Pregenerated sensors for LOX (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024529Ensembl transcript IDs: ENSMUST00000025409.9, ENSMUST00000171470.8
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTTCACAGTTTTACGTAAGGTCACAGCGGTCTCGTTGTGGTGCGTaGTCCTTGGTTTTTGCAGGAAGGCTCTGCTTCCCTCTTGTTCGC | + |
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Preference number: 1 (lower is better) Translates to: VSQFYVRSQRSRCGA*SLVFAGRLCFPLVR Trigger: GCGAACAAGAGGGAAGCAGAGCCTTCCTGCAAAAACCAAGGAGCACGCACCACAACGAGACCGCTGTGACCTTACGTAAAACTGTGAAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR CCA 90 bp | CTGTTGGTCATCGGAATGATTTCCCTATGCCGTGAAACCTCACAATaGGGATGTGCTGATTGTCACATTAGACATTTCTGCCCACAGAAA | + |
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Preference number: 1 (lower is better) Translates to: LLVIGMISLCRETSQ*GCADCHIRHFCPQK Trigger: TTTCTGTGGGCAGAAATGTCTAATGTGACAATCAGCACATCCCCATTGTGAGGTTTCACGGCATAGGGAAATCATTCCGATGACCAACAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR CCA 90 bp | GAAATGCTAGCTAGGGCAAAGAGGTACATCGAAGAAGCAATCCTGTaGATCAGAAACCAGCTCAATCAGAGTTCTGCCTGCATTTGCTTA | + |
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Preference number: 1 (lower is better) Translates to: EMLARAKRYIEEAIL*IRNQLNQSSACICL Trigger: TAAGCAAATGCAGGCAGAACTCTGATTGAGCTGGTTTCTGATCCACAGGATTGCTTCTTCGATGTACCTCTTTGCCCTAGCTAGCATTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR TCA 90 bp | CTGCTGAAGACTAATGATCAATGGGGAGAGAATGAACACAGGGAATaGTGTCCACACGTGTCTAACATCAATATTTTAAAGAGCACCACA | + |
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Preference number: 1 (lower is better) Translates to: LLKTNDQWGENEHRE*CPHVSNINILKSTT Trigger: TGTGGTGCTCTTTAAAATATTGATGTTAGACACGTGTGGACATCATTCCCTGTGTTCATTCTCTCCCCATTGATCATTAGTCTTCAGCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR GCA 90 bp | CACCAAATGACATGTCCCCTACTACACAGCAAGCAGTCATATATTAAATGTGTGTCCACCCCTGGCGACTaGCCATCTCTGGCCCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: HQMTCPLLHSKQSYIKCVSTPGD*PSLAPP Trigger: GGGAGGGGCCAGAGATGGGCAGTCGCCAGGGGTGGA...CACACATTTAATATATGACTGCTTGCTGTGTAGTAGGGGACATGTCATTTGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR CCA 90 bp | CTTTCTGCACCTTCTGAATGTAAGAGTCTCCAAATCCCACTGCTACACACAGTTACAGCGGTCTCGTTGTaGTGCGTGCTCCTTGGTTTT | + |
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Preference number: 2 (lower is better) Translates to: LSAPSECKSLQIPLLHTVTAVSL*CVLLGF Trigger: AAAACCAAGGAGCACGCACCACAACGAGACCGCTGT...AACTGTGTGTAGCAGTGGGATTTGGAGACTCTTACATTCAGAAGGTGCAGAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR CCA 90 bp | GATACCCAAAGGTCAAAAATACAAAGTGGTAAGTCAGGATTTAAAGTCAATTGGGCGACTGCCCATCTCTaGCCCCTCCCACTTGCTCTG | + |
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Preference number: 2 (lower is better) Translates to: DTQRSKIQSGKSGFKVNWATAHL*PLPLAL Trigger: CAGAGCAAGTGGGAGGGGCCAGAGATGGGCAGTCGC...CCAATTGACTTTAAATCCTGACTTACCACTTTGTATTTTTGACCTTTGGGTATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR TCA 90 bp | CTTTCTGCACCTTCTGAATGTAAGAGTCTCCAAATCCCACTGCTACACACAGTTCTGAAGAGTCTAAGATaGTGGTGCTGCATTGCACAC | + |
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Preference number: 2 (lower is better) Translates to: LSAPSECKSLQIPLLHTVLKSLR*WCCIAH Trigger: GTGTGCAATGCAGCACCATCATCTTAGACTCTTCAG...AACTGTGTGTAGCAGTGGGATTTGGAGACTCTTACATTCAGAAGGTGCAGAAAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR GCA 90 bp | GATACCCAAAGGTCAAAAATACAAAGTGGTAAGTCAGGATTTAAAGTCAATTGGCTGGCCCCTCCCACTTaGTCTGCAGCAATGAGTCTA | + |
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Preference number: 2 (lower is better) Translates to: DTQRSKIQSGKSGFKVNWLAPPT*SAAMSL Trigger: TAGACTCATTGCTGCAGAGCAAGTGGGAGGGGCCAG...CCAATTGACTTTAAATCCTGACTTACCACTTTGTATTTTTGACCTTTGGGTATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR CCA 90 bp | AATTTGAAAGGATCGTTCTACAGTATCAAAACTGAAATGCTAGCTAGGGCAAAGACAGCGGTCTCGTTGTaGTGCGTGCTCCTTGGTTTT | + |
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Preference number: 2 (lower is better) Translates to: NLKGSFYSIKTEMLARAKTAVSL*CVLLGF Trigger: AAAACCAAGGAGCACGCACCACAACGAGACCGCTGT...CTTTGCCCTAGCTAGCATTTCAGTTTTGATACTGTAGAACGATCCTTTCAAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR TCA 90 bp | CTTTCTGCACCTTCTGAATGTAAGAGTCTCCAAATCCCACTGCTACACACAGTTATGCACCCACAGAATTaGAACACTGCTAATTCACAA | + |
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Preference number: 2 (lower is better) Translates to: LSAPSECKSLQIPLLHTVMHPQN*NTANSQ Trigger: TTGTGAATTAGCAGTGTTTCAATTCTGTGGGTGCAT...AACTGTGTGTAGCAGTGGGATTTGGAGACTCTTACATTCAGAAGGTGCAGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR TCA 90 bp | AATTTGAAAGGATCGTTCTACAGTATCAAAACTGAAATGCTAGCTAGGGCAAAGATGTTAGCTCTCCACTaGTCACAGCTGTTGGTCATC | + |
