Pregenerated sensors for LPAR6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033446Ensembl transcript IDs: ENSMUST00000044405.8
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTTTCATCCACAAATTAGTCTTTCTGCATTGGAAGTATGAACTCTaGTTCATTTTCTGTTTTCTGTTTCCTGGTCGAGTGGCCAATTTC | + |
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Preference number: 1 (lower is better) Translates to: CFIHKLVFLHWKYEL*FIFCFLFPGRVANF Trigger: GAAATTGGCCACTCGACCAGGAAACAGAAAACAGAAAATGAAGCAGAGTTCATACTTCCAATGCAGAAAGACTAATTTGTGGATGAAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR CCA 90 bp | ACTCTACAGTGTATATCTAAGACTGCTACATGCATCTCATTCTTTTaGAGTGACATCAAGTACAGGAACTATAGGGCAACTGAAGTAAAC | + |
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Preference number: 1 (lower is better) Translates to: TLQCISKTATCISFF*SDIKYRNYRATEVN Trigger: GTTTACTTCAGTTGCCCTATAGTTCCTGTACTTGATGTCACTCCAAAAGAATGAGATGCATGTAGCAGTCTTAGATATACACTGTAGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR CCA 90 bp | TCACAGTATCCATGGTTGGTGCTTAGAATCACCTGTAACTGCAGCTTTAGGGGAAGTTCGAGGCCAGCCTaGTCTACAAAGCGAGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: SQYPWLVLRITCNCSFRGSSRPA*STKRAP Trigger: TGGAGCTCGCTTTGTAGACCAGGCTGGCCTCGAACT...TCCCCTAAAGCTGCAGTTACAGGTGATTCTAAGCACCAACCATGGATACTGTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR CAA 90 bp | TTTGTTAAGAATCTTACCAAAGTTGCCCAGTGGTGGTGCATACGTTaGATGCTAGCACCCAGGAGGCAGAGGCAGGTAGATCTCTTGAGT | + |
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Preference number: 2 (lower is better) Translates to: FVKNLTKVAQWWCIR*MLAPRRQRQVDLLS Trigger: ACTCAAGAGATCTACCTGCCTCTGCCTCCTGGGTGCTAGCATCAAACGTATGCACCACCACTGGGCAACTTTGGTAAGATTCTTAACAAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR TCA 90 bp | TCACAGTATCCATGGTTGGTGCTTAGAATCACCTGTAACTGCAGCTTTAGGGGAATGTTGAAAACTGTTTaGGGAGGAGCAGGAATGGCA | + |
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Preference number: 2 (lower is better) Translates to: SQYPWLVLRITCNCSFRGMLKTV*GGAGMA Trigger: TGCCATTCCTGCTCCTCCTCAAACAGTTTTCAACAT...TCCCCTAAAGCTGCAGTTACAGGTGATTCTAAGCACCAACCATGGATACTGTGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR TCA 90 bp | TCACAGTATCCATGGTTGGTGCTTAGAATCACCTGTAACTGCAGCTTTAGGGGACTTAGGGTTTTCTCATaGACCCTGCACATAGAAAGT | + |
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Preference number: 2 (lower is better) Translates to: SQYPWLVLRITCNCSFRGLRVFS*TLHIES Trigger: ACTTTCTATGTGCAGGGTTCATGAGAAAACCCTAAG...TCCCCTAAAGCTGCAGTTACAGGTGATTCTAAGCACCAACCATGGATACTGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR CCA 90 bp | TCACAGTATCCATGGTTGGTGCTTAGAATCACCTGTAACTGCAGCTTTAGGGGATTTCCTCTTGATCAGTaGACTGCTCACTGCTTTTCA | + |
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Preference number: 2 (lower is better) Translates to: SQYPWLVLRITCNCSFRGFPLDQ*TAHCFS Trigger: TGAAAAGCAGTGAGCAGTCCACTGATCAAGAGGAAA...TCCCCTAAAGCTGCAGTTACAGGTGATTCTAAGCACCAACCATGGATACTGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR TCA 90 bp | TCACAGTATCCATGGTTGGTGCTTAGAATCACCTGTAACTGCAGCTTTAGGGGACTCATTCTTTTGGAGTaGCATCAAGTACAGGAACTA | + |
