RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LPAR3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036832

Ensembl transcript IDs: ENSMUST00000039164.4

Found 83 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGCCCCAGAAGTGATGCATGGAGCCCTCAAACAACCCTGTCCACGTaGTTTGTGAGACAGGTGAGGACGCTTAACAGCTCTTTCCCCAGG +
Preference number: 1 (lower is better)
Translates to: SPRSDAWSPQTTLST*FVRQVRTLNSSFPR
Trigger: CCTGGGGAAAGAGCTGTTAAGCGTCCTCACCTGTCTCACAAAGCACGTGGACAGGGTTGTTTGAGGGCTCCATGCATCACTTCTGGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR GCA 90 bp AGCTGGAGGATGTTGGGAGCGGATCACAGACAAGCCGGAACCCACTaGTCATCTCTCCCTTTCCTGTGCGCTTTTACTAAACGCCGTAAA +
Preference number: 1 (lower is better)
Translates to: SWRMLGADHRQAGTH*SSLPFLCAFTKRRK
Trigger: TTTACGGCGTTTAGTAAAAGCGCACAGGAAAGGGAGAGATGAGCAGTGGGTTCCGGCTTGTCTGTGATCCGCTCCCAACATCCTCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR CCA 90 bp GACCTAGGACTTTCAACACCATCATTGAAAACACACAGACAATGGTaGCAAGATGGTGACAGAGCCCAGCATGGCTCTCGCAAGAGCTGG +
Preference number: 1 (lower is better)
Translates to: DLGLSTPSLKTHRQW*QDGDRAQHGSRKSW
Trigger: CCAGCTCTTGCGAGAGCCATGCTGGGCTCTGTCACCATCTTGCCACCATTGTCTGTGTGTTTTCAATGATGGTGTTGAAAGTCCTAGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR GCA 90 bp GATCACAGACAAGCCGGAACCCACTGCTCATCTCTCCCTTTCCTGTaGGCTTTTACTAAACGCCGTAAATCTATTTTCCTTGACCATGAA +
Preference number: 1 (lower is better)
Translates to: DHRQAGTHCSSLPFL*AFTKRRKSIFLDHE
Trigger: TTCATGGTCAAGGAAAATAGATTTACGGCGTTTAGTAAAAGCGCACAGGAAAGGGAGAGATGAGCAGTGGGTTCCGGCTTGTCTGTGATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR GCA 90 bp GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACATGTAAACGTTTaGAAGCTACATAAATACCATAGTGCCTGCCTTGAAGTTATTCTT +
Preference number: 1 (lower is better)
Translates to: EREREREREREHVNV*KLHKYHSACLEVIL
Trigger: AAGAATAACTTCAAGGCAGGCACTATGGTATTTATGTAGCTTGCAAACGTTTACATGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR CCA 90 bp ACAAGATCAAAATGCAGTCCACAAGATAGAATACGCTGGCAGCTTTaGTTAAAATACTCGATGTGCAATTACTTTGCACTTGGGATCCAG +
Preference number: 1 (lower is better)
Translates to: TRSKCSPQDRIRWQL*LKYSMCNYFALGIQ
Trigger: CTGGATCCCAAGTGCAAAGTAATTGCACATCGAGTATTTTAACCAAAGCTGCCAGCGTATTCTATCTTGTGGACTGCATTTTGATCTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR TCA 90 bp ACTCTACTATACAGTTGCCCACCTAGCTCCTGGCCATGGCTTCTCTaGGGAAATCAAAGTTCACTGCTAAAATATTTTTCTGAACATTTT +
Preference number: 1 (lower is better)
Translates to: TLLYSCPPSSWPWLL*GNQSSLLKYFSEHF
Trigger: AAAATGTTCAGAAAAATATTTTAGCAGTGAACTTTGATTTCCTCAGAGAAGCCATGGCCAGGAGCTAGGTGGGCAACTGTATAGTAGAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR GCA 90 bp AGAGAACATGTAAACGTTTGCAAGCTACATAAATACCATAGTGCCTaGCTTGAAGTTATTCTTACTTTGTCAGAATACACTCTAAACGTC +
Preference number: 1 (lower is better)
Translates to: REHVNVCKLHKYHSA*LEVILTLSEYTLNV
Trigger: GACGTTTAGAGTGTATTCTGACAAAGTAAGAATAACTTCAAGGCAGGCACTATGGTATTTATGTAGCTTGCAAACGTTTACATGTTCTCT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR-3UTR TCA 90 bp AGAAGTTCAACCTACCGGTCAATATCATCACTTACTCTACTATACAGTTGCCCAATGGTGGCAAGATGGTaGCAGAGCCCAGCATGGCTC +
Preference number: 2 (lower is better)
Translates to: RSSTYRSISSLTLLYSCPMVARW*QSPAWL
Trigger: GAGCCATGCTGGGCTCTGTCACCATCTTGCCACCAT...TGGGCAACTGTATAGTAGAGTAAGTGATGATATTGACCGGTAGGTTGAACTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR CAA 90 bp CATTATTTACTACTTTCTTTTGACCTAGGACTTTCAACACCATCATaGAAAACACACAGACAATGGTGGCAAGATGGTGACAGAGCCCAG +
Preference number: 2 (lower is better)
Translates to: HYLLLSFDLGLSTPS*KTHRQWWQDGDRAQ
