGGGTACCCCACACATTCTCTGCAGGTCTaGCACTGGTTGGCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: HLTRPVSEAAREVRGYPTHSLQV*HWLAPQ
Trigger: CTGAGGAGCCAACCAGTGCCAGACCTGCAGAGAATG...TGTGGGGTACCCCCGCACCTCCCTGGCGGCCTCAGACACTGGCCTCGTTAAGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GGCTTTGAAGGGCACCTCAGAAGGCTGGACCCGCCCCACAGGCTGCAGGGAACACACCGACAGGTGCCCTaGTACTGGGTTGTGATACTG +
Preference number: 4 (lower is better)
Translates to: GFEGHLRRLDPPHRLQGTHRQVP*YWVVIL
Trigger: CAGTATCACAACCCAGTATCAGGGCACCTGTCGGTG...TGTTCCCTGCAGCCTGTGGGGCGGGTCCAGCCTTCTGAGGTGCCCTTCAAAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp ATGGCTTTGAAGGGCACCTCAGAAGGCTGGACCCGCCCCACAGGCTGCAGGGAATCAGACTCAGGCCACTaGCTGGAACCTGGATCCGTG +
Preference number: 4 (lower is better)
Translates to: MALKGTSEGWTRPTGCRESDSGH*LEPGSV
Trigger: CACGGATCCAGGTTCCAGGCAGTGGCCTGAGTCTGA...TTCCCTGCAGCCTGTGGGGCGGGTCCAGCCTTCTGAGGTGCCCTTCAAAGCCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp CACTTAACGAGGCCAGTGTCTGAGGCCGCCAGGGAGGTGCGGGGGTACCCCACAAGGCAGAGAACAAGCTaGTGGGAGACAGCATCAGAG +
Preference number: 4 (lower is better)
Translates to: HLTRPVSEAAREVRGYPTRQRTS*WETASE
Trigger: CTCTGATGCTGTCTCCCAGCAGCTTGTTCTCTGCCT...TGTGGGGTACCCCCGCACCTCCCTGGCGGCCTCAGACACTGGCCTCGTTAAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CACTTAACGAGGCCAGTGTCTGAGGCCGCCAGGGAGGTGCGGGGGTACCCCACACATAGAAGGGCTGCCTaGACGGGGCAAACAAGTTCT +
Preference number: 4 (lower is better)
Translates to: HLTRPVSEAAREVRGYPTHRRAA*TGQTSS
Trigger: AGAACTTGTTTGCCCCGTCCAGGCAGCCCTTCTATG...TGTGGGGTACCCCCGCACCTCCCTGGCGGCCTCAGACACTGGCCTCGTTAAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GGAGGGTGTGCACGCAGAGCTGGCAGCACTAACTGGACCTCTGGAGAAAGCCCTAGAGTTCCTTCACAGTaGCGAGCACCTGCCCAGCCA +
Preference number: 4 (lower is better)
Translates to: GGCARRAGSTNWTSGESPRVPSQ*RAPAQP
Trigger: TGGCTGGGCAGGTGCTCGTCACTGTGAAGGAACTCT...AGGGCTTTCTCCAGAGGTCCAGTTAGTGCTGCCAGCTCTGCGTGCACACCCTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GTGGACTCTGGGAACCCGCCCCACGTCCACTCCATGTGCGGCTCAGATCTGAGGCCCAGAATGGAAGAGTaGAGGCTCCTTGTAGTCCTC +
Preference number: 4 (lower is better)
Translates to: VDSGNPPHVHSMCGSDLRPRMEE*RLLVVL
Trigger: GAGGACTACAAGGAGCCTTCACTCTTCCATTCTGGG...CCTCAGATCTGAGCCGCACATGGAGTGGACGTGGGGCGGGTTCCCAGAGTCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR GCA 90 bp GGAGGGTGTGCACGCAGAGCTGGCAGCACTAACTGGACCTCTGGAGAAAGCCCTTCCCAGGAGGGGCCTTaGCATGGTAAACACTTGCAG +
Preference number: 4 (lower is better)
Translates to: GGCARRAGSTNWTSGESPSQEGP*HGKHLQ
Trigger: CTGCAAGTGTTTACCATGGCAAGGCCCCTCCTGGGA...AGGGCTTTCTCCAGAGGTCCAGTTAGTGCTGCCAGCTCTGCGTGCACACCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000126681.8
CDS-3UTR GCA 90 bp TGGGTTCTGAGGGAGCCTCTGCTGATGGGCTGGGAACAGGGTCTGCATCTAATAACAGTGACGAGCACCTaGCCAGCCAGCTGGCCCACA +
Preference number: 4 (lower is better)
Translates to: WVLREPLLMGWEQGLHLITVTST*PASWPT
Trigger: TGTGGGCCAGCTGGCTGGGCAGGTGCTCGTCACTGT...TATTAGATGCAGACCCTGTTCCCAGCCCATCAGCAGAGGCTCCCTCAGAACCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR GCA 90 bp ATGGCTTTGAAGGGCACCTCAGAAGGCTGGACCCGCCCCACAGGCTGCAGGGAATGCAACAGGGGAAGCTaGCTGCTCCTCCTTCCTATT +
Preference number: 4 (lower is better)
Translates to: MALKGTSEGWTRPTGCRECNRGS*LLLLPI
Trigger: AATAGGAAGGAGGAGCAGGCAGCTTCCCCTGTTGCA...TTCCCTGCAGCCTGTGGGGCGGGTCCAGCCTTCTGAGGTGCCCTTCAAAGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CACTTAACGAGGCCAGTGTCTGAGGCCGCCAGGGAGGTGCGGGGGTACCCCACAAGAACTGGTCTTCAGTaGGAATTGGTGAGGTGGCAA +
Preference number: 4 (lower is better)
Translates to: HLTRPVSEAAREVRGYPTRTGLQ*ELVRWQ
Trigger: TTGCCACCTCACCAATTCCCACTGAAGACCAGTTCT...TGTGGGGTACCCCCGCACCTCCCTGGCGGCCTCAGACACTGGCCTCGTTAAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AGGAAGCTGAAAGAAGGTGGCAGTGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGCCTCTGCTGATGGGCTaGGAACAGGGTCTGCATCTA +
Preference number: 4 (lower is better)
Translates to: RKLKEGGSASFGSPSLFWPLLMG*EQGLHL
Trigger: TAGATGCAGACCCTGTTCCCAGCCCATCAGCAGAGG...CCAGAACAGGGACGGGGACCCGAAGCTGGCACTGCCACCTTCTTTCAGCTTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CACTTAACGAGGCCAGTGTCTGAGGCCGCCAGGGAGGTGCGGGGGTACCCCACATTCAGTTTTGCTATCTaGTCCGAGGAGAGTCGGAGA +
Preference number: 4 (lower is better)
Translates to: HLTRPVSEAAREVRGYPTFSFAI*SEESRR
Trigger: TCTCCGACTCTCCTCGGACCAGATAGCAAAACTGAA...TGTGGGGTACCCCCGCACCTCCCTGGCGGCCTCAGACACTGGCCTCGTTAAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CTGCAGGGAACAGAGGCTCCTGCTGCTCAGCTCGGGTCCTGGTCCACTCTACATAGTTCCACAGGTAGATaGTCCCTGCACACCGACAGG +
Preference number: 4 (lower is better)
Translates to: LQGTEAPAAQLGSWSTLHSSTGR*SLHTDR
Trigger: CCTGTCGGTGTGCAGGGACCATCTACCTGTGGAACT...ATGTAGAGTGGACCAGGACCCGAGCTGAGCAGCAGGAGCCTCTGTTCCCTGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AGGAAGCTGAAAGAAGGTGGCAGTGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGGTCCAGGTCAGGGATTaGGTCTCGCCAGTAGCAGAA +
Preference number: 4 (lower is better)
Translates to: RKLKEGGSASFGSPSLFWVQVRD*VSPVAE
Trigger: TTCTGCTACTGGCGAGACCCAATCCCTGACCTGGAC...CCAGAACAGGGACGGGGACCCGAAGCTGGCACTGCCACCTTCTTTCAGCTTCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CTGCAGGGAACAGAGGCTCCTGCTGCTCAGCTCGGGTCCTGGTCCACTCTACATGTCCAGGTCAGGGATTaGGTCTCGCCAGTAGCAGAA +
Preference number: 4 (lower is better)
Translates to: LQGTEAPAAQLGSWSTLHVQVRD*VSPVAE
Trigger: TTCTGCTACTGGCGAGACCCAATCCCTGACCTGGAC...ATGTAGAGTGGACCAGGACCCGAGCTGAGCAGCAGGAGCCTCTGTTCCCTGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp AGGAGCCTCTCTCTCCCAGGCCTCCATGACTGCATTACATGGTTGGAATCCAGAACAGTGACGAGCACCTaGCCAGCCAGCTGGCCCACA +
Preference number: 4 (lower is better)
Translates to: RSLSLPGLHDCITWLESRTVTST*PASWPT
Trigger: TGTGGGCCAGCTGGCTGGGCAGGTGCTCGTCACTGT...TCTGGATTCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGAGAGAGGCTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp CTGCAGGGAACAGAGGCTCCTGCTGCTCAGCTCGGGTCCTGGTCCACTCTACATAGGCAGAGAACAAGCTaGTGGGAGACAGCATCAGAG +
Preference number: 4 (lower is better)
Translates to: LQGTEAPAAQLGSWSTLHRQRTS*WETASE
Trigger: CTCTGATGCTGTCTCCCAGCAGCTTGTTCTCTGCCT...ATGTAGAGTGGACCAGGACCCGAGCTGAGCAGCAGGAGCCTCTGTTCCCTGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CGAACTCAGATGGATTTCTTAGTAACTGCCCACACCCAGCTGGGCAAGGCTCTGGACCTTGGTGGACTCTaGGAACCCGCCCCACGTCCA +
Preference number: 4 (lower is better)
Translates to: RTQMDFLVTAHTQLGKALDLGGL*EPAPRP
Trigger: TGGACGTGGGGCGGGTTCCCAGAGTCCACCAAGGTC...CAGAGCCTTGCCCAGCTGGGTGTGGGCAGTTACTAAGAAATCCATCTGAGTTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp TGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGAAAGCAGGTTCCTGACTGTCAGCACTCCCCACAGACTGTaGGGACTGAGAACCAGAGAA +
Preference number: 4 (lower is better)
Translates to: CQLRVPVPVLESRFLTVSTPHRL*GLRTRE
Trigger: TTCTCTGGTTCTCAGTCCCCACAGTCTGTGGGGAGT...GCTGACAGTCAGGAACCTGCTTTCCAGAACAGGGACGGGGACCCGAAGCTGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp AGGAAGCTGAAAGAAGGTGGCAGTGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGATCACCTACATCTTCTaGAACAGGGGAAGCTGCCTG +
Preference number: 4 (lower is better)
Translates to: RKLKEGGSASFGSPSLFWITYIF*NRGSCL
Trigger: CAGGCAGCTTCCCCTGTTGCAGAAGATGTAGGTGAT...CCAGAACAGGGACGGGGACCCGAAGCTGGCACTGCCACCTTCTTTCAGCTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GAAAGCAGGTTCCTGACTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGGCCAGTGCTCAGAGTCACTCTTaGGGCACACAGCCTGAGGGT +
Preference number: 4 (lower is better)
Translates to: ESRFLTVSSWVFLCKRASAQSHS*GTQPEG
Trigger: ACCCTCAGGCTGTGTGCCCCAAGAGTGACTCTGAGC...ACTGGCCCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GAGTGTCGCGCTAACAGACACGTGGACAGAAAGACCAGCCATCACTCTGCACAGACTCAGGCCACTGCCTaGAACCTGGATCCGTGTCAC +
Preference number: 4 (lower is better)
Translates to: ECRANRHVDRKTSHHSAQTQATA*NLDPCH
Trigger: GTGACACGGATCCAGGTTCCAGGCAGTGGCCTGAGT...CTGTGCAGAGTGATGGCTGGTCTTTCTGTCCACGTGTCTGTTAGCGCGACACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CTGCAGGGAACAGAGGCTCCTGCTGCTCAGCTCGGGTCCTGGTCCACTCTACATTTGGCTCCTCAGCATTaGAAGGCAGGTCATTTGCTG +
Preference number: 4 (lower is better)
Translates to: LQGTEAPAAQLGSWSTLHLAPQH*KAGHLL
Trigger: CAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAA...ATGTAGAGTGGACCAGGACCCGAGCTGAGCAGCAGGAGCCTCTGTTCCCTGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
3UTR CAA 72 bp TGTCGCCTGAACCGTTTCTTCTCTCAGATGATGGCTTaGAAGGGCACCTCAGAAGGCTGGACCCGCCCCACA +
Preference number: 4 (lower is better)
Translates to: CRLNRFFSQMMA*KGTSEGWTRPT
Trigger: TGTGGGGCGGGTCCAGCCTTCTGAGGTGCCCTTCAAAGCCATCATCTGAGAGAAGAAACGGTTCAGGCGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp CTGCAGGGAACAGAGGCTCCTGCTGCTCAGCTCGGGTCCTGGTCCACTCTACATGAAACGTCTGAACTCTaGGCTGGCCTTTCATTTCCA +
Preference number: 4 (lower is better)
Translates to: LQGTEAPAAQLGSWSTLHETSEL*AGLSFP
Trigger: TGGAAATGAAAGGCCAGCTCAGAGTTCAGACGTTTC...ATGTAGAGTGGACCAGGACCCGAGCTGAGCAGCAGGAGCCTCTGTTCCCTGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GTTCTGGAAAGCAGGTTCCTGACTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGTGTGCGGCTCAGATCTaGGGAGGCTCTCAGATGGCT +
Preference number: 4 (lower is better)
Translates to: VLESRFLTVSSWVFLCKRCAAQI*GGSQMA
Trigger: AGCCATCTGAGAGCCTCCTCAGATCTGAGCCGCACA...CCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTCCAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp CTTAAGTCAGGTGACAGTGTCAGAGAACAGGACTCCCAGGACCCCAGGCAACTGTCTCTCCATTCTCACTaGGGCCTCCACAGAGGGAGA +
Preference number: 4 (lower is better)
Translates to: LKSGDSVREQDSQDPRQLSLHSH*GLHRGR
Trigger: TCTCCCTCTGTGGAGGCCTCAGTGAGAATGGAGAGA...CAGTTGCCTGGGGTCCTGGGAGTCCTGTTCTCTGACACTGTCACCTGACTTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp AGGAGCCTCTCTCTCCCAGGCCTCCATGACTGCATTACATGGTTGGAATCCAGACACGTCCACTCCATGTaGGGCTCAGATCTGAGGAGG +