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Preference number: 2 (lower is better) Translates to: NLKGSFYSIKTEMLARAKMLALH*SQLLVI Trigger: GATGACCAACAGCTGTGATCAGTGGAGAGCTAACAT...CTTTGCCCTAGCTAGCATTTCAGTTTTGATACTGTAGAACGATCCTTTCAAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR TCA 90 bp | AATTTGAAAGGATCGTTCTACAGTATCAAAACTGAAATGCTAGCTAGGGCAAAGCTGAAGAGTCTAAGATaGTGGTGCTGCATTGCACAC | + |
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Preference number: 2 (lower is better) Translates to: NLKGSFYSIKTEMLARAKLKSLR*WCCIAH Trigger: GTGTGCAATGCAGCACCATCATCTTAGACTCTTCAG...CTTTGCCCTAGCTAGCATTTCAGTTTTGATACTGTAGAACGATCCTTTCAAATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR TCA 90 bp | CACCAAATGACATGTCCCCTACTACACAGCAAGCAGTCATATATTAAATGTGTGTTTAACGCTGGTAAATaGAGTACGACTTCGGCACAA | + |
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Preference number: 2 (lower is better) Translates to: HQMTCPLLHSKQSYIKCVFNAGK*STTSAQ Trigger: TTGTGCCGAAGTCGTACTTCATTTACCAGCGTTAAA...CACACATTTAATATATGACTGCTTGCTGTGTAGTAGGGGACATGTCATTTGGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR TCA 90 bp | TCGCCAACCTCTCAAGTATACAATGCTATGTGCTTCGCTAATTTGGGTTGTATTATGCACCCACAGAATTaGAACACTGCTAATTCACAA | + |
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Preference number: 2 (lower is better) Translates to: SPTSQVYNAMCFANLGCIMHPQN*NTANSQ Trigger: TTGTGAATTAGCAGTGTTTCAATTCTGTGGGTGCAT...AATACAACCCAAATTAGCGAAGCACATAGCATTGTATACTTGAGAGGTTGGCGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR CCA 90 bp | GATACCCAAAGGTCAAAAATACAAAGTGGTAAGTCAGGATTTAAAGTCAATTGGGCCTGCATTTGCTTATaGGTAAGTGTGCTTTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: DTQRSKIQSGKSGFKVNWACICL*VSVLSG Trigger: GCCTGAAAGCACACTTACCCATAAGCAAATGCAGGC...CCAATTGACTTTAAATCCTGACTTACCACTTTGTATTTTTGACCTTTGGGTATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR TCA 90 bp | CGCCAACCTCTCAAGTATACAATGCTATGTGCTTCGCTAATTTGGGTTGTATTTAGGGATGTAACTATCTaGATACATATATCGCCATCT | + |
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Preference number: 2 (lower is better) Translates to: RQPLKYTMLCASLIWVVFRDVTI*IHISPS Trigger: AGATGGCGATATATGTATTCAGATAGTTACATCCCT...AAATACAACCCAAATTAGCGAAGCACATAGCATTGTATACTTGAGAGGTTGGCG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR TCA 90 bp | TCGCCAACCTCTCAAGTATACAATGCTATGTGCTTCGCTAATTTGGGTTGTATTAGGGATGTAACTATCTaGATACATATATCGCCATCT | + |
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Preference number: 2 (lower is better) Translates to: SPTSQVYNAMCFANLGCIRDVTI*IHISPS Trigger: AGATGGCGATATATGTATTCAGATAGTTACATCCCT...AATACAACCCAAATTAGCGAAGCACATAGCATTGTATACTTGAGAGGTTGGCGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR GCA 72 bp | AGAATTATGTGTACCGCGCTATCCACCCCTGGCGACTaGCCATCTCTGGCCCCTCCCACTTGCTCTGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: RIMCTALSTPGD*PSLAPPTCSAA Trigger: TGCTGCAGAGCAAGTGGGAGGGGCCAGAGATGGGCAGTCGCCAGGGGTGGATAGCGCGGTACACATAATTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR CCA 72 bp | GCAGATGAGAATTATGTGTACCGCGCTATCCACCCCTaGCGACTGCCCATCTCTGGCCCCTCCCACTTGCTC | + |
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Preference number: 3 (lower is better) Translates to: ADENYVYRAIHP*RLPISGPSHLL Trigger: GAGCAAGTGGGAGGGGCCAGAGATGGGCAGTCGCCAGGGGTGGATAGCGCGGTACACATAATTCTCATCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR TCA 72 bp | GCCCATCTCTGGCCCCTCCCACTTGCTCTGCAGCAATaGGTCTACAGCGAGATGATTAGAGACTGCTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: AHLWPLPLALQQ*VYSEMIRDCCS Trigger: AGAGCAGCAGTCTCTAATCATCTCGCTGTAGACTCATTGCTGCAGAGCAAGTGGGAGGGGCCAGAGATGGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR GCA 72 bp | TTTTACGTAAGGTCACAGCGGTCTCGTTGTGGTGCGTaGTCCTTGGTTTTTGCAGGAAGGCTCTGCTTCCCT | + |
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Preference number: 3 (lower is better) Translates to: FYVRSQRSRCGA*SLVFAGRLCFP Trigger: AGGGAAGCAGAGCCTTCCTGCAAAAACCAAGGAGCACGCACCACAACGAGACCGCTGTGACCTTACGTAAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR GCA 72 bp | TGTGGTGCGTGCTCCTTGGTTTTTGCAGGAAGGCTCTaGTTCCCTCTTGTTCGCCAACCTCTCAAGTATACA | + |
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Preference number: 3 (lower is better) Translates to: CGACSLVFAGRL*FPLVRQPLKYT Trigger: TGTATACTTGAGAGGTTGGCGAACAAGAGGGAAGCAGAGCCTTCCTGCAAAAACCAAGGAGCACGCACCACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR GCA 72 bp | GGAAAGCTAGACCACGGTCCCACTGAAGATGGAGTCTaGAGTCTCCATGTCATGATACAACTCAGATGGCAA | + |
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Preference number: 3 (lower is better) Translates to: GKLDHGPTEDGV*SLHVMIQLRWQ Trigger: TTGCCATCTGAGTTGTATCATGACATGGAGACTGCAGACTCCATCTTCAGTGGGACCGTGGTCTAGCTTTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR CCA 72 bp | GCTAGGGCAAAGAGGTACATCGAAGAAGCAATCCTGTaGATCAGAAACCAGCTCAATCAGAGTTCTGCCTGC | + |