Trigger: CTGGGCTCTGTCACCATCTTGCCACCATTGTCTGTGTGTTTTCAATGATGGTGTTGAAAGTCCTAGGTCAAAAGAAAGTAGTAAATAATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR-3UTR GCA 90 bp CATGTAAACGTTTGCAAGCTACATAAATACCATAGTGCCTGCCTTGAAGTTATTTCTCTCCCTTTCCTGTaGGCTTTTACTAAACGCCGT +
Preference number: 2 (lower is better)
Translates to: HVNVCKLHKYHSACLEVISLPFL*AFTKRR
Trigger: ACGGCGTTTAGTAAAAGCGCACAGGAAAGGGAGAGA...AATAACTTCAAGGCAGGCACTATGGTATTTATGTAGCTTGCAAACGTTTACATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR CAA 90 bp AAGCTACATAAATACCATAGTGCCTGCCTTGAAGTTATTCTTACTTaGTCAGAATACACTCTAAACGTCTTACACCGAAAACACTGGTCA +
Preference number: 2 (lower is better)
Translates to: KLHKYHSACLEVILT*SEYTLNVLHRKHWS
Trigger: TGACCAGTGTTTTCGGTGTAAGACGTTTAGAGTGTATTCTGACAAAGTAAGAATAACTTCAAGGCAGGCACTATGGTATTTATGTAGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR-3UTR GCA 90 bp AGAAGTTCAACCTACCGGTCAATATCATCACTTACTCTACTATACAGTTGCCCAAACATTTTAAACCCATaGGGAAACAACTACAGAATC +
Preference number: 2 (lower is better)
Translates to: RSSTYRSISSLTLLYSCPNILNP*GNNYRI
Trigger: GATTCTGTAGTTGTTTCCGCATGGGTTTAAAATGTT...TGGGCAACTGTATAGTAGAGTAAGTGATGATATTGACCGGTAGGTTGAACTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR-3UTR TCA 90 bp CATGTAAACGTTTGCAAGCTACATAAATACCATAGTGCCTGCCTTGAAGTTATTTTTACTACTTTCTTTTaGCCTAGGACTTTCAACACC +
Preference number: 2 (lower is better)
Translates to: HVNVCKLHKYHSACLEVIFTTFF*PRTFNT
Trigger: GGTGTTGAAAGTCCTAGGTCAAAAGAAAGTAGTAAA...AATAACTTCAAGGCAGGCACTATGGTATTTATGTAGCTTGCAAACGTTTACATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR-3UTR TCA 90 bp TATTTGGAAGAAGTTCAACCTACCGGTCAATATCATCACTTACTCTACTATACATTTCAACACCATCATTaGAAACACACAGACAATGGT +
Preference number: 2 (lower is better)
Translates to: YLEEVQPTGQYHHLLYYTFQHHH*KHTDNG
Trigger: ACCATTGTCTGTGTGTTTTCAATGATGGTGTTGAAA...TGTATAGTAGAGTAAGTGATGATATTGACCGGTAGGTTGAACTTCTTCCAAATA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR CCA 72 bp GATGGTGACAGAGCCCAGCATGGCTCTCGCAAGAGCTaGAGGATGTTGGGAGCGGATCACAGACAAGCCGGA +
Preference number: 3 (lower is better)
Translates to: DGDRAQHGSRKS*RMLGADHRQAG
Trigger: TCCGGCTTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGAGAGCCATGCTGGGCTCTGTCACCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR GCA 72 bp AGTGATGCATGGAGCCCTCAAACAACCCTGTCCACGTaGTTTGTGAGACAGGTGAGGACGCTTAACAGCTCT +
Preference number: 3 (lower is better)
Translates to: SDAWSPQTTLST*FVRQVRTLNSS
Trigger: AGAGCTGTTAAGCGTCCTCACCTGTCTCACAAAGCACGTGGACAGGGTTGTTTGAGGGCTCCATGCATCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR TCA 72 bp ATCATTGAAAACACACAGACAATGGTGGCAAGATGGTaGCAGAGCCCAGCATGGCTCTCGCAAGAGCTGGAG +
Preference number: 3 (lower is better)
Translates to: IIENTQTMVARW*QSPAWLSQELE
Trigger: CTCCAGCTCTTGCGAGAGCCATGCTGGGCTCTGTCACCATCTTGCCACCATTGTCTGTGTGTTTTCAATGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR GCA 72 bp ATGTTGGGAGCGGATCACAGACAAGCCGGAACCCACTaGTCATCTCTCCCTTTCCTGTGCGCTTTTACTAAA +
Preference number: 3 (lower is better)
Translates to: MLGADHRQAGTH*SSLPFLCAFTK
Trigger: TTTAGTAAAAGCGCACAGGAAAGGGAGAGATGAGCAGTGGGTTCCGGCTTGTCTGTGATCCGCTCCCAACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR GCA 72 bp GCAGCTTTGGTTAAAATACTCGATGTGCAATTACTTTaGACTTGGGATCCAGCAAGCCCCTCAGCGGTATCC +
Preference number: 3 (lower is better)
Translates to: AALVKILDVQLL*TWDPASPSAVS
Trigger: GGATACCGCTGAGGGGCTTGCTGGATCCCAAGTGCAAAGTAATTGCACATCGAGTATTTTAACCAAAGCTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR GCA 72 bp AGAATACGCTGGCAGCTTTGGTTAAAATACTCGATGTaGAATTACTTTGCACTTGGGATCCAGCAAGCCCCT +
