Pregenerated sensors for LOR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000043165Ensembl transcript IDs: ENSMUST00000058150.8
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | AAGTTAAGCCCATCGGCGCCCACGGAGAACTCTTCCAGCTCTGTTGTCTCCGTTCACCGCAGCCACCGCTaGTGCCGCCACCACCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KLSPSAPTENSSSSVVSVHRSHR*CRHHRW Trigger: CCAGCGGTGGTGGCGGCAGCAGCGGTGGCTGCGGTG...AACGGAGACAACAGAGCTGGAAGAGTTCTCCGTGGGCGCCGATGGGCTTAACTT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR TCA 90 bp | AAGTTAAGCCCATCGGCGCCCACGGAGAACTCTTCCAGCTCTGTTGTCTCCGTTCACCTCCGGAGTACTTaGCGCCCCCACCAGAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: KLSPSAPTENSSSSVVSVHLRST*RPHQSR Trigger: GCGGCTCTGGTGGGGGCGTCAAGTACTCCGGAGGTG...AACGGAGACAACAGAGCTGGAAGAGTTCTCCGTGGGCGCCGATGGGCTTAACTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR GCA 90 bp | CATGAGAAAGTTAAGCCCATCGGCGCCCACGGAGAACTCTTCCAGCTCTGTTGTAACCACCTCCGCAGCTaGTGCCGCCGCCACCGGAAT | + |
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Preference number: 4 (lower is better) Translates to: HEKVKPIGAHGELFQLCCNHLRS*CRRHRN Trigger: ATTCCGGTGGCGGCGGCAGCAGCTGCGGAGGTGGTT...ACAACAGAGCTGGAAGAGTTCTCCGTGGGCGCCGATGGGCTTAACTTTCTCATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR GCA 90 bp | CATGAGAAAGTTAAGCCCATCGGCGCCCACGGAGAACTCTTCCAGCTCTGTTGTGGCCAGGTAGGCGCCTaGTTCTGCTGGGTCTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: HEKVKPIGAHGELFQLCCGQVGA*FCWVWW Trigger: CCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCC...ACAACAGAGCTGGAAGAGTTCTCCGTGGGCGCCGATGGGCTTAACTTTCTCATG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR CCA 90 bp | AAGTTAAGCCCATCGGCGCCCACGGAGAACTCTTCCAGCTCTGTTGTCTCCGTTCAGGAGGGCAGGGAGTaGGCTGCTTTTTCTGGTGAG | + |
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Preference number: 4 (lower is better) Translates to: KLSPSAPTENSSSSVVSVQEGRE*AAFSGE Trigger: CTCACCAGAAAAAGCAGCCCACTCCCTGCCCTCCTG...AACGGAGACAACAGAGCTGGAAGAGTTCTCCGTGGGCGCCGATGGGCTTAACTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR CCA 90 bp | GGGCGCTTAAAATGTGAAGGGTTTGGAAACCTCAGGCAAATTCATGAGAAAGTTAGCCGCCTCCGCAGCTaGAGCCACCGCCGCCACCAG | + |
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Preference number: 4 (lower is better) Translates to: GRLKCEGFGNLRQIHEKVSRLRS*SHRRHQ Trigger: CTGGTGGCGGCGGTGGCTCCAGCTGCGGAGGCGGCT...AACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATTTTAAGCGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR TCA 90 bp | AAATGTGAAGGGTTTGGAAACCTCAGGCAAATTCATGAGAAAGTTAAGCCCATCCGCCTCCGGAGTACTTaGCGCCCCCACCGGAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: KCEGFGNLRQIHEKVKPIRLRST*RPHRSR Trigger: GCGGCTCCGGTGGGGGCGTCAAGTACTCCGGAGGCG...GATGGGCTTAACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR CCA 90 bp | TTGACTGAGGAGACACTAGAATTGGGAGGTAGTCATTCAGAAACCAAGATGAAAAGCCGCCTCCGCAGCTaGAGCCACCGCCTCCGCCTC | + |
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Preference number: 4 (lower is better) Translates to: LTEETLELGGSHSETKMKSRLRS*SHRLRL Trigger: GAGGCGGAGGCGGTGGCTCCAGCTGCGGAGGCGGCT...TTTCATCTTGGTTTCTGAATGACTACCTCCCAATTCTAGTGTCTCCTCAGTCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR TCA 90 bp | GGGCGCTTAAAATGTGAAGGGTTTGGAAACCTCAGGCAAATTCATGAGAAAGTTGGATCCACCGCCACCTaGGTAGCCGCCGCCACAGCT | + |
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Preference number: 4 (lower is better) Translates to: GRLKCEGFGNLRQIHEKVGSTAT*VAAATA Trigger: AGCTGTGGCGGCGGCTACTCAGGTGGCGGTGGATCC...AACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATTTTAAGCGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR GCA 90 bp | GGGCGCTTAAAATGTGAAGGGTTTGGAAACCTCAGGCAAATTCATGAGAAAGTTCACCTCCGCAGCTGCTaGCGCCGCCACCGGAATAGC | + |