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Preference number: 3 (lower is better) Translates to: ARAKRYIEEAIL*IRNQLNQSSAC Trigger: GCAGGCAGAACTCTGATTGAGCTGGTTTCTGATCCACAGGATTGCTTCTTCGATGTACCTCTTTGCCCTAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR CCA 72 bp | ATCGGAATGATTTCCCTATGCCGTGAAACCTCACAATaGGGATGTGCTGATTGTCACATTAGACATTTCTGC | + |
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Preference number: 3 (lower is better) Translates to: IGMISLCRETSQ*GCADCHIRHFC Trigger: GCAGAAATGTCTAATGTGACAATCAGCACATCCCCATTGTGAGGTTTCACGGCATAGGGAAATCATTCCGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR CAA 90 bp | CCAAATCCCACTGCTACACACAGTTTCACAGTTTTACGTAAGGTCACAGCGGTCTCATTCCAAAACAAGTaGACTCAAGTCAGAGTGAAA | + |
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Preference number: 3 (lower is better) Translates to: PNPTATHSFTVLRKVTAVSFQNK*TQVRVK Trigger: TTTCACTCTGACTTGAGTCAACTTGTTTTGGAATGA...GACCGCTGTGACCTTACGTAAAACTGTGAAACTGTGTGTAGCAGTGGGATTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR CAA 90 bp | GATACCCAAAGGTCAAAAATACAAAGTGGTAAGTCAGGATTTAAAGTCAATTGGCGTGCTCCTTGGTTTTaGCAGGAAGGCTCTGCTTCC | + |
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Preference number: 3 (lower is better) Translates to: DTQRSKIQSGKSGFKVNWRAPWF*QEGSAS Trigger: GGAAGCAGAGCCTTCCTGCAAAAACCAAGGAGCACG...CCAATTGACTTTAAATCCTGACTTACCACTTTGTATTTTTGACCTTTGGGTATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR CCA 72 bp | GGAGTCTGCAGTCTCCATGTCATGATACAACTCAGATaGCAAAGAGTAGACTTAACTATGCTGTCTTCCATT | + |
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Preference number: 3 (lower is better) Translates to: GVCSLHVMIQLR*QRVDLTMLSSI Trigger: AATGGAAGACAGCATAGTTAAGTCTACTCTTTGCCATCTGAGTTGTATCATGACATGGAGACTGCAGACTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR CAA 90 bp | CTTTCTGCACCTTCTGAATGTAAGAGTCTCCAAATCCCACTGCTACACACAGTTATCCAGTTATGTCATTaGTTGCGAAAGAGTCCAAAC | + |
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Preference number: 3 (lower is better) Translates to: LSAPSECKSLQIPLLHTVIQLCH*LRKSPN Trigger: GTTTGGACTCTTTCGCAACAAATGACATAACTGGAT...AACTGTGTGTAGCAGTGGGATTTGGAGACTCTTACATTCAGAAGGTGCAGAAAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR CAA 90 bp | ACAACAATAGTTAGATGTTTGGCCCTTCCTCAGCACCAAGTGTATCCATTTCTGGAAATTCAGAGTTCTTaGAAAGAGCCCACTATGCAC | + |
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Preference number: 3 (lower is better) Translates to: TTIVRCLALPQHQVYPFLEIQSS*KEPTMH Trigger: GTGCATAGTGGGCTCTTTCAAAGAACTCTGAATTTC...CAGAAATGGATACACTTGGTGCTGAGGAAGGGCCAAACATCTAACTATTGTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR CAA 90 bp | ACAACAATAGTTAGATGTTTGGCCCTTCCTCAGCACCAAGTGTATCCATTTCTGATCCAGTTATGTCATTaGTTGCGAAAGAGTCCAAAC | + |
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Preference number: 3 (lower is better) Translates to: TTIVRCLALPQHQVYPFLIQLCH*LRKSPN Trigger: GTTTGGACTCTTTCGCAACAAATGACATAACTGGAT...CAGAAATGGATACACTTGGTGCTGAGGAAGGGCCAAACATCTAACTATTGTTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR TCA 72 bp | AAAAACGTATATACCCAACTCCTGAAGAGTCTAAGATaGTGGTGCTGCATTGCACACAGTAGGTCATCTATT | + |
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Preference number: 3 (lower is better) Translates to: KNVYTQLLKSLR*WCCIAHSRSSI Trigger: AATAGATGACCTACTGTGTGCAATGCAGCACCATCATCTTAGACTCTTCAGGAGTTGGGTATATACGTTTTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR CAA 90 bp | GATACCCAAAGGTCAAAAATACAAAGTGGTAAGTCAGGATTTAAAGTCAATTGGACAATAGTTAGATGTTaGGCCCTTCCTCAGCACCAA | + |
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Preference number: 3 (lower is better) Translates to: DTQRSKIQSGKSGFKVNWTIVRC*ALPQHQ Trigger: TTGGTGCTGAGGAAGGGCCAAACATCTAACTATTGT...CCAATTGACTTTAAATCCTGACTTACCACTTTGTATTTTTGACCTTTGGGTATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR-3UTR CAA 90 bp | GATACCCAAAGGTCAAAAATACAAAGTGGTAAGTCAGGATTTAAAGTCAATTGGGAAATTCAGAGTTCTTaGAAAGAGCCCACTATGCAC | + |
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Preference number: 3 (lower is better) Translates to: DTQRSKIQSGKSGFKVNWEIQSS*KEPTMH Trigger: GTGCATAGTGGGCTCTTTCAAAGAACTCTGAATTTC...CCAATTGACTTTAAATCCTGACTTACCACTTTGTATTTTTGACCTTTGGGTATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| 3UTR GCA 72 bp | AAAGATGATTGTGATGTTAGAGATTCCTTGTATAATTaGTGTGTCAGCAGTGACTTAATTCTGGCTAACAGT | + |
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Preference number: 3 (lower is better) Translates to: KDDCDVRDSLYN*CVSSDLILANS Trigger: ACTGTTAGCCAGAATTAAGTCACTGCTGACACAGCAATTATACAAGGAATCTCTAACATCACAATCATCTTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS-3UTR GCA 90 bp | GTGTACCGCGCTATCCACCCCTGGCGACTGCCCATCTCTGGCCCCTCCCACTTGCTCAGATTACTGAGCTaGGGAGGCTGTGGCGATGCA | + |
