Pregenerated sensors for LPAR4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000049929Ensembl transcript IDs: ENSMUST00000060576.8
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGCTCCCGACCTGAGCACAAATTCAGCAGCGCCTTGGCTACAATGTaGTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGC | + |
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Preference number: 1 (lower is better) Translates to: CSRPEHKFSSALATM*SKMYRREYGFQNYS Trigger: GCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGCTCAGGTCGGGAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| 3UTR CCA 90 bp | CTTTTTCAATATGCTCCCGACCTGAGCACAAATTCAGCAGCGCCTTaGCTACAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTC | + |
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Preference number: 1 (lower is better) Translates to: LFQYAPDLSTNSAAP*LQCAPKCTEESMDF Trigger: GAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGCTCAGGTCGGGAGCATATTGAAAAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| 3UTR TCA 90 bp | ATCTTGCTGCTACTATTCTATTCACTTACTTTTTCAATTTACTCCTaGCCTGGGCACAAATACTGTAGCTCTCTGGCTGTAATGTGTCCC | + |
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Preference number: 1 (lower is better) Translates to: ILLLLFYSLTFSIYS*PGHKYCSSLAVMCP Trigger: GGGACACATTACAGCCAGAGAGCTACAGTATTTGTGCCCAGGTCAGGAGTAAATTGAAAAAGTAAGTGAATAGAATAGTAGCAGCAAGAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| 3UTR CAA 90 bp | TCTTTTTCAATATGCTCCCGACCTGAGCACAAATTCAGCAGCGCCTaGGCTACAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTT | + |
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Preference number: 2 (lower is better) Translates to: SFSICSRPEHKFSSA*ATMCSKMYRREYGF Trigger: AAATCCATACTCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGCTCAGGTCGGGAGCATATTGAAAAAGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| 3UTR-3UTR TCA 90 bp | GCACAAATTCAGCAGCGCCTTGGCTACAATGTGCTCCAAAATGTACAGAAGAGATTTTCAATTTACTCCTaGCCTGGGCACAAATACTGT | + |
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Preference number: 2 (lower is better) Translates to: AQIQQRLGYNVLQNVQKRFSIYS*PGHKYC Trigger: ACAGTATTTGTGCCCAGGTCAGGAGTAAATTGAAAA...TCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| 3UTR-3UTR GCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCAGCTCTAAGATATCTTaGTGCTACTATTCTATTCAC | + |
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Preference number: 2 (lower is better) Translates to: QCAPKCTEESMDFKITAISSKIS*CYYSIH Trigger: GTGAATAGAATAGTAGCAGCAAGATATCTTAGAGCT...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| 3UTR-3UTR CCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCGTATCTGACTGCATTTaGTACATTACTCTATTCTCA | + |
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Preference number: 2 (lower is better) Translates to: QCAPKCTEESMDFKITAIVSDCI*YITLFS Trigger: TGAGAATAGAGTAATGTACCAAATGCAGTCAGATAC...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| 3UTR CCA 72 bp | TATGCTCCCGACCTGAGCACAAATTCAGCAGCGCCTTaGCTACAATGTGCTCCAAAATGTACAGAAGAGAGT | + |
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Preference number: 3 (lower is better) Translates to: YAPDLSTNSAAP*LQCAPKCTEES Trigger: ACTCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGCTCAGGTCGGGAGCATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR TCA 90 bp | GCACAAATTCAGCAGCGCCTTGGCTACAATGTGCTCCAAAATGTACAGAAGAGAGAGGAACGCAGTCCCTaGGATCTTACAGAGGGTGTC | + |