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Preference number: 2 (lower is better) Translates to: SQYPWLVLRITCNCSFRGLILLE*HQVQEL Trigger: TAGTTCCTGTACTTGATGTCACTCCAAAAGAATGAG...TCCCCTAAAGCTGCAGTTACAGGTGATTCTAAGCACCAACCATGGATACTGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR CAA 90 bp | GAAGGCTTCTACCATCTGTCCCTTTATGAAGATGTTGAAAACTGTTaGAGGAGGAGCAGGAATGGCAGGATTGATACTGTCATTTTAAAG | + |
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Preference number: 2 (lower is better) Translates to: EGFYHLSLYEDVENC*RRSRNGRIDTVILK Trigger: CTTTAAAATGACAGTATCAATCCTGCCATTCCTGCTCCTCCTCAAACAGTTTTCAACATCTTCATAAAGGGACAGATGGTAGAAGCCTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR CAA 90 bp | TGCCATAAAGCTGTCTTCCATGACAATACTCTGATCTTCCTTTCTTaGAAGAAAGGCAGTGTAAAAAGAAGGCTTCTACCATCTGTCCCT | + |
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Preference number: 2 (lower is better) Translates to: CHKAVFHDNTLIFLS*KKGSVKRRLLPSVP Trigger: AGGGACAGATGGTAGAAGCCTTCTTTTTACACTGCCTTTCTTCAAAGAAAGGAAGATCAGAGTATTGTCATGGAAGACAGCTTTATGGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR TCA 90 bp | ACCAAATGCATTTTCTGTAGCTGTTTCATCCACAAATTAGTCTTTCTGCATTGGATGATCCTTTCCTCTTaGTCAGTGGACTGCTCACTG | + |
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Preference number: 2 (lower is better) Translates to: TKCIFCSCFIHKLVFLHWMILSS*SVDCSL Trigger: CAGTGAGCAGTCCACTGATCAAGAGGAAAGGATCAT...CCAATGCAGAAAGACTAATTTGTGGATGAAACAGCTACAGAAAATGCATTTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR GCA 90 bp | AGGCAGTGTAAAAAGAAGGCTTCTACCATCTGTCCCTTTATGAAGATGTTGAAACAGTGGACTGCTCACTaGTTTTCAACTCTACAGTGT | + |
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Preference number: 2 (lower is better) Translates to: RQCKKKASTICPFMKMLKQWTAH*FSTLQC Trigger: ACACTGTAGAGTTGAAAAGCAGTGAGCAGTCCACTG...TTTCAACATCTTCATAAAGGGACAGATGGTAGAAGCCTTCTTTTTACACTGCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR TCA 90 bp | ACACACACACACACACACACACACAGAGTTAACAATACTAAAAATCCATCTTTGGTAAGACACATGCCTTaGGATTCCTCCTTAGGGTTT | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHRVNNTKNPSLVRHMP*DSSLGF Trigger: AAACCCTAAGGAGGAATCTCAAGGCATGTGTCTTAC...CAAAGATGGATTTTTAGTATTGTTAACTCTGTGTGTGTGTGTGTGTGTGTGTGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR GCA 90 bp | ACACACACACACACACACACACACAGAGTTAACAATACTAAAAATCCATCTTTGTGTCATGCAGAAAACTaGAGTAGTCTCTTGGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHRVNNTKNPSLCHAEN*SSLLEE Trigger: TTCCTCCAAGAGACTACTGCAGTTTTCTGCATGACA...CAAAGATGGATTTTTAGTATTGTTAACTCTGTGTGTGTGTGTGTGTGTGTGTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCAGTGTAAAAAGAAGGCTTCTACCATCTGTCCCTTTATGAAGATGTTGAAAACTGCAGTAGTCTCTTaGAGGAAATGCTCTAAAACT | + |
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Preference number: 2 (lower is better) Translates to: RQCKKKASTICPFMKMLKTAVVS*RKCSKT Trigger: AGTTTTAGAGCATTTCCTCCAAGAGACTACTGCAGT...TTTCAACATCTTCATAAAGGGACAGATGGTAGAAGCCTTCTTTTTACACTGCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR GCA 90 bp | AGGCAGTGTAAAAAGAAGGCTTCTACCATCTGTCCCTTTATGAAGATGTTGAAATCTAAGACTGCTACATaGATCTCATTCTTTTGGAGT | + |