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Preference number: 4 (lower is better) Translates to: VYRAIHPWRLPISGPSHLLRLLS*GGCGDA Trigger: TGCATCGCCACAGCCTCCGCAGCTCAGTAATCTGAG...CAAGTGGGAGGGGCCAGAGATGGGCAGTCGCCAGGGGTGGATAGCGCGGTACAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS-3UTR CCA 90 bp | GTGTACCGCGCTATCCACCCCTGGCGACTGCCCATCTCTGGCCCCTCCCACTTGTACATAGACATCTTCTaGACGTACGTGGAAGCCTGG | + |
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Preference number: 4 (lower is better) Translates to: VYRAIHPWRLPISGPSHLYIDIF*TYVEAW Trigger: CCAGGCTTCCACGTACGTCCAGAAGATGTCTATGTA...CAAGTGGGAGGGGCCAGAGATGGGCAGTCGCCAGGGGTGGATAGCGCGGTACAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS-3UTR TCA 90 bp | CTTTCTGCACCTTCTGAATGTAAGAGTCTCCAAATCCCACTGCTACACACAGTTGGGTCGCGGCGTCGCTaGGGCTGGTACTGCGCCCCG | + |
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Preference number: 4 (lower is better) Translates to: LSAPSECKSLQIPLLHTVGSRRR*GWYCAP Trigger: CGGGGCGCAGTACCAGCCTCAGCGACGCCGCGACCC...AACTGTGTGTAGCAGTGGGATTTGGAGACTCTTACATTCAGAAGGTGCAGAAAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS-3UTR CCA 90 bp | GTGTACCGCGCTATCCACCCCTGGCGACTGCCCATCTCTGGCCCCTCCCACTTGGTAATATCAATCCACTaGCAGTCTATGTCTGCCGCA | + |
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Preference number: 4 (lower is better) Translates to: VYRAIHPWRLPISGPSHLVISIH*QSMSAA Trigger: TGCGGCAGACATAGACTGCCAGTGGATTGATATTAC...CAAGTGGGAGGGGCCAGAGATGGGCAGTCGCCAGGGGTGGATAGCGCGGTACAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS-3UTR GCA 90 bp | ACAACAATAGTTAGATGTTTGGCCCTTCCTCAGCACCAAGTGTATCCATTTCTGATGGGCGTGCGCGGCTaGGAGGCTGCGTCGCCGTCG | + |
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Preference number: 4 (lower is better) Translates to: TTIVRCLALPQHQVYPFLMGVRG*EAASPS Trigger: CGACGGCGACGCAGCCTCGCAGCCGCGCACGCCCAT...CAGAAATGGATACACTTGGTGCTGAGGAAGGGCCAAACATCTAACTATTGTTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS-3UTR CCA 90 bp | ACAACAATAGTTAGATGTTTGGCCCTTCCTCAGCACCAAGTGTATCCATTTCTGCCAGCTTGGAACCAGTaGCGGGCGGCGGGCCGGGGA | + |
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Preference number: 4 (lower is better) Translates to: TTIVRCLALPQHQVYPFLPAWNQ*RAAGRG Trigger: TCCCCGGCCCGCCGCCCGCCACTGGTTCCAAGCTGG...CAGAAATGGATACACTTGGTGCTGAGGAAGGGCCAAACATCTAACTATTGTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS-3UTR CCA 90 bp | CGCCAACCTCTCAAGTATACAATGCTATGTGCTTCGCTAATTTGGGTTGTATTTCCAGCTTGGAACCAGTaGCGGGCGGCGGGCCGGGGA | + |
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Preference number: 4 (lower is better) Translates to: RQPLKYTMLCASLIWVVFPAWNQ*RAAGRG Trigger: TCCCCGGCCCGCCGCCCGCCACTGGTTCCAAGCTGG...AAATACAACCCAAATTAGCGAAGCACATAGCATTGTATACTTGAGAGGTTGGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS-3UTR TCA 90 bp | AATTTGAAAGGATCGTTCTACAGTATCAAAACTGAAATGCTAGCTAGGGCAAAGGGGTCGCGGCGTCGCTaGGGCTGGTACTGCGCCCCG | + |
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Preference number: 4 (lower is better) Translates to: NLKGSFYSIKTEMLARAKGSRRR*GWYCAP Trigger: CGGGGCGCAGTACCAGCCTCAGCGACGCCGCGACCC...CTTTGCCCTAGCTAGCATTTCAGTTTTGATACTGTAGAACGATCCTTTCAAATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS-3UTR GCA 90 bp | CCAAATCCCACTGCTACACACAGTTTCACAGTTTTACGTAAGGTCACAGCGGTCCCTGTGTGTGTGCAGTaGACGCAAAGCGCCTGTGGT | + |
|
Preference number: 4 (lower is better) Translates to: PNPTATHSFTVLRKVTAVPVCVQ*TQSACG Trigger: ACCACAGGCGCTTTGCGTGCACTGCACACACACAGG...GACCGCTGTGACCTTACGTAAAACTGTGAAACTGTGTGTAGCAGTGGGATTTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR GCA 90 bp | GATACCCAAAGGTCAAAAATACAAAGTGGTAAGTCAGGATTTAAAGTCAATTGGATGGGCGTGCGCGGCTaGGAGGCTGCGTCGCCGTCG | + |
|
Preference number: 4 (lower is better) Translates to: DTQRSKIQSGKSGFKVNWMGVRG*EAASPS Trigger: CGACGGCGACGCAGCCTCGCAGCCGCGCACGCCCAT...CCAATTGACTTTAAATCCTGACTTACCACTTTGTATTTTTGACCTTTGGGTATC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR GCA 90 bp | AATTTGAAAGGATCGTTCTACAGTATCAAAACTGAAATGCTAGCTAGGGCAAAGCGGAGGCTGTGGCGATaGAGTCCGGTTCGCCGCGCG | + |
|
Preference number: 4 (lower is better) Translates to: NLKGSFYSIKTEMLARAKRRLWR*SPVRRA Trigger: CGCGCGGCGAACCGGACTGCATCGCCACAGCCTCCG...CTTTGCCCTAGCTAGCATTTCAGTTTTGATACTGTAGAACGATCCTTTCAAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR GCA 90 bp | CTTTCTGCACCTTCTGAATGTAAGAGTCTCCAAATCCCACTGCTACACACAGTTAGAAGGGGACAAAGCTaGAGTGGCCCCAGAAGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: LSAPSECKSLQIPLLHTVRRGQS*SGPRRS Trigger: GCTCCTTCTGGGGCCACTGCAGCTTTGTCCCCTTCT...AACTGTGTGTAGCAGTGGGATTTGGAGACTCTTACATTCAGAAGGTGCAGAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR GCA 90 bp | CTGATTGTCACATTAGACATTTCTGCCCACAGAAAAGCTAAGCAGCGTGGGATCCTCAGATTACTGAGCTaGGGAGGCTGTGGCGATGCA | + |