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Preference number: 4 (lower is better) Translates to: GRLKCEGFGNLRQIHEKVHLRSC*RRHRNS Trigger: GCTATTCCGGTGGCGGCGGCAGCAGCTGCGGAGGTG...AACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATTTTAAGCGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR CCA 90 bp | TTATTGACTGAGGAGACACTAGAATTGGGAGGTAGTCATTCAGAAACCAAGATGCGCCGCCGCCGCAGCTaGATCCACCGCCACCTGAGT | + |
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Preference number: 4 (lower is better) Translates to: LLTEETLELGGSHSETKMRRRRS*IHRHLS Trigger: ACTCAGGTGGCGGTGGATCCAGCTGCGGCGGCGGCG...CATCTTGGTTTCTGAATGACTACCTCCCAATTCTAGTGTCTCCTCAGTCAATAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR CCA 90 bp | GGGCGCTTAAAATGTGAAGGGTTTGGAAACCTCAGGCAAATTCATGAGAAAGTTCGCTGCCGCCGCAACTaGAGCCACCACCAGAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: GRLKCEGFGNLRQIHEKVRCRRN*SHHQRS Trigger: GCTCCTCTGGTGGTGGCTCCAGTTGCGGCGGCAGCG...AACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATTTTAAGCGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR CCA 90 bp | TTGACTGAGGAGACACTAGAATTGGGAGGTAGTCATTCAGAAACCAAGATGAAACACCGCCTCCACAGCTaGAGCCACCCCCGGAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: LTEETLELGGSHSETKMKHRLHS*SHPRSS Trigger: GCTACTCCGGGGGTGGCTCCAGCTGTGGAGGCGGTG...TTTCATCTTGGTTTCTGAATGACTACCTCCCAATTCTAGTGTCTCCTCAGTCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR CCA 90 bp | TTGACTGAGGAGACACTAGAATTGGGAGGTAGTCATTCAGAAACCAAGATGAAAGGTCTGGTGGCAGACTaGCACACCCTTGCCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: LTEETLELGGSHSETKMKGLVAD*HTLATS Trigger: GGAGGTGGCAAGGGTGTGCCAGTCTGCCACCAGACC...TTTCATCTTGGTTTCTGAATGACTACCTCCCAATTCTAGTGTCTCCTCAGTCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR CCA 90 bp | GGGCGCTTAAAATGTGAAGGGTTTGGAAACCTCAGGCAAATTCATGAGAAAGTTTGCTTCTGCTGGGTCTaGTGGCAGACTGGCACACCC | + |
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Preference number: 4 (lower is better) Translates to: GRLKCEGFGNLRQIHEKVCFCWV*WQTGTP Trigger: GGGTGTGCCAGTCTGCCACCAGACCCAGCAGAAGCA...AACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATTTTAAGCGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR GCA 90 bp | AAATGTGAAGGGTTTGGAAACCTCAGGCAAATTCATGAGAAAGTTAAGCCCATCGTAGGCGCCTGCTTCTaGTGGGTCTGGTGGCAGACT | + |
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Preference number: 4 (lower is better) Translates to: KCEGFGNLRQIHEKVKPIVGACF*WVWWQT Trigger: AGTCTGCCACCAGACCCAGCAGAAGCAGGCGCCTAC...GATGGGCTTAACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR CCA 90 bp | TTATTGACTGAGGAGACACTAGAATTGGGAGGTAGTCATTCAGAAACCAAGATGTTCTGCTGGGTCTGGTaGCAGACTGGCACACCCTTG | + |
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Preference number: 4 (lower is better) Translates to: LLTEETLELGGSHSETKMFCWVW*QTGTPL Trigger: CAAGGGTGTGCCAGTCTGCCACCAGACCCAGCAGAA...CATCTTGGTTTCTGAATGACTACCTCCCAATTCTAGTGTCTCCTCAGTCAATAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS GCA 90 bp | AATAGCCGCCTCCGCAGCTGGAGCCACCGCCGCCACCAGAGTACTTaGCGCCTCCGGAACCGCCGCCGCAGCCACCGGAGCTGCCGCCTC | + |
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Preference number: 5 (lower is better) Translates to: NSRLRSWSHRRHQST*RLRNRRRSHRSCRL Trigger: GAGGCGGCAGCTCCGGTGGCTGCGGCGGCGGTTCCGGAGGCGGCAAGTACTCTGGTGGCGGCGGTGGCTCCAGCTGCGGAGGCGGCTATT 73% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS CCA 90 bp | GCACGGCCAGGTAGGCGCCTGCTTCTGCTGGGTCTGGTGGCAGACTaGCACACCCTTGCCACCTCCAGAGCCGCCACCAGAGGAGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: ARPGRRLLLLGLVAD*HTLATSRAATRGAA Trigger: GGCGGCTCCTCTGGTGGCGGCTCTGGAGGTGGCAAGGGTGTGCCAGTCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS TCA 90 bp | ATAGGAACCACCGCCTCCGCCTCCACAGCTAGAGCCTCCTCCAGATaGGCCGCCTCCGCAGCCAGAGCCGCCACCGCTATAATAGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: IGTTASASTARASSR*AASAARAATAIIAA Trigger: GGCGGCTATTATAGCGGTGGCGGCTCTGGCTGCGGAGGCGGCTCATCTGGAGGAGGCTCTAGCTGTGGAGGCGGAGGCGGTGGTTCCTAT 66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR CAA 90 bp | CATGAGAAAGTTAAGCCCATCGGCGCCCACGGAGAACTCTTCCAGCTCTGTTGTCCACCTCCGGAGTACTaGACGCCCCCACCAGAGCCG | + |