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Preference number: 2 (lower is better) Translates to: RQCKKKASTICPFMKMLKSKTAT*ISFFWS Trigger: ACTCCAAAAGAATGAGATGCATGTAGCAGTCTTAGA...TTTCAACATCTTCATAAAGGGACAGATGGTAGAAGCCTTCTTTTTACACTGCCT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR CCA 90 bp | AGGCAGTGTAAAAAGAAGGCTTCTACCATCTGTCCCTTTATGAAGATGTTGAAAAAAAATATTTTCTGTTaGAGCCGGAGAGATAGTTCC | + |
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Preference number: 2 (lower is better) Translates to: RQCKKKASTICPFMKMLKKNIFC*SRRDSS Trigger: GGAACTATCTCTCCGGCTCCAACAGAAAATATTTTT...TTTCAACATCTTCATAAAGGGACAGATGGTAGAAGCCTTCTTTTTACACTGCCT 38% GC, longest homopolymer 8 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR CCA 90 bp | ACACACACACACACACACACACACAGAGTTAACAATACTAAAAATCCATCTTTGTGCATCTCATTCTTTTaGAGTGACATCAAGTACAGG | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHRVNNTKNPSLCISFF*SDIKYR Trigger: CCTGTACTTGATGTCACTCCAAAAGAATGAGATGCA...CAAAGATGGATTTTTAGTATTGTTAACTCTGTGTGTGTGTGTGTGTGTGTGTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR TCA 90 bp | ACCAAATGCATTTTCTGTAGCTGTTTCATCCACAAATTAGTCTTTCTGCATTGGCAGGAATGGCAGGATTaGTACTGTCATTTTAAAGTA | + |
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Preference number: 2 (lower is better) Translates to: TKCIFCSCFIHKLVFLHWQEWQD*YCHFKV Trigger: TACTTTAAAATGACAGTATCAATCCTGCCATTCCTG...CCAATGCAGAAAGACTAATTTGTGGATGAAACAGCTACAGAAAATGCATTTGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR GCA 90 bp | ACCAAATGCATTTTCTGTAGCTGTTTCATCCACAAATTAGTCTTTCTGCATTGGTCTGTCTCAAAGCCATaGCTTTGTCTGTTTTGTATA | + |
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Preference number: 2 (lower is better) Translates to: TKCIFCSCFIHKLVFLHWSVSKP*LCLFCI Trigger: TATACAAAACAGACAAAGGCATGGCTTTGAGACAGA...CCAATGCAGAAAGACTAATTTGTGGATGAAACAGCTACAGAAAATGCATTTGGT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR GCA 90 bp | ACACACACACACACACACACACACAGAGTTAACAATACTAAAAATCCATCTTTGCGGTTATTTGATGACTaGCTTTCTAGGACTTTAAAG | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHRVNNTKNPSLRLFDD*LSRTLK Trigger: CTTTAAAGTCCTAGAAAGGCAGTCATCAAATAACCG...CAAAGATGGATTTTTAGTATTGTTAACTCTGTGTGTGTGTGTGTGTGTGTGTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR GCA 90 bp | ACACACACACACACACACACACACAGAGTTAACAATACTAAAAATCCATCTTTGTGGAAGTATGAACTCTaGTTCATTTTCTGTTTTCTG | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHRVNNTKNPSLWKYEL*FIFCFL Trigger: CAGAAAACAGAAAATGAAGCAGAGTTCATACTTCCA...CAAAGATGGATTTTTAGTATTGTTAACTCTGTGTGTGTGTGTGTGTGTGTGTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR GCA 72 bp | TGTAACTGCAGCTTTAGGGGATCTAAACTAAGCGAGTaGATGCGTGCGCCCGCGCAAACACACACACACACA | + |
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Preference number: 3 (lower is better) Translates to: CNCSFRGSKLSE*MRAPAQTHTHT Trigger: TGTGTGTGTGTGTGTTTGCGCGGGCGCACGCATGCACTCGCTTAGTTTAGATCCCCTAAAGCTGCAGTTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR CCA 72 bp | CCAGAGAACCCAAGGTCAGTTCACAGTATCCATGGTTaGTGCTTAGAATCACCTGTAACTGCAGCTTTAGGG | + |