Preference number: 3 (lower is better)
Translates to: RIRWQLWLKYSM*NYFALGIQQAP
Trigger: AGGGGCTTGCTGGATCCCAAGTGCAAAGTAATTGCACATCGAGTATTTTAACCAAAGCTGCCAGCGTATTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR GCA 72 bp AGAGAGAGAGAGAGAGAGAGAGAACATGTAAACGTTTaGAAGCTACATAAATACCATAGTGCCTGCCTTGAA +
Preference number: 3 (lower is better)
Translates to: REREREREHVNV*KLHKYHSACLE
Trigger: TTCAAGGCAGGCACTATGGTATTTATGTAGCTTGCAAACGTTTACATGTTCTCTCTCTCTCTCTCTCTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR CCA 72 bp ACTGAAGATCTAATCGTGCTCATATTTGACGCTATTTaGAAGAAGTTCAACCTACCGGTCAATATCATCACT +
Preference number: 3 (lower is better)
Translates to: TEDLIVLIFDAI*KKFNLPVNIIT
Trigger: AGTGATGATATTGACCGGTAGGTTGAACTTCTTCCAAATAGCGTCAAATATGAGCACGATTAGATCTTCAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR CCA 72 bp AAATGCAGTCCACAAGATAGAATACGCTGGCAGCTTTaGTTAAAATACTCGATGTGCAATTACTTTGCACTT +
Preference number: 3 (lower is better)
Translates to: KCSPQDRIRWQL*LKYSMCNYFAL
Trigger: AAGTGCAAAGTAATTGCACATCGAGTATTTTAACCAAAGCTGCCAGCGTATTCTATCTTGTGGACTGCATTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR CCA 72 bp ACAAGATCAAAATGCAGTCCACAAGATAGAATACGCTaGCAGCTTTGGTTAAAATACTCGATGTGCAATTAC +
Preference number: 3 (lower is better)
Translates to: TRSKCSPQDRIR*QLWLKYSMCNY
Trigger: GTAATTGCACATCGAGTATTTTAACCAAAGCTGCCAGCGTATTCTATCTTGTGGACTGCATTTTGATCTTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR CCA 72 bp TCAGAATACACTCTAAACGTCTTACACCGAAAACACTaGTCAGTAGCCTATGTGTATGAACACTATTTTTGT +
Preference number: 3 (lower is better)
Translates to: SEYTLNVLHRKH*SVAYVYEHYFC
Trigger: ACAAAAATAGTGTTCATACACATAGGCTACTGACCAGTGTTTTCGGTGTAAGACGTTTAGAGTGTATTCTGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR GCA 72 bp GTAAACGTTTGCAAGCTACATAAATACCATAGTGCCTaGCTTGAAGTTATTCTTACTTTGTCAGAATACACT +
Preference number: 3 (lower is better)
Translates to: VNVCKLHKYHSA*LEVILTLSEYT
Trigger: AGTGTATTCTGACAAAGTAAGAATAACTTCAAGGCAGGCACTATGGTATTTATGTAGCTTGCAAACGTTTAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CCA 90 bp CCCAGCATGGCTCTCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGACAAGTCCTGCTGTGGATGGTaGAGGGGTTGCGGGAGGGGC +
Preference number: 4 (lower is better)
Translates to: PSMALARAGGCWERITDKSCCGW*RGCGRG
Trigger: GCCCCTCCCGCAACCCCTCCACCATCCACAGCAGGA...CTTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGAGAGCCATGCTGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CCA 90 bp TCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGACAAGCCGGAACCCACTGCGCTCCTGCTGTGGATaGTGGAGGGGTTGCGGGAGG +
Preference number: 4 (lower is better)
Translates to: SQELEDVGSGSQTSRNPLRSCCG*WRGCGR
Trigger: CCTCCCGCAACCCCTCCACCATCCACAGCAGGAGCG...CAGTGGGTTCCGGCTTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR TCA 90 bp TTTGTGAGACAGGTGAGGACGCTTAACAGCTCTTTCCCCAGGGGAAGAGGGCGGACACCGGGCCCTGGCTaGTGCTGTCCTCCAGGTACT +
Preference number: 4 (lower is better)
Translates to: FVRQVRTLNSSFPRGRGRTPGPG*CCPPGT
Trigger: AGTACCTGGAGGACAGCATCAGCCAGGGCCCGGTGT...CCGCCCTCTTCCCCTGGGGAAAGAGCTGTTAAGCGTCCTCACCTGTCTCACAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR TCA 90 bp CAGAGCCCAGCATGGCTCTCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGGGAGGAACCAGCGGTTaGCGGTCAACGTTTTCGACA +
Preference number: 4 (lower is better)
Translates to: QSPAWLSQELEDVGSGSQGGTSG*RSTFST
Trigger: TGTCGAAAACGTTGACCGTCAACCGCTGGTTCCTCC...CTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGAGAGCCATGCTGGGCTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR TCA 90 bp TCTCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGACAAGCCGGAACCCACCCCACACCAGCAGAATaGGCAGCGTCACCCGCTTTT +
Preference number: 4 (lower is better)
Translates to: SRKSWRMLGADHRQAGTHPTPAE*AASPAF
Trigger: AAAAGCGGGTGACGCTGCTCATTCTGCTGGTGTGGG...GTGGGTTCCGGCTTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR GCA 90 bp TCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGACAAGCCGGAACCCACTGGCACGTTACACTGCTTaGAGTTCAGGCCGTCCAGCA +
Preference number: 4 (lower is better)
Translates to: SQELEDVGSGSQTSRNPLARYTA*SSGRPA
Trigger: TGCTGGACGGCCTGAACTGCAAGCAGTGTAACGTGC...CAGTGGGTTCCGGCTTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR GCA 90 bp TCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGACAAGCCGGAACCCACTGTGTTGCACGTTACACTaGTTGCAGTTCAGGCCGTCC +
Preference number: 4 (lower is better)
Translates to: SQELEDVGSGSQTSRNPLCCTLH*LQFRPS
Trigger: GGACGGCCTGAACTGCAAGCAGTGTAACGTGCAACA...CAGTGGGTTCCGGCTTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR GCA 90 bp CCCAGCATGGCTCTCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGACAAGTCGGTATTGCTGTCCTaGAGGGCACAGCAGATCATC +
Preference number: 4 (lower is better)
Translates to: PSMALARAGGCWERITDKSVLLS*RAQQII
Trigger: GATGATCTGCTGTGCCCTGCAGGACAGCAATACCGA...CTTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGAGAGCCATGCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CCA 90 bp CAAACAACCCTGTCCACGTGCTTTGTGAGACAGGTGAGGACGCTTAACAGCTCTTTGCACACCGGGCCCTaGCTGATGCTGTCCTCCAGG +
Preference number: 4 (lower is better)
Translates to: QTTLSTCFVRQVRTLNSSLHTGP*LMLSSR
Trigger: CCTGGAGGACAGCATCAGCCAGGGCCCGGTGTGCAA...AGAGCTGTTAAGCGTCCTCACCTGTCTCACAAAGCACGTGGACAGGGTTGTTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR GCA 90 bp TTTGTGAGACAGGTGAGGACGCTTAACAGCTCTTTCCCCAGGGGAAGAGGGCGGAGCAGGCCGAGATGTTaGAGAGGCAATTCCATCCCA +
Preference number: 4 (lower is better)
Translates to: FVRQVRTLNSSFPRGRGRSRPRC*RGNSIP
Trigger: TGGGATGGAATTGCCTCTGCAACATCTCGGCCTGCT...CCGCCCTCTTCCCCTGGGGAAAGAGCTGTTAAGCGTCCTCACCTGTCTCACAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR TCA 90 bp TCAACACCATCATTGAAAACACACAGACAATGGTGGCAAGATGGTGACAGAGCCTGGGGACGGCCCCCATaGAGATGGCGATGGCCCACA +
Preference number: 4 (lower is better)
Translates to: STPSLKTHRQWWQDGDRAWGRPP*RWRWPT
Trigger: TGTGGGCCATCGCCATCTTCATGGGGGCCGTCCCCA...GGCTCTGTCACCATCTTGCCACCATTGTCTGTGTGTTTTCAATGATGGTGTTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR TCA 90 bp TTTGTGAGACAGGTGAGGACGCTTAACAGCTCTTTCCCCAGGGGAAGAGGGCGGGGACTCTCATCCTCATaGTGGACATGTGTCTTTCCA +
Preference number: 4 (lower is better)
Translates to: FVRQVRTLNSSFPRGRGRGLSSS*WTCVFP
Trigger: TGGAAAGACACATGTCCATCATGAGGATGAGAGTCC...CCGCCCTCTTCCCCTGGGGAAAGAGCTGTTAAGCGTCCTCACCTGTCTCACAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR GCA 90 bp CCCAGCATGGCTCTCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGACAAGGCTTTTTGGTCAAGTTaGTGTGGACTCTCATCCTCA +
Preference number: 4 (lower is better)
Translates to: PSMALARAGGCWERITDKAFWSS*CGLSSS
Trigger: TGAGGATGAGAGTCCACAGCAACTTGACCAAAAAGC...CTTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGAGAGCCATGCTGGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CCA 90 bp GCCCAGCATGGCTCTCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGACAATTGGTCAAGTTGCTGTaGACTCTCATCCTCATGATG +
Preference number: 4 (lower is better)
Translates to: AQHGSRKSWRMLGADHRQLVKLL*TLILMM
Trigger: CATCATGAGGATGAGAGTCCACAGCAACTTGACCAA...TTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGAGAGCCATGCTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CCA 90 bp GGGAGCGGATCACAGACAAGCCGGAACCCACTGCTCATCTCTCCCTTTCCTGTGAGATCATCTTCCGCATaGTGTTGTACATGTCCTCGT +
Preference number: 4 (lower is better)
Translates to: GSGSQTSRNPLLISPFPVRSSSA*CCTCPR
Trigger: ACGAGGACATGTACAACACCATGCGGAAGATGATCT...CACAGGAAAGGGAGAGATGAGCAGTGGGTTCCGGCTTGTCTGTGATCCGCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR GCA 90 bp TCAACACCATCATTGAAAACACACAGACAATGGTGGCAAGATGGTGACAGAGCCGACGGAGTTGAGCAGTaGGAGCAGCAGGAACCAGCG +
Preference number: 4 (lower is better)
Translates to: STPSLKTHRQWWQDGDRADGVEQ*EQQEPA
Trigger: CGCTGGTTCCTGCTGCTCGCACTGCTCAACTCCGTC...GGCTCTGTCACCATCTTGCCACCATTGTCTGTGTGTTTTCAATGATGGTGTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR TCA 90 bp CCCAGCATGGCTCTCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGACAAGACACAGTCCAGAAAATaGGGTAACTCCTACTGTAAA +
Preference number: 4 (lower is better)
Translates to: PSMALARAGGCWERITDKTQSRK*GNSYCK
Trigger: TTTACAGTAGGAGTTACCTCATTTTCTGGACTGTGT...CTTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGAGAGCCATGCTGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR GCA 90 bp GCCCAGCATGGCTCTCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGACAATGTAGAAAAAGTCCATaGGCTTGTCATAGTGACACT +
Preference number: 4 (lower is better)
Translates to: AQHGSRKSWRMLGADHRQCRKSP*ACHSDT
Trigger: AGTGTCACTATGACAAGCGCATGGACTTTTTCTACA...TTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGAGAGCCATGCTGGGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CCA 90 bp AGAAGTTCAACCTACCGGTCAATATCATCACTTACTCTACTATACAGTTGCCCAGTCTCGCTCCTGCTGTaGATGGTGGAGGGGTTGCGG +
Preference number: 4 (lower is better)
Translates to: RSSTYRSISSLTLLYSCPVSLLL*MVEGLR
Trigger: CCGCAACCCCTCCACCATCCACAGCAGGAGCGAGAC...TGGGCAACTGTATAGTAGAGTAAGTGATGATATTGACCGGTAGGTTGAACTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CCA 90 bp TCAACACCATCATTGAAAACACACAGACAATGGTGGCAAGATGGTGACAGAGCCAACTCCTACTGTAAATaGGAGCCAGAGAAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: STPSLKTHRQWWQDGDRANSYCK*EPEKSR
Trigger: CCTGCTCTTCTCTGGCTCCCATTTACAGTAGGAGTT...GGCTCTGTCACCATCTTGCCACCATTGTCTGTGTGTTTTCAATGATGGTGTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
3UTR CAA 72 bp AAATACCATAGTGCCTGCCTTGAAGTTATTCTTACTTaGTCAGAATACACTCTAAACGTCTTACACCGAAAA +
Preference number: 4 (lower is better)
Translates to: KYHSACLEVILT*SEYTLNVLHRK
Trigger: TTTTCGGTGTAAGACGTTTAGAGTGTATTCTGACAAAGTAAGAATAACTTCAAGGCAGGCACTATGGTATTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CCA 90 bp TGTCCTCCAGGTACTGGCTGCCCGTCTCGCTCCTGCTGTGGATGGTaGAGGGGTTGCGGGAGGGGCGCCTCTCGGTATTGCTGTCCTGCA +
Preference number: 5 (lower is better)
Translates to: CPPGTGCPSRSCCGW*RGCGRGASRYCCPA
Trigger: TGCAGGACAGCAATACCGAGAGGCGCCCCTCCCGCAACCCCTCCACCATCCACAGCAGGAGCGAGACGGGCAGCCAGTACCTGGAGGACA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CCA 90 bp CTGATGCTGTCCTCCAGGTACTGGCTGCCCGTCTCGCTCCTGCTGTaGATGGTGGAGGGGTTGCGGGAGGGGCGCCTCTCGGTATTGCTG +
Preference number: 5 (lower is better)
Translates to: LMLSSRYWLPVSLLL*MVEGLREGRLSVLL
Trigger: CAGCAATACCGAGAGGCGCCCCTCCCGCAACCCCTCCACCATCCACAGCAGGAGCGAGACGGGCAGCCAGTACCTGGAGGACAGCATCAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS GCA 90 bp CGAGCAGCAGGAACCAGCGCTTCACGTGTTGCACGTTACACTGCTTaGAGTTCAGGCCGTCCAGCAGCAGAACCACCAGACCCGGGGTCC +
Preference number: 5 (lower is better)
Translates to: RAAGTSASRVARYTA*SSGRPAAEPPDPGS
Trigger: GGACCCCGGGTCTGGTGGTTCTGCTGCTGGACGGCCTGAACTGCAAGCAGTGTAACGTGCAACACGTGAAGCGCTGGTTCCTGCTGCTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS GCA 90 bp AGTGCGAGCAGCAGGAACCAGCGCTTCACGTGTTGCACGTTACACTaGTTGCAGTTCAGGCCGTCCAGCAGCAGAACCACCAGACCCGGG +