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Preference number: 5 (lower is better) Translates to: HEKVKPIGAHGELFQLCCPPPEY*TPPPEP Trigger: CGGCTCTGGTGGGGGCGTCAAGTACTCCGGAGGTGG...ACAACAGAGCTGGAAGAGTTCTCCGTGGGCGCCGATGGGCTTAACTTTCTCATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR CAA 90 bp | GGGCGCTTAAAATGTGAAGGGTTTGGAAACCTCAGGCAAATTCATGAGAAAGTTCTGGCACTGATACTGTaGGGACGATCCGCCGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: GRLKCEGFGNLRQIHEKVLALIL*GRSAAA Trigger: GGCGGCGGCGGATCGTCCCAACAGTATCAGTGCCAG...AACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATTTTAAGCGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS-3UTR CAA 90 bp | TTAAAATGTGAAGGGTTTGGAAACCTCAGGCAAATTCATGAGAAAGTTAAGCCCCAGACTGGCACACCCTaGCCACCTCCAGAGCCGCCA | + |
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Preference number: 5 (lower is better) Translates to: LKCEGFGNLRQIHEKVKPQTGTP*PPPEPP Trigger: TGGCGGCTCTGGAGGTGGCAAGGGTGTGCCAGTCTG...GGGCTTAACTTTCTCATGAATTTGCCTGAGGTTTCCAAACCCTTCACATTTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS GCA 72 bp | CTCCGCAGCTGGAGCCACCGCCGCCACCAGAGTACTTaGCGCCTCCGGAACCGCCGCCGCAGCCACCGGAGC | + |
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Preference number: 6 (lower is better) Translates to: LRSWSHRRHQST*RLRNRRRSHRS Trigger: GCTCCGGTGGCTGCGGCGGCGGTTCCGGAGGCGGCAAGTACTCTGGTGGCGGCGGTGGCTCCAGCTGCGGAG 75% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS CAA 72 bp | CCTCCGCAGCTGGAGCCACCGCCGCCACCAGAGTACTaGCCGCCTCCGGAACCGCCGCCGCAGCCACCGGAG | + |
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Preference number: 6 (lower is better) Translates to: PPQLEPPPPPEY*PPPEPPPQPPE Trigger: CTCCGGTGGCTGCGGCGGCGGTTCCGGAGGCGGCAAGTACTCTGGTGGCGGCGGTGGCTCCAGCTGCGGAGG 75% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS CCA 72 bp | TGCTTCCACCGCCGCCGGAATAGCCGCCTCCGCAGCTaGAGCCACCGCCGCCACCAGAGTACTTGCCGCCTC | + |
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Preference number: 6 (lower is better) Translates to: CFHRRRNSRLRS*SHRRHQSTCRL Trigger: GAGGCGGCAAGTACTCTGGTGGCGGCGGTGGCTCCAGCTGCGGAGGCGGCTATTCCGGCGGCGGTGGAAGCA 71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS CCA 72 bp | CACGGCCAGGTAGGCGCCTGCTTCTGCTGGGTCTGGTaGCAGACTGGCACACCCTTGCCACCTCCAGAGCCG | + |
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Preference number: 6 (lower is better) Translates to: HGQVGACFCWVW*QTGTPLPPPEP Trigger: CGGCTCTGGAGGTGGCAAGGGTGTGCCAGTCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS CCA 72 bp | GGTAGGCGCCTGCTTCTGCTGGGTCTGGTGGCAGACTaGCACACCCTTGCCACCTCCAGAGCCGCCACCAGA | + |
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Preference number: 6 (lower is better) Translates to: GRRLLLLGLVAD*HTLATSRAATR Trigger: TCTGGTGGCGGCTCTGGAGGTGGCAAGGGTGTGCCAGTCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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| CDS CCA 72 bp | TTGCACGGCCAGGTAGGCGCCTGCTTCTGCTGGGTCTaGTGGCAGACTGGCACACCCTTGCCACCTCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: LHGQVGACFCWV*WQTGTPLPPPE Trigger: CTCTGGAGGTGGCAAGGGTGTGCCAGTCTGCCACCAGACCCAGCAGAAGCAGGCGCCTACCTGGCCGTGCAA 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058150.8 |
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