|
Preference number: 4 (lower is better) Translates to: LIVTLDISAHRKAKQRGILRLLS*GGCGDA Trigger: TGCATCGCCACAGCCTCCGCAGCTCAGTAATCTGAG...GATCCCACGCTGCTTAGCTTTTCTGTGGGCAGAAATGTCTAATGTGACAATCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR GCA 90 bp | AATTTGAAAGGATCGTTCTACAGTATCAAAACTGAAATGCTAGCTAGGGCAAAGGCAGAAGAATGGGCGTaGGCGGCTGCGAGGCTGCGT | + |
|
Preference number: 4 (lower is better) Translates to: NLKGSFYSIKTEMLARAKAEEWA*AAARLR Trigger: ACGCAGCCTCGCAGCCGCGCACGCCCATTCTTCTGC...CTTTGCCCTAGCTAGCATTTCAGTTTTGATACTGTAGAACGATCCTTTCAAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR GCA 90 bp | CTTTCTGCACCTTCTGAATGTAAGAGTCTCCAAATCCCACTGCTACACACAGTTCAATCCCTGTGTGTGTaGAGTGCACGCAAAGCGCCT | + |
|
Preference number: 4 (lower is better) Translates to: LSAPSECKSLQIPLLHTVQSLCV*SARKAP Trigger: AGGCGCTTTGCGTGCACTGCACACACACAGGGATTG...AACTGTGTGTAGCAGTGGGATTTGGAGACTCTTACATTCAGAAGGTGCAGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CCA 90 bp | CTTTCTGCACCTTCTGAATGTAAGAGTCTCCAAATCCCACTGCTACACACAGTTCCGTTGTTCTCCCATTaGATTGTCTGGCGCCAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: LSAPSECKSLQIPLLHTVPLFSH*IVWRQA Trigger: TGCCTGGCGCCAGACAATCCAATGGGAGAACAACGG...AACTGTGTGTAGCAGTGGGATTTGGAGACTCTTACATTCAGAAGGTGCAGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR TCA 90 bp | TCGCCAACCTCTCAAGTATACAATGCTATGTGCTTCGCTAATTTGGGTTGTATTCGAGGCTCAGCAGACTaGACACCTGCCCGTTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SPTSQVYNAMCFANLGCIRGSAD*TPARCS Trigger: AGAACAACGGGCAGGTGTTCAGTCTGCTGAGCCTCG...AATACAACCCAAATTAGCGAAGCACATAGCATTGTATACTTGAGAGGTTGGCGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR GCA 90 bp | CACCAAATGACATGTCCCCTACTACACAGCAAGCAGTCATATATTAAATGTGTGAGAAGGGGACAAAGCTaGAGTGGCCCCAGAAGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: HQMTCPLLHSKQSYIKCVRRGQS*SGPRRS Trigger: GCTCCTTCTGGGGCCACTGCAGCTTTGTCCCCTTCT...CACACATTTAATATATGACTGCTTGCTGTGTAGTAGGGGACATGTCATTTGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR GCA 90 bp | ACAACAATAGTTAGATGTTTGGCCCTTCCTCAGCACCAAGTGTATCCATTTCTGCAATCCCTGTGTGTGTaGAGTGCACGCAAAGCGCCT | + |
|
Preference number: 4 (lower is better) Translates to: TTIVRCLALPQHQVYPFLQSLCV*SARKAP Trigger: AGGCGCTTTGCGTGCACTGCACACACACAGGGATTG...CAGAAATGGATACACTTGGTGCTGAGGAAGGGCCAAACATCTAACTATTGTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR TCA 90 bp | CCAAATCCCACTGCTACACACAGTTTCACAGTTTTACGTAAGGTCACAGCGGTCATTGTTAGTGTAGTCTaGTTCAGGCACCAGGTAGCT | + |
|
Preference number: 4 (lower is better) Translates to: PNPTATHSFTVLRKVTAVIVSVV*FRHQVA Trigger: AGCTACCTGGTGCCTGAATCAGACTACACTAACAAT...GACCGCTGTGACCTTACGTAAAACTGTGAAACTGTGTGTAGCAGTGGGATTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CCA 90 bp | CGCCAACCTCTCAAGTATACAATGCTATGTGCTTCGCTAATTTGGGTTGTATTTCCGTTGTTCTCCCATTaGATTGTCTGGCGCCAGGCA | + |
|
Preference number: 4 (lower is better) Translates to: RQPLKYTMLCASLIWVVFPLFSH*IVWRQA Trigger: TGCCTGGCGCCAGACAATCCAATGGGAGAACAACGG...AAATACAACCCAAATTAGCGAAGCACATAGCATTGTATACTTGAGAGGTTGGCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CCA 90 bp | CCAAATCCCACTGCTACACACAGTTTCACAGTTTTACGTAAGGTCACAGCGGTCGTAATATCAATCCACTaGCAGTCTATGTCTGCCGCA | + |
|
Preference number: 4 (lower is better) Translates to: PNPTATHSFTVLRKVTAVVISIH*QSMSAA Trigger: TGCGGCAGACATAGACTGCCAGTGGATTGATATTAC...GACCGCTGTGACCTTACGTAAAACTGTGAAACTGTGTGTAGCAGTGGGATTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CCA 90 bp | ACAACAATAGTTAGATGTTTGGCCCTTCCTCAGCACCAAGTGTATCCATTTCTGTCTTCTGGACGTACGTaGAAGCCTGGATGTAGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: TTIVRCLALPQHQVYPFLSSGRT*KPGCSR Trigger: CCTACTACATCCAGGCTTCCACGTACGTCCAGAAGA...CAGAAATGGATACACTTGGTGCTGAGGAAGGGCCAAACATCTAACTATTGTTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| 3UTR CAA 72 bp | GATCAGAAACCAGCTCAATCAGAGTTCTGCCTGCATTaGCTTATGGGTAAGTGTGCTTTCAGGCAGATGAGA | + |
|
Preference number: 4 (lower is better) Translates to: DQKPAQSEFCLH*LMGKCAFRQMR Trigger: TCTCATCTGCCTGAAAGCACACTTACCCATAAGCAAATGCAGGCAGAACTCTGATTGAGCTGGTTTCTGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR TCA 90 bp | GATACCCAAAGGTCAAAAATACAAAGTGGTAAGTCAGGATTTAAAGTCAATTGGCGAGGCTCAGCAGACTaGACACCTGCCCGTTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: DTQRSKIQSGKSGFKVNWRGSAD*TPARCS Trigger: AGAACAACGGGCAGGTGTTCAGTCTGCTGAGCCTCG...CCAATTGACTTTAAATCCTGACTTACCACTTTGTATTTTTGACCTTTGGGTATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR TCA 90 bp | TCGCCAACCTCTCAAGTATACAATGCTATGTGCTTCGCTAATTTGGGTTGTATTTGTGGTCATAGTCTCTaGCATCCGCCCTATATGCTG | + |
|