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Preference number: 4 (lower is better) Translates to: AQIQQRLGYNVLQNVQKREERSP*DLTEGV Trigger: GACACCCTCTGTAAGATCTCAGGGACTGCGTTCCTC...TCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| 3UTR CAA 72 bp | ATATGCTCCCGACCTGAGCACAAATTCAGCAGCGCCTaGGCTACAATGTGCTCCAAAATGTACAGAAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: ICSRPEHKFSSA*ATMCSKMYRRE Trigger: CTCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGCTCAGGTCGGGAGCATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR TCA 90 bp | GCACAAATTCAGCAGCGCCTTGGCTACAATGTGCTCCAAAATGTACAGAAGAGATTATTGGTCCCAATCTaGGACAATGTTGCAGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: AQIQQRLGYNVLQNVQKRLLVPI*DNVAGL Trigger: CAAGCCTGCAACATTGTCTCAGATTGGGACCAATAA...TCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR GCA 90 bp | GCACAAATTCAGCAGCGCCTTGGCTACAATGTGCTCCAAAATGTACAGAAGAGAAGTATTATTGGCAGTTaGATTTCCCAACCTGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: AQIQQRLGYNVLQNVQKRSIIGS*ISQPGS Trigger: AGACCCAGGTTGGGAAATGCAACTGCCAATAATACT...TCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR GCA 90 bp | GCACAAATTCAGCAGCGCCTTGGCTACAATGTGCTCCAAAATGTACAGAAGAGAGCAACAATTCAGAGTTaGAAGGCACAAGGTAATTGG | + |
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Preference number: 4 (lower is better) Translates to: AQIQQRLGYNVLQNVQKRATIQS*KAQGNW Trigger: CCAATTACCTTGTGCCTTGCAACTCTGAATTGTTGC...TCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCCTCCAGCGCACACAATaGCGGAATTCCTCCTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: QCAPKCTEESMDFKITAILQRTQ*RNSSWS Trigger: GGACCAGGAGGAATTCCGCCATTGTGTGCGCTGGAG...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CCA 90 bp | GCACAAATTCAGCAGCGCCTTGGCTACAATGTGCTCCAAAATGTACAGAAGAGACAATTAGTAATGGCTTaGGAGCGTACCAAGGCATAT | + |
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Preference number: 4 (lower is better) Translates to: AQIQQRLGYNVLQNVQKRQLVMA*ERTKAY Trigger: ATATGCCTTGGTACGCTCCCAAGCCATTACTAATTG...TCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR TCA 90 bp | GCACAAATTCAGCAGCGCCTTGGCTACAATGTGCTCCAAAATGTACAGAAGAGATTCCCAACCTGGGTCTaGGACTTGAATTTAAATCTT | + |
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Preference number: 4 (lower is better) Translates to: AQIQQRLGYNVLQNVQKRFPTWV*DLNLNL Trigger: AAGATTTAAATTCAAGTCTCAGACCCAGGTTGGGAA...TCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CCA 90 bp | GCACAAATTCAGCAGCGCCTTGGCTACAATGTGCTCCAAAATGTACAGAAGAGAGAGAACGGAGTTGTATaGTACAAAGCATACCACAAA | + |
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Preference number: 4 (lower is better) Translates to: AQIQQRLGYNVLQNVQKRENGVV*YKAYHK Trigger: TTTGTGGTATGCTTTGTACCATACAACTCCGTTCTC...TCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCCTGGAAGGGAAGGTTTaGGGGTCAGAGGTGTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: QCAPKCTEESMDFKITAILEGKV*GSEVSQ Trigger: CTGAGACACCTCTGACCCCCAAACCTTCCCTTCCAG...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR TCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCTCCCATAGATGTTGGTaGGGAACGCAGTCCCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: QCAPKCTEESMDFKITAISHRCW*GTQSLR Trigger: TCTCAGGGACTGCGTTCCTCACCAACATCTATGGGA...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| 3UTR CAA 72 bp | ATTCATTTCCTCTCAAACTTGGTGACAGTTGAGCAGTaGCCTAGCTGCATTTTGATACAAGGCATCATCTCT | + |
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Preference number: 4 (lower is better) Translates to: IHFLSNLVTVEQ*PSCILIQGIIS Trigger: AGAGATGATGCCTTGTATCAAAATGCAGCTAGGCAACTGCTCAACTGTCACCAAGTTTGAGAGGAAATGAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR TCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCCTGAAATACCACCACTaGGGACTAGGATCCAGACTC | + |
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Preference number: 4 (lower is better) Translates to: QCAPKCTEESMDFKITAILKYHH*GLGSRL Trigger: GAGTCTGGATCCTAGTCCTCAGTGGTGGTATTTCAG...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCTTCCTCTTGGATAGCTaGAAGGGAAGGTTTGGGGGT | + |