Preference number: 4 (lower is better)
Translates to: RSLSLPGLHDCITWLESRHVHSM*GSDLRR
Trigger: CCTCCTCAGATCTGAGCCGCACATGGAGTGGACGTG...TCTGGATTCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGAGAGAGGCTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp TGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGAAAGCAGGTTCCTGACTGTCAGCGGAAAGGCAGAATTCTaGTCCTTACTGAGAAGTGGG +
Preference number: 4 (lower is better)
Translates to: CQLRVPVPVLESRFLTVSGKAEF*SLLRSG
Trigger: CCCACTTCTCAGTAAGGAGCAGAATTCTGCCTTTCC...GCTGACAGTCAGGAACCTGCTTTCCAGAACAGGGACGGGGACCCGAAGCTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GAGTGTCGCGCTAACAGACACGTGGACAGAAAGACCAGCCATCACTCTGCACAGGAGGAGGCTCTCAGATaGCTTCACCTCCAGCTCAGA +
Preference number: 4 (lower is better)
Translates to: ECRANRHVDRKTSHHSAQEEALR*LHLQLR
Trigger: TCTGAGCTGGAGGTGAAGCCATCTGAGAGCCTCCTC...CTGTGCAGAGTGATGGCTGGTCTTTCTGTCCACGTGTCTGTTAGCGCGACACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp ATGGCTTTGAAGGGCACCTCAGAAGGCTGGACCCGCCCCACAGGCTGCAGGGAATCCCTCCTTGGTCTCTaGCAACTGTTTGATCATACT +
Preference number: 4 (lower is better)
Translates to: MALKGTSEGWTRPTGCRESLLGL*QLFDHT
Trigger: AGTATGATCAAACAGTTGCCAGAGACCAAGGAGGGA...TTCCCTGCAGCCTGTGGGGCGGGTCCAGCCTTCTGAGGTGCCCTTCAAAGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CTGCAGGGAACAGAGGCTCCTGCTGCTCAGCTCGGGTCCTGGTCCACTCTACATTTCAGTTTTGCTATCTaGTCCGAGGAGAGTCGGAGA +
Preference number: 4 (lower is better)
Translates to: LQGTEAPAAQLGSWSTLHFSFAI*SEESRR
Trigger: TCTCCGACTCTCCTCGGACCAGATAGCAAAACTGAA...ATGTAGAGTGGACCAGGACCCGAGCTGAGCAGCAGGAGCCTCTGTTCCCTGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GGAGGGTGTGCACGCAGAGCTGGCAGCACTAACTGGACCTCTGGAGAAAGCCCTCTCCTTACTGAGAAGTaGGAACACGTGTTCCACAAG +
Preference number: 4 (lower is better)
Translates to: GGCARRAGSTNWTSGESPLLTEK*EHVFHK
Trigger: CTTGTGGAACACGTGTTCCCACTTCTCAGTAAGGAG...AGGGCTTTCTCCAGAGGTCCAGTTAGTGCTGCCAGCTCTGCGTGCACACCCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp AGGAAGCTGAAAGAAGGTGGCAGTGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGAGTGAAAACTGCCTCTaGTTCCAAGGTGTGAGAAAC +
Preference number: 4 (lower is better)
Translates to: RKLKEGGSASFGSPSLFWSENCL*FQGVRN
Trigger: GTTTCTCACACCTTGGAATCAGAGGCAGTTTTCACT...CCAGAACAGGGACGGGGACCCGAAGCTGGCACTGCCACCTTCTTTCAGCTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp CGAACTCAGATGGATTTCTTAGTAACTGCCCACACCCAGCTGGGCAAGGCTCTGAGCCTAGCTATGCCCTaGTGCGTCCAGTCTTTACCC +
Preference number: 4 (lower is better)
Translates to: RTQMDFLVTAHTQLGKALSLAMP*CVQSLP
Trigger: GGGTAAAGACTGGACGCATCAGGGCATAGCTAGGCT...CAGAGCCTTGCCCAGCTGGGTGTGGGCAGTTACTAAGAAATCCATCTGAGTTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GAAAGCAGGTTCCTGACTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGGCCAGTAGTAGCAGAAGGAGCTaGACTCTGGGCATGGAAAGG +
Preference number: 4 (lower is better)
Translates to: ESRFLTVSSWVFLCKRASSSRRS*TLGMER
Trigger: CCTTTCCATGCCCAGAGTTCAGCTCCTTCTGCTACT...ACTGGCCCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp ATAGTCATACCGTTCTCTTTTGGTGACCTTGGTGGACTCTGGGAACCCGCCCCATCCCAGGAGGGGCCTTaGCATGGTAAACACTTGCAG +
Preference number: 4 (lower is better)
Translates to: IVIPFSFGDLGGLWEPAPSQEGP*HGKHLQ
Trigger: CTGCAAGTGTTTACCATGGCAAGGCCCCTCCTGGGA...TGGGGCGGGTTCCCAGAGTCCACCAAGGTCACCAAAAGAGAACGGTATGACTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR GCA 90 bp ACTACGTGCCTCCAGGGCTTGCCACGGACAACTATGTTTCAAATGGTCTTTTTCACAGTGACGAGCACCTaGCCAGCCAGCTGGCCCACA +
Preference number: 4 (lower is better)
Translates to: TTCLQGLPRTTMFQMVFFTVTST*PASWPT
Trigger: TGTGGGCCAGCTGGCTGGGCAGGTGCTCGTCACTGT...GAAAAAGACCATTTGAAACATAGTTGTCCGTGGCAAGCCCTGGAGGCACGTAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp CGAACTCAGATGGATTTCTTAGTAACTGCCCACACCCAGCTGGGCAAGGCTCTGACAGGGGAAGCTGCCTaGTCCTCCTTCCTATTGTCC +
Preference number: 4 (lower is better)
Translates to: RTQMDFLVTAHTQLGKALTGEAA*SSFLLS
Trigger: GGACAATAGGAAGGAGGAGCAGGCAGCTTCCCCTGT...CAGAGCCTTGCCCAGCTGGGTGTGGGCAGTTACTAAGAAATCCATCTGAGTTCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp CTTAAGTCAGGTGACAGTGTCAGAGAACAGGACTCCCAGGACCCCAGGCAACTGTGCAACAGGGGAAGCTaGCTGCTCCTCCTTCCTATT +
Preference number: 4 (lower is better)
Translates to: LKSGDSVREQDSQDPRQLCNRGS*LLLLPI
Trigger: AATAGGAAGGAGGAGCAGGCAGCTTCCCCTGTTGCA...CAGTTGCCTGGGGTCCTGGGAGTCCTGTTCTCTGACACTGTCACCTGACTTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp GGTTCTGAGGGAGCCTCTGCTGATGGGCTGGGAACAGGGTCTGCATCTAATAACTGCAACAGGGGAAGCTaGCTGCTCCTCCTTCCTATT +
Preference number: 4 (lower is better)
Translates to: GSEGASADGLGTGSASNNCNRGS*LLLLPI
Trigger: AATAGGAAGGAGGAGCAGGCAGCTTCCCCTGTTGCA...GTTATTAGATGCAGACCCTGTTCCCAGCCCATCAGCAGAGGCTCCCTCAGAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CCA 90 bp CGAACTCAGATGGATTTCTTAGTAACTGCCCACACCCAGCTGGGCAAGGCTCTGGAGGAGGCTCTCAGATaGCTTCACCTCCAGCTCAGA +
Preference number: 4 (lower is better)
Translates to: RTQMDFLVTAHTQLGKALEEALR*LHLQLR
Trigger: TCTGAGCTGGAGGTGAAGCCATCTGAGAGCCTCCTC...CAGAGCCTTGCCCAGCTGGGTGTGGGCAGTTACTAAGAAATCCATCTGAGTTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CAGTTTCTGGTTTCTTCCTTTTTAGATGTGCAGCTGCGTGGTGCCCAGTACACAGACCTTGGTGGACTCTaGGAACCCGCCCCACGTCCA +
Preference number: 4 (lower is better)
Translates to: QFLVSSFLDVQLRGAQYTDLGGL*EPAPRP
Trigger: TGGACGTGGGGCGGGTTCCCAGAGTCCACCAAGGTC...TGTGTACTGGGCACCACGCAGCTGCACATCTAAAAAGGAAGAAACCAGAAACTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GGAGGGTGTGCACGCAGAGCTGGCAGCACTAACTGGACCTCTGGAGAAAGCCCTCCACAGCACTGCCATTaGTTTCTATGTCAATCACTT +
Preference number: 4 (lower is better)
Translates to: GGCARRAGSTNWTSGESPPQHCH*FLCQSL
Trigger: AAGTGATTGACATAGAAATCAATGGCAGTGCTGTGG...AGGGCTTTCTCCAGAGGTCCAGTTAGTGCTGCCAGCTCTGCGTGCACACCCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GAAAGCAGGTTCCTGACTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGGCCAGTTTCAGTGGGAATTGGTaGGGTGGCAAGATAAGCAGG +
Preference number: 4 (lower is better)
Translates to: ESRFLTVSSWVFLCKRASFSGNW*GGKISR
Trigger: CCTGCTTATCTTGCCACCTCACCAATTCCCACTGAA...ACTGGCCCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp CTTAAGTCAGGTGACAGTGTCAGAGAACAGGACTCCCAGGACCCCAGGCAACTGTTCAGTGGGAATTGGTaGGGTGGCAAGATAAGCAGG +
Preference number: 4 (lower is better)
Translates to: LKSGDSVREQDSQDPRQLFSGNW*GGKISR
Trigger: CCTGCTTATCTTGCCACCTCACCAATTCCCACTGAA...CAGTTGCCTGGGGTCCTGGGAGTCCTGTTCTCTGACACTGTCACCTGACTTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp AGTCACTCTTGGGGCACACAGCCTGAGGGTAGGTGCTGCAATCCTAACGTCCTATTCAGTGGGAATTGGTaGGGTGGCAAGATAAGCAGG +
Preference number: 4 (lower is better)
Translates to: SHSWGTQPEGRCCNPNVLFSGNW*GGKISR
Trigger: CCTGCTTATCTTGCCACCTCACCAATTCCCACTGAA...TAGGACGTTAGGATTGCAGCACCTACCCTCAGGCTGTGTGCCCCAAGAGTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR TCA 90 bp TGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGAAAGCAGGTTCCTGACTGTCAGCGAAATGTGTGTTCTCTaGTGGTGTAATCGTAGCTGT +
Preference number: 4 (lower is better)
Translates to: CQLRVPVPVLESRFLTVSEMCVL*WCNRSC
Trigger: ACAGCTACGATTACACCATCAGAGAACACACATTTC...GCTGACAGTCAGGAACCTGCTTTCCAGAACAGGGACGGGGACCCGAAGCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp TGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGAAAGCAGGTTCCTGACTGTCAGCTTTCAACTTCTCTTATaGGGCTGTCTTCACTGGGAA +
Preference number: 4 (lower is better)
Translates to: CQLRVPVPVLESRFLTVSFQLLL*GCLHWE
Trigger: TTCCCAGTGAAGACAGCCTCATAAGAGAAGTTGAAA...GCTGACAGTCAGGAACCTGCTTTCCAGAACAGGGACGGGGACCCGAAGCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp AGGAAGCTGAAAGAAGGTGGCAGTGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGTTTCAACTTCTCTTATaGGGCTGTCTTCACTGGGAA +
Preference number: 4 (lower is better)
Translates to: RKLKEGGSASFGSPSLFWFQLLL*GCLHWE
Trigger: TTCCCAGTGAAGACAGCCTCATAAGAGAAGTTGAAA...CCAGAACAGGGACGGGGACCCGAAGCTGGCACTGCCACCTTCTTTCAGCTTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTGTCCATGGCAGAGTCTaGGAGGCATTCAGTGCCACT +
Preference number: 4 (lower is better)
Translates to: VHNSTEARESPQVKECRLVHGRV*EAFSAT
Trigger: AGTGGCACTGAATGCCTCTCAGACTCTGCCATGGAC...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp GCAACAAGCCATCCAGGGGTTTGTGTGCAAACACACTTAAGGGCATCTCTCTTTGGGTCATGTCGGCCATaGCGATGGCACGTGCAGAAC +
Preference number: 4 (lower is better)
Translates to: ATSHPGVCVQTHLRASLFGSCRP*RWHVQN
Trigger: GTTCTGCACGTGCCATCGGCATGGCCGACATGACCC...AAAGAGAGATGCCCTTAAGTGTGTTTGCACACAAACCCCTGGATGGCTTGTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp TCCCAGGACCCCAGGCAACTGCCCTTCTACACTTCTGAGAAGCCACTGCCTTCTGGAAAGGCAGAATTCTaGTCCTTACTGAGAAGTGGG +
Preference number: 4 (lower is better)
Translates to: SQDPRQLPFYTSEKPLPSGKAEF*SLLRSG
Trigger: CCCACTTCTCAGTAAGGAGCAGAATTCTGCCTTTCC...AGAAGGCAGTGGCTTCTCAGAAGTGTAGAAGGGCAGTTGCCTGGGGTCCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CTTAAGTCAGGTGACAGTGTCAGAGAACAGGACTCCCAGGACCCCAGGCAACTGCAATCACTTTCTCCTTaGACCTCAGGACACCCAGCT +
Preference number: 4 (lower is better)
Translates to: LKSGDSVREQDSQDPRQLQSLSP*TSGHPA
Trigger: AGCTGGGTGTCCTGAGGTCCAAGGAGAAAGTGATTG...CAGTTGCCTGGGGTCCTGGGAGTCCTGTTCTCTGACACTGTCACCTGACTTAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTCCTCTGCTGATGGGCTaGGAACAGGGTCTGCATCTA +
Preference number: 4 (lower is better)
Translates to: VHNSTEARESPQVKECRLPLLMG*EQGLHL
Trigger: TAGATGCAGACCCTGTTCCCAGCCCATCAGCAGAGG...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CGAACTCAGATGGATTTCTTAGTAACTGCCCACACCCAGCTGGGCAAGGCTCTGGTCTTTACCCAGCTGTaGGAGAATCTGCCCCAAAGC +
Preference number: 4 (lower is better)
Translates to: RTQMDFLVTAHTQLGKALVFTQL*ENLPQS
Trigger: GCTTTGGGGCAGATTCTCCCACAGCTGGGTAAAGAC...CAGAGCCTTGCCCAGCTGGGTGTGGGCAGTTACTAAGAAATCCATCTGAGTTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AGGAGCCTCTCTCTCCCAGGCCTCCATGACTGCATTACATGGTTGGAATCCAGACATAGAAGGGCTGCCTaGACGGGGCAAACAAGTTCT +