Preference number: 4 (lower is better) Translates to: SPTSQVYNAMCFANLGCICGHSL*HPPYML Trigger: CAGCATATAGGGCGGATGTCAGAGACTATGACCACA...AATACAACCCAAATTAGCGAAGCACATAGCATTGTATACTTGAGAGGTTGGCGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CCA 90 bp | CGCCAACCTCTCAAGTATACAATGCTATGTGCTTCGCTAATTTGGGTTGTATTTCCCTATATGCTGAACTaGCCAGGCAGTTTTCTTCCG | + |
|
Preference number: 4 (lower is better) Translates to: RQPLKYTMLCASLIWVVFPYMLN*PGSFLP Trigger: CGGAAGAAAACTGCCTGGCCAGTTCAGCATATAGGG...AAATACAACCCAAATTAGCGAAGCACATAGCATTGTATACTTGAGAGGTTGGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR TCA 90 bp | ACAACAATAGTTAGATGTTTGGCCCTTCCTCAGCACCAAGTGTATCCATTTCTGATTGTTAGTGTAGTCTaGTTCAGGCACCAGGTAGCT | + |
|
Preference number: 4 (lower is better) Translates to: TTIVRCLALPQHQVYPFLIVSVV*FRHQVA Trigger: AGCTACCTGGTGCCTGAATCAGACTACACTAACAAT...CAGAAATGGATACACTTGGTGCTGAGGAAGGGCCAAACATCTAACTATTGTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR GCA 90 bp | CGCCAACCTCTCAAGTATACAATGCTATGTGCTTCGCTAATTTGGGTTGTATTTCTGGCAGTCTATGTCTaGCGCATAGGTGTCATAACA | + |
|
Preference number: 4 (lower is better) Translates to: RQPLKYTMLCASLIWVVFLAVYV*RIGVIT Trigger: TGTTATGACACCTATGCGGCAGACATAGACTGCCAG...AAATACAACCCAAATTAGCGAAGCACATAGCATTGTATACTTGAGAGGTTGGCG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR GCA 90 bp | TCGCCAACCTCTCAAGTATACAATGCTATGTGCTTCGCTAATTTGGGTTGTATTCTGGCAGTCTATGTCTaGCGCATAGGTGTCATAACA | + |
|
Preference number: 4 (lower is better) Translates to: SPTSQVYNAMCFANLGCILAVYV*RIGVIT Trigger: TGTTATGACACCTATGCGGCAGACATAGACTGCCAG...AATACAACCCAAATTAGCGAAGCACATAGCATTGTATACTTGAGAGGTTGGCGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CCA 90 bp | CGCCAACCTCTCAAGTATACAATGCTATGTGCTTCGCTAATTTGGGTTGTATTTTACATAGACATCTTCTaGACGTACGTGGAAGCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: RQPLKYTMLCASLIWVVFYIDIF*TYVEAW Trigger: CCAGGCTTCCACGTACGTCCAGAAGATGTCTATGTA...AAATACAACCCAAATTAGCGAAGCACATAGCATTGTATACTTGAGAGGTTGGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CCA 90 bp | TCGCCAACCTCTCAAGTATACAATGCTATGTGCTTCGCTAATTTGGGTTGTATTAAGTCCGATGTCCCTTaGTTCTTCACTCTTTGCGGA | + |
|
Preference number: 4 (lower is better) Translates to: SPTSQVYNAMCFANLGCIKSDVP*FFTLCG Trigger: TCCGCAAAGAGTGAAGAACCAAGGGACATCGGACTT...AATACAACCCAAATTAGCGAAGCACATAGCATTGTATACTTGAGAGGTTGGCGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CCA 90 bp | GATACCCAAAGGTCAAAAATACAAAGTGGTAAGTCAGGATTTAAAGTCAATTGGAAGTCCGATGTCCCTTaGTTCTTCACTCTTTGCGGA | + |
|
Preference number: 4 (lower is better) Translates to: DTQRSKIQSGKSGFKVNWKSDVP*FFTLCG Trigger: TCCGCAAAGAGTGAAGAACCAAGGGACATCGGACTT...CCAATTGACTTTAAATCCTGACTTACCACTTTGTATTTTTGACCTTTGGGTATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS CCA 90 bp | GCGGGCGGCGGGCCGGGGACGACCCGCGGCGACCCCAGACGGGCTTaGCGTCCTCGCACGGGTAGAGGCGGTGCGGTTGTCACGCAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: AGGGPGTTRGDPRRA*RPRTGRGGAVVTQQ Trigger: CTGCTGCGTGACAACCGCACCGCCTCTACCCGTGCGAGGACGCCAAGCCCGTCTGGGGTCGCCGCGGGTCGTCCCCGGCCCGCCGCCCGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS CCA 90 bp | GCGTGCGCGGCTGCGAGGCTGCGTCGCCGTCGGGTCTCCGGGCAGTaGCACTGGGGTCGCGGCGTCGCTGAGGCTGGTACTGCGCCCCGA | + |
|
Preference number: 5 (lower is better) Translates to: ACAAARLRRRRVSGQ*HWGRGVAEAGTAPR Trigger: TCGGGGCGCAGTACCAGCCTCAGCGACGCCGCGACCCCAGTGCCACTGCCCGGAGACCCGACGGCGACGCAGCCTCGCAGCCGCGCACGC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS CCA 90 bp | GCGGCTGCGAGGCTGCGTCGCCGTCGGGTCTCCGGGCAGTGGCACTaGGGTCGCGGCGTCGCTGAGGCTGGTACTGCGCCCCGAGGCTCA | + |
|
Preference number: 5 (lower is better) Translates to: AAARLRRRRVSGQWH*GRGVAEAGTAPRGS Trigger: TGAGCCTCGGGGCGCAGTACCAGCCTCAGCGACGCCGCGACCCCAGTGCCACTGCCCGGAGACCCGACGGCGACGCAGCCTCGCAGCCGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS GCA 90 bp | GAGGCGGTGCGGTTGTCACGCAGCAGAAGAATGGGCGTGCGCGGCTaGGAGGCTGCGTCGCCGTCGGGTCTCCGGGCAGTGGCACTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: EAVRLSRSRRMGVRG*EAASPSGLRAVALG Trigger: CCCCAGTGCCACTGCCCGGAGACCCGACGGCGACGCAGCCTCGCAGCCGCGCACGCCCATTCTTCTGCTGCGTGACAACCGCACCGCCTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS GCA 90 bp | AGGGGTCGGGCACCAGGTCCGGGAGACCGTACTGGAAGTAACCGGTaGCGTATCCAGGTCGGTTCCTGCTCCCGGGCCGGGGCCTCTCAT | + |
|
Preference number: 5 (lower is better) Translates to: RGRAPGPGDRTGSNR*RIQVGSCSRAGASH Trigger: ATGAGAGGCCCCGGCCCGGGAGCAGGAACCGACCTGGATACGGCACCGGTTACTTCCAGTACGGTCTCCCGGACCTGGTGCCCGACCCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS TCA 90 bp | CGTCGCCCACCATGCGATCTATGTGGCTGGGTGGCCTCAGATTACTaGGCTGCGGAGGCTGTGGCGATGCAGTCCGGTTCGCCGCGCGCC | + |
|
Preference number: 5 (lower is better) Translates to: RRPPCDLCGWVASDY*AAEAVAMQSGSPRA Trigger: GGCGCGCGGCGAACCGGACTGCATCGCCACAGCCTCCGCAGCTCAGTAATCTGAGGCCACCCAGCCACATAGATCGCATGGTGGGCGACG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS GCA 90 bp | CCCACCATGCGATCTATGTGGCTGGGTGGCCTCAGATTACTGAGCTaGGGAGGCTGTGGCGATGCAGTCCGGTTCGCCGCGCGCCGTGAG | + |