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Preference number: 4 (lower is better) Translates to: QCAPKCTEESMDFKITAIFLLDS*KGRFGG Trigger: ACCCCCAAACCTTCCCTTCCAGCTATCCAAGAGGAA...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCGGAAGGGATAGACAATaGCTAGGAAACGATCCACAC | + |
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Preference number: 4 (lower is better) Translates to: QCAPKCTEESMDFKITAIGRDRQ*LGNDPH Trigger: GTGTGGATCGTTTCCTAGCCATTGTCTATCCCTTCC...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCTCTTCCAGACACGTTTaGAGAAGCCTTCAAAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: QCAPKCTEESMDFKITAISSRHV*RSLQSK Trigger: CTTGCTTTGAAGGCTTCTCCAAACGTGTCTGGAAGA...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR TCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCCTGCCATATGCACTGTaGTCATCTTCAACACTTTTT | + |
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Preference number: 4 (lower is better) Translates to: QCAPKCTEESMDFKITAILPYAL*SSSTLF Trigger: AAAAAGTGTTGAAGATGATCACAGTGCATATGGCAG...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR GCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCACAAACACTGCCATATaGACTGTGATCATCTTCAAC | + |
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Preference number: 4 (lower is better) Translates to: QCAPKCTEESMDFKITAITNTAI*TVIIFN Trigger: GTTGAAGATGATCACAGTGCATATGGCAGTGTTTGT...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCCAATGCAAGTATTATTaGCAGTTGCATTTCCCAACC | + |
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Preference number: 4 (lower is better) Translates to: QCAPKCTEESMDFKITAIQCKYY*QLHFPT Trigger: GGTTGGGAAATGCAACTGCCAATAATACTTGCATTG...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR TCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCCCATTATTTGTTGTTTaGTCACTAACTTCCTCTTGG | + |
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Preference number: 4 (lower is better) Translates to: QCAPKCTEESMDFKITAIPLFVV*SLTSSW Trigger: CCAAGAGGAAGTTAGTGATCAAACAACAAATAATGG...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CCA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCAAGGCACAAGGTAATTaGGTACATGATCTTTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: QCAPKCTEESMDFKITAIKAQGN*VHDLCK Trigger: TTTGCAAAGATCATGTACCCAATTACCTTGTGCCTT...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS TCA 90 bp | GGATCCAGACTCCAGCGCACACAATGGCGGAATTCCTCCTGGTCCTaGTGGTACGCGATCGGAAGGGATAGACAATGGCTAGGAAACGAT | + |
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Preference number: 5 (lower is better) Translates to: GSRLQRTQWRNSSWS*WYAIGRDRQWLGND Trigger: ATCGTTTCCTAGCCATTGTCTATCCCTTCCGATCGCGTACCATCAGGACCAGGAGGAATTCCGCCATTGTGTGCGCTGGAGTCTGGATCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS TCA 90 bp | GAGGAAGAGCATGCTCCCATAGATGTTGGTGAGGAACGCAGTCCCTaGGATCTTACAGAGGGTGTCACCAAAAGGCCAGTGGCGATTAAA | + |
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Preference number: 5 (lower is better) Translates to: EEEHAPIDVGEERSP*DLTEGVTKRPVAIK Trigger: TTTAATCGCCACTGGCCTTTTGGTGACACCCTCTGTAAGATCTCAGGGACTGCGTTCCTCACCAACATCTATGGGAGCATGCTCTTCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CAA 90 bp | GCACAAATTCAGCAGCGCCTTGGCTACAATGTGCTCCAAAATGTACAGAAGAGACAATCTGAGACAATGTaGCAGGCTTGCGGAGGGTTC | + |
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Preference number: 5 (lower is better) Translates to: AQIQQRLGYNVLQNVQKRQSETM*QACGGF Trigger: GAACCCTCCGCAAGCCTGCAACATTGTCTCAGATTG...TCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CAA 90 bp | GCACAAATTCAGCAGCGCCTTGGCTACAATGTGCTCCAAAATGTACAGAAGAGAGTCTTCCAGACACGTTaGGAGAAGCCTTCAAAGCAA | + |
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Preference number: 5 (lower is better) Translates to: AQIQQRLGYNVLQNVQKRVFQTR*EKPSKQ Trigger: TTGCTTTGAAGGCTTCTCCAAACGTGTCTGGAAGAC...TCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CAA 90 bp | GCACAAATTCAGCAGCGCCTTGGCTACAATGTGCTCCAAAATGTACAGAAGAGAGCAATTAGTAATGGCTaGGGAGCGTACCAAGGCATA | + |