Preference number: 4 (lower is better)
Translates to: RSLSLPGLHDCITWLESRHRRAA*TGQTSS
Trigger: AGAACTTGTTTGCCCCGTCCAGGCAGCCCTTCTATG...TCTGGATTCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGAGAGAGGCTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp TCCCAGGACCCCAGGCAACTGCCCTTCTACACTTCTGAGAAGCCACTGCCTTCTTCACAGAACTCTGAGTaGAAACTGCCTCTGATTCCA +
Preference number: 4 (lower is better)
Translates to: SQDPRQLPFYTSEKPLPSSQNSE*KLPLIP
Trigger: TGGAATCAGAGGCAGTTTTCACTCAGAGTTCTGTGA...AGAAGGCAGTGGCTTCTCAGAAGTGTAGAAGGGCAGTTGCCTGGGGTCCTGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp AGGAAGCTGAAAGAAGGTGGCAGTGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGTTTTTCACAGAACTCTaGGTGAAAACTGCCTCTGAT +
Preference number: 4 (lower is better)
Translates to: RKLKEGGSASFGSPSLFWFFTEL*VKTASD
Trigger: ATCAGAGGCAGTTTTCACTCAGAGTTCTGTGAAAAA...CCAGAACAGGGACGGGGACCCGAAGCTGGCACTGCCACCTTCTTTCAGCTTCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp CGAACTCAGATGGATTTCTTAGTAACTGCCCACACCCAGCTGGGCAAGGCTCTGGGAAGGCAGGTCATTTaGTGGAGGGACCTCAGATTT +
Preference number: 4 (lower is better)
Translates to: RTQMDFLVTAHTQLGKALGRQVI*WRDLRF
Trigger: AAATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCC...CAGAGCCTTGCCCAGCTGGGTGTGGGCAGTTACTAAGAAATCCATCTGAGTTCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp AGGAGCCTCTCTCTCCCAGGCCTCCATGACTGCATTACATGGTTGGAATCCAGAAGCTGTGGGAGAATCTaGCCCAAAGCATCAGACTTG +
Preference number: 4 (lower is better)
Translates to: RSLSLPGLHDCITWLESRSCGRI*PKASDL
Trigger: CAAGTCTGATGCTTTGGGGCAGATTCTCCCACAGCT...TCTGGATTCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGAGAGAGGCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AGCCACTGCCTTCTTTGTGATTCAAACCAAGGTCTCACCATCACTCCAGACATGGCTCAGAGTCACTCTTaGGGCACACAGCCTGAGGGT +
Preference number: 4 (lower is better)
Translates to: SHCLLCDSNQGLTITPDMAQSHS*GTQPEG
Trigger: ACCCTCAGGCTGTGTGCCCCAAGAGTGACTCTGAGC...CATGTCTGGAGTGATGGTGAGACCTTGGTTTGAATCACAAAGAAGGCAGTGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AGCCACTGCCTTCTTTGTGATTCAAACCAAGGTCTCACCATCACTCCAGACATGACTCAGGCCACTGCCTaGAACCTGGATCCGTGTCAC +
Preference number: 4 (lower is better)
Translates to: SHCLLCDSNQGLTITPDMTQATA*NLDPCH
Trigger: GTGACACGGATCCAGGTTCCAGGCAGTGGCCTGAGT...CATGTCTGGAGTGATGGTGAGACCTTGGTTTGAATCACAAAGAAGGCAGTGGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AGGAAGCTGAAAGAAGGTGGCAGTGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGTCGACCAGATTTCTTTaGCATCTTGTCTTTAACCCA +
Preference number: 4 (lower is better)
Translates to: RKLKEGGSASFGSPSLFWSTRFL*HLVFNP
Trigger: TGGGTTAAAGACAAGATGCCAAAGAAATCTGGTCGA...CCAGAACAGGGACGGGGACCCGAAGCTGGCACTGCCACCTTCTTTCAGCTTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AGGAGCCTCTCTCTCCCAGGCCTCCATGACTGCATTACATGGTTGGAATCCAGATTGGCTCCTCAGCATTaGAAGGCAGGTCATTTGCTG +
Preference number: 4 (lower is better)
Translates to: RSLSLPGLHDCITWLESRLAPQH*KAGHLL
Trigger: CAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAA...TCTGGATTCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGAGAGAGGCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GGAGGGTGTGCACGCAGAGCTGGCAGCACTAACTGGACCTCTGGAGAAAGCCCTAAATATCCTACAGTCTaGAACTCCGACTTGTGTGTA +
Preference number: 4 (lower is better)
Translates to: GGCARRAGSTNWTSGESPKYPTV*NSDLCV
Trigger: TACACACAAGTCGGAGTTCCAGACTGTAGGATATTT...AGGGCTTTCTCCAGAGGTCCAGTTAGTGCTGCCAGCTCTGCGTGCACACCCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CTTAAGTCAGGTGACAGTGTCAGAGAACAGGACTCCCAGGACCCCAGGCAACTGCTCCTTACTGAGAAGTaGGAACACGTGTTCCACAAG +
Preference number: 4 (lower is better)
Translates to: LKSGDSVREQDSQDPRQLLLTEK*EHVFHK
Trigger: CTTGTGGAACACGTGTTCCCACTTCTCAGTAAGGAG...CAGTTGCCTGGGGTCCTGGGAGTCCTGTTCTCTGACACTGTCACCTGACTTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GAAAGCAGGTTCCTGACTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGGCCAGTGAAGGAGCTGAACTCTaGGCATGGAAAGGCAGAATT +
Preference number: 4 (lower is better)
Translates to: ESRFLTVSSWVFLCKRASEGAEL*AWKGRI
Trigger: AATTCTGCCTTTCCATGCCCAGAGTTCAGCTCCTTC...ACTGGCCCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp AGCTCGGGTCCTGGTCCACTCTACATTGTTTTAGCAGCTTTTGTTCTACGTTACAGAGTTCCTTCACAGTaGCGAGCACCTGCCCAGCCA +
Preference number: 4 (lower is better)
Translates to: SSGPGPLYIVLAAFVLRYRVPSQ*RAPAQP
Trigger: TGGCTGGGCAGGTGCTCGTCACTGTGAAGGAACTCT...GTAACGTAGAACAAAAGCTGCTAAAACAATGTAGAGTGGACCAGGACCCGAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp CAGTTTCTGGTTTCTTCCTTTTTAGATGTGCAGCTGCGTGGTGCCCAGTACACAGTCCATGGCAGAGTCTaGGAGGCATTCAGTGCCACT +
Preference number: 4 (lower is better)
Translates to: QFLVSSFLDVQLRGAQYTVHGRV*EAFSAT
Trigger: AGTGGCACTGAATGCCTCTCAGACTCTGCCATGGAC...TGTGTACTGGGCACCACGCAGCTGCACATCTAAAAAGGAAGAAACCAGAAACTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp CAGTTTCTGGTTTCTTCCTTTTTAGATGTGCAGCTGCGTGGTGCCCAGTACACACACCGACAGGTGCCCTaGTACTGGGTTGTGATACTG +
Preference number: 4 (lower is better)
Translates to: QFLVSSFLDVQLRGAQYTHRQVP*YWVVIL
Trigger: CAGTATCACAACCCAGTATCAGGGCACCTGTCGGTG...TGTGTACTGGGCACCACGCAGCTGCACATCTAAAAAGGAAGAAACCAGAAACTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp CATAACTCTCCCTGGTGCCATCTGCTCCAACATTTGACAAGAGCACTTAACGAGACAGGGGAAGCTGCCTaGTCCTCCTTCCTATTGTCC +
Preference number: 4 (lower is better)
Translates to: HNSPWCHLLQHLTRALNETGEAA*SSFLLS
Trigger: GGACAATAGGAAGGAGGAGCAGGCAGCTTCCCCTGT...CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp CTTCATCAGCTGAATGGAATCATTAGCAGGGAACTCTTTCCTCTGCCTTCAGGTCACGTCCACTCCATGTaGGGCTCAGATCTGAGGAGG +
Preference number: 4 (lower is better)
Translates to: LHQLNGIISRELFPLPSGHVHSM*GSDLRR
Trigger: CCTCCTCAGATCTGAGCCGCACATGGAGTGGACGTG...ACCTGAAGGCAGAGGAAAGAGTTCCCTGCTAATGATTCCATTCAGCTGATGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTCATCAGGCAAGTCCATaGCAGAGTCTGAGAGGCATT +
Preference number: 4 (lower is better)
Translates to: VHNSTEARESPQVKECRLHQASP*QSLRGI
Trigger: AATGCCTCTCAGACTCTGCCATGGACTTGCCTGATG...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp ACGTCATTGGGGCCATCATGGAGCTTCAGTTTTGCTATCTGGTCCGAGGAGAGTTTGGCTCCTCAGCATTaGAAGGCAGGTCATTTGCTG +
Preference number: 4 (lower is better)
Translates to: TSLGPSWSFSFAIWSEESLAPQH*KAGHLL
Trigger: CAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAA...ACTCTCCTCGGACCAGATAGCAAAACTGAAGCTCCATGATGGCCCCAATGACGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
CDS-3UTR CCA 90 bp CTCATCTGCACTATCAACTGCATGAGGGTGAGTCAGAGTGATGGGCTGCTGCTGAAGCATAGACATCGTTaGGACGGTTTCCAAAGGCAG +
Preference number: 4 (lower is better)
Translates to: LICTINCMRVSQSDGLLLKHRHR*DGFQRQ
Trigger: CTGCCTTTGGAAACCGTCCCAACGATGTCTATGCTT...CAGCAGCAGCCCATCACTCTGACTCACCCTCATGCAGTTGATAGTGCAGATGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AGGAGCCTCTCTCTCCCAGGCCTCCATGACTGCATTACATGGTTGGAATCCAGAGAAGGAGCTGAACTCTaGGCATGGAAAGGCAGAATT +
Preference number: 4 (lower is better)
Translates to: RSLSLPGLHDCITWLESREGAEL*AWKGRI
Trigger: AATTCTGCCTTTCCATGCCCAGAGTTCAGCTCCTTC...TCTGGATTCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGAGAGAGGCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
3UTR CAA 72 bp GTCCTAGGGAGGAGATCTGACGTCCTCTTCCGTGGCTaGTTTCTAATGGGGACCAATCTCCATCAGATAAGG +
Preference number: 4 (lower is better)
Translates to: VLGRRSDVLFRG*FLMGTNLHQIR
Trigger: CCTTATCTGATGGAGATTGGTCCCCATTAGAAACAAGCCACGGAAGAGGACGTCAGATCTCCTCCCTAGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
3UTR CAA 72 bp CTGCGTTGCTTCTCTGGGACTACGTGCCTCCAGGGCTaGCCACGGACAACTATGTTTCAAATGGTCTTTTTC +
Preference number: 4 (lower is better)
Translates to: LRCFSGTTCLQG*PRTTMFQMVFF
Trigger: GAAAAAGACCATTTGAAACATAGTTGTCCGTGGCAAGCCCTGGAGGCACGTAGTCCCAGAGAAGCAACGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTGAAACGTCTGAACTCTaGGCTGGCCTTTCATTTCCA +
Preference number: 4 (lower is better)
Translates to: VHNSTEARESPQVKECRLETSEL*AGLSFP
Trigger: TGGAAATGAAAGGCCAGCTCAGAGTTCAGACGTTTC...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp AGGAGCCTCTCTCTCCCAGGCCTCCATGACTGCATTACATGGTTGGAATCCAGATCACAGAACTCTGAGTaGAAACTGCCTCTGATTCCA +
Preference number: 4 (lower is better)
Translates to: RSLSLPGLHDCITWLESRSQNSE*KLPLIP
Trigger: TGGAATCAGAGGCAGTTTTCACTCAGAGTTCTGTGA...TCTGGATTCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGAGAGAGGCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GCAACAAGCCATCCAGGGGTTTGTGTGCAAACACACTTAAGGGCATCTCTCTTTCCCAGAATGGAAGAGTaGAGGCTCCTTGTAGTCCTC +
Preference number: 4 (lower is better)
Translates to: ATSHPGVCVQTHLRASLFPRMEE*RLLVVL
Trigger: GAGGACTACAAGGAGCCTTCACTCTTCCATTCTGGG...AAAGAGAGATGCCCTTAAGTGTGTTTGCACACAAACCCCTGGATGGCTTGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp CTTAAGTCAGGTGACAGTGTCAGAGAACAGGACTCCCAGGACCCCAGGCAACTGGAAATGTGTGTTCTCTaGTGGTGTAATCGTAGCTGT +
Preference number: 4 (lower is better)
Translates to: LKSGDSVREQDSQDPRQLEMCVL*WCNRSC
Trigger: ACAGCTACGATTACACCATCAGAGAACACACATTTC...CAGTTGCCTGGGGTCCTGGGAGTCCTGTTCTCTGACACTGTCACCTGACTTAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp AGCTCGGGTCCTGGTCCACTCTACATTGTTTTAGCAGCTTTTGTTCTACGTTACTCTCTCCATTCTCACTaGGGCCTCCACAGAGGGAGA +
Preference number: 4 (lower is better)
Translates to: SSGPGPLYIVLAAFVLRYSLHSH*GLHRGR
Trigger: TCTCCCTCTGTGGAGGCCTCAGTGAGAATGGAGAGA...GTAACGTAGAACAAAAGCTGCTAAAACAATGTAGAGTGGACCAGGACCCGAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp GACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTAAGTCAGGGGTCATGTCGGCCATaGCGATGGCACGTGCAGAAC +
Preference number: 4 (lower is better)
Translates to: DFQKSCSEIICPKGHLSQGSCRP*RWHVQN
Trigger: GTTCTGCACGTGCCATCGGCATGGCCGACATGACCC...CTGACTTAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CGAACTCAGATGGATTTCTTAGTAACTGCCCACACCCAGCTGGGCAAGGCTCTGGGCCCACATAATTCATaGTTTGAGACAGAATCCCAG +