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Preference number: 3 (lower is better) Translates to: PENPRSVHSIHG*CLESPVTAALG Trigger: CCCTAAAGCTGCAGTTACAGGTGATTCTAAGCACCAACCATGGATACTGTGAACTGACCTTGGGTTCTCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR GCA 72 bp | GAGAACCCAAGGTCAGTTCACAGTATCCATGGTTGGTaGTTAGAATCACCTGTAACTGCAGCTTTAGGGGAT | + |
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Preference number: 3 (lower is better) Translates to: ENPRSVHSIHGW*LESPVTAALGD Trigger: ATCCCCTAAAGCTGCAGTTACAGGTGATTCTAAGCACCAACCATGGATACTGTGAACTGACCTTGGGTTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR TCA 72 bp | ACACATGCCTTGAGATTCCTCCTTAGGGTTTTCTCATaGACCCTGCACATAGAAAGTTCGGAGAAATGCAGA | + |
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Preference number: 3 (lower is better) Translates to: THALRFLLRVFS*TLHIESSEKCR Trigger: TCTGCATTTCTCCGAACTTTCTATGTGCAGGGTTCATGAGAAAACCCTAAGGAGGAATCTCAAGGCATGTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR CCA 72 bp | TTTTCCAGAGAACCCAAGGTCAGTTCACAGTATCCATaGTTGGTGCTTAGAATCACCTGTAACTGCAGCTTT | + |
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Preference number: 3 (lower is better) Translates to: FSREPKVSSQYP*LVLRITCNCSF Trigger: AAAGCTGCAGTTACAGGTGATTCTAAGCACCAACCATGGATACTGTGAACTGACCTTGGGTTCTCTGGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR CAA 90 bp | ATACATATGTGTGTGTGTGTGTGTGTGTGTGTTCATGCTGTATTCAGACTTGAAACACAGTTTTCACAGTaGAACACGGAGCAGTCCCAG | + |
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Preference number: 3 (lower is better) Translates to: IHMCVCVCVCVHAVFRLETQFSQ*NTEQSQ Trigger: CTGGGACTGCTCCGTGTTCAACTGTGAAAACTGTGT...TTCAAGTCTGAATACAGCATGAACACACACACACACACACACACACATATGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR TCA 72 bp | ACCATCTGTCCCTTTATGAAGATGTTGAAAACTGTTTaGGGAGGAGCAGGAATGGCAGGATTGATACTGTCA | + |
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Preference number: 3 (lower is better) Translates to: TICPFMKMLKTV*GGAGMAGLILS Trigger: TGACAGTATCAATCCTGCCATTCCTGCTCCTCCTCAAACAGTTTTCAACATCTTCATAAAGGGACAGATGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR GCA 72 bp | TTTTGGAAAGAAGGCTCAGAGGTTAAGAGAACACACTaGTTTTCCAGAGAACCCAAGGTCAGTTCACAGTAT | + |
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Preference number: 3 (lower is better) Translates to: FWKEGSEVKRTH*FSREPKVSSQY Trigger: ATACTGTGAACTGACCTTGGGTTCTCTGGAAAAGCAGTGTGTTCTCTTAACCTCTGAGCCTTCTTTCCAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR CAA 90 bp | ACACACACACACACACACACACACAGAGTTAACAATACTAAAAATCCATCTTTGCATGATCCTTTCCTCTaGATCAGTGGACTGCTCACT | + |