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Preference number: 5 (lower is better) Translates to: AQIQQRLGYNVLQNVQKRAISNG*GAYQGI Trigger: TATGCCTTGGTACGCTCCCAAGCCATTACTAATTGC...TCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS CCA 90 bp | ACCACCATTATTTGTTGTTTGATCACTAACTTCCTCTTGGATAGCTaGAAGGGAAGGTTTGGGGGTCAGAGGTGTCTCAGTCTTAAACAG | + |
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Preference number: 5 (lower is better) Translates to: TTIICCLITNFLLDS*KGRFGGQRCLSLKQ Trigger: CTGTTTAAGACTGAGACACCTCTGACCCCCAAACCTTCCCTTCCAGCTATCCAAGAGGAAGTTAGTGATCAAACAACAAATAATGGTGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CAA 90 bp | GCACAAATTCAGCAGCGCCTTGGCTACAATGTGCTCCAAAATGTACAGAAGAGAAAAAAGAGAACGGAGTaGTATGGTACAAAGCATACC | + |
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Preference number: 5 (lower is better) Translates to: AQIQQRLGYNVLQNVQKRKKRTE*YGTKHT Trigger: GGTATGCTTTGTACCATACAACTCCGTTCTCTTTTT...TCTCTTCTGTACATTTTGGAGCACATTGTAGCCAAGGCGCTGCTGAATTTGTGC 43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CAA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCTCAGAGAGGGCCAGGTaGGTGATGAAAATAGCCGTC | + |
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Preference number: 5 (lower is better) Translates to: QCAPKCTEESMDFKITAISERAR*VMKIAV Trigger: GACGGCTATTTTCATCACCAACCTGGCCCTCTCTGA...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CAA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCATCACTAACTTCCTCTaGGATAGCTGGAAGGGAAGG | + |
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Preference number: 5 (lower is better) Translates to: QCAPKCTEESMDFKITAIITNFL*DSWKGR Trigger: CCTTCCCTTCCAGCTATCCAAGAGGAAGTTAGTGAT...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS CCA 90 bp | TACATGATCTTTGCAAACCTTTCCAATAAGCAATTAGTAATGGCTTaGGAGCGTACCAAGGCATATAAAAAGAGAACGGAGTTGTATGGT | + |
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Preference number: 5 (lower is better) Translates to: YMIFANLSNKQLVMA*ERTKAYKKRTELYG Trigger: ACCATACAACTCCGTTCTCTTTTTATATGCCTTGGTACGCTCCCAAGCCATTACTAATTGCTTATTGGAAAGGTTTGCAAAGATCATGTA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS-3UTR CAA 90 bp | CAATGTGCTCCAAAATGTACAGAAGAGAGTATGGATTTCAAAATTACAGCTATCAAGTATTATTGGCAGTaGCATTTCCCAACCTGGGTC | + |
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Preference number: 5 (lower is better) Translates to: QCAPKCTEESMDFKITAIKYYWQ*HFPTWV Trigger: GACCCAGGTTGGGAAATGCAACTGCCAATAATACTT...GATAGCTGTAATTTTGAAATCCATACTCTCTTCTGTACATTTTGGAGCACATTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS TCA 72 bp | CTCCAGCGCACACAATGGCGGAATTCCTCCTGGTCCTaGTGGTACGCGATCGGAAGGGATAGACAATGGCTA | + |
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Preference number: 6 (lower is better) Translates to: LQRTQWRNSSWS*WYAIGRDRQWL Trigger: TAGCCATTGTCTATCCCTTCCGATCGCGTACCATCAGGACCAGGAGGAATTCCGCCATTGTGTGCGCTGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS TCA 72 bp | CATGCTCCCATAGATGTTGGTGAGGAACGCAGTCCCTaGGATCTTACAGAGGGTGTCACCAAAAGGCCAGTG | + |
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Preference number: 6 (lower is better) Translates to: HAPIDVGEERSP*DLTEGVTKRPV Trigger: CACTGGCCTTTTGGTGACACCCTCTGTAAGATCTCAGGGACTGCGTTCCTCACCAACATCTATGGGAGCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS CAA 72 bp | ATAGTGATCTTGGACAGGTATGTCTTCCAGACACGTTaGGAGAAGCCTTCAAAGCAAGTGGTGGTCGCATTG | + |
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Preference number: 6 (lower is better) Translates to: IVILDRYVFQTR*EKPSKQVVVAL Trigger: CAATGCGACCACCACTTGCTTTGAAGGCTTCTCCAAACGTGTCTGGAAGACATACCTGTCCAAGATCACTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS CCA 72 bp | ATTTGTTGTTTGATCACTAACTTCCTCTTGGATAGCTaGAAGGGAAGGTTTGGGGGTCAGAGGTGTCTCAGT | + |
