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Pregenerated sensors for LNP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000109588

Ensembl transcript IDs: ENSMUST00000210579.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp GCTCCCGGAGTGATCCATCCACTGAGCATTTTCTGTGATGCCGCGTaGGAAGATGGCTTCGGGATCCCTGGTCCTCATGAGAATGTCTTC +
Preference number: 5 (lower is better)
Translates to: APGVIHPLSIFCDAA*EDGFGIPGPHENVF
Trigger: GAAGACATTCTCATGAGGACCAGGGATCCCGAAGCCATCTTCCCACGCGGCATCACAGAAAATGCTCAGTGGATGGATCACTCCGGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210579.2
CDS TCA 90 bp TGTTGGTGGTCCCGGAGTCCTCGCTCATCTTTGTCTCTCCAGCTGTaGCCCCAAAAGCTGCTCATCCACTTGGCAAAGGACACATCATCG +
Preference number: 5 (lower is better)
Translates to: CWWSRSPRSSLSLQL*PQKLLIHLAKDTSS
Trigger: CGATGATGTGTCCTTTGCCAAGTGGATGAGCAGCTTTTGGGGTCACAGCTGGAGAGACAAAGATGAGCGAGGACTCCGGGACCACCAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000210579.2
CDS TCA 72 bp GGCTCCCGGAGTGATCCATCCACTGAGCATTTTCTGTaGTGCCGCGTGGGAAGATGGCTTCGGGATCCCTGG +
Preference number: 6 (lower is better)
Translates to: GSRSDPSTEHFL*CRVGRWLRDPW
Trigger: CCAGGGATCCCGAAGCCATCTTCCCACGCGGCATCACAGAAAATGCTCAGTGGATGGATCACTCCGGGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210579.2
CDS TCA 72 bp CGCGTGGGAAGATGGCTTCGGGATCCCTGGTCCTCATaGGAATGTCTTCTAGGGTGGCAGTCAGATGACGTA +
Preference number: 6 (lower is better)
Translates to: RVGRWLRDPWSS*ECLLGWQSDDV
Trigger: TACGTCATCTGACTGCCACCCTAGAAGACATTCTCATGAGGACCAGGGATCCCGAAGCCATCTTCCCACGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210579.2
CDS CCA 72 bp GTGATCCATCCACTGAGCATTTTCTGTGATGCCGCGTaGGAAGATGGCTTCGGGATCCCTGGTCCTCATGAG +
Preference number: 6 (lower is better)
Translates to: VIHPLSIFCDAA*EDGFGIPGPHE
Trigger: CTCATGAGGACCAGGGATCCCGAAGCCATCTTCCCACGCGGCATCACAGAAAATGCTCAGTGGATGGATCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210579.2
CDS CAA 72 bp CAGGAAATGGGCAGGGTAGCGAAGCCTTCCTGTAGCTaGCTTCTTGTAGTTGTTGGTGGTCCCGGAGTCCTC +
Preference number: 6 (lower is better)
Translates to: QEMGRVAKPSCS*LLVVVGGPGVL
Trigger: GAGGACTCCGGGACCACCAACAACTACAAGAAGCAAGCTACAGGAAGGCTTCGCTACCCTGCCCATTTCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210579.2
CDS CAA 90 bp TGGGAAATGCAGGAAATGGGCAGGGTAGCGAAGCCTTCCTGTAGCTaGCTTCTTGTAGTTGTTGGTGGTCCCGGAGTCCTCGCTCATCTT +
Preference number: 6 (lower is better)
Translates to: WEMQEMGRVAKPSCS*LLVVVGGPGVLAHL
Trigger: AAGATGAGCGAGGACTCCGGGACCACCAACAACTACAAGAAGCAAGCTACAGGAAGGCTTCGCTACCCTGCCCATTTCCTGCATTTCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210579.2
CDS CCA 72 bp CCTTCTTCCCCTTGGGTCCCACAGAATGAGAGGGCTTaGTTTGAAGGCACAGGTGTCTTTCAAAGGACTCTG +
Preference number: 6 (lower is better)
Translates to: PSSPWVPQNERA*FEGTGVFQRTL
Trigger: CAGAGTCCTTTGAAAGACACCTGTGCCTTCAAACCAAGCCCTCTCATTCTGTGGGACCCAAGGGGAAGAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210579.2
CDS TCA 72 bp GTCCTCATGAGAATGTCTTCTAGGGTGGCAGTCAGATaGCGTAATGCTGGGAAATGCAGGAAATGGGCAGGG +
Preference number: 6 (lower is better)
Translates to: VLMRMSSRVAVR*RNAGKCRKWAG
Trigger: CCCTGCCCATTTCCTGCATTTCCCAGCATTACGTCATCTGACTGCCACCCTAGAAGACATTCTCATGAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210579.2
CDS CAA 72 bp CCTGCATTTTGGAATGGGCTCTTCTTTGTGATTCTGTaGGCTCCCGGAGTGATCCATCCACTGAGCATTTTC +
Preference number: 6 (lower is better)
Translates to: PAFWNGLFFVIL*APGVIHPLSIF
Trigger: GAAAATGCTCAGTGGATGGATCACTCCGGGAGCCAACAGAATCACAAAGAAGAGCCCATTCCAAAATGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000210579.2
CDS CCA 72 bp CTCTCCAGCTGTGACCCCAAAAGCTGCTCATCCACTTaGCAAAGGACACATCATCGTTATCATCATCATCAT +
Preference number: 6 (lower is better)
Translates to: LSSCDPKSCSST*QRTHHRYHHHH
Trigger: ATGATGATGATGATAACGATGATGTGTCCTTTGCCAAGTGGATGAGCAGCTTTTGGGGTCACAGCTGGAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000210579.2