RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LMTK3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062044

Ensembl transcript IDs: ENSMUST00000072580.12, ENSMUST00000120005.10, ENSMUST00000209351.2, ENSMUST00000209617.2, ENSMUST00000209701.2, ENSMUST00000211127.2, ENSMUST00000211609.2, ENSMUST00000233503.2

Found 437 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCCTCTGCAGTGTCCGAAGGTCTCGAGGGGGAAGTTCAGGGGACATaGCTTCAGGTGGCCGCTGGGCCCGAAGGTATCGCTTCAGGTCCC +
Preference number: 1 (lower is better)
Translates to: SSAVSEGLEGEVQGT*LQVAAGPEGIASGP
Trigger: GGGACCTGAAGCGATACCTTCGGGCCCAGCGGCCACCTGAAGGCATGTCCCCTGAACTTCCCCCTCGAGACCTTCGGACACTGCAGAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000209351.2
ENSMUST00000211127.2
3UTR GCA 90 bp GAGTGCAGGTGTGCCAGTCCTCGGGCAATCTCTAGACCCATCCTCTaGAGTGTCCGAAGGTCTCGAGGGGGAAGTTCAGGGGACATGCCT +
Preference number: 1 (lower is better)
Translates to: ECRCASPRAISRPIL*SVRRSRGGSSGDMP
Trigger: AGGCATGTCCCCTGAACTTCCCCCTCGAGACCTTCGGACACTGCAGAGGATGGGTCTAGAGATTGCCCGAGGACTGGCACACCTGCACTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000209351.2
ENSMUST00000211127.2
3UTR CCA 90 bp CAGCCTCAGGCACCTCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATaGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTT +
Preference number: 1 (lower is better)
Translates to: QPQAPPQRLCQCQGