Pregenerated sensors for LPCAT3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004270Ensembl transcript IDs: ENSMUST00000004381.14, ENSMUST00000128721.7
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGTAGGAGAAGCCAGCAACTTCCAGCAATGAAGGGACACCCCGTATaGCATATTTCTGTTGCTCAGAGGTCAAGGAATTCCCGTCTTTGC | + |
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Preference number: 1 (lower is better) Translates to: SRRSQQLPAMKGHPV*HISVAQRSRNSRLC Trigger: GCAAAGACGGGAATTCCTTGACCTCTGAGCAACAGAAATATGCCATACGGGGTGTCCCTTCATTGCTGGAAGTTGCTGGCTTCTCCTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| 3UTR TCA 90 bp | CAAGAAGGCTCCATAGAAGTAGGAGAAGCCAGCAACTTCCAGCAATaGAGGGACACCCCGTATGGCATATTTCTGTTGCTCAGAGGTCAA | + |
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Preference number: 1 (lower is better) Translates to: QEGSIEVGEASNFQQ*RDTPYGIFLLLRGQ Trigger: TTGACCTCTGAGCAACAGAAATATGCCATACGGGGTGTCCCTTCATTGCTGGAAGTTGCTGGCTTCTCCTACTTCTATGGAGCCTTCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| 3UTR TCA 90 bp | TATGTCAGTCAGCTGTCCCCGCACCAGCTTCATGTAGTGGTTCATTaGAAATTGGGGCCCTACCAAGAAGGCTCCATAGAAGTAGGAGAA | + |
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Preference number: 1 (lower is better) Translates to: YVSQLSPHQLHVVVH*KLGPYQEGSIEVGE Trigger: TTCTCCTACTTCTATGGAGCCTTCTTGGTAGGGCCCCAATTTTCAATGAACCACTACATGAAGCTGGTGCGGGGACAGCTGACTGACATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| 3UTR GCA 90 bp | GTATGGCATATTTCTGTTGCTCAGAGGTCAAGGAATTCCCGTCTTTaGCTCCATCGTAGTAGTCAATACACAGCCCAATTAGCTTCAGTG | + |
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Preference number: 1 (lower is better) Translates to: VWHISVAQRSRNSRL*LHRSSQYTAQLASV Trigger: CACTGAAGCTAATTGGGCTGTGTATTGACTACTACGATGGAGGCAAAGACGGGAATTCCTTGACCTCTGAGCAACAGAAATATGCCATAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| 3UTR-3UTR TCA 90 bp | TGGCGGTATCGGCACATATACAATCGTAGTAGATTGGCAGAAGAGAAACAACAGCAGCTGGGAGTGCTGTaGCTTCCAGCTCCTGGCGTC | + |
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Preference number: 2 (lower is better) Translates to: WRYRHIYNRSRLAEEKQQQLGVL*LPAPGV Trigger: GACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTG...CTGTTGTTTCTCTTCTGCCAATCTACTACGATTGTATATGTGCCGATACCGCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| 3UTR-3UTR GCA 90 bp | TTCCAGATTTTGACAGTAGGCGTTCCTGATTTCCTAGATTTCTGTGGCTCTCAAGGAGTCCAAAGGGGGTaGAGCCCCTCTGCTCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: FQILTVGVPDFLDFCGSQGVQRG*SPSAPP Trigger: GGGAGGAGCAGAGGGGCTGCACCCCCTTTGGACTCC...TTGAGAGCCACAGAAATCTAGGAAATCAGGAACGCCTACTGTCAAAATCTGGAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| 3UTR-3UTR GCA 90 bp | AGTGATTTTATCTGGTATAGTTCCAAGATAGAAAAAGTGGAGCAGGCAGGGCCTAGCTCCTGGCGTCTCTaGTGGGGTGAGGAGTGCTGT | + |
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Preference number: 2 (lower is better) Translates to: SDFIWYSSKIEKVEQAGPSSWRL*WGEECC Trigger: ACAGCACTCCTCACCCCAGCAGAGACGCCAGGAGCT...AGGCCCTGCCTGCTCCACTTTTTCTATCTTGGAACTATACCAGATAAAATCACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| 3UTR-3UTR GCA 90 bp | TGGCGGTATCGGCACATATACAATCGTAGTAGATTGGCAGAAGAGAAACAACAGAGGCACAGCTGGGAGTaGTGTGACTTCCAGCTCCTG | + |
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Preference number: 2 (lower is better) Translates to: WRYRHIYNRSRLAEEKQQRHSWE*CDFQLL Trigger: CAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCCT...CTGTTGTTTCTCTTCTGCCAATCTACTACGATTGTATATGTGCCGATACCGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| 3UTR-3UTR GCA 90 bp | TGGCGGTATCGGCACATATACAATCGTAGTAGATTGGCAGAAGAGAAACAACAGTGCTGGGGTGAGGAGTaGTGTGAGAAGGGAGACAAG | + |
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Preference number: 2 (lower is better) Translates to: WRYRHIYNRSRLAEEKQQCWGEE*CEKGDK Trigger: CTTGTCTCCCTTCTCACAGCACTCCTCACCCCAGCA...CTGTTGTTTCTCTTCTGCCAATCTACTACGATTGTATATGTGCCGATACCGCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| 3UTR-3UTR CCA 90 bp | AGTGATTTTATCTGGTATAGTTCCAAGATAGAAAAAGTGGAGCAGGCAGGGCCTTCGCAGAGGCACAGCTaGGAGTGCTGTGACTTCCAG | + |
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Preference number: 2 (lower is better) Translates to: SDFIWYSSKIEKVEQAGPSQRHS*ECCDFQ Trigger: CTGGAAGTCACAGCACTCCCAGCTGTGCCTCTGCGA...AGGCCCTGCCTGCTCCACTTTTTCTATCTTGGAACTATACCAGATAAAATCACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| 3UTR-3UTR CCA 90 bp | CTTGAGAGCAGGTATGGTGCTGTTTGGCATCTTCCCTGGTATGTCAGTCAGCTGTGGTTCATTGAAAATTaGGGCCCTACCAAGAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: LESRYGAVWHLPWYVSQLWFIEN*GPTKKA Trigger: AGCCTTCTTGGTAGGGCCCCAATTTTCAATGAACCA...CAGCTGACTGACATACCAGGGAAGATGCCAAACAGCACCATACCTGCTCTCAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| 3UTR-3UTR CCA 90 bp | AGTGGTTCATTGAAAATTGGGGCCCTACCAAGAAGGCTCCATAGAAGTAGGAGATGTCAAGACACAATGTaGCATTGTCCACTTGATATC | + |
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Preference number: 2 (lower is better) Translates to: SGSLKIGALPRRLHRSRRCQDTM*HCPLDI Trigger: GATATCAAGTGGACAATGCCACATTGTGTCTTGACA...TCTCCTACTTCTATGGAGCCTTCTTGGTAGGGCCCCAATTTTCAATGAACCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| 3UTR TCA 72 bp | CCTTTGGCTGTCGCAGAGGCACAGCTGGGAGTGCTGTaGCTTCCAGCTCCTGGCGTCTCTGCTGGGGTGAGG | + |
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Preference number: 3 (lower is better) Translates to: PLAVAEAQLGVL*LPAPGVSAGVR Trigger: CCTCACCCCAGCAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCCTCTGCGACAGCCAAAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| 3UTR GCA 72 bp | CTTCCCCTTTGGCTGTCGCAGAGGCACAGCTGGGAGTaGTGTGACTTCCAGCTCCTGGCGTCTCTGCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: LPLWLSQRHSWE*CDFQLLASLLG Trigger: CCCCAGCAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCCTCTGCGACAGCCAAAGGGGAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| 3UTR GCA 72 bp | GCTGGGAGTGCTGTGACTTCCAGCTCCTGGCGTCTCTaGTGGGGTGAGGAGTGCTGTGAGAAGGGAGACAAG | + |
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Preference number: 3 (lower is better) Translates to: AGSAVTSSSWRL*WGEECCEKGDK Trigger: CTTGTCTCCCTTCTCACAGCACTCCTCACCCCAGCAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| 3UTR CCA 72 bp | CAAGAGCTTCCCCTTTGGCTGTCGCAGAGGCACAGCTaGGAGTGCTGTGACTTCCAGCTCCTGGCGTCTCTG | + |
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Preference number: 3 (lower is better) Translates to: QELPLWLSQRHS*ECCDFQLLASL Trigger: CAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCCTCTGCGACAGCCAAAGGGGAAGCTCTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| 3UTR GCA 72 bp | GTGAGGAGTGCTGTGAGAAGGGAGACAAGTAGTTTCTaGACCAGTCCAGCTCTCGGCCACCAGGGAAAGACA | + |
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Preference number: 3 (lower is better) Translates to: VRSAVRRETSSF*TSPALGHQGKT Trigger: TGTCTTTCCCTGGTGGCCGAGAGCTGGACTGGTGCAGAAACTACTTGTCTCCCTTCTCACAGCACTCCTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| 3UTR CCA 72 bp | CTTGAGAGCAGGTATGGTGCTGTTTGGCATCTTCCCTaGTATGTCAGTCAGCTGTCCCCGCACCAGCTTCAT | + |
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Preference number: 3 (lower is better) Translates to: LESRYGAVWHLP*YVSQLSPHQLH Trigger: ATGAAGCTGGTGCGGGGACAGCTGACTGACATACCAGGGAAGATGCCAAACAGCACCATACCTGCTCTCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| 3UTR GCA 72 bp | AGCAATGAAGGGACACCCCGTATGGCATATTTCTGTTaGTCAGAGGTCAAGGAATTCCCGTCTTTGCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: SNEGTPRMAYFC*SEVKEFPSLPP Trigger: TGGAGGCAAAGACGGGAATTCCTTGACCTCTGAGCAACAGAAATATGCCATACGGGGTGTCCCTTCATTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| 3UTR CCA 72 bp | AGCCAGCAACTTCCAGCAATGAAGGGACACCCCGTATaGCATATTTCTGTTGCTCAGAGGTCAAGGAATTCC | + |
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Preference number: 3 (lower is better) Translates to: SQQLPAMKGHPV*HISVAQRSRNS Trigger: GGAATTCCTTGACCTCTGAGCAACAGAAATATGCCATACGGGGTGTCCCTTCATTGCTGGAAGTTGCTGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| 3UTR-3UTR CAA 90 bp | AGTGATTTTATCTGGTATAGTTCCAAGATAGAAAAAGTGGAGCAGGCAGGGCCTTACAATCGTAGTAGATaGGCAGAAGAGAAACAACAG | + |
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Preference number: 3 (lower is better) Translates to: SDFIWYSSKIEKVEQAGPYNRSR*AEEKQQ Trigger: CTGTTGTTTCTCTTCTGCCAATCTACTACGATTGTA...AGGCCCTGCCTGCTCCACTTTTTCTATCTTGGAACTATACCAGATAAAATCACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR GCA 90 bp | GGCACAGCTGGGAGTGCTGTGACTTCCAGCTCCTGGCGTCTCTGCTGGGGTGAGCACAGCCCCCGCATCTaGTCCAGCGTCTCTCCCATG | + |
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Preference number: 4 (lower is better) Translates to: GTAGSAVTSSSWRLCWGEHSPRI*SSVSPM Trigger: CATGGGAGAGACGCTGGAGCAGATGCGGGGGCTGTG...CTCACCCCAGCAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR TCA 90 bp | GGCACAGCTGGGAGTGCTGTGACTTCCAGCTCCTGGCGTCTCTGCTGGGGTGAGGGAGATAGTCGTCTGTaGTGTGGGGGCTCAGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: GTAGSAVTSSSWRLCWGEGDSRL*CGGSAG Trigger: CCCTGCTGAGCCCCCACATCACAGACGACTATCTCC...CTCACCCCAGCAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR GCA 90 bp | GGCACAGCTGGGAGTGCTGTGACTTCCAGCTCCTGGCGTCTCTGCTGGGGTGAGCCTGAGTGTAGGCCATaGCAGAGGGCCAAGAACAGC | + |
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Preference number: 4 (lower is better) Translates to: GTAGSAVTSSSWRLCWGEPECRP*QRAKNS Trigger: GCTGTTCTTGGCCCTCTGGCATGGCCTACACTCAGG...CTCACCCCAGCAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR TCA 90 bp | GGCACAGCTGGGAGTGCTGTGACTTCCAGCTCCTGGCGTCTCTGCTGGGGTGAGAGCAACTTCCAGCAATaGAGGGACACCCCGTATGGC | + |
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Preference number: 4 (lower is better) Translates to: GTAGSAVTSSSWRLCWGESNFQQ*RDTPYG Trigger: GCCATACGGGGTGTCCCTTCATTGCTGGAAGTTGCT...CTCACCCCAGCAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR TCA 90 bp | GGCACAGCTGGGAGTGCTGTGACTTCCAGCTCCTGGCGTCTCTGCTGGGGTGAGGTGGCATTGTCCACTTaGTATCGTAGTCACCGGTGG | + |
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Preference number: 4 (lower is better) Translates to: GTAGSAVTSSSWRLCWGEVALST*YRSHRW Trigger: CCACCGGTGACTACGATATCAAGTGGACAATGCCAC...CTCACCCCAGCAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CCA 90 bp | GGCACAGCTGGGAGTGCTGTGACTTCCAGCTCCTGGCGTCTCTGCTGGGGTGAGCCCATGAACAGCCAGTaGATGGTCTGTTGCACCAAG | + |
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Preference number: 4 (lower is better) Translates to: GTAGSAVTSSSWRLCWGEPMNSQ*MVCCTK Trigger: CTTGGTGCAACAGACCATCCACTGGCTGTTCATGGG...CTCACCCCAGCAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR GCA 90 bp | GAAGGGACACCCCGTATGGCATATTTCTGTTGCTCAGAGGTCAAGGAATTCCCGCACAGCCCCCGCATCTaGTCCAGCGTCTCTCCCATG | + |
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Preference number: 4 (lower is better) Translates to: EGTPRMAYFCCSEVKEFPHSPRI*SSVSPM Trigger: CATGGGAGAGACGCTGGAGCAGATGCGGGGGCTGTG...CGGGAATTCCTTGACCTCTGAGCAACAGAAATATGCCATACGGGGTGTCCCTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| CDS-3UTR TCA 90 bp | AAAATTGGGGCCCTACCAAGAAGGCTCCATAGAAGTAGGAGAAGCCAGCAACTTGGAAGATGGAGAAGATaGGCCGCAGCGCCTGTTCCG | + |
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Preference number: 4 (lower is better) Translates to: KIGALPRRLHRSRRSQQLGRWRR*AAAPVP Trigger: CGGAACAGGCGCTGCGGCTCATCTTCTCCATCTTCC...AAGTTGCTGGCTTCTCCTACTTCTATGGAGCCTTCTTGGTAGGGCCCCAATTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| CDS-3UTR TCA 90 bp | GGCACAGCTGGGAGTGCTGTGACTTCCAGCTCCTGGCGTCTCTGCTGGGGTGAGGGATATAAGGCAATATaGATAGTAGGCTCAAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: GTAGSAVTSSSWRLCWGEGYKAI*IVGSRR Trigger: TCTTCTTGAGCCTACTATTCATATTGCCTTATATCC...CTCACCCCAGCAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR TCA 90 bp | TGGCGGTATCGGCACATATACAATCGTAGTAGATTGGCAGAAGAGAAACAACAGGGAAGATGGAGAAGATaGGCCGCAGCGCCTGTTCCG | + |
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Preference number: 4 (lower is better) Translates to: WRYRHIYNRSRLAEEKQQGRWRR*AAAPVP Trigger: CGGAACAGGCGCTGCGGCTCATCTTCTCCATCTTCC...CTGTTGTTTCTCTTCTGCCAATCTACTACGATTGTATATGTGCCGATACCGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR TCA 90 bp | CCAGCAACTTCCAGCAATGAAGGGACACCCCGTATGGCATATTTCTGTTGCTCATGTGGAAGAGATGGATaGGGTAGCTGTCCTTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: PATSSNEGTPRMAYFCCSCGRDG*GSCPCR Trigger: TCTACAAGGACAGCTACCTCATCCATCTCTTCCACA...TGAGCAACAGAAATATGCCATACGGGGTGTCCCTTCATTGCTGGAAGTTGCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| CDS-3UTR TCA 90 bp | AGTGATTTTATCTGGTATAGTTCCAAGATAGAAAAAGTGGAGCAGGCAGGGCCTCGCAGGATGAGGAACTaGAGCACGACACATAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: SDFIWYSSKIEKVEQAGPRRMRN*STTHSK Trigger: CTTGCTATGTGTCGTGCTTCAGTTCCTCATCCTGCG...AGGCCCTGCCTGCTCCACTTTTTCTATCTTGGAACTATACCAGATAAAATCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CCA 90 bp | TGGCGGTATCGGCACATATACAATCGTAGTAGATTGGCAGAAGAGAAACAACAGGTTTGGCATCTTCCCTaGTATGTCAGTCAGCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: WRYRHIYNRSRLAEEKQQVWHLP*YVSQLS Trigger: GGACAGCTGACTGACATACCAGGGAAGATGCCAAAC...CTGTTGTTTCTCTTCTGCCAATCTACTACGATTGTATATGTGCCGATACCGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR TCA 90 bp | TGGCGGTATCGGCACATATACAATCGTAGTAGATTGGCAGAAGAGAAACAACAGTGTGGAAGAGATGGATaGGGTAGCTGTCCTTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: WRYRHIYNRSRLAEEKQQCGRDG*GSCPCR Trigger: TCTACAAGGACAGCTACCTCATCCATCTCTTCCACA...CTGTTGTTTCTCTTCTGCCAATCTACTACGATTGTATATGTGCCGATACCGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR GCA 90 bp | TTCCAGATTTTGACAGTAGGCGTTCCTGATTTCCTAGATTTCTGTGGCTCTCAAAGATCAGCATGTACATaGAGCGGAACCAGAAAGGGC | + |
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Preference number: 4 (lower is better) Translates to: FQILTVGVPDFLDFCGSQRSACT*SGTRKG Trigger: GCCCTTTCTGGTTCCGCTGCATGTACATGCTGATCT...TTGAGAGCCACAGAAATCTAGGAAATCAGGAACGCCTACTGTCAAAATCTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR TCA 90 bp | AGTGATTTTATCTGGTATAGTTCCAAGATAGAAAAAGTGGAGCAGGCAGGGCCTGTTGAAATAAGCAATTaGGAGGCCCGTGAAGGTGTG | + |
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Preference number: 4 (lower is better) Translates to: SDFIWYSSKIEKVEQAGPVEISN*EAREGV Trigger: CACACCTTCACGGGCCTCTCAATTGCTTATTTCAAC...AGGCCCTGCCTGCTCCACTTTTTCTATCTTGGAACTATACCAGATAAAATCACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CCA 90 bp | AGTGATTTTATCTGGTATAGTTCCAAGATAGAAAAAGTGGAGCAGGCAGGGCCTAAGGGACACCCCGTATaGCATATTTCTGTTGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: SDFIWYSSKIEKVEQAGPKGHPV*HISVAQ Trigger: CTGAGCAACAGAAATATGCCATACGGGGTGTCCCTT...AGGCCCTGCCTGCTCCACTTTTTCTATCTTGGAACTATACCAGATAAAATCACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR TCA 90 bp | TTCCAGATTTTGACAGTAGGCGTTCCTGATTTCCTAGATTTCTGTGGCTCTCAAACTGGTGGCCAAAGTTaGAATAAGCAATTGAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: FQILTVGVPDFLDFCGSQTGGQS*NKQLRG Trigger: GCCTCTCAATTGCTTATTTCAACTTTGGCCACCAGT...TTGAGAGCCACAGAAATCTAGGAAATCAGGAACGCCTACTGTCAAAATCTGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR TCA 90 bp | AGTGATTTTATCTGGTATAGTTCCAAGATAGAAAAAGTGGAGCAGGCAGGGCCTCATGTAGTGGTTCATTaGAAATTGGGGCCCTACCAA | + |
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Preference number: 4 (lower is better) Translates to: SDFIWYSSKIEKVEQAGPHVVVH*KLGPYQ Trigger: TTGGTAGGGCCCCAATTTTCAATGAACCACTACATG...AGGCCCTGCCTGCTCCACTTTTTCTATCTTGGAACTATACCAGATAAAATCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR GCA 90 bp | TGGCGGTATCGGCACATATACAATCGTAGTAGATTGGCAGAAGAGAAACAACAGTGTACAGCACAAATTTaGCCCAGATCAGCATGTACA | + |
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Preference number: 4 (lower is better) Translates to: WRYRHIYNRSRLAEEKQQCTAQI*PRSACT Trigger: TGTACATGCTGATCTGGGGCAAATTTGTGCTGTACA...CTGTTGTTTCTCTTCTGCCAATCTACTACGATTGTATATGTGCCGATACCGCCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CCA 90 bp | TTCCAGATTTTGACAGTAGGCGTTCCTGATTTCCTAGATTTCTGTGGCTCTCAATGGTTCATTGAAAATTaGGGCCCTACCAAGAAGGCT | + |
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Preference number: 4 (lower is better) Translates to: FQILTVGVPDFLDFCGSQWFIEN*GPTKKA Trigger: AGCCTTCTTGGTAGGGCCCCAATTTTCAATGAACCA...TTGAGAGCCACAGAAATCTAGGAAATCAGGAACGCCTACTGTCAAAATCTGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CCA 90 bp | TTCCAGATTTTGACAGTAGGCGTTCCTGATTTCCTAGATTTCTGTGGCTCTCAATGTCAAGACACAATGTaGCATTGTCCACTTGATATC | + |
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Preference number: 4 (lower is better) Translates to: FQILTVGVPDFLDFCGSQCQDTM*HCPLDI Trigger: GATATCAAGTGGACAATGCCACATTGTGTCTTGACA...TTGAGAGCCACAGAAATCTAGGAAATCAGGAACGCCTACTGTCAAAATCTGGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR GCA 90 bp | TTCCAGATTTTGACAGTAGGCGTTCCTGATTTCCTAGATTTCTGTGGCTCTCAATTTTCTTGGCACCATTaGTTTGTGGATATAAGGCAA | + |
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Preference number: 4 (lower is better) Translates to: FQILTVGVPDFLDFCGSQFSWHH*FVDIRQ Trigger: TTGCCTTATATCCACAAAGCAATGGTGCCAAGAAAA...TTGAGAGCCACAGAAATCTAGGAAATCAGGAACGCCTACTGTCAAAATCTGGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CAA 90 bp | GGCACAGCTGGGAGTGCTGTGACTTCCAGCTCCTGGCGTCTCTGCTGGGGTGAGTTGTACAGCACAAATTaGCCCCAGATCAGCATGTAC | + |
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Preference number: 5 (lower is better) Translates to: GTAGSAVTSSSWRLCWGELYSTN*PQISMY Trigger: GTACATGCTGATCTGGGGCAAATTTGTGCTGTACAA...CTCACCCCAGCAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CAA 90 bp | GGCACAGCTGGGAGTGCTGTGACTTCCAGCTCCTGGCGTCTCTGCTGGGGTGAGTTAACTTTTCTTTTCTaGGCACCATTGCTTTGTGGA | + |
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Preference number: 5 (lower is better) Translates to: GTAGSAVTSSSWRLCWGELTFLF*APLLCG Trigger: TCCACAAAGCAATGGTGCCAAGAAAAGAAAAGTTAA...CTCACCCCAGCAGAGACGCCAGGAGCTGGAAGTCACAGCACTCCCAGCTGTGCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CAA 90 bp | CTTGAGAGCAGGTATGGTGCTGTTTGGCATCTTCCCTGGTATGTCAGTCAGCTGAGAGACGTCGCCAACTaGTTAAGGCTCAGATCCTCG | + |
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Preference number: 5 (lower is better) Translates to: LESRYGAVWHLPWYVSQLRDVAN*LRLRSS Trigger: CGAGGATCTGAGCCTTAACAAGTTGGCGACGTCTCT...CAGCTGACTGACATACCAGGGAAGATGCCAAACAGCACCATACCTGCTCTCAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128721.7 |
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| CDS GCA 90 bp | AGGAATTCCATCTGGAAGCAAATCAGGTATCCTGAGTGTAGGCCATaGCAGAGGGCCAAGAACAGCAAGGAGAGACCTTGTGAGAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: RNSIWKQIRYPECRP*QRAKNSKERPCESS Trigger: AGAGCTCTCACAAGGTCTCTCCTTGCTGTTCTTGGCCCTCTGGCATGGCCTACACTCAGGATACCTGATTTGCTTCCAGATGGAATTCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CAA 90 bp | AGTGATTTTATCTGGTATAGTTCCAAGATAGAAAAAGTGGAGCAGGCAGGGCCTGAGGCGATGGTGCCATaGAAGCGAGGGGTGGTTTCA | + |
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Preference number: 5 (lower is better) Translates to: SDFIWYSSKIEKVEQAGPEAMVP*KRGVVS Trigger: TGAAACCACCCCTCGCTTCAATGGCACCATCGCCTC...AGGCCCTGCCTGCTCCACTTTTTCTATCTTGGAACTATACCAGATAAAATCACT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CAA 90 bp | TGGCGGTATCGGCACATATACAATCGTAGTAGATTGGCAGAAGAGAAACAACAGAGCCACACTTTCATGTaGGCACAGGCATCCCATCTC | + |
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Preference number: 5 (lower is better) Translates to: WRYRHIYNRSRLAEEKQQSHTFM*AQASHL Trigger: GAGATGGGATGCCTGTGCCAACATGAAAGTGTGGCT...CTGTTGTTTCTCTTCTGCCAATCTACTACGATTGTATATGTGCCGATACCGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS TCA 90 bp | GCCCAATTAGCTTCAGTGTCAAGACACAATGTGGCATTGTCCACTTaGTATCGTAGTCACCGGTGGCTGTGTAGTAATATCCGGCAAGAA | + |
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Preference number: 5 (lower is better) Translates to: AQLASVSRHNVALST*YRSHRWLCSNIRQE Trigger: TTCTTGCCGGATATTACTACACAGCCACCGGTGACTACGATATCAAGTGGACAATGCCACATTGTGTCTTGACACTGAAGCTAATTGGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CAA 90 bp | AGTGATTTTATCTGGTATAGTTCCAAGATAGAAAAAGTGGAGCAGGCAGGGCCTAGAGACGTCGCCAACTaGTTAAGGCTCAGATCCTCG | + |
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Preference number: 5 (lower is better) Translates to: SDFIWYSSKIEKVEQAGPRDVAN*LRLRSS Trigger: CGAGGATCTGAGCCTTAACAAGTTGGCGACGTCTCT...AGGCCCTGCCTGCTCCACTTTTTCTATCTTGGAACTATACCAGATAAAATCACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CAA 90 bp | TGGCGGTATCGGCACATATACAATCGTAGTAGATTGGCAGAAGAGAAACAACAGCGGGCTACCCAGGCATaGGTATTGATGTTGAAAGAG | + |
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Preference number: 5 (lower is better) Translates to: WRYRHIYNRSRLAEEKQQRATQA*VLMLKE Trigger: CTCTTTCAACATCAATACCAATGCCTGGGTAGCCCG...CTGTTGTTTCTCTTCTGCCAATCTACTACGATTGTATATGTGCCGATACCGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CAA 90 bp | TGGCGGTATCGGCACATATACAATCGTAGTAGATTGGCAGAAGAGAAACAACAGCAGCAGGTGACGTATTaGTACAGCACAAATTTGCCC | + |
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Preference number: 5 (lower is better) Translates to: WRYRHIYNRSRLAEEKQQQQVTY*YSTNLP Trigger: GGGCAAATTTGTGCTGTACAAATACGTCACCTGCTG...CTGTTGTTTCTCTTCTGCCAATCTACTACGATTGTATATGTGCCGATACCGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CAA 90 bp | AGTGATTTTATCTGGTATAGTTCCAAGATAGAAAAAGTGGAGCAGGCAGGGCCTGCATTGGTATTGATGTaGAAAGAGGCGATGGTGCCA | + |
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Preference number: 5 (lower is better) Translates to: SDFIWYSSKIEKVEQAGPALVLM*KEAMVP Trigger: TGGCACCATCGCCTCTTTCAACATCAATACCAATGC...AGGCCCTGCCTGCTCCACTTTTTCTATCTTGGAACTATACCAGATAAAATCACT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CAA 90 bp | TTCCAGATTTTGACAGTAGGCGTTCCTGATTTCCTAGATTTCTGTGGCTCTCAATCATGTAGTGGTTCATaGAAAATTGGGGCCCTACCA | + |
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Preference number: 5 (lower is better) Translates to: FQILTVGVPDFLDFCGSQSCSGS*KIGALP Trigger: TGGTAGGGCCCCAATTTTCAATGAACCACTACATGA...TTGAGAGCCACAGAAATCTAGGAAATCAGGAACGCCTACTGTCAAAATCTGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CAA 90 bp | TGGCGGTATCGGCACATATACAATCGTAGTAGATTGGCAGAAGAGAAACAACAGTATGGCATATTTCTGTaGCTCAGAGGTCAAGGAATT | + |
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Preference number: 5 (lower is better) Translates to: WRYRHIYNRSRLAEEKQQYGIFL*LRGQGI Trigger: AATTCCTTGACCTCTGAGCAACAGAAATATGCCATA...CTGTTGTTTCTCTTCTGCCAATCTACTACGATTGTATATGTGCCGATACCGCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS-3UTR CAA 90 bp | TTCCAGATTTTGACAGTAGGCGTTCCTGATTTCCTAGATTTCTGTGGCTCTCAACTTTTCTTGGCACCATaGCTTTGTGGATATAAGGCA | + |
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Preference number: 5 (lower is better) Translates to: FQILTVGVPDFLDFCGSQLFLAP*LCGYKA Trigger: TGCCTTATATCCACAAAGCAATGGTGCCAAGAAAAG...TTGAGAGCCACAGAAATCTAGGAAATCAGGAACGCCTACTGTCAAAATCTGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS GCA 72 bp | CTCAGATCCTCGACACCCGGCCACAGCCCCCGCATCTaGTCCAGCGTCTCTCCCATGTCCCCGTCCGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: LRSSTPGHSPRI*SSVSPMSPSAV Trigger: TACAGCGGACGGGGACATGGGAGAGACGCTGGAGCAGATGCGGGGGCTGTGGCCGGGTGTCGAGGATCTGAG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000004381.14 ENSMUST00000128721.7 |
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| CDS CAA 90 bp | ATGAGCCGCAGCGCCTGTTCCGACGCGCCCAGAGACGTCGCCAACTaGTTAAGGCTCAGATCCTCGACACCCGGCCACAGCCCCCGCATC | + |
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Preference number: 6 (lower is better) Translates to: MSRSACSDAPRDVAN*LRLRSSTPGHSPRI Trigger: GATGCGGGGGCTGTGGCCGGGTGTCGAGGATCTGAGCCTTAACAAGTTGGCGACGTCTCTGGGCGCGTCGGAACAGGCGCTGCGGCTCAT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000004381.14 ENSMUST00000128721.7 |
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| CDS CAA 72 bp | AGCGCCTGTTCCGACGCGCCCAGAGACGTCGCCAACTaGTTAAGGCTCAGATCCTCGACACCCGGCCACAGC | + |
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Preference number: 6 (lower is better) Translates to: SACSDAPRDVAN*LRLRSSTPGHS Trigger: GCTGTGGCCGGGTGTCGAGGATCTGAGCCTTAACAAGTTGGCGACGTCTCTGGGCGCGTCGGAACAGGCGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000004381.14 ENSMUST00000128721.7 |
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| CDS CAA 90 bp | CCTTCTGTGACCAGCCAGCAGGTGACGTATTTGTACAGCACAAATTaGCCCCAGATCAGCATGTACATGCAGCGGAACCAGAAAGGGCGG | + |
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Preference number: 6 (lower is better) Translates to: PSVTSQQVTYLYSTN*PQISMYMQRNQKGR Trigger: CCGCCCTTTCTGGTTCCGCTGCATGTACATGCTGATCTGGGGCAAATTTGTGCTGTACAAATACGTCACCTGCTGGCTGGTCACAGAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS CAA 90 bp | GTGCCATTGAAGCGAGGGGTGGTTTCAAAGAGCCACACTTTCATGTaGGCACAGGCATCCCATCTCACGGTCCCATTTTCATCGAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: VPLKRGVVSKSHTFM*AQASHLTVPFSSKP Trigger: TGGCTTCGATGAAAATGGGACCGTGAGATGGGATGCCTGTGCCAACATGAAAGTGTGGCTCTTTGAAACCACCCCTCGCTTCAATGGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS CAA 90 bp | GACAGAATGCACACTCCTTCTGTGACCAGCCAGCAGGTGACGTATTaGTACAGCACAAATTTGCCCCAGATCAGCATGTACATGCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: DRMHTPSVTSQQVTY*YSTNLPQISMYMQR Trigger: CCGCTGCATGTACATGCTGATCTGGGGCAAATTTGTGCTGTACAAATACGTCACCTGCTGGCTGGTCACAGAAGGAGTGTGCATTCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS GCA 72 bp | ATCTGGAAGCAAATCAGGTATCCTGAGTGTAGGCCATaGCAGAGGGCCAAGAACAGCAAGGAGAGACCTTGT | + |
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Preference number: 6 (lower is better) Translates to: IWKQIRYPECRP*QRAKNSKERPC Trigger: ACAAGGTCTCTCCTTGCTGTTCTTGGCCCTCTGGCATGGCCTACACTCAGGATACCTGATTTGCTTCCAGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS CAA 72 bp | ACCAGCCAGCAGGTGACGTATTTGTACAGCACAAATTaGCCCCAGATCAGCATGTACATGCAGCGGAACCAG | + |
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Preference number: 6 (lower is better) Translates to: TSQQVTYLYSTN*PQISMYMQRNQ Trigger: CTGGTTCCGCTGCATGTACATGCTGATCTGGGGCAAATTTGTGCTGTACAAATACGTCACCTGCTGGCTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS CAA 72 bp | AAGCGAGGGGTGGTTTCAAAGAGCCACACTTTCATGTaGGCACAGGCATCCCATCTCACGGTCCCATTTTCA | + |
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Preference number: 6 (lower is better) Translates to: KRGVVSKSHTFM*AQASHLTVPFS Trigger: TGAAAATGGGACCGTGAGATGGGATGCCTGTGCCAACATGAAAGTGTGGCTCTTTGAAACCACCCCTCGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS CAA 90 bp | GCTACCCAGGCATTGGTATTGATGTTGAAAGAGGCGATGGTGCCATaGAAGCGAGGGGTGGTTTCAAAGAGCCACACTTTCATGTTGGCA | + |
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Preference number: 6 (lower is better) Translates to: ATQALVLMLKEAMVP*KRGVVSKSHTFMLA Trigger: TGCCAACATGAAAGTGTGGCTCTTTGAAACCACCCCTCGCTTCAATGGCACCATCGCCTCTTTCAACATCAATACCAATGCCTGGGTAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS CAA 72 bp | CACACTCCTTCTGTGACCAGCCAGCAGGTGACGTATTaGTACAGCACAAATTTGCCCCAGATCAGCATGTAC | + |
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Preference number: 6 (lower is better) Translates to: HTPSVTSQQVTY*YSTNLPQISMY Trigger: GTACATGCTGATCTGGGGCAAATTTGTGCTGTACAAATACGTCACCTGCTGGCTGGTCACAGAAGGAGTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS TCA 72 bp | ATGCCAGAGGGCCAAGAACAGCAAGGAGAGACCTTGTaGGAGCTCTTTATTTCCAAGGAACTTGAGGCGTTT | + |
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Preference number: 6 (lower is better) Translates to: MPEGQEQQGETL*ELFISKELEAF Trigger: AAACGCCTCAAGTTCCTTGGAAATAAAGAGCTCTCACAAGGTCTCTCCTTGCTGTTCTTGGCCCTCTGGCAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS CAA 72 bp | GCATTGGTATTGATGTTGAAAGAGGCGATGGTGCCATaGAAGCGAGGGGTGGTTTCAAAGAGCCACACTTTC | + |
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Preference number: 6 (lower is better) Translates to: ALVLMLKEAMVP*KRGVVSKSHTF Trigger: GAAAGTGTGGCTCTTTGAAACCACCCCTCGCTTCAATGGCACCATCGCCTCTTTCAACATCAATACCAATGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS GCA 72 bp | TGTACAGCACAAATTTGCCCCAGATCAGCATGTACATaGAGCGGAACCAGAAAGGGCGGTTATCATAGTCTT | + |
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Preference number: 6 (lower is better) Translates to: CTAQICPRSACT*SGTRKGGYHSL Trigger: AAGACTATGATAACCGCCCTTTCTGGTTCCGCTGCATGTACATGCTGATCTGGGGCAAATTTGTGCTGTACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS TCA 72 bp | GCTTCAGTGTCAAGACACAATGTGGCATTGTCCACTTaGTATCGTAGTCACCGGTGGCTGTGTAGTAATATC | + |
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Preference number: 6 (lower is better) Translates to: ASVSRHNVALST*YRSHRWLCSNI Trigger: GATATTACTACACAGCCACCGGTGACTACGATATCAAGTGGACAATGCCACATTGTGTCTTGACACTGAAGC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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| CDS TCA 72 bp | TTCTTGGCACCATTGCTTTGTGGATATAAGGCAATATaGATAGTAGGCTCAAGAAGAAGACATGTCCAAGGA | + |
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Preference number: 6 (lower is better) Translates to: FLAPLLCGYKAI*IVGSRRRHVQG Trigger: TCCTTGGACATGTCTTCTTCTTGAGCCTACTATTCATATTGCCTTATATCCACAAAGCAATGGTGCCAAGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000004381.14 |
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