|
Preference number: 5 (lower is better) Translates to: PTMRSMWLGGLRLLS*GGCGDAVRFAARRE Trigger: CTCACGGCGCGCGGCGAACCGGACTGCATCGCCACAGCCTCCGCAGCTCAGTAATCTGAGGCCACCCAGCCACATAGATCGCATGGTGGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS CCA 90 bp | GGGATTGTAGGGGTCGTCGCCCACCATGCGATCTATGTGGCTGGGTaGCCTCAGATTACTGAGCTGCGGAGGCTGTGGCGATGCAGTCCG | + |
|
Preference number: 5 (lower is better) Translates to: GIVGVVAHHAIYVAG*PQITELRRLWRCSP Trigger: CGGACTGCATCGCCACAGCCTCCGCAGCTCAGTAATCTGAGGCCACCCAGCCACATAGATCGCATGGTGGGCGACGACCCCTACAATCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS GCA 90 bp | GGAGACCGTACTGGAAGTAACCGGTGCCGTATCCAGGTCGGTTCCTaGTCCCGGGCCGGGGCCTCTCATACGTGTCATAGTAGTTATAAT | + |
|
Preference number: 5 (lower is better) Translates to: GDRTGSNRCRIQVGS*SRAGASHTCHSSYN Trigger: ATTATAACTACTATGACACGTATGAGAGGCCCCGGCCCGGGAGCAGGAACCGACCTGGATACGGCACCGGTTACTTCCAGTACGGTCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS CCA 90 bp | TCCCAGGAGTACCGAGGGCGGCTTGGTAAGAAGTCCGATGTCCCTTaGTTCTTCACTCTTTGCGGAAATCGTAGCAGTACCCTGTGGTCA | + |
|
Preference number: 5 (lower is better) Translates to: SQEYRGRLGKKSDVP*FFTLCGNRSSTLWS Trigger: TGACCACAGGGTACTGCTACGATTTCCGCAAAGAGTGAAGAACCAAGGGACATCGGACTTCTTACCAAGCCGCCCTCGGTACTCCTGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS TCA 90 bp | TCACTCTTTGCGGAAATCGTAGCAGTACCCTGTGGTCATAGTCTCTaGCATCCGCCCTATATGCTGAACTGGCCAGGCAGTTTTCTTCCG | + |
|
Preference number: 5 (lower is better) Translates to: SLFAEIVAVPCGHSL*HPPYMLNWPGSFLP Trigger: CGGAAGAAAACTGCCTGGCCAGTTCAGCATATAGGGCGGATGTCAGAGACTATGACCACAGGGTACTGCTACGATTTCCGCAAAGAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CAA 90 bp | CTGATTGTCACATTAGACATTTCTGCCCACAGAAAAGCTAAGCAGCGTGGGATCTGTTCTCCCATTGGATaGTCTGGCGCCAGGCACCAG | + |
|
Preference number: 5 (lower is better) Translates to: LIVTLDISAHRKAKQRGICSPIG*SGARHQ Trigger: CTGGTGCCTGGCGCCAGACAATCCAATGGGAGAACA...GATCCCACGCTGCTTAGCTTTTCTGTGGGCAGAAATGTCTAATGTGACAATCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CAA 90 bp | CTTTCTGCACCTTCTGAATGTAAGAGTCTCCAAATCCCACTGCTACACACAGTTGTAGAGGCGGTGCGGTaGTCACGCAGCAGAAGAATG | + |
|
Preference number: 5 (lower is better) Translates to: LSAPSECKSLQIPLLHTVVEAVR*SRSRRM Trigger: CATTCTTCTGCTGCGTGACAACCGCACCGCCTCTAC...AACTGTGTGTAGCAGTGGGATTTGGAGACTCTTACATTCAGAAGGTGCAGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CAA 90 bp | CCAAATCCCACTGCTACACACAGTTTCACAGTTTTACGTAAGGTCACAGCGGTCGAAGTCCGATGTCCCTaGGTTCTTCACTCTTTGCGG | + |
|
Preference number: 5 (lower is better) Translates to: PNPTATHSFTVLRKVTAVEVRCP*VLHSLR Trigger: CCGCAAAGAGTGAAGAACCAAGGGACATCGGACTTC...GACCGCTGTGACCTTACGTAAAACTGTGAAACTGTGTGTAGCAGTGGGATTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CAA 90 bp | CACCAAATGACATGTCCCCTACTACACAGCAAGCAGTCATATATTAAATGTGTGGTAGAGGCGGTGCGGTaGTCACGCAGCAGAAGAATG | + |
|
Preference number: 5 (lower is better) Translates to: HQMTCPLLHSKQSYIKCVVEAVR*SRSRRM Trigger: CATTCTTCTGCTGCGTGACAACCGCACCGCCTCTAC...CACACATTTAATATATGACTGCTTGCTGTGTAGTAGGGGACATGTCATTTGGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CAA 90 bp | CATTGTTTCACTGGTTTCAGCACTTTAGAAAAGAATCCGTTCAAATTGTGGCTCTGTTCTCCCATTGGATaGTCTGGCGCCAGGCACCAG | + |
|
Preference number: 5 (lower is better) Translates to: HCFTGFSTLEKNPFKLWLCSPIG*SGARHQ Trigger: CTGGTGCCTGGCGCCAGACAATCCAATGGGAGAACA...GAGCCACAATTTGAACGGATTCTTTTCTAAAGTGCTGAAACCAGTGAAACAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CAA 90 bp | CTTTCTGCACCTTCTGAATGTAAGAGTCTCCAAATCCCACTGCTACACACAGTTGCAGCGCATCTCAGGTaGTACATAGACATCTTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: LSAPSECKSLQIPLLHTVAAHLR*YIDIFW Trigger: CCAGAAGATGTCTATGTACAACCTGAGATGCGCTGC...AACTGTGTGTAGCAGTGGGATTTGGAGACTCTTACATTCAGAAGGTGCAGAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
||
| CDS-3UTR CAA 90 bp | AATTTGAAAGGATCGTTCTACAGTATCAAAACTGAAATGCTAGCTAGGGCAAAGGAAGTCCGATGTCCCTaGGTTCTTCACTCTTTGCGG | + |
|
Preference number: 5 (lower is better) Translates to: NLKGSFYSIKTEMLARAKEVRCP*VLHSLR Trigger: CCGCAAAGAGTGAAGAACCAAGGGACATCGGACTTC...CTTTGCCCTAGCTAGCATTTCAGTTTTGATACTGTAGAACGATCCTTTCAAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS CCA 72 bp | CGAGCCCCCGACGGCGAGAAACCAGCTTGGAACCAGTaGCGGGCGGCGGGCCGGGGACGACCCGCGGCGACC | + |
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Preference number: 6 (lower is better) Translates to: RAPDGEKPAWNQ*RAAGRGRPAAT Trigger: GGTCGCCGCGGGTCGTCCCCGGCCCGCCGCCCGCCACTGGTTCCAAGCTGGTTTCTCGCCGTCGGGGGCTCG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS CCA 72 bp | GGGCCGGGGACGACCCGCGGCGACCCCAGACGGGCTTaGCGTCCTCGCACGGGTAGAGGCGGTGCGGTTGTC | + |