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Preference number: 3 (lower is better) Translates to: THTHTHTHRVNNTKNPSLHDPFL*ISGLLT Trigger: AGTGAGCAGTCCACTGATCAAGAGGAAAGGATCATG...CAAAGATGGATTTTTAGTATTGTTAACTCTGTGTGTGTGTGTGTGTGTGTGTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR CAA 90 bp | GGGTGCCATAAAGCTGTCTTCCATGACAATACTCTGATCTTCCTTTCTTTGAAGCTTTGTCAAAAATCATaGCAGCCCAAACTCAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: GCHKAVFHDNTLIFLSLKLCQKS*QPKLRK Trigger: TTTTCTGAGTTTGGGCTGCAATGATTTTTGACAAAG...CTTCAAAGAAAGGAAGATCAGAGTATTGTCATGGAAGACAGCTTTATGGCACCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR CAA 90 bp | ACCAAATGCATTTTCTGTAGCTGTTTCATCCACAAATTAGTCTTTCTGCATTGGAGTAAGACACATGCCTaGAGATTCCTCCTTAGGGTT | + |
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Preference number: 3 (lower is better) Translates to: TKCIFCSCFIHKLVFLHWSKTHA*RFLLRV Trigger: AACCCTAAGGAGGAATCTCAAGGCATGTGTCTTACT...CCAATGCAGAAAGACTAATTTGTGGATGAAACAGCTACAGAAAATGCATTTGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR TCA 72 bp | GCAGTAGTCTCTTGGAGGAAATGCTCTAAAACTGTGTaGCTAGTTCAAACTGGTTTTCTTCACTGTTTACAG | + |
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Preference number: 3 (lower is better) Translates to: AVVSWRKCSKTV*LVQTGFLHCLQ Trigger: CTGTAAACAGTGAAGAAAACCAGTTTGAACTAGTCACACAGTTTTAGAGCATTTCCTCCAAGAGACTACTGC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR CAA 90 bp | AGGCAGTGTAAAAAGAAGGCTTCTACCATCTGTCCCTTTATGAAGATGTTGAAATCTTTTTCGGTAGTGTaGGTATTAAACCTAGGGTCT | + |
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Preference number: 3 (lower is better) Translates to: RQCKKKASTICPFMKMLKSFSVV*VLNLGS Trigger: AGACCCTAGGTTTAATACCAACACTACCGAAAAAGA...TTTCAACATCTTCATAAAGGGACAGATGGTAGAAGCCTTCTTTTTACACTGCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR-3UTR CAA 90 bp | ACCAAATGCATTTTCTGTAGCTGTTTCATCCACAAATTAGTCTTTCTGCATTGGGAAAATGACTATGCTTaGTCAAAAATCATTGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: TKCIFCSCFIHKLVFLHWENDYA*SKIIAA Trigger: GGCTGCAATGATTTTTGACAAAGCATAGTCATTTTC...CCAATGCAGAAAGACTAATTTGTGGATGAAACAGCTACAGAAAATGCATTTGGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR CAA 72 bp | AATCTTACCAAAGTTGCCCAGTGGTGGTGCATACGTTaGATGCTAGCACCCAGGAGGCAGAGGCAGGTAGAT | + |
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Preference number: 4 (lower is better) Translates to: NLTKVAQWWCIR*MLAPRRQRQVD Trigger: ATCTACCTGCCTCTGCCTCCTGGGTGCTAGCATCAAACGTATGCACCACCACTGGGCAACTTTGGTAAGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| 3UTR CAA 72 bp | TCCAGAGAACCCAAGGTCAGTTCACAGTATCCATGGTaGGTGCTTAGAATCACCTGTAACTGCAGCTTTAGG | + |
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Preference number: 4 (lower is better) Translates to: SREPKVSSQYPW*VLRITCNCSFR Trigger: CCTAAAGCTGCAGTTACAGGTGATTCTAAGCACCAACCATGGATACTGTGAACTGACCTTGGGTTCTCTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS-3UTR GCA 90 bp | GGGTGCCATAAAGCTGTCTTCCATGACAATACTCTGATCTTCCTTTCTTTGAAGCGACTGAAAGAAAACTaGAGGCGCACTTCCTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: GCHKAVFHDNTLIFLSLKRLKEN*RRTSSH Trigger: ATGGGAGGAAGTGCGCCTGCAGTTTTCTTTCAGTCG...CTTCAAAGAAAGGAAGATCAGAGTATTGTCATGGAAGACAGCTTTATGGCACCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS-3UTR CCA 90 bp | GGGTGCCATAAAGCTGTCTTCCATGACAATACTCTGATCTTCCTTTCTTTGAAGTTTCCATGTGGCCGCTaGAAAGTTCTCAAAGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: GCHKAVFHDNTLIFLSLKFPCGR*KVLKAG Trigger: GCCTGCTTTGAGAACTTTCCAGCGGCCACATGGAAA...CTTCAAAGAAAGGAAGATCAGAGTATTGTCATGGAAGACAGCTTTATGGCACCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS-3UTR CCA 90 bp | TCACAGTATCCATGGTTGGTGCTTAGAATCACCTGTAACTGCAGCTTTAGGGGAGATAAGTTTTCCATGTaGCCGCTGGAAAGTTCTCAA | + |