Preference number: 5 (lower is better)
Translates to: SASSRNQRFTCCTLH*LQFRPSSSRTTRPG
Trigger: CCCGGGTCTGGTGGTTCTGCTGCTGGACGGCCTGAACTGCAAGCAGTGTAACGTGCAACACGTGAAGCGCTGGTTCCTGCTGCTCGCACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS GCA 90 bp ATGGTGGAGGGGTTGCGGGAGGGGCGCCTCTCGGTATTGCTGTCCTaGAGGGCACAGCAGATCATCTTCCGCATGGTGTTGTACATGTCC +
Preference number: 5 (lower is better)
Translates to: MVEGLREGRLSVLLS*RAQQIIFRMVLYMS
Trigger: GGACATGTACAACACCATGCGGAAGATGATCTGCTGTGCCCTGCAGGACAGCAATACCGAGAGGCGCCCCTCCCGCAACCCCTCCACCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CAA 90 bp CAGAGCCCAGCATGGCTCTCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGTGCACGTTACACTGCTaGCAGTTCAGGCCGTCCAGC +
Preference number: 5 (lower is better)
Translates to: QSPAWLSQELEDVGSGSQCTLHC*QFRPSS
Trigger: GCTGGACGGCCTGAACTGCAAGCAGTGTAACGTGCA...CTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGAGAGCCATGCTGGGCTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS GCA 90 bp ACGGAGTTGAGCAGTGCGAGCAGCAGGAACCAGCGCTTCACGTGTTaGACGTTACACTGCTTGCAGTTCAGGCCGTCCAGCAGCAGAACC +
Preference number: 5 (lower is better)
Translates to: TELSSASSRNQRFTC*TLHCLQFRPSSSRT
Trigger: GGTTCTGCTGCTGGACGGCCTGAACTGCAAGCAGTGTAACGTGCAACACGTGAAGCGCTGGTTCCTGCTGCTCGCACTGCTCAACTCCGT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CAA 90 bp CCCAGCATGGCTCTCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGACAAGGGACGATCACAAGCTTaGTCCCTGTCCACTCGTCCG +
Preference number: 5 (lower is better)
Translates to: PSMALARAGGCWERITDKGRSQA*SLSTRP
Trigger: CGGACGAGTGGACAGGGACAAAGCTTGTGATCGTCC...CTTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGAGAGCCATGCTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CAA 90 bp GCCCAGCATGGCTCTCGCAAGAGCTGGAGGATGTTGGGAGCGGATCACAGACAAGAGCAGGCCGAGATGTaGCAGAGGCAATTCCATCCC +
Preference number: 5 (lower is better)
Translates to: AQHGSRKSWRMLGADHRQEQAEM*QRQFHP
Trigger: GGGATGGAATTGCCTCTGCAACATCTCGGCCTGCTC...TTGTCTGTGATCCGCTCCCAACATCCTCCAGCTCTTGCGAGAGCCATGCTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS TCA 90 bp CGGTCATCACTGTCTTCATTAGCTTCATGGGAGCCCTCCGGCGGCTaGTGGAGCCACTGGTGTGTGGAGATAAGACGTTGGTTTTCCTTT +
Preference number: 5 (lower is better)
Translates to: RSSLSSLASWEPSGG*WSHWCVEIRRWFSF
Trigger: AAAGGAAAACCAACGTCTTATCTCCACACACCAGTGGCTCCATCAGCCGCCGGAGGGCTCCCATGAAGCTAATGAAGACAGTGATGACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS GCA 90 bp CGATCACAAGCTTTGTCCCTGTCCACTCGTCCGCTGTGTCTGTGTTaGTCCTGTTGTAGAAAAAGTCCATGCGCTTGTCATAGTGACACT +
Preference number: 5 (lower is better)
Translates to: RSQALSLSTRPLCLC*SCCRKSPCACHSDT
Trigger: AGTGTCACTATGACAAGCGCATGGACTTTTTCTACAACAGGAGCAACACAGACACAGCGGACGAGTGGACAGGGACAAAGCTTGTGATCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CAA 90 bp TCAACACCATCATTGAAAACACACAGACAATGGTGGCAAGATGGTGACAGAGCCGCAATAACCAGCAAATaGGCCAGGGAGGCAGTCAGG +
Preference number: 5 (lower is better)
Translates to: STPSLKTHRQWWQDGDRAAITSK*AREAVR
Trigger: CCTGACTGCCTCCCTGGCCAATTTGCTGGTTATTGC...GGCTCTGTCACCATCTTGCCACCATTGTCTGTGTGTTTTCAATGATGGTGTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CCA 90 bp ACCAGCAGAATGAGCAGCGTCACCCGCTTTTTGGTCAAGTTGCTGTaGACTCTCATCCTCATGATGGACATGTGTCTTTCCACAGCAATA +
Preference number: 5 (lower is better)
Translates to: TSRMSSVTRFLVKLL*TLILMMDMCLSTAI
Trigger: TATTGCTGTGGAAAGACACATGTCCATCATGAGGATGAGAGTCCACAGCAACTTGACCAAAAAGCGGGTGACGCTGCTCATTCTGCTGGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CAA 90 bp GGTAGCTTTCACATAAGCTTTGCGTACACCTACCTACTGCATCAAGCATGTAAAAAGAAGGCCAGGAGGTaGGACACAGTCCAGAAAATG +