Preference number: 4 (lower is better)
Translates to: RTQMDFLVTAHTQLGKALGPHNS*FETESQ
Trigger: CTGGGATTCTGTCTCAAACCATGAATTATGTGGGCC...CAGAGCCTTGCCCAGCTGGGTGTGGGCAGTTACTAAGAAATCCATCTGAGTTCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126681.8
CDS-3UTR CCA 90 bp CAGTTTCTGGTTTCTTCCTTTTTAGATGTGCAGCTGCGTGGTGCCCAGTACACAACTCCCCACAGACTGTaGGGACTGAGAACCAGAGAA +
Preference number: 4 (lower is better)
Translates to: QFLVSSFLDVQLRGAQYTTPHRL*GLRTRE
Trigger: TTCTCTGGTTCTCAGTCCCCACAGTCTGTGGGGAGT...TGTGTACTGGGCACCACGCAGCTGCACATCTAAAAAGGAAGAAACCAGAAACTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTAGTGAAAACTGCCTCTaGTTCCAAGGTGTGAGAAAC +
Preference number: 4 (lower is better)
Translates to: VHNSTEARESPQVKECRLSENCL*FQGVRN
Trigger: GTTTCTCACACCTTGGAATCAGAGGCAGTTTTCACT...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp CTGAGGGAGCCTCTGCTGATGGGCTGGGAACAGGGTCTGCATCTAATAACGATGTTTTTCACAGAACTCTaGGTGAAAACTGCCTCTGAT +
Preference number: 4 (lower is better)
Translates to: LREPLLMGWEQGLHLITMFFTEL*VKTASD
Trigger: ATCAGAGGCAGTTTTCACTCAGAGTTCTGTGAAAAA...CATCGTTATTAGATGCAGACCCTGTTCCCAGCCCATCAGCAGAGGCTCCCTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR TCA 90 bp GACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTAAGTCAGTGTGCGGCTCAGATCTaGGGAGGCTCTCAGATGGCT +
Preference number: 4 (lower is better)
Translates to: DFQKSCSEIICPKGHLSQCAAQI*GGSQMA
Trigger: AGCCATCTGAGAGCCTCCTCAGATCTGAGCCGCACA...CTGACTTAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp CATAACTCTCCCTGGTGCCATCTGCTCCAACATTTGACAAGAGCACTTAACGAGACAGACTGTGGGGACTaGGAACCAGAGAATGTGTCA +
Preference number: 4 (lower is better)
Translates to: HNSPWCHLLQHLTRALNETDCGD*EPENVS
Trigger: TGACACATTCTCTGGTTCTCAGTCCCCACAGTCTGT...CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTAATTCTGCTCCTTACTaGGAAGTGGGAACACGTGTT +
Preference number: 4 (lower is better)
Translates to: VHNSTEARESPQVKECRLNSAPY*EVGTRV
Trigger: AACACGTGTTCCCACTTCTCAGTAAGGAGCAGAATT...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp TTGCTTACACAGGGCTCTAGGTTTGGGTTTCACTATGGTACAGGTAGTATCTTCACAGGGGAAGCTGCCTaGTCCTCCTTCCTATTGTCC +
Preference number: 4 (lower is better)
Translates to: LLTQGSRFGFHYGTGSIFTGEAA*SSFLLS
Trigger: GGACAATAGGAAGGAGGAGCAGGCAGCTTCCCCTGT...GAAGATACTACCTGTACCATAGTGAAACCCAAACCTAGAGCCCTGTGTAAGCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR GCA 90 bp GTCTGGAACTCCGACTTGTGTGTAAGCATAGACATCGTTGGGACGGTTTCCAAAGGAAGGCAGGTCATTTaGTGGAGGGACCTCAGATTT +
Preference number: 4 (lower is better)
Translates to: VWNSDLCVSIDIVGTVSKGRQVI*WRDLRF
Trigger: AAATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCC...TTTGGAAACCGTCCCAACGATGTCTATGCTTACACACAAGTCGGAGTTCCAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
CDS-3UTR GCA 90 bp ACTACGTGCCTCCAGGGCTTGCCACGGACAACTATGTTTCAAATGGTCTTTTTCAGCTGTGGGAGAATCTaGCCCAAAGCATCAGACTTG +
Preference number: 4 (lower is better)
Translates to: TTCLQGLPRTTMFQMVFFSCGRI*PKASDL
Trigger: CAAGTCTGATGCTTTGGGGCAGATTCTCCCACAGCT...GAAAAAGACCATTTGAAACATAGTTGTCCGTGGCAAGCCCTGGAGGCACGTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CGAACTCAGATGGATTTCTTAGTAACTGCCCACACCCAGCTGGGCAAGGCTCTGTGGGAATTGGTGAGGTaGCAAGATAAGCAGGTAATT +
Preference number: 4 (lower is better)
Translates to: RTQMDFLVTAHTQLGKALWELVR*QDKQVI
Trigger: AATTACCTGCTTATCTTGCCACCTCACCAATTCCCA...CAGAGCCTTGCCCAGCTGGGTGTGGGCAGTTACTAAGAAATCCATCTGAGTTCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AGGAGCCTCTCTCTCCCAGGCCTCCATGACTGCATTACATGGTTGGAATCCAGAAATCGTAGCTGTCCTTaGATGATAGTCATACCGTTC +
Preference number: 4 (lower is better)
Translates to: RSLSLPGLHDCITWLESRNRSCP*MIVIPF
Trigger: GAACGGTATGACTATCATCCAAGGACAGCTACGATT...TCTGGATTCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGAGAGAGGCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CATAACTCTCCCTGGTGCCATCTGCTCCAACATTTGACAAGAGCACTTAACGAGGCTGAACTCTGGGCATaGAAAGGCAGAATTCTGCTC +
Preference number: 4 (lower is better)
Translates to: HNSPWCHLLQHLTRALNEAELWA*KGRILL
Trigger: GAGCAGAATTCTGCCTTTCCATGCCCAGAGTTCAGC...CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp TTTTCAACTTCTCTTATGAGGCTGTCTTCACTGGGAATTACCCTGAAATGTGTGAGAGTTCCTTCACAGTaGCGAGCACCTGCCCAGCCA +
Preference number: 4 (lower is better)
Translates to: FSTSLMRLSSLGITLKCVRVPSQ*RAPAQP
Trigger: TGGCTGGGCAGGTGCTCGTCACTGTGAAGGAACTCT...CACACATTTCAGGGTAATTCCCAGTGAAGACAGCCTCATAAGAGAAGTTGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR TCA 90 bp CATGAACATAGCCAAGTTTCCCTACTACCTAACACAAGTAACTCACGGAGCAGAAGTAGCAGAAGGAGCTaGACTCTGGGCATGGAAAGG +
Preference number: 4 (lower is better)
Translates to: HEHSQVSLLPNTSNSRSRSSRRS*TLGMER
Trigger: CCTTTCCATGCCCAGAGTTCAGCTCCTTCTGCTACT...TCTGCTCCGTGAGTTACTTGTGTTAGGTAGTAGGGAAACTTGGCTATGTTCATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp GCATTACATGGTTGGAATCCAGATGACTGGTCAATGCCACTAGCCAAAGGCTTTATCACCTACATCTTCTaGAACAGGGGAAGCTGCCTG +
Preference number: 4 (lower is better)
Translates to: ALHGWNPDDWSMPLAKGFITYIF*NRGSCL
Trigger: CAGGCAGCTTCCCCTGTTGCAGAAGATGTAGGTGAT...AAAGCCTTTGGCTAGTGGCATTGACCAGTCATCTGGATTCCAACCATGTAATGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CTTCATCAGCTGAATGGAATCATTAGCAGGGAACTCTTTCCTCTGCCTTCAGGTCATCAGGCAAGTCCATaGCAGAGTCTGAGAGGCATT +
Preference number: 4 (lower is better)
Translates to: LHQLNGIISRELFPLPSGHQASP*QSLRGI
Trigger: AATGCCTCTCAGACTCTGCCATGGACTTGCCTGATG...ACCTGAAGGCAGAGGAAAGAGTTCCCTGCTAATGATTCCATTCAGCTGATGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AATACCACGTCATTGGGGCCATCATGGAGCTTCAGTTTTGCTATCTGGTCCGAGTCCCTCCTTGGTCTCTaGCAACTGTTTGATCATACT +
Preference number: 4 (lower is better)
Translates to: NTTSLGPSWSFSFAIWSESLLGL*QLFDHT
Trigger: AGTATGATCAAACAGTTGCCAGAGACCAAGGAGGGA...CTCGGACCAGATAGCAAAACTGAAGCTCCATGATGGCCCCAATGACGTGGTATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
CDS-3UTR CCA 90 bp GACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTAAGTCAGCATTCTCTGCAGGTCTaGCACTGGTTGGCTCCTCAG +
Preference number: 4 (lower is better)
Translates to: DFQKSCSEIICPKGHLSQHSLQV*HWLAPQ
Trigger: CTGAGGAGCCAACCAGTGCCAGACCTGCAGAGAATG...CTGACTTAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CATAACTCTCCCTGGTGCCATCTGCTCCAACATTTGACAAGAGCACTTAACGAGAAGCATAGACATCGTTaGGACGGTTTCCAAAGGCAG +
Preference number: 4 (lower is better)
Translates to: HNSPWCHLLQHLTRALNEKHRHR*DGFQRQ
Trigger: CTGCCTTTGGAAACCGTCCCAACGATGTCTATGCTT...CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GTTCTGGAAAGCAGGTTCCTGACTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGAAATATCCTACAGTCTaGAACTCCGACTTGTGTGTA +
Preference number: 4 (lower is better)
Translates to: VLESRFLTVSSWVFLCKRKYPTV*NSDLCV
Trigger: TACACACAAGTCGGAGTTCCAGACTGTAGGATATTT...CCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTCCAGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTCCTTTGGTCCTCTCTTaGATTAATTCACCCTTTGGA +
Preference number: 4 (lower is better)
Translates to: VHNSTEARESPQVKECRLPLVLS*INSPFG
Trigger: TCCAAAGGGTGAATTAATCCAAGAGAGGACCAAAGG...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp TCCCAGGACCCCAGGCAACTGCCCTTCTACACTTCTGAGAAGCCACTGCCTTCTATGATTTGTTCCCTTTaGTCCTCTCTTGGATTAATT +
Preference number: 4 (lower is better)
Translates to: SQDPRQLPFYTSEKPLPSMICSL*SSLGLI
Trigger: AATTAATCCAAGAGAGGACCAAAGGGAACAAATCAT...AGAAGGCAGTGGCTTCTCAGAAGTGTAGAAGGGCAGTTGCCTGGGGTCCTGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTTTTTTCACAGAACTCTaGGTGAAAACTGCCTCTGAT +
Preference number: 4 (lower is better)
Translates to: VHNSTEARESPQVKECRLFFTEL*VKTASD
Trigger: ATCAGAGGCAGTTTTCACTCAGAGTTCTGTGAAAAA...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
47% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp GGAATTACCCTGAAATGTGTGTTCTCTGATGGTGTAATCGTAGCTGTCCTTGGAATCACCTACATCTTCTaGAACAGGGGAAGCTGCCTG +
Preference number: 4 (lower is better)
Translates to: GITLKCVFSDGVIVAVLGITYIF*NRGSCL
Trigger: CAGGCAGCTTCCCCTGTTGCAGAAGATGTAGGTGAT...TCCAAGGACAGCTACGATTACACCATCAGAGAACACACATTTCAGGGTAATTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CCA 90 bp AACTGGCGAGAACGTCACATGAACATAGCCAAGTTTCCCTACTACCTAACACAACAATCACTTTCTCCTTaGACCTCAGGACACCCAGCT +
Preference number: 4 (lower is better)
Translates to: NWRERHMNIAKFPYYLTQQSLSP*TSGHPA
Trigger: AGCTGGGTGTCCTGAGGTCCAAGGAGAAAGTGATTG...TTGTGTTAGGTAGTAGGGAAACTTGGCTATGTTCATGTGACGTTCTCGCCAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GCATTACATGGTTGGAATCCAGATGACTGGTCAATGCCACTAGCCAAAGGCTTTAGAACTGGTCTTCAGTaGGAATTGGTGAGGTGGCAA +
Preference number: 4 (lower is better)
Translates to: ALHGWNPDDWSMPLAKGFRTGLQ*ELVRWQ
Trigger: TTGCCACCTCACCAATTCCCACTGAAGACCAGTTCT...AAAGCCTTTGGCTAGTGGCATTGACCAGTCATCTGGATTCCAACCATGTAATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CTTAAGTCAGGTGACAGTGTCAGAGAACAGGACTCCCAGGACCCCAGGCAACTGATATGTTTAAAGAACTaGTCTTCAGTGGGAATTGGT +
Preference number: 4 (lower is better)
Translates to: LKSGDSVREQDSQDPRQLICLKN*SSVGIG
Trigger: ACCAATTCCCACTGAAGACCAGTTCTTTAAACATAT...CAGTTGCCTGGGGTCCTGGGAGTCCTGTTCTCTGACACTGTCACCTGACTTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTAAGTCAGGTCTTTACCCAGCTGTaGGAGAATCTGCCCCAAAGC +
Preference number: 4 (lower is better)
Translates to: DFQKSCSEIICPKGHLSQVFTQL*ENLPQS
Trigger: GCTTTGGGGCAGATTCTCCCACAGCTGGGTAAAGAC...CTGACTTAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GCATTACATGGTTGGAATCCAGATGACTGGTCAATGCCACTAGCCAAAGGCTTTTCTATCACTTCCCTGTaGAAGGCAGAGAACAAGCTG +
Preference number: 4 (lower is better)
Translates to: ALHGWNPDDWSMPLAKGFSITSL*KAENKL
Trigger: CAGCTTGTTCTCTGCCTTCCACAGGGAAGTGATAGA...AAAGCCTTTGGCTAGTGGCATTGACCAGTCATCTGGATTCCAACCATGTAATGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp ACAGTAGCATCCTTTTCAACTTCTCTTATGAGGCTGTCTTCACTGGGAATTACCCAATCACTTTCTCCTTaGACCTCAGGACACCCAGCT +