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Preference number: 4 (lower is better) Translates to: SQYPWLVLRITCNCSFRGDKFSM*PLESSQ Trigger: TTGAGAACTTTCCAGCGGCCACATGGAAAACTTATC...TCCCCTAAAGCTGCAGTTACAGGTGATTCTAAGCACCAACCATGGATACTGTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS-3UTR CCA 90 bp | AGGCAGTGTAAAAAGAAGGCTTCTACCATCTGTCCCTTTATGAAGATGTTGAAAGGTCAAAGCAGCAGTTaGAAACAGCGATGCAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: RQCKKKASTICPFMKMLKGQSSS*KQRCRE Trigger: CTCTCTGCATCGCTGTTTCCAACTGCTGCTTTGACC...TTTCAACATCTTCATAAAGGGACAGATGGTAGAAGCCTTCTTTTTACACTGCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS-3UTR TCA 90 bp | ACACACACACACACACACACACACAGAGTTAACAATACTAAAAATCCATCTTTGCTCAAAGCAGGCTTCTaGGGTATTGTTCCCCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: THTHTHTHRVNNTKNPSLLKAGF*GIVPLR Trigger: TCTCAGGGGAACAATACCTCAGAAGCCTGCTTTGAG...CAAAGATGGATTTTTAGTATTGTTAACTCTGTGTGTGTGTGTGTGTGTGTGTGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS-3UTR TCA 90 bp | ATACATATGTGTGTGTGTGTGTGTGTGTGTGTTCATGCTGTATTCAGACTTGAAAAATTCTCAGTGCCCTaGACTTCAGAGAACCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: IHMCVCVCVCVHAVFRLEKFSVP*TSENLE Trigger: CTCCAGGTTCTCTGAAGTTCAGGGCACTGAGAATTT...TTCAAGTCTGAATACAGCATGAACACACACACACACACACACACACATATGTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS-3UTR TCA 90 bp | ACCAAATGCATTTTCTGTAGCTGTTTCATCCACAAATTAGTCTTTCTGCATTGGTTCCTCCCATCACTGTaGACCACACAGCAATGCAAA | + |
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Preference number: 4 (lower is better) Translates to: TKCIFCSCFIHKLVFLHWFLPSL*TTQQCK Trigger: TTTGCATTGCTGTGTGGTTCACAGTGATGGGAGGAA...CCAATGCAGAAAGACTAATTTGTGGATGAAACAGCTACAGAAAATGCATTTGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS-3UTR TCA 90 bp | ATACATATGTGTGTGTGTGTGTGTGTGTGTGTTCATGCTGTATTCAGACTTGAAGAAATCGATCTACACTaGTACAGGTTAAGAACAGAA | + |
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Preference number: 4 (lower is better) Translates to: IHMCVCVCVCVHAVFRLEEIDLH*YRLRTE Trigger: TTCTGTTCTTAACCTGTATCAGTGTAGATCGATTTC...TTCAAGTCTGAATACAGCATGAACACACACACACACACACACACACATATGTAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS-3UTR GCA 90 bp | ATACATATGTGTGTGTGTGTGTGTGTGTGTGTTCATGCTGTATTCAGACTTGAAAAATGGGTAGACAATTaGCAGAAATCGATCTACACT | + |
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Preference number: 4 (lower is better) Translates to: IHMCVCVCVCVHAVFRLEKWVDN*QKSIYT Trigger: AGTGTAGATCGATTTCTGGCAATTGTCTACCCATTT...TTCAAGTCTGAATACAGCATGAACACACACACACACACACACACACATATGTAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS-3UTR GCA 90 bp | GAAGTCATGTTACCAATGGGTAATTTAGTTTTCAGGCTAGTTCAAACAGGTTATAGGTTAAGAACAGAATaGTTCCATACATATTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: EVMLPMGNLVFRLVQTGYRLRTE*FHTYWC Trigger: ACACCAATATGTATGGAAGCATTCTGTTCTTAACCT...ATAACCTGTTTGAACTAGCCTGAAAACTAAATTACCCATTGGTAACATGACTTC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS TCA 90 bp | GGGTCGACTGAAAGAAAACTGCAGGCGCACTTCCTCCCATCACTGTaGACCACACAGCAATGCAAACGATCTTTGCATTTCGTTTCGTTC | + |
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Preference number: 5 (lower is better) Translates to: GSTERKLQAHFLPSL*TTQQCKRSLHFVSF Trigger: GAACGAAACGAAATGCAAAGATCGTTTGCATTGCTGTGTGGTTCACAGTGATGGGAGGAAGTGCGCCTGCAGTTTTCTTTCAGTCGACCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS-3UTR CAA 90 bp | AGGCAGTGTAAAAAGAAGGCTTCTACCATCTGTCCCTTTATGAAGATGTTGAAAGGGTCAAAGCAGCAGTaGGAAACAGCGATGCAGAGA | + |
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Preference number: 5 (lower is better) Translates to: RQCKKKASTICPFMKMLKGSKQQ*ETAMQR Trigger: TCTCTGCATCGCTGTTTCCAACTGCTGCTTTGACCC...TTTCAACATCTTCATAAAGGGACAGATGGTAGAAGCCTTCTTTTTACACTGCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS-3UTR CAA 90 bp | ATACATATGTGTGTGTGTGTGTGTGTGTGTGTTCATGCTGTATTCAGACTTGAAGTTTCATTTCTCACTTaGAGGGCACAGATGAAAATG | + |
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Preference number: 5 (lower is better) Translates to: IHMCVCVCVCVHAVFRLEVSFLT*RAQMKM Trigger: CATTTTCATCTGTGCCCTCAAAGTGAGAAATGAAAC...TTCAAGTCTGAATACAGCATGAACACACACACACACACACACACACATATGTAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS TCA 72 bp | GGTCAAAGCAGCAGTTGGAAACAGCGATGCAGAGAGTaGTCGGGTACATGGTCCTCACTGCCGCCACCACAG | + |
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Preference number: 6 (lower is better) Translates to: GQSSSWKQRCRE*SGTWSSLPPPQ Trigger: CTGTGGTGGCGGCAGTGAGGACCATGTACCCGATCACTCTCTGCATCGCTGTTTCCAACTGCTGCTTTGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS TCA 72 bp | CCATGTGGCCGCTGGAAAGTTCTCAAAGCAGGCTTCTaGGGTATTGTTCCCCTGAGAGTGGGTCGACTGAAA | + |
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Preference number: 6 (lower is better) Translates to: PCGRWKVLKAGF*GIVPLRVGRLK Trigger: TTTCAGTCGACCCACTCTCAGGGGAACAATACCTCAGAAGCCTGCTTTGAGAACTTTCCAGCGGCCACATGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS GCA 72 bp | ATTGTTCCCCTGAGAGTGGGTCGACTGAAAGAAAACTaGAGGCGCACTTCCTCCCATCACTGTGAACCACAC | + |
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Preference number: 6 (lower is better) Translates to: IVPLRVGRLKEN*RRTSSHHCEPH Trigger: GTGTGGTTCACAGTGATGGGAGGAAGTGCGCCTGCAGTTTTCTTTCAGTCGACCCACTCTCAGGGGAACAAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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| CDS CAA 90 bp | TTTCTCACTTTGAGGGCACAGATGAAAATGTATATCGCAACACAGTaGGATATCAGCCCAAGCACGAAGACCATGCTGAACATGCACCCG | + |
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Preference number: 6 (lower is better) Translates to: FLTLRAQMKMYIATQ*DISPSTKTMLNMHP Trigger: CGGGTGCATGTTCAGCATGGTCTTCGTGCTTGGGCTGATATCCAACTGTGTTGCGATATACATTTTCATCTGTGCCCTCAAAGTGAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000044405.8 |
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