Preference number: 5 (lower is better)
Translates to: GSFHISFAYTYLLHQACKKKARR*DTVQKM
Trigger: CATTTTCTGGACTGTGTCCAACCTCCTGGCCTTCTT...TTTACATGCTTGATGCAGTAGGTAGGTGTACGCAAAGCTTATGTGAAAGCTACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CAA 90 bp AGAAGTTCAACCTACCGGTCAATATCATCACTTACTCTACTATACAGTTGCCCACGCTTTTTGGTCAAGTaGCTGTGGACTCTCATCCTC +
Preference number: 5 (lower is better)
Translates to: RSSTYRSISSLTLLYSCPRFLVK*LWTLIL
Trigger: GAGGATGAGAGTCCACAGCAACTTGACCAAAAAGCG...TGGGCAACTGTATAGTAGAGTAAGTGATGATATTGACCGGTAGGTTGAACTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CAA 90 bp TCAACACCATCATTGAAAACACACAGACAATGGTGGCAAGATGGTGACAGAGCCTGTGGAGATAAGACGTaGGTTTTCCTTTTAACATAC +
Preference number: 5 (lower is better)
Translates to: STPSLKTHRQWWQDGDRACGDKT*VFLLTY
Trigger: GTATGTTAAAAGGAAAACCAACGTCTTATCTCCACA...GGCTCTGTCACCATCTTGCCACCATTGTCTGTGTGTTTTCAATGATGGTGTTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS-3UTR CAA 90 bp TATTTGGAAGAAGTTCAACCTACCGGTCAATATCATCACTTACTCTACTATACAATCTTCCGCATGGTGTaGTACATGTCCTCGTCCTTG +
Preference number: 5 (lower is better)
Translates to: YLEEVQPTGQYHHLLYYTIFRMV*YMSSSL
Trigger: CAAGGACGAGGACATGTACAACACCATGCGGAAGAT...TGTATAGTAGAGTAAGTGATGATATTGACCGGTAGGTTGAACTTCTTCCAAATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CAA 72 bp CTGCCCGTCTCGCTCCTGCTGTGGATGGTGGAGGGGTaGCGGGAGGGGCGCCTCTCGGTATTGCTGTCCTGC +
Preference number: 6 (lower is better)
Translates to: LPVSLLLWMVEG*REGRLSVLLSC
Trigger: GCAGGACAGCAATACCGAGAGGCGCCCCTCCCGCAACCCCTCCACCATCCACAGCAGGAGCGAGACGGGCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CAA 90 bp AGGTACTGGCTGCCCGTCTCGCTCCTGCTGTGGATGGTGGAGGGGTaGCGGGAGGGGCGCCTCTCGGTATTGCTGTCCTGCAGGGCACAG +
Preference number: 6 (lower is better)
Translates to: RYWLPVSLLLWMVEG*REGRLSVLLSCRAQ
Trigger: CTGTGCCCTGCAGGACAGCAATACCGAGAGGCGCCCCTCCCGCAACCCCTCCACCATCCACAGCAGGAGCGAGACGGGCAGCCAGTACCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CAA 90 bp GCGAGCAGCAGGAACCAGCGCTTCACGTGTTGCACGTTACACTGCTaGCAGTTCAGGCCGTCCAGCAGCAGAACCACCAGACCCGGGGTC +
Preference number: 6 (lower is better)
Translates to: ASSRNQRFTCCTLHC*QFRPSSSRTTRPGV
Trigger: GACCCCGGGTCTGGTGGTTCTGCTGCTGGACGGCCTGAACTGCAAGCAGTGTAACGTGCAACACGTGAAGCGCTGGTTCCTGCTGCTCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS GCA 72 bp GGGTTGCGGGAGGGGCGCCTCTCGGTATTGCTGTCCTaGAGGGCACAGCAGATCATCTTCCGCATGGTGTTG +
Preference number: 6 (lower is better)
Translates to: GLREGRLSVLLS*RAQQIIFRMVL
Trigger: CAACACCATGCGGAAGATGATCTGCTGTGCCCTGCAGGACAGCAATACCGAGAGGCGCCCCTCCCGCAACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS GCA 72 bp AGCAGTGCGAGCAGCAGGAACCAGCGCTTCACGTGTTaGACGTTACACTGCTTGCAGTTCAGGCCGTCCAGC +
Preference number: 6 (lower is better)
Translates to: SSASSRNQRFTC*TLHCLQFRPSS
Trigger: GCTGGACGGCCTGAACTGCAAGCAGTGTAACGTGCAACACGTGAAGCGCTGGTTCCTGCTGCTCGCACTGCT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CAA 72 bp GAGCAGTGCGAGCAGCAGGAACCAGCGCTTCACGTGTaGCACGTTACACTGCTTGCAGTTCAGGCCGTCCAG +
Preference number: 6 (lower is better)
Translates to: EQCEQQEPALHV*HVTLLAVQAVQ
Trigger: CTGGACGGCCTGAACTGCAAGCAGTGTAACGTGCAACACGTGAAGCGCTGGTTCCTGCTGCTCGCACTGCTC
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CAA 90 bp GACGGAGTTGAGCAGTGCGAGCAGCAGGAACCAGCGCTTCACGTGTaGCACGTTACACTGCTTGCAGTTCAGGCCGTCCAGCAGCAGAAC +
Preference number: 6 (lower is better)
Translates to: DGVEQCEQQEPALHV*HVTLLAVQAVQQQN