Preference number: 4 (lower is better)
Translates to: TVASFSTSLMRLSSLGITQSLSP*TSGHPA
Trigger: AGCTGGGTGTCCTGAGGTCCAAGGAGAAAGTGATTG...GGTAATTCCCAGTGAAGACAGCCTCATAAGAGAAGTTGAAAAGGATGCTACTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CCA 90 bp CATAACTCTCCCTGGTGCCATCTGCTCCAACATTTGACAAGAGCACTTAACGAGTGGGAATTGGTGAGGTaGCAAGATAAGCAGGTAATT +
Preference number: 4 (lower is better)
Translates to: HNSPWCHLLQHLTRALNEWELVR*QDKQVI
Trigger: AATTACCTGCTTATCTTGCCACCTCACCAATTCCCA...CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AGCCACTGCCTTCTTTGTGATTCAAACCAAGGTCTCACCATCACTCCAGACATGAATCGTAGCTGTCCTTaGATGATAGTCATACCGTTC +
Preference number: 4 (lower is better)
Translates to: SHCLLCDSNQGLTITPDMNRSCP*MIVIPF
Trigger: GAACGGTATGACTATCATCCAAGGACAGCTACGATT...CATGTCTGGAGTGATGGTGAGACCTTGGTTTGAATCACAAAGAAGGCAGTGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AACTCCGACTTGTGTGTAAGCATAGACATCGTTGGGACGGTTTCCAAAGGCAGCTCGACCAGATTTCTTTaGCATCTTGTCTTTAACCCA +
Preference number: 4 (lower is better)
Translates to: NSDLCVSIDIVGTVSKGSSTRFL*HLVFNP
Trigger: TGGGTTAAAGACAAGATGCCAAAGAAATCTGGTCGA...GCTGCCTTTGGAAACCGTCCCAACGATGTCTATGCTTACACACAAGTCGGAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
3UTR CAA 72 bp GCTGCATCACTCAGTTGCTTACACAGGGCTCTAGGTTaGGGTTTCACTATGGTACAGGTAGTATCTTCAACA +
Preference number: 4 (lower is better)
Translates to: AASLSCLHRALG*GFTMVQVVSST
Trigger: TGTTGAAGATACTACCTGTACCATAGTGAAACCCAAACCTAGAGCCCTGTGTAAGCAACTGAGTGATGCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR TCA 90 bp GCTCTAGGTTTGGGTTTCACTATGGTACAGGTAGTATCTTCAACAGTAGCATCCTCACAGAACTCTGAGTaGAAACTGCCTCTGATTCCA +
Preference number: 4 (lower is better)
Translates to: ALGLGFTMVQVVSSTVASSQNSE*KLPLIP
Trigger: TGGAATCAGAGGCAGTTTTCACTCAGAGTTCTGTGA...GGATGCTACTGTTGAAGATACTACCTGTACCATAGTGAAACCCAAACCTAGAGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR TCA 90 bp AGTCTGGAACTCCGACTTGTGTGTAAGCATAGACATCGTTGGGACGGTTTCCAATTAGGCAAACTCTTCTaGAATACCTGTAAGCTAAGG +
Preference number: 4 (lower is better)
Translates to: SLELRLVCKHRHRWDGFQLGKLF*NTCKLR
Trigger: CCTTAGCTTACAGGTATTTCAGAAGAGTTTGCCTAA...TTGGAAACCGTCCCAACGATGTCTATGCTTACACACAAGTCGGAGTTCCAGACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
CDS-3UTR TCA 90 bp AACTGGCGAGAACGTCACATGAACATAGCCAAGTTTCCCTACTACCTAACACAAAATTCTGCTCCTTACTaGGAAGTGGGAACACGTGTT +
Preference number: 4 (lower is better)
Translates to: NWRERHMNIAKFPYYLTQNSAPY*EVGTRV
Trigger: AACACGTGTTCCCACTTCTCAGTAAGGAGCAGAATT...TTGTGTTAGGTAGTAGGGAAACTTGGCTATGTTCATGTGACGTTCTCGCCAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AGTTGCTTACACAGGGCTCTAGGTTTGGGTTTCACTATGGTACAGGTAGTATCTGGCCCACATAATTCATaGTTTGAGACAGAATCCCAG +
Preference number: 4 (lower is better)
Translates to: SCLHRALGLGFTMVQVVSGPHNS*FETESQ
Trigger: CTGGGATTCTGTCTCAAACCATGAATTATGTGGGCC...AGATACTACCTGTACCATAGTGAAACCCAAACCTAGAGCCCTGTGTAAGCAACT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CCA 90 bp ACTTCTCTTATGAGGCTGTCTTCACTGGGAATTACCCTGAAATGTGTGTTCTCTAGAACTGGTCTTCAGTaGGAATTGGTGAGGTGGCAA +
Preference number: 4 (lower is better)
Translates to: TSLMRLSSLGITLKCVFSRTGLQ*ELVRWQ
Trigger: TTGCCACCTCACCAATTCCCACTGAAGACCAGTTCT...AGAGAACACACATTTCAGGGTAATTCCCAGTGAAGACAGCCTCATAAGAGAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CCA 90 bp GACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTAAGTCAGTCTATCACTTCCCTGTaGAAGGCAGAGAACAAGCTG +
Preference number: 4 (lower is better)
Translates to: DFQKSCSEIICPKGHLSQSITSL*KAENKL
Trigger: CAGCTTGTTCTCTGCCTTCCACAGGGAAGTGATAGA...CTGACTTAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp CTTCATCAGCTGAATGGAATCATTAGCAGGGAACTCTTTCCTCTGCCTTCAGGTCCTTTGGTCCTCTCTTaGATTAATTCACCCTTTGGA +
Preference number: 4 (lower is better)
Translates to: LHQLNGIISRELFPLPSGPLVLS*INSPFG
Trigger: TCCAAAGGGTGAATTAATCCAAGAGAGGACCAAAGG...ACCTGAAGGCAGAGGAAAGAGTTCCCTGCTAATGATTCCATTCAGCTGATGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp TTACACAGGGCTCTAGGTTTGGGTTTCACTATGGTACAGGTAGTATCTTCAACAAAGATCCTTGCTGCCTaGGCTCTCTTCTCATCATCT +
Preference number: 4 (lower is better)
Translates to: LHRALGLGFTMVQVVSSTKILAA*ALFSSS
Trigger: AGATGATGAGAAGAGAGCCCAGGCAGCAAGGATCTT...TGTTGAAGATACTACCTGTACCATAGTGAAACCCAAACCTAGAGCCCTGTGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR TCA 90 bp CATGAACATAGCCAAGTTTCCCTACTACCTAACACAAGTAACTCACGGAGCAGACCACAGCACTGCCATTaGTTTCTATGTCAATCACTT +
Preference number: 4 (lower is better)
Translates to: HEHSQVSLLPNTSNSRSRPQHCH*FLCQSL
Trigger: AAGTGATTGACATAGAAATCAATGGCAGTGCTGTGG...TCTGCTCCGTGAGTTACTTGTGTTAGGTAGTAGGGAAACTTGGCTATGTTCATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp TTACACAGGGCTCTAGGTTTGGGTTTCACTATGGTACAGGTAGTATCTTCAACAAGTGAAAACTGCCTCTaGTTCCAAGGTGTGAGAAAC +
Preference number: 4 (lower is better)
Translates to: LHRALGLGFTMVQVVSSTSENCL*FQGVRN
Trigger: GTTTCTCACACCTTGGAATCAGAGGCAGTTTTCACT...TGTTGAAGATACTACCTGTACCATAGTGAAACCCAAACCTAGAGCCCTGTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CCA 90 bp GACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTAAGTCAGTCCCTCCTTGGTCTCTaGCAACTGTTTGATCATACT +
Preference number: 4 (lower is better)
Translates to: DFQKSCSEIICPKGHLSQSLLGL*QLFDHT
Trigger: AGTATGATCAAACAGTTGCCAGAGACCAAGGAGGGA...CTGACTTAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AACTCTTTACTTTTGTGTAGCAATGTGCTGGTCTATTCTTTTTCAGTTTCTGGTAGTTCCACAGGTAGATaGTCCCTGCACACCGACAGG +
Preference number: 4 (lower is better)
Translates to: NSLLLCSNVLVYSFSVSGSSTGR*SLHTDR
Trigger: CCTGTCGGTGTGCAGGGACCATCTACCTGTGGAACT...ACCAGAAACTGAAAAAGAATAGACCAGCACATTGCTACACAAAAGTAAAGAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp AACTCTTTACTTTTGTGTAGCAATGTGCTGGTCTATTCTTTTTCAGTTTCTGGTCCCAGAATGGAAGAGTaGAGGCTCCTTGTAGTCCTC +
Preference number: 4 (lower is better)
Translates to: NSLLLCSNVLVYSFSVSGPRMEE*RLLVVL
Trigger: GAGGACTACAAGGAGCCTTCACTCTTCCATTCTGGG...ACCAGAAACTGAAAAAGAATAGACCAGCACATTGCTACACAAAAGTAAAGAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp AGCCCAGACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTATTAGGCAAACTCTTCTaGAATACCTGTAAGCTAAGG +
Preference number: 4 (lower is better)
Translates to: SPDFQKSCSEIICPKGHLLGKLF*NTCKLR
Trigger: CCTTAGCTTACAGGTATTTCAGAAGAGTTTGCCTAA...TAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTCTGGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp TCAACTTCTCTTATGAGGCTGTCTTCACTGGGAATTACCCTGAAATGTGTGTTCTGGGAATTGGTGAGGTaGCAAGATAAGCAGGTAATT +
Preference number: 4 (lower is better)
Translates to: STSLMRLSSLGITLKCVFWELVR*QDKQVI
Trigger: AATTACCTGCTTATCTTGCCACCTCACCAATTCCCA...GAACACACATTTCAGGGTAATTCCCAGTGAAGACAGCCTCATAAGAGAAGTTGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CCA 90 bp AGCCACTGCCTTCTTTGTGATTCAAACCAAGGTCTCACCATCACTCCAGACATGATATGTTTAAAGAACTaGTCTTCAGTGGGAATTGGT +
Preference number: 4 (lower is better)
Translates to: SHCLLCDSNQGLTITPDMICLKN*SSVGIG
Trigger: ACCAATTCCCACTGAAGACCAGTTCTTTAAACATAT...CATGTCTGGAGTGATGGTGAGACCTTGGTTTGAATCACAAAGAAGGCAGTGGCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GCAACAAGCCATCCAGGGGTTTGTGTGCAAACACACTTAAGGGCATCTCTCTTTATGATTTGTTCCCTTTaGTCCTCTCTTGGATTAATT +
Preference number: 4 (lower is better)
Translates to: ATSHPGVCVQTHLRASLFMICSL*SSLGLI
Trigger: AATTAATCCAAGAGAGGACCAAAGGGAACAAATCAT...AAAGAGAGATGCCCTTAAGTGTGTTTGCACACAAACCCCTGGATGGCTTGTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp CACTATGGTACAGGTAGTATCTTCAACAGTAGCATCCTTTTCAACTTCTCTTATGAAACGTCTGAACTCTaGGCTGGCCTTTCATTTCCA +
Preference number: 4 (lower is better)
Translates to: HYGTGSIFNSSILFNFSYETSEL*AGLSFP
Trigger: TGGAAATGAAAGGCCAGCTCAGAGTTCAGACGTTTC...ATAAGAGAAGTTGAAAAGGATGCTACTGTTGAAGATACTACCTGTACCATAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR TCA 90 bp AACTCTTTACTTTTGTGTAGCAATGTGCTGGTCTATTCTTTTTCAGTTTCTGGTACAGACTGTGGGGACTaGGAACCAGAGAATGTGTCA +
Preference number: 4 (lower is better)
Translates to: NSLLLCSNVLVYSFSVSGTDCGD*EPENVS
Trigger: TGACACATTCTCTGGTTCTCAGTCCCCACAGTCTGT...ACCAGAAACTGAAAAAGAATAGACCAGCACATTGCTACACAAAAGTAAAGAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR GCA 90 bp AACTCTTTACTTTTGTGTAGCAATGTGCTGGTCTATTCTTTTTCAGTTTCTGGTGGAAGGCAGGTCATTTaGTGGAGGGACCTCAGATTT +
Preference number: 4 (lower is better)
Translates to: NSLLLCSNVLVYSFSVSGGRQVI*WRDLRF
Trigger: AAATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCC...ACCAGAAACTGAAAAAGAATAGACCAGCACATTGCTACACAAAAGTAAAGAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTAAGTCAGTCGACCAGATTTCTTTaGCATCTTGTCTTTAACCCA +
Preference number: 4 (lower is better)
Translates to: DFQKSCSEIICPKGHLSQSTRFL*HLVFNP
Trigger: TGGGTTAAAGACAAGATGCCAAAGAAATCTGGTCGA...CTGACTTAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp AACTCTTTACTTTTGTGTAGCAATGTGCTGGTCTATTCTTTTTCAGTTTCTGGTGCTGAACTCTGGGCATaGAAAGGCAGAATTCTGCTC +
Preference number: 4 (lower is better)
Translates to: NSLLLCSNVLVYSFSVSGAELWA*KGRILL
Trigger: GAGCAGAATTCTGCCTTTCCATGCCCAGAGTTCAGC...ACCAGAAACTGAAAAAGAATAGACCAGCACATTGCTACACAAAAGTAAAGAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR TCA 90 bp ACATTTCTTTTTCCAACTGACTATGCAGATGGGTTAGACTACAGGAACTGCAGTTTAGGCAAACTCTTCTaGAATACCTGTAAGCTAAGG +
Preference number: 4 (lower is better)
Translates to: TFLFPTDYADGLDYRNCSLGKLF*NTCKLR
Trigger: CCTTAGCTTACAGGTATTTCAGAAGAGTTTGCCTAA...ACTGCAGTTCCTGTAGTCTAACCCATCTGCATAGTCAGTTGGAAAAAGAAATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CCA 90 bp GCTCTAGGTTTGGGTTTCACTATGGTACAGGTAGTATCTTCAACAGTAGCATCCATATGTTTAAAGAACTaGTCTTCAGTGGGAATTGGT +
Preference number: 4 (lower is better)
Translates to: ALGLGFTMVQVVSSTVASICLKN*SSVGIG
Trigger: ACCAATTCCCACTGAAGACCAGTTCTTTAAACATAT...GGATGCTACTGTTGAAGATACTACCTGTACCATAGTGAAACCCAAACCTAGAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CAA 90 bp GGTGACCTTGGTGGACTCTGGGAACCCGCCCCACGTCCACTCCATGTGCGGCTCTCAATCACTTTCTCCTaGGACCTCAGGACACCCAGC +