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Preference number: 6 (lower is better) Translates to: GPGTTRGDPRRA*RPRTGRGGAVV Trigger: GACAACCGCACCGCCTCTACCCGTGCGAGGACGCCAAGCCCGTCTGGGGTCGCCGCGGGTCGTCCCCGGCCC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS CCA 72 bp | AGGCTGCGTCGCCGTCGGGTCTCCGGGCAGTGGCACTaGGGTCGCGGCGTCGCTGAGGCTGGTACTGCGCCC | + |
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Preference number: 6 (lower is better) Translates to: RLRRRRVSGQWH*GRGVAEAGTAP Trigger: GGGCGCAGTACCAGCCTCAGCGACGCCGCGACCCCAGTGCCACTGCCCGGAGACCCGACGGCGACGCAGCCT 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS GCA 72 bp | CGGTTGTCACGCAGCAGAAGAATGGGCGTGCGCGGCTaGGAGGCTGCGTCGCCGTCGGGTCTCCGGGCAGTG | + |
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Preference number: 6 (lower is better) Translates to: RLSRSRRMGVRG*EAASPSGLRAV Trigger: CACTGCCCGGAGACCCGACGGCGACGCAGCCTCGCAGCCGCGCACGCCCATTCTTCTGCTGCGTGACAACCG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS GCA 72 bp | AGGCGGTGCGGTTGTCACGCAGCAGAAGAATGGGCGTaGGCGGCTGCGAGGCTGCGTCGCCGTCGGGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: RRCGCHAAEEWA*AAARLRRRRVS Trigger: GGAGACCCGACGGCGACGCAGCCTCGCAGCCGCGCACGCCCATTCTTCTGCTGCGTGACAACCGCACCGCCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS CAA 90 bp | ACCCCAGACGGGCTTGGCGTCCTCGCACGGGTAGAGGCGGTGCGGTaGTCACGCAGCAGAAGAATGGGCGTGCGCGGCTGCGAGGCTGCG | + |
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Preference number: 6 (lower is better) Translates to: TPDGLGVLARVEAVR*SRSRRMGVRGCEAA Trigger: CGCAGCCTCGCAGCCGCGCACGCCCATTCTTCTGCTGCGTGACAACCGCACCGCCTCTACCCGTGCGAGGACGCCAAGCCCGTCTGGGGT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS CAA 72 bp | GGGCTTGGCGTCCTCGCACGGGTAGAGGCGGTGCGGTaGTCACGCAGCAGAAGAATGGGCGTGCGCGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: GLGVLARVEAVR*SRSRRMGVRGC Trigger: GCAGCCGCGCACGCCCATTCTTCTGCTGCGTGACAACCGCACCGCCTCTACCCGTGCGAGGACGCCAAGCCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS GCA 72 bp | GCACCAGGTCCGGGAGACCGTACTGGAAGTAACCGGTaGCGTATCCAGGTCGGTTCCTGCTCCCGGGCCGGG | + |
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Preference number: 6 (lower is better) Translates to: APGPGDRTGSNR*RIQVGSCSRAG Trigger: CCCGGCCCGGGAGCAGGAACCGACCTGGATACGGCACCGGTTACTTCCAGTACGGTCTCCCGGACCTGGTGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS CCA 72 bp | GGGGTCGTCGCCCACCATGCGATCTATGTGGCTGGGTaGCCTCAGATTACTGAGCTGCGGAGGCTGTGGCGA | + |
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Preference number: 6 (lower is better) Translates to: GVVAHHAIYVAG*PQITELRRLWR Trigger: TCGCCACAGCCTCCGCAGCTCAGTAATCTGAGGCCACCCAGCCACATAGATCGCATGGTGGGCGACGACCCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS GCA 72 bp | ACTGGAAGTAACCGGTGCCGTATCCAGGTCGGTTCCTaGTCCCGGGCCGGGGCCTCTCATACGTGTCATAGT | + |
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Preference number: 6 (lower is better) Translates to: TGSNRCRIQVGS*SRAGASHTCHS Trigger: ACTATGACACGTATGAGAGGCCCCGGCCCGGGAGCAGGAACCGACCTGGATACGGCACCGGTTACTTCCAGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS TCA 72 bp | GCGGAAATCGTAGCAGTACCCTGTGGTCATAGTCTCTaGCATCCGCCCTATATGCTGAACTGGCCAGGCAGT | + |
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Preference number: 6 (lower is better) Translates to: AEIVAVPCGHSL*HPPYMLNWPGS Trigger: ACTGCCTGGCCAGTTCAGCATATAGGGCGGATGTCAGAGACTATGACCACAGGGTACTGCTACGATTTCCGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS GCA 72 bp | CATAACATCCAGGACTCAATCCCTGTGTGTGTGCAGTaGACGCAAAGCGCCTGTGGTACCCATAGTCACAGG | + |
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Preference number: 6 (lower is better) Translates to: HNIQDSIPVCVQ*TQSACGTHSHR Trigger: CCTGTGACTATGGGTACCACAGGCGCTTTGCGTGCACTGCACACACACAGGGATTGAGTCCTGGATGTTATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS CCA 72 bp | TACCGAGGGCGGCTTGGTAAGAAGTCCGATGTCCCTTaGTTCTTCACTCTTTGCGGAAATCGTAGCAGTACC | + |
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Preference number: 6 (lower is better) Translates to: YRGRLGKKSDVP*FFTLCGNRSST Trigger: GGTACTGCTACGATTTCCGCAAAGAGTGAAGAACCAAGGGACATCGGACTTCTTACCAAGCCGCCCTCGGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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| CDS TCA 72 bp | GCGAATGTCACAGCGTACAACATTGTTAGTGTAGTCTaGTTCAGGCACCAGGTAGCTGGGGTTTACACTGAC | + |
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Preference number: 6 (lower is better) Translates to: ANVTAYNIVSVV*FRHQVAGVYTD Trigger: GTCAGTGTAAACCCCAGCTACCTGGTGCCTGAATCAGACTACACTAACAATGTTGTACGCTGTGACATTCGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025409.9 ENSMUST00000171470.8 |
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