Trigger: GTTCTGCTGCTGGACGGCCTGAACTGCAAGCAGTGTAACGTGCAACACGTGAAGCGCTGGTTCCTGCTGCTCGCACTGCTCAACTCCGTC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS GCA 72 bp AGCAGGAACCAGCGCTTCACGTGTTGCACGTTACACTaGTTGCAGTTCAGGCCGTCCAGCAGCAGAACCACC +
Preference number: 6 (lower is better)
Translates to: SRNQRFTCCTLH*LQFRPSSSRTT
Trigger: GGTGGTTCTGCTGCTGGACGGCCTGAACTGCAAGCAGTGTAACGTGCAACACGTGAAGCGCTGGTTCCTGCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS TCA 72 bp CTGTCTTCATTAGCTTCATGGGAGCCCTCCGGCGGCTaGTGGAGCCACTGGTGTGTGGAGATAAGACGTTGG +
Preference number: 6 (lower is better)
Translates to: LSSLASWEPSGG*WSHWCVEIRRW
Trigger: CCAACGTCTTATCTCCACACACCAGTGGCTCCATCAGCCGCCGGAGGGCTCCCATGAAGCTAATGAAGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CAA 72 bp AGAAGAACGTCCCCACGCACAGGACGATCACAAGCTTaGTCCCTGTCCACTCGTCCGCTGTGTCTGTGTTGC +
Preference number: 6 (lower is better)
Translates to: RRTSPRTGRSQA*SLSTRPLCLCC
Trigger: GCAACACAGACACAGCGGACGAGTGGACAGGGACAAAGCTTGTGATCGTCCTGTGCGTGGGGACGTTCTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CAA 72 bp AGGAACCAGCGCTTCACGTGTTGCACGTTACACTGCTaGCAGTTCAGGCCGTCCAGCAGCAGAACCACCAGA +
Preference number: 6 (lower is better)
Translates to: RNQRFTCCTLHC*QFRPSSSRTTR
Trigger: TCTGGTGGTTCTGCTGCTGGACGGCCTGAACTGCAAGCAGTGTAACGTGCAACACGTGAAGCGCTGGTTCCT
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CAA 72 bp GCCCACACCAGCAGAATGAGCAGCGTCACCCGCTTTTaGGTCAAGTTGCTGTGGACTCTCATCCTCATGATG +
Preference number: 6 (lower is better)
Translates to: AHTSRMSSVTRF*VKLLWTLILMM
Trigger: CATCATGAGGATGAGAGTCCACAGCAACTTGACCAAAAAGCGGGTGACGCTGCTCATTCTGCTGGTGTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CAA 90 bp ATGGCGATGGCCCACACCAGCAGAATGAGCAGCGTCACCCGCTTTTaGGTCAAGTTGCTGTGGACTCTCATCCTCATGATGGACATGTGT +
Preference number: 6 (lower is better)
Translates to: MAMAHTSRMSSVTRF*VKLLWTLILMMDMC
Trigger: ACACATGTCCATCATGAGGATGAGAGTCCACAGCAACTTGACCAAAAAGCGGGTGACGCTGCTCATTCTGCTGGTGTGGGCCATCGCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CCA 72 bp TGCTGTCCTGCAGGGCACAGCAGATCATCTTCCGCATaGTGTTGTACATGTCCTCGTCCTTGTACGAGTAGA +
Preference number: 6 (lower is better)
Translates to: CCPAGHSRSSSA*CCTCPRPCTSR
Trigger: TCTACTCGTACAAGGACGAGGACATGTACAACACCATGCGGAAGATGATCTGCTGTGCCCTGCAGGACAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CAA 90 bp GCCCACACCAGCAGAATGAGCAGCGTCACCCGCTTTTTGGTCAAGTaGCTGTGGACTCTCATCCTCATGATGGACATGTGTCTTTCCACA +
Preference number: 6 (lower is better)
Translates to: AHTSRMSSVTRFLVK*LWTLILMMDMCLST
Trigger: TGTGGAAAGACACATGTCCATCATGAGGATGAGAGTCCACAGCAACTTGACCAAAAAGCGGGTGACGCTGCTCATTCTGCTGGTGTGGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS GCA 72 bp GCTTTGTCCCTGTCCACTCGTCCGCTGTGTCTGTGTTaGTCCTGTTGTAGAAAAAGTCCATGCGCTTGTCAT +
Preference number: 6 (lower is better)
Translates to: ALSLSTRPLCLC*SCCRKSPCACH
Trigger: ATGACAAGCGCATGGACTTTTTCTACAACAGGAGCAACACAGACACAGCGGACGAGTGGACAGGGACAAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CCA 72 bp ATGAGCAGCGTCACCCGCTTTTTGGTCAAGTTGCTGTaGACTCTCATCCTCATGATGGACATGTGTCTTTCC +
Preference number: 6 (lower is better)
Translates to: MSSVTRFLVKLL*TLILMMDMCLS
Trigger: GGAAAGACACATGTCCATCATGAGGATGAGAGTCCACAGCAACTTGACCAAAAAGCGGGTGACGCTGCTCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4
CDS CAA 72 bp AGCAGAATGAGCAGCGTCACCCGCTTTTTGGTCAAGTaGCTGTGGACTCTCATCCTCATGATGGACATGTGT +
Preference number: 6 (lower is better)
Translates to: SRMSSVTRFLVK*LWTLILMMDMC
Trigger: ACACATGTCCATCATGAGGATGAGAGTCCACAGCAACTTGACCAAAAAGCGGGTGACGCTGCTCATTCTGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000039164.4