Preference number: 5 (lower is better)
Translates to: GDLGGLWEPAPRPLHVRLSITFS*DLRTPS
Trigger: GCTGGGTGTCCTGAGGTCCAAGGAGAAAGTGATTGA...GAGCCGCACATGGAGTGGACGTGGGGCGGGTTCCCAGAGTCCACCAAGGTCACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS GCA 90 bp GGGTTACATCAGGCAAGTCCATGGCAGAGTCTGAGAGGCATTCAGTaGCACTGTCCGCAGCTGCACTCCCCACAGACTGTGGGGACTGAG +
Preference number: 5 (lower is better)
Translates to: GLHQASPWQSLRGIQ*HCPQLHSPQTVGTE
Trigger: CTCAGTCCCCACAGTCTGTGGGGAGTGCAGCTGCGGACAGTGGCACTGAATGCCTCTCAGACTCTGCCATGGACTTGCCTGATGTAACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS CCA 90 bp GAGGCATTCAGTGCCACTGTCCGCAGCTGCACTCCCCACAGACTGTaGGGACTGAGAACCAGAGAATGTGTCAGACTCAGGCCACTGCCT +
Preference number: 5 (lower is better)
Translates to: EAFSATVRSCTPHRL*GLRTRECVRLRPLP
Trigger: AGGCAGTGGCCTGAGTCTGACACATTCTCTGGTTCTCAGTCCCCACAGTCTGTGGGGAGTGCAGCTGCGGACAGTGGCACTGAATGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp GGAGGGTGTGCACGCAGAGCTGGCAGCACTAACTGGACCTCTGGAGAAAGCCCTCATTTGAAGATCCTCTaGCTGCCTGGGCTCTCTTCT +
Preference number: 5 (lower is better)
Translates to: GGCARRAGSTNWTSGESPHLKIL*LPGLSS
Trigger: AGAAGAGAGCCCAGGCAGCAAGAGGATCTTCAAATG...AGGGCTTTCTCCAGAGGTCCAGTTAGTGCTGCCAGCTCTGCGTGCACACCCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp TGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGAAAGCAGGTTCCTGACTGTCAGCCACAGGGCTCTAGGTTaGGGTTTCACTATGGTACAG +
Preference number: 5 (lower is better)
Translates to: CQLRVPVPVLESRFLTVSHRALG*GFTMVQ
Trigger: CTGTACCATAGTGAAACCCAAACCTAGAGCCCTGTG...GCTGACAGTCAGGAACCTGCTTTCCAGAACAGGGACGGGGACCCGAAGCTGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp TCCCAGGACCCCAGGCAACTGCCCTTCTACACTTCTGAGAAGCCACTGCCTTCTCGCTGCATCACTCAGTaGCTTACACAGGGCTCTAGG +
Preference number: 5 (lower is better)
Translates to: SQDPRQLPFYTSEKPLPSRCITQ*LTQGSR
Trigger: CCTAGAGCCCTGTGTAAGCAACTGAGTGATGCAGCG...AGAAGGCAGTGGCTTCTCAGAAGTGTAGAAGGGCAGTTGCCTGGGGTCCTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp CACTTAACGAGGCCAGTGTCTGAGGCCGCCAGGGAGGTGCGGGGGTACCCCACAGATTTCTTTGGCATCTaGTCTTTAACCCAGGACTCA +
Preference number: 5 (lower is better)
Translates to: HLTRPVSEAAREVRGYPTDFFGI*SLTQDS
Trigger: TGAGTCCTGGGTTAAAGACAAGATGCCAAAGAAATC...TGTGGGGTACCCCCGCACCTCCCTGGCGGCCTCAGACACTGGCCTCGTTAAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS GCA 90 bp AGGTCTGGCACTGGTTGGCTCCTCAGCATTGGAAGGCAGGTCATTTaGTGGAGGGACCTCAGATTTTCCCTCCTTGGTCTCTGGCAACTG +
Preference number: 5 (lower is better)
Translates to: RSGTGWLLSIGRQVI*WRDLRFSLLGLWQL
Trigger: CAGTTGCCAGAGACCAAGGAGGGAAAATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAACCAGTGCCAGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS GCA 90 bp ACACCTGGCACTGGTTGGCTCCTCAGCATTGGAAGGCAGGTCATTTaGTGGAGGGACCTCAGATTTTCCCTCCTTGGTCTCTGGCAACTG +
Preference number: 5 (lower is better)
Translates to: TPGTGWLLSIGRQVI*WRDLRFSLLGLWQL
Trigger: CAGTTGCCAGAGACCAAGGAGGGAAAATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAACCAGTGCCAGGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
CDS-3UTR CAA 90 bp CTTAAGTCAGGTGACAGTGTCAGAGAACAGGACTCCCAGGACCCCAGGCAACTGTCTCTTTTGGTGACCTaGGTGGACTCTGGGAACCCG +
Preference number: 5 (lower is better)
Translates to: LKSGDSVREQDSQDPRQLSLLVT*VDSGNP
Trigger: CGGGTTCCCAGAGTCCACCAAGGTCACCAAAAGAGA...CAGTTGCCTGGGGTCCTGGGAGTCCTGTTCTCTGACACTGTCACCTGACTTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp CTCATCTGCACTATCAACTGCATGAGGGTGAGTCAGAGTGATGGGCTGCTGCTGCAGGTCTGGCACTGGTaGGCTCCTCAGCATTGGAAG +
Preference number: 5 (lower is better)
Translates to: LICTINCMRVSQSDGLLLQVWHW*APQHWK
Trigger: CTTCCAATGCTGAGGAGCCAACCAGTGCCAGACCTG...CAGCAGCAGCCCATCACTCTGACTCACCCTCATGCAGTTGATAGTGCAGATGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS GCA 90 bp TTTAGGTATATGCATGTTTTGCCTGATATATGGCTGTGTGCCTGGTaGCCACAGAGGCCAGAAGAGGGCGTTGGGTCCCCGGGCACTAGA +
Preference number: 5 (lower is better)
Translates to: FRYMHVLPDIWLCAW*PQRPEEGVGSPGTR
Trigger: TCTAGTGCCCGGGGACCCAACGCCCTCTTCTGGCCTCTGTGGGCACCAGGCACACAGCCATATATCAGGCAAAACATGCATATACCTAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156570.8
CDS CCA 90 bp CCTGGCACTGGTTGGCTCCTCAGCATTGGAAGGCAGGTCATTTGCTaGAGGGACCTCAGATTTTCCCTCCTTGGTCTCTGGCAACTGTTT +
Preference number: 5 (lower is better)
Translates to: PGTGWLLSIGRQVIC*RDLRFSLLGLWQLF
Trigger: AAACAGTTGCCAGAGACCAAGGAGGGAAAATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAACCAGTGCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
CDS-3UTR CAA 90 bp CTTAAGTCAGGTGACAGTGTCAGAGAACAGGACTCCCAGGACCCCAGGCAACTGGTTGGCTCCTCAGCATaGGAAGGCAGGTCATTTGCT +
Preference number: 5 (lower is better)
Translates to: LKSGDSVREQDSQDPRQLVGSSA*EGRSFA
Trigger: AGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAAC...CAGTTGCCTGGGGTCCTGGGAGTCCTGTTCTCTGACACTGTCACCTGACTTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTCAGGTCTGGCACTGGTaGGCTCCTCAGCATTGGAAG +
Preference number: 5 (lower is better)
Translates to: VHNSTEARESPQVKECRLQVWHW*APQHWK
Trigger: CTTCCAATGCTGAGGAGCCAACCAGTGCCAGACCTG...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp CGTCATTGGGGCCATCATGGAGCTTCAGTTTTGCTATCTGGTCCGAGGAGAGTCAACACCTGGCACTGGTaGGCTCCTCAGCATTGGAAG +
Preference number: 5 (lower is better)
Translates to: RHWGHHGASVLLSGPRRVNTWHW*APQHWK
Trigger: CTTCCAATGCTGAGGAGCCAACCAGTGCCAGGTGTT...GACTCTCCTCGGACCAGATAGCAAAACTGAAGCTCCATGATGGCCCCAATGACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
CDS CCA 90 bp TCTGGCACTGGTTGGCTCCTCAGCATTGGAAGGCAGGTCATTTGCTaGAGGGACCTCAGATTTTCCCTCCTTGGTCTCTGGCAACTGTTT +
Preference number: 5 (lower is better)
Translates to: SGTGWLLSIGRQVIC*RDLRFSLLGLWQLF
Trigger: AAACAGTTGCCAGAGACCAAGGAGGGAAAATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAACCAGTGCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS CCA 90 bp AAGTGTCATTCTCTGCAGGTCTGGCACTGGTTGGCTCCTCAGCATTaGAAGGCAGGTCATTTGCTGGAGGGACCTCAGATTTTCCCTCCT +
Preference number: 5 (lower is better)
Translates to: KCHSLQVWHWLAPQH*KAGHLLEGPQIFPP
Trigger: AGGAGGGAAAATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAACCAGTGCCAGACCTGCAGAGAATGACACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp CGAACTCAGATGGATTTCTTAGTAACTGCCCACACCCAGCTGGGCAAGGCTCTGTCAATCACTTTCTCCTaGGACCTCAGGACACCCAGC +
Preference number: 5 (lower is better)
Translates to: RTQMDFLVTAHTQLGKALSITFS*DLRTPS
Trigger: GCTGGGTGTCCTGAGGTCCAAGGAGAAAGTGATTGA...CAGAGCCTTGCCCAGCTGGGTGTGGGCAGTTACTAAGAAATCCATCTGAGTTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp TGCCAGCTTCGGGTCCCCGTCCCTGTTCTGGAAAGCAGGTTCCTGACTGTCAGCTCCACAGCACTGCCATaGATTTCTATGTCAATCACT +
Preference number: 5 (lower is better)
Translates to: CQLRVPVPVLESRFLTVSSTALP*ISMSIT
Trigger: AGTGATTGACATAGAAATCAATGGCAGTGCTGTGGA...GCTGACAGTCAGGAACCTGCTTTCCAGAACAGGGACGGGGACCCGAAGCTGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp GCAGCTGGTTTGGGTTCTGAGGGAGCCTCTGCTGATGGGCTGGGAACAGGGTCTTCCACAGCACTGCCATaGATTTCTATGTCAATCACT +
Preference number: 5 (lower is better)
Translates to: AAGLGSEGASADGLGTGSSTALP*ISMSIT
Trigger: AGTGATTGACATAGAAATCAATGGCAGTGCTGTGGA...AGACCCTGTTCCCAGCCCATCAGCAGAGGCTCCCTCAGAACCCAAACCAGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CAA 90 bp GAAAGCAGGTTCCTGACTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGGCCAGTGGTCTTCAGTGGGAATaGGTGAGGTGGCAAGATAAG +
Preference number: 5 (lower is better)
Translates to: ESRFLTVSSWVFLCKRASGLQWE*VRWQDK
Trigger: CTTATCTTGCCACCTCACCAATTCCCACTGAAGACC...ACTGGCCCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp GTTCTGAGGGAGCCTCTGCTGATGGGCTGGGAACAGGGTCTGCATCTAATAACGGGTCTTCAGTGGGAATaGGTGAGGTGGCAAGATAAG +
Preference number: 5 (lower is better)
Translates to: VLREPLLMGWEQGLHLITGLQWE*VRWQDK
Trigger: CTTATCTTGCCACCTCACCAATTCCCACTGAAGACC...CGTTATTAGATGCAGACCCTGTTCCCAGCCCATCAGCAGAGGCTCCCTCAGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CAA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTTCTCTTTTGGTGACCTaGGTGGACTCTGGGAACCCG +
Preference number: 5 (lower is better)
Translates to: VHNSTEARESPQVKECRLSLLVT*VDSGNP
Trigger: CGGGTTCCCAGAGTCCACCAAGGTCACCAAAAGAGA...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp CGTCATTGGGGCCATCATGGAGCTTCAGTTTTGCTATCTGGTCCGAGGAGAGTCGTTGGCTCCTCAGCATaGGAAGGCAGGTCATTTGCT +
Preference number: 5 (lower is better)
Translates to: RHWGHHGASVLLSGPRRVVGSSA*EGRSFA
Trigger: AGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAAC...GACTCTCCTCGGACCAGATAGCAAAACTGAAGCTCCATGATGGCCCCAATGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
CDS-3UTR CAA 90 bp TCCCAGGACCCCAGGCAACTGCCCTTCTACACTTCTGAGAAGCCACTGCCTTCTGTGATGGGGTCAACTTaGATGCTTTCTTCCAACTCC +
Preference number: 5 (lower is better)
Translates to: SQDPRQLPFYTSEKPLPSVMGST*MLSSNS
Trigger: GGAGTTGGAAGAAAGCATCAAAGTTGACCCCATCAC...AGAAGGCAGTGGCTTCTCAGAAGTGTAGAAGGGCAGTTGCCTGGGGTCCTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp AGCCACTGCCTTCTTTGTGATTCAAACCAAGGTCTCACCATCACTCCAGACATGGGTCCAGGTCAGGGATaGGGTCTCGCCAGTAGCAGA +
Preference number: 5 (lower is better)
Translates to: SHCLLCDSNQGLTITPDMGPGQG*GLASSR
Trigger: TCTGCTACTGGCGAGACCCAATCCCTGACCTGGACC...CATGTCTGGAGTGATGGTGAGACCTTGGTTTGAATCACAAAGAAGGCAGTGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp ACTACGTGCCTCCAGGGCTTGCCACGGACAACTATGTTTCAAATGGTCTTTTTCGGTCCAGGTCAGGGATaGGGTCTCGCCAGTAGCAGA +
Preference number: 5 (lower is better)
Translates to: TTCLQGLPRTTMFQMVFFGPGQG*GLASSR
Trigger: TCTGCTACTGGCGAGACCCAATCCCTGACCTGGACC...GAAAAAGACCATTTGAAACATAGTTGTCCGTGGCAAGCCCTGGAGGCACGTAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp GAAAGCAGGTTCCTGACTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGGCCAGTTCATACCGTTCTCTTTaGGTGACCTTGGTGGACTCT +
Preference number: 5 (lower is better)