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Preference number: 6 (lower is better) Translates to: ICCLITNFLLDS*KGRFGGQRCLS Trigger: ACTGAGACACCTCTGACCCCCAAACCTTCCCTTCCAGCTATCCAAGAGGAAGTTAGTGATCAAACAACAAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS CAA 90 bp | GTAATGGCTTGGGAGCGTACCAAGGCATATAAAAAGAGAACGGAGTaGTATGGTACAAAGCATACCACAAACACTGCCATATGCACTGTG | + |
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Preference number: 6 (lower is better) Translates to: VMAWERTKAYKKRTE*YGTKHTTNTAICTV Trigger: CACAGTGCATATGGCAGTGTTTGTGGTATGCTTTGTACCATACAACTCCGTTCTCTTTTTATATGCCTTGGTACGCTCCCAAGCCATTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS CAA 72 bp | TGGGAGCGTACCAAGGCATATAAAAAGAGAACGGAGTaGTATGGTACAAAGCATACCACAAACACTGCCATA | + |
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Preference number: 6 (lower is better) Translates to: WERTKAYKKRTE*YGTKHTTNTAI Trigger: TATGGCAGTGTTTGTGGTATGCTTTGTACCATACAACTCCGTTCTCTTTTTATATGCCTTGGTACGCTCCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS CAA 90 bp | TCAATGAATATAGTGATCTTGGACAGGTATGTCTTCCAGACACGTTaGGAGAAGCCTTCAAAGCAAGTGGTGGTCGCATTGTTGACATTA | + |
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Preference number: 6 (lower is better) Translates to: SMNIVILDRYVFQTR*EKPSKQVVVALLTL Trigger: TAATGTCAACAATGCGACCACCACTTGCTTTGAAGGCTTCTCCAAACGTGTCTGGAAGACATACCTGTCCAAGATCACTATATTCATTGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS CAA 90 bp | ATCAGAGGAATGATGAATCCAACAACTTCAATGAATATAGTGATCTaGGACAGGTATGTCTTCCAGACACGTTTGGAGAAGCCTTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: IRGMMNPTTSMNIVI*DRYVFQTRLEKPSK Trigger: CTTTGAAGGCTTCTCCAAACGTGTCTGGAAGACATACCTGTCCAAGATCACTATATTCATTGAAGTTGTTGGATTCATCATTCCTCTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS CCA 72 bp | TTTGCAAACCTTTCCAATAAGCAATTAGTAATGGCTTaGGAGCGTACCAAGGCATATAAAAAGAGAACGGAG | + |
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Preference number: 6 (lower is better) Translates to: FANLSNKQLVMA*ERTKAYKKRTE Trigger: CTCCGTTCTCTTTTTATATGCCTTGGTACGCTCCCAAGCCATTACTAATTGCTTATTGGAAAGGTTTGCAAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS CAA 72 bp | TTATACTTGAAGGAATCATCAACAATGCAAGTATTATaGGCAGTTGCATTTCCCAACCTGGGTCTGAGACTT | + |
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Preference number: 6 (lower is better) Translates to: LYLKESSTMQVL*AVAFPNLGLRL Trigger: AAGTCTCAGACCCAGGTTGGGAAATGCAACTGCCAATAATACTTGCATTGTTGATGATTCCTTCAAGTATAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS CAA 72 bp | ATGATGAATCCAACAACTTCAATGAATATAGTGATCTaGGACAGGTATGTCTTCCAGACACGTTTGGAGAAG | + |
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Preference number: 6 (lower is better) Translates to: MMNPTTSMNIVI*DRYVFQTRLEK Trigger: CTTCTCCAAACGTGTCTGGAAGACATACCTGTCCAAGATCACTATATTCATTGAAGTTGTTGGATTCATCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS TCA 72 bp | AAGTATTATTGGCAGTTGCATTTCCCAACCTGGGTCTaGGACTTGAATTTAAATCTTGGAATTGGAAGTCAA | + |
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Preference number: 6 (lower is better) Translates to: KYYWQLHFPTWV*DLNLNLGIGSQ Trigger: TTGACTTCCAATTCCAAGATTTAAATTCAAGTCTCAGACCCAGGTTGGGAAATGCAACTGCCAATAATACTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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| CDS CAA 90 bp | CCATTCAAATTATACTTGAAGGAATCATCAACAATGCAAGTATTATaGGCAGTTGCATTTCCCAACCTGGGTCTGAGACTTGAATTTAAA | + |
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Preference number: 6 (lower is better) Translates to: PFKLYLKESSTMQVL*AVAFPNLGLRLEFK Trigger: TTTAAATTCAAGTCTCAGACCCAGGTTGGGAAATGCAACTGCCAATAATACTTGCATTGTTGATGATTCCTTCAAGTATAATTTGAATGG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000060576.8 |
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