Translates to: ESRFLTVSSWVFLCKRASSYRSL*VTLVDS
Trigger: AGAGTCCACCAAGGTCACCAAAAGAGAACGGTATGA...ACTGGCCCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp GAAAGCAGGTTCCTGACTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGGCCAGTGTCTGGAACTCCGACTaGTGTGTAAGCATAGACATC +
Preference number: 5 (lower is better)
Translates to: ESRFLTVSSWVFLCKRASVWNSD*CVSIDI
Trigger: GATGTCTATGCTTACACACAAGTCGGAGTTCCAGAC...ACTGGCCCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS TCA 90 bp GAAGCATTTGAAGATCCTTGCTGCCTGGGCTCTCTTCTCATCATCTaGGCTCACACCCACATCACCTACATCTTCTGCAACAGGGGAAGC +
Preference number: 5 (lower is better)
Translates to: EAFEDPCCLGSLLII*AHTHITYIFCNRGS
Trigger: GCTTCCCCTGTTGCAGAAGATGTAGGTGATGTGGGTGTGAGCTCAGATGATGAGAAGAGAGCCCAGGCAGCAAGGATCTTCAAATGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS GCA 90 bp CTCACACCCACATCACCTACATCTTCTGCAACAGGGGAAGCTGCCTaGTCCTCCTTCCTATTGTCCTGTTTGCACTTCTTTCTCCTTCGT +
Preference number: 5 (lower is better)
Translates to: LTPTSPTSSATGEAA*SSFLLSCLHFFLLR
Trigger: ACGAAGGAGAAAGAAGTGCAAACAGGACAATAGGAAGGAGGAGCAGGCAGCTTCCCCTGTTGCAGAAGATGTAGGTGATGTGGGTGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
ENSMUST00000135589.8
ENSMUST00000156570.8
CDS-3UTR CAA 90 bp GTACACAACTCCACAGAAGCACGTGAGAGCCCACAAGTAAAGGAGTGCAGGCTTTCCAGACAACGTGGCTaGGTTAATGCCCTTGTAGAG +
Preference number: 5 (lower is better)
Translates to: VHNSTEARESPQVKECRLSRQRG*VNALVE
Trigger: CTCTACAAGGGCATTAACCAAGCCACGTTGTCTGGA...AAGCCTGCACTCCTTTACTTGTGGGCTCTCACGTGCTTCTGTGGAGTTGTGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp CTTAAGTCAGGTGACAGTGTCAGAGAACAGGACTCCCAGGACCCCAGGCAACTGTGCTCCTCCTTCCTATaGTCCTGTTTGCACTTCTTT +
Preference number: 5 (lower is better)
Translates to: LKSGDSVREQDSQDPRQLCSSFL*SCLHFF
Trigger: AAAGAAGTGCAAACAGGACAATAGGAAGGAGGAGCA...CAGTTGCCTGGGGTCCTGGGAGTCCTGTTCTCTGACACTGTCACCTGACTTAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp GCAACAAGCCATCCAGGGGTTTGTGTGCAAACACACTTAAGGGCATCTCTCTTTCGCTGCATCACTCAGTaGCTTACACAGGGCTCTAGG +
Preference number: 5 (lower is better)
Translates to: ATSHPGVCVQTHLRASLFRCITQ*LTQGSR
Trigger: CCTAGAGCCCTGTGTAAGCAACTGAGTGATGCAGCG...AAAGAGAGATGCCCTTAAGTGTGTTTGCACACAAACCCCTGGATGGCTTGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp GAAAGCAGGTTCCTGACTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGGCCAGTCATCAGACTTGGTTATaGTTCCGTCGATGTCAGAGA +
Preference number: 5 (lower is better)
Translates to: ESRFLTVSSWVFLCKRASHQTWL*FRRCQR
Trigger: TCTCTGACATCGACGGAACAATAACCAAGTCTGATG...ACTGGCCCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp AGGAGCCTCTCTCTCCCAGGCCTCCATGACTGCATTACATGGTTGGAATCCAGACACATAATTCATGGTTaGAGACAGAATCCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: RSLSLPGLHDCITWLESRHIIHG*RQNPRR
Trigger: CCTCCTGGGATTCTGTCTCAAACCATGAATTATGTG...TCTGGATTCCAACCATGTAATGCAGTCATGGAGGCCTGGGAGAGAGAGGCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000126681.8
CDS-3UTR CAA 90 bp GAAAGCAGGTTCCTGACTGTCAGCTCCTGGGTCTTCCTCTGTAAGAGGGCCAGTTTCCTATTGTCCTGTTaGCACTTCTTTCTCCTTCGT +
Preference number: 5 (lower is better)
Translates to: ESRFLTVSSWVFLCKRASFLLSC*HFFLLR
Trigger: ACGAAGGAGAAAGAAGTGCAAACAGGACAATAGGAA...ACTGGCCCTCTTACAGAGGAAGACCCAGGAGCTGACAGTCAGGAACCTGCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS GCA 90 bp GGCCCACATAATTCATGGTTTGAGACAGAATCCCAGGAGGGGCCTTaGCATGGTAAACACTTGCAGGTTTACTCAACGAGCTTTCCTGAA +
Preference number: 5 (lower is better)
Translates to: GPHNSWFETESQEGP*HGKHLQVYSTSFPE
Trigger: TTCAGGAAAGCTCGTTGAGTAAACCTGCAAGTGTTTACCATGGCAAGGCCCCTCCTGGGATTCTGTCTCAAACCATGAATTATGTGGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000135589.8
CDS-3UTR CAA 90 bp CATAACTCTCCCTGGTGCCATCTGCTCCAACATTTGACAAGAGCACTTAACGAGTCCAGACAACGTGGCTaGGTTAATGCCCTTGTAGAG +
Preference number: 5 (lower is better)
Translates to: HNSPWCHLLQHLTRALNESRQRG*VNALVE
Trigger: CTCTACAAGGGCATTAACCAAGCCACGTTGTCTGGA...CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp CTCATCTGCACTATCAACTGCATGAGGGTGAGTCAGAGTGATGGGCTGCTGCTGTTCCTATTGTCCTGTTaGCACTTCTTTCTCCTTCGT +
Preference number: 5 (lower is better)
Translates to: LICTINCMRVSQSDGLLLFLLSC*HFFLLR
Trigger: ACGAAGGAGAAAGAAGTGCAAACAGGACAATAGGAA...CAGCAGCAGCCCATCACTCTGACTCACCCTCATGCAGTTGATAGTGCAGATGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp GCAACAAGCCATCCAGGGGTTTGTGTGCAAACACACTTAAGGGCATCTCTCTTTCACAGGGCTCTAGGTTaGGGTTTCACTATGGTACAG +
Preference number: 5 (lower is better)
Translates to: ATSHPGVCVQTHLRASLFHRALG*GFTMVQ
Trigger: CTGTACCATAGTGAAACCCAAACCTAGAGCCCTGTG...AAAGAGAGATGCCCTTAAGTGTGTTTGCACACAAACCCCTGGATGGCTTGTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS CCA 90 bp TGTAGTCCTCTTCCTTTAAGGAAGCATTTGAAGATCCTTGCTGCCTaGGCTCTCTTCTCATCATCTGAGCTCACACCCACATCACCTACA +
Preference number: 5 (lower is better)
Translates to: CSPLPLRKHLKILAA*ALFSSSELTPTSPT
Trigger: TGTAGGTGATGTGGGTGTGAGCTCAGATGATGAGAAGAGAGCCCAGGCAGCAAGGATCTTCAAATGCTTCCTTAAAGGAAGAGGACTACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CAA 90 bp AGCTCGGGTCCTGGTCCACTCTACATTGTTTTAGCAGCTTTTGTTCTACGTTACGGTCTTCAGTGGGAATaGGTGAGGTGGCAAGATAAG +
Preference number: 5 (lower is better)
Translates to: SSGPGPLYIVLAAFVLRYGLQWE*VRWQDK
Trigger: CTTATCTTGCCACCTCACCAATTCCCACTGAAGACC...GTAACGTAGAACAAAAGCTGCTAAAACAATGTAGAGTGGACCAGGACCCGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp AACTGGCGAGAACGTCACATGAACATAGCCAAGTTTCCCTACTACCTAACACAAGTTGGCTCCTCAGCATaGGAAGGCAGGTCATTTGCT +
Preference number: 5 (lower is better)
Translates to: NWRERHMNIAKFPYYLTQVGSSA*EGRSFA
Trigger: AGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAAC...TTGTGTTAGGTAGTAGGGAAACTTGGCTATGTTCATGTGACGTTCTCGCCAGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS CCA 90 bp CAACGCCCAGTTGTAGTAACGGTTATATATCCGGATCACGAGGTTTaGGTTGTCGATAAGGCCAGGGTTTTCTGCAAACTCATGGTAAGT +
Preference number: 5 (lower is better)
Translates to: QRPVVVTVIYPDHEV*VVDKARVFCKLMVS
Trigger: ACTTACCATGAGTTTGCAGAAAACCCTGGCCTTATCGACAACCCAAACCTCGTGATCCGGATATATAACCGTTACTACAACTGGGCGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp TCAAGAGGTGATTCGGGAAGCTCAGTAGACGCTGCATCACTCAGTTGCTTACACTTCCTATTGTCCTGTTaGCACTTCTTTCTCCTTCGT +
Preference number: 5 (lower is better)
Translates to: SRGDSGSSVDAASLSCLHFLLSC*HFFLLR
Trigger: ACGAAGGAGAAAGAAGTGCAAACAGGACAATAGGAA...GTGTAAGCAACTGAGTGATGCAGCGTCTACTGAGCTTCCCGAATCACCTCTTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CAA 90 bp ACTACGTGCCTCCAGGGCTTGCCACGGACAACTATGTTTCAAATGGTCTTTTTCTGCTCCTCCTTCCTATaGTCCTGTTTGCACTTCTTT +
Preference number: 5 (lower is better)
Translates to: TTCLQGLPRTTMFQMVFFCSSFL*SCLHFF
Trigger: AAAGAAGTGCAAACAGGACAATAGGAAGGAGGAGCA...GAAAAAGACCATTTGAAACATAGTTGTCCGTGGCAAGCCCTGGAGGCACGTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp CATAACTCTCCCTGGTGCCATCTGCTCCAACATTTGACAAGAGCACTTAACGAGCCTTTAAGGAAGCATTaGAAGATCCTCTTGCTGCCT +
Preference number: 5 (lower is better)
Translates to: HNSPWCHLLQHLTRALNEPLRKH*KILLLP
Trigger: AGGCAGCAAGAGGATCTTCAAATGCTTCCTTAAAGG...CTCGTTAAGTGCTCTTGTCAAATGTTGGAGCAGATGGCACCAGGGAGAGTTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp CGTGCCTCCAGGGCTTGCCACGGACAACTATGTTTCAAATGGTCTTTTTCTTTATCATACCGTTCTCTTTaGGTGACCTTGGTGGACTCT +
Preference number: 5 (lower is better)
Translates to: RASRACHGQLCFKWSFSLSYRSL*VTLVDS
Trigger: AGAGTCCACCAAGGTCACCAAAAGAGAACGGTATGA...TAAAGAAAAAGACCATTTGAAACATAGTTGTCCGTGGCAAGCCCTGGAGGCACG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS CCA 90 bp TTTATTTCTATTCATTTTAGGTATATGCATGTTTTGCCTGATATATaGCTGTGTGCCTGGTGCCCACAGAGGCCAGAAGAGGGCGTTGGG +
Preference number: 5 (lower is better)
Translates to: FISIHFRYMHVLPDI*LCAWCPQRPEEGVG
Trigger: CCCAACGCCCTCTTCTGGCCTCTGTGGGCACCAGGCACACAGCCATATATCAGGCAAAACATGCATATACCTAAAATGAATAGAAATAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156570.8
CDS-3UTR CAA 90 bp ATCTTCAACAGTAGCATCCTTTTCAACTTCTCTTATGAGGCTGTCTTCACTGGGTCCAGACAACGTGGCTaGGTTAATGCCCTTGTAGAG +
Preference number: 5 (lower is better)
Translates to: IFNSSILFNFSYEAVFTGSRQRG*VNALVE
Trigger: CTCTACAAGGGCATTAACCAAGCCACGTTGTCTGGA...CCCAGTGAAGACAGCCTCATAAGAGAAGTTGAAAAGGATGCTACTGTTGAAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CAA 90 bp AGCCACTGCCTTCTTTGTGATTCAAACCAAGGTCTCACCATCACTCCAGACATGTCCACAGCACTGCCATaGATTTCTATGTCAATCACT +
Preference number: 5 (lower is better)
Translates to: SHCLLCDSNQGLTITPDMSTALP*ISMSIT
Trigger: AGTGATTGACATAGAAATCAATGGCAGTGCTGTGGA...CATGTCTGGAGTGATGGTGAGACCTTGGTTTGAATCACAAAGAAGGCAGTGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp GCAACAAGCCATCCAGGGGTTTGTGTGCAAACACACTTAAGGGCATCTCTCTTTGATTTCTTTGGCATCTaGTCTTTAACCCAGGACTCA +
Preference number: 5 (lower is better)
Translates to: ATSHPGVCVQTHLRASLFDFFGI*SLTQDS
Trigger: TGAGTCCTGGGTTAAAGACAAGATGCCAAAGAAATC...AAAGAGAGATGCCCTTAAGTGTGTTTGCACACAAACCCCTGGATGGCTTGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp CATGAACATAGCCAAGTTTCCCTACTACCTAACACAAGTAACTCACGGAGCAGAGTCTGGAACTCCGACTaGTGTGTAAGCATAGACATC +
Preference number: 5 (lower is better)
Translates to: HEHSQVSLLPNTSNSRSRVWNSD*CVSIDI
Trigger: GATGTCTATGCTTACACACAAGTCGGAGTTCCAGAC...TCTGCTCCGTGAGTTACTTGTGTTAGGTAGTAGGGAAACTTGGCTATGTTCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS TCA 90 bp TTACTGAGAAGTGGGAACACGTGTTCCACAAGCTCACTCAGCCTGTaGTACGATGATTTGTTCCCTTTGGTCCTCTCTTGGATTAATTCA +
Preference number: 5 (lower is better)
Translates to: LLRSGNTCSTSSLSL*YDDLFPLVLSWINS
Trigger: TGAATTAATCCAAGAGAGGACCAAAGGGAACAAATCATCGTATCACAGGCTGAGTGAGCTTGTGGAACACGTGTTCCCACTTCTCAGTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS GCA 90 bp TATCCGGATCACGAGGTTTGGGTTGTCGATAAGGCCAGGGTTTTCTaGAAACTCATGGTAAGTGATGATATGCTCCATGAACTTCTCTTT +
Preference number: 5 (lower is better)
Translates to: YPDHEVWVVDKARVF*KLMVSDDMLHELLF
Trigger: AAAGAGAAGTTCATGGAGCATATCATCACTTACCATGAGTTTGCAGAAAACCCTGGCCTTATCGACAACCCAAACCTCGTGATCCGGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp AACTGGCGAGAACGTCACATGAACATAGCCAAGTTTCCCTACTACCTAACACAACCTTTAAGGAAGCATTaGAAGATCCTCTTGCTGCCT +
Preference number: 5 (lower is better)
Translates to: NWRERHMNIAKFPYYLTQPLRKH*KILLLP
Trigger: AGGCAGCAAGAGGATCTTCAAATGCTTCCTTAAAGG...TTGTGTTAGGTAGTAGGGAAACTTGGCTATGTTCATGTGACGTTCTCGCCAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp TGGAGCTTCAGTTTTGCTATCTGGTCCGAGGAGAGTCGGAGAGACTTCTTATATGATTTCTTTGGCATCTaGTCTTTAACCCAGGACTCA +
Preference number: 5 (lower is better)
Translates to: WSFSFAIWSEESRRDFLYDFFGI*SLTQDS
Trigger: TGAGTCCTGGGTTAAAGACAAGATGCCAAAGAAATC...ATATAAGAAGTCTCTCCGACTCTCCTCGGACCAGATAGCAAAACTGAAGCTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
CDS-3UTR CAA 90 bp GACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTAAGTCAGGTGATGGGGTCAACTTaGATGCTTTCTTCCAACTCC +
Preference number: 5 (lower is better)
Translates to: DFQKSCSEIICPKGHLSQVMGST*MLSSNS
Trigger: GGAGTTGGAAGAAAGCATCAAAGTTGACCCCATCAC...CTGACTTAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp AGCCCAGACTTTCAAAAATCCTGTTCTGAAATAATCTGCCCCAAGGGCCACTTACATCAGACTTGGTTATaGTTCCGTCGATGTCAGAGA +
Preference number: 5 (lower is better)
Translates to: SPDFQKSCSEIICPKGHLHQTWL*FRRCQR
Trigger: TCTCTGACATCGACGGAACAATAACCAAGTCTGATG...TAAGTGGCCCTTGGGGCAGATTATTTCAGAACAGGATTTTTGAAAGTCTGGGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp TCTTCACTGGGAATTACCCTGAAATGTGTGTTCTCTGATGGTGTAATCGTAGCTCACATAATTCATGGTTaGAGACAGAATCCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: SSLGITLKCVFSDGVIVAHIIHG*RQNPRR
Trigger: CCTCCTGGGATTCTGTCTCAAACCATGAATTATGTG...AGCTACGATTACACCATCAGAGAACACACATTTCAGGGTAATTCCCAGTGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CAA 90 bp TTACACAGGGCTCTAGGTTTGGGTTTCACTATGGTACAGGTAGTATCTTCAACATGCTCCTCCTTCCTATaGTCCTGTTTGCACTTCTTT +
Preference number: 5 (lower is better)
Translates to: LHRALGLGFTMVQVVSSTCSSFL*SCLHFF
Trigger: AAAGAAGTGCAAACAGGACAATAGGAAGGAGGAGCA...TGTTGAAGATACTACCTGTACCATAGTGAAACCCAAACCTAGAGCCCTGTGTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000135589.8
CDS-3UTR CAA 90 bp AACTCTTTACTTTTGTGTAGCAATGTGCTGGTCTATTCTTTTTCAGTTTCTGGTTCAATCACTTTCTCCTaGGACCTCAGGACACCCAGC +
Preference number: 5 (lower is better)
Translates to: NSLLLCSNVLVYSFSVSGSITFS*DLRTPS
Trigger: GCTGGGTGTCCTGAGGTCCAAGGAGAAAGTGATTGA...ACCAGAAACTGAAAAAGAATAGACCAGCACATTGCTACACAAAAGTAAAGAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS-3UTR CAA 90 bp AACTCTTTACTTTTGTGTAGCAATGTGCTGGTCTATTCTTTTTCAGTTTCTGGTCATTTGAAGATCCTCTaGCTGCCTGGGCTCTCTTCT +
Preference number: 5 (lower is better)
Translates to: NSLLLCSNVLVYSFSVSGHLKIL*LPGLSS
Trigger: AGAAGAGAGCCCAGGCAGCAAGAGGATCTTCAAATG...ACCAGAAACTGAAAAAGAATAGACCAGCACATTGCTACACAAAAGTAAAGAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS CAA 72 bp TGTGTGCCTGGTGCCCACAGAGGCCAGAAGAGGGCGTaGGGTCCCCGGGCACTAGAATCAGTCATGAGCTGC +
Preference number: 6 (lower is better)
Translates to: CVPGAHRGQKRA*GPRALESVMSC
Trigger: GCAGCTCATGACTGATTCTAGTGCCCGGGGACCCAACGCCCTCTTCTGGCCTCTGTGGGCACCAGGCACACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156570.8
CDS GCA 72 bp CAGGCAAGTCCATGGCAGAGTCTGAGAGGCATTCAGTaGCACTGTCCGCAGCTGCACTCCCCACAGACTGTG +
Preference number: 6 (lower is better)
Translates to: QASPWQSLRGIQ*HCPQLHSPQTV
Trigger: CACAGTCTGTGGGGAGTGCAGCTGCGGACAGTGGCACTGAATGCCTCTCAGACTCTGCCATGGACTTGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS GCA 72 bp GCGTTGGGTCCCCGGGCACTAGAATCAGTCATGAGCTaGCATGTGGGTCCTCTGGAGACACAGCCATGGTCA +
Preference number: 6 (lower is better)
Translates to: ALGPRALESVMS*HVGPLETQPWS
Trigger: TGACCATGGCTGTGTCTCCAGAGGACCCACATGGCAGCTCATGACTGATTCTAGTGCCCGGGGACCCAACGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000156570.8
CDS TCA 72 bp GGAGAGGGTTACATCAGGCAAGTCCATGGCAGAGTCTaGGAGGCATTCAGTGCCACTGTCCGCAGCTGCACT +
Preference number: 6 (lower is better)
Translates to: GEGYIRQVHGRV*EAFSATVRSCT
Trigger: AGTGCAGCTGCGGACAGTGGCACTGAATGCCTCTCAGACTCTGCCATGGACTTGCCTGATGTAACCCTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS CCA 72 bp CTCCACAGAGGGAGAGGGTTACATCAGGCAAGTCCATaGCAGAGTCTGAGAGGCATTCAGTGCCACTGTCCG +
Preference number: 6 (lower is better)
Translates to: LHRGRGLHQASP*QSLRGIQCHCP
Trigger: CGGACAGTGGCACTGAATGCCTCTCAGACTCTGCCATGGACTTGCCTGATGTAACCCTCTCCCTCTGTGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS CAA 90 bp CAGGTCTGGCACTGGTTGGCTCCTCAGCATTGGAAGGCAGGTCATTaGCTGGAGGGACCTCAGATTTTCCCTCCTTGGTCTCTGGCAACT +
Preference number: 6 (lower is better)
Translates to: QVWHWLAPQHWKAGH*LEGPQIFPPWSLAT
Trigger: AGTTGCCAGAGACCAAGGAGGGAAAATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAACCAGTGCCAGACCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS CAA 72 bp TTCTCTGCAGGTCTGGCACTGGTTGGCTCCTCAGCATaGGAAGGCAGGTCATTTGCTGGAGGGACCTCAGAT +
Preference number: 6 (lower is better)
Translates to: FSAGLALVGSSA*EGRSFAGGTSD
Trigger: ATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAACCAGTGCCAGACCTGCAGAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS CAA 90 bp GAAGTGTCATTCTCTGCAGGTCTGGCACTGGTTGGCTCCTCAGCATaGGAAGGCAGGTCATTTGCTGGAGGGACCTCAGATTTTCCCTCC +
Preference number: 6 (lower is better)
Translates to: EVSFSAGLALVGSSA*EGRSFAGGTSDFPS
Trigger: GGAGGGAAAATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAACCAGTGCCAGACCTGCAGAGAATGACACTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS CAA 90 bp AACACCTGGCACTGGTTGGCTCCTCAGCATTGGAAGGCAGGTCATTaGCTGGAGGGACCTCAGATTTTCCCTCCTTGGTCTCTGGCAACT +
Preference number: 6 (lower is better)
Translates to: NTWHWLAPQHWKAGH*LEGPQIFPPWSLAT
Trigger: AGTTGCCAGAGACCAAGGAGGGAAAATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAACCAGTGCCAGGTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000154507.8
CDS GCA 72 bp ACTGGTTGGCTCCTCAGCATTGGAAGGCAGGTCATTTaGTGGAGGGACCTCAGATTTTCCCTCCTTGGTCTC +
Preference number: 6 (lower is better)
Translates to: TGWLLSIGRQVI*WRDLRFSLLGL
Trigger: GAGACCAAGGAGGGAAAATCTGAGGTCCCTCCAGCAAATGACCTGCCTTCCAATGCTGAGGAGCCAACCAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
ENSMUST00000154507.8
CDS TCA 72 bp ACCCAGGACTCAACGGTGGCCTTAGGCAAACTCTTCTaGAATACCTGTAAGCTAAGGATCATGGGAGCAGCC +
Preference number: 6 (lower is better)
Translates to: TQDSTVALGKLF*NTCKLRIMGAA
Trigger: GGCTGCTCCCATGATCCTTAGCTTACAGGTATTTCAGAAGAGTTTGCCTAAGGCCACCGTTGAGTCCTGGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
ENSMUST00000154507.8
CDS GCA 72 bp ACCCACATCACCTACATCTTCTGCAACAGGGGAAGCTaGCTGCTCCTCCTTCCTATTGTCCTGTTTGCACTT +
Preference number: 6 (lower is better)
Translates to: THITYIFCNRGS*LLLLPIVLFAL
Trigger: AAGTGCAAACAGGACAATAGGAAGGAGGAGCAGGCAGCTTCCCCTGTTGCAGAAGATGTAGGTGATGTGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
ENSMUST00000135589.8
ENSMUST00000156570.8
CDS CAA 72 bp CGCCAAAACCACCATCGACCAGATTTCTTTGGCATCTaGTCTTTAACCCAGGACTCAACGGTGGCCTTAGGC +
Preference number: 6 (lower is better)
Translates to: RQNHHRPDFFGI*SLTQDSTVALG
Trigger: GCCTAAGGCCACCGTTGAGTCCTGGGTTAAAGACAAGATGCCAAAGAAATCTGGTCGATGGTGGTTTTGGCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
ENSMUST00000154507.8
CDS TCA 72 bp AGTGGGAACACGTGTTCCACAAGCTCACTCAGCCTGTaGTACGATGATTTGTTCCCTTTGGTCCTCTCTTGG +
Preference number: 6 (lower is better)
Translates to: SGNTCSTSSLSL*YDDLFPLVLSW
Trigger: CCAAGAGAGGACCAAAGGGAACAAATCATCGTATCACAGGCTGAGTGAGCTTGTGGAACACGTGTTCCCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS TCA 72 bp ACTCTGGGCATGGAAAGGCAGAATTCTGCTCCTTACTaGGAAGTGGGAACACGTGTTCCACAAGCTCACTCA +
Preference number: 6 (lower is better)
Translates to: TLGMERQNSAPY*EVGTRVPQAHS
Trigger: TGAGTGAGCTTGTGGAACACGTGTTCCCACTTCTCAGTAAGGAGCAGAATTCTGCCTTTCCATGCCCAGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS GCA 72 bp AATTCATGGTTTGAGACAGAATCCCAGGAGGGGCCTTaGCATGGTAAACACTTGCAGGTTTACTCAACGAGC +
Preference number: 6 (lower is better)
Translates to: NSWFETESQEGP*HGKHLQVYSTS
Trigger: GCTCGTTGAGTAAACCTGCAAGTGTTTACCATGGCAAGGCCCCTCCTGGGATTCTGTCTCAAACCATGAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000135589.8
CDS CAA 90 bp ACCCTTTGGATTCACAGTAAATATCCTACAGTCTGGAACTCCGACTaGTGTGTAAGCATAGACATCGTTGGGACGGTTTCCAAAGGCAGC +
Preference number: 6 (lower is better)
Translates to: TLWIHSKYPTVWNSD*CVSIDIVGTVSKGS
Trigger: GCTGCCTTTGGAAACCGTCCCAACGATGTCTATGCTTACACACAAGTCGGAGTTCCAGACTGTAGGATATTTACTGTGAATCCAAAGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS CCA 72 bp GTTGTAGTAACGGTTATATATCCGGATCACGAGGTTTaGGTTGTCGATAAGGCCAGGGTTTTCTGCAAACTC +
Preference number: 6 (lower is better)
Translates to: VVVTVIYPDHEV*VVDKARVFCKL
Trigger: GAGTTTGCAGAAAACCCTGGCCTTATCGACAACCCAAACCTCGTGATCCGGATATATAACCGTTACTACAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
CDS CCA 72 bp ATTCATTTTAGGTATATGCATGTTTTGCCTGATATATaGCTGTGTGCCTGGTGCCCACAGAGGCCAGAAGAG +
Preference number: 6 (lower is better)
Translates to: IHFRYMHVLPDI*LCAWCPQRPEE
Trigger: CTCTTCTGGCCTCTGTGGGCACCAGGCACACAGCCATATATCAGGCAAAACATGCATATACCTAAAATGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000156570.8
CDS CAA 72 bp AGGTCATTTGCTGGAGGGACCTCAGATTTTCCCTCCTaGGTCTCTGGCAACTGTTTGATCATACTTTCTTTT +
Preference number: 6 (lower is better)
Translates to: RSFAGGTSDFPS*VSGNCLIILSF
Trigger: AAAAGAAAGTATGATCAAACAGTTGCCAGAGACCAAGGAGGGAAAATCTGAGGTCCCTCCAGCAAATGACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8
ENSMUST00000154507.8
CDS CCA 72 bp TTCACCCTTTGGATTCACAGTAAATATCCTACAGTCTaGAACTCCGACTTGTGTGTAAGCATAGACATCGTT +
Preference number: 6 (lower is better)
Translates to: FTLWIHSKYPTV*NSDLCVSIDIV
Trigger: AACGATGTCTATGCTTACACACAAGTCGGAGTTCCAGACTGTAGGATATTTACTGTGAATCCAAAGGGTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000126681.8
ENSMUST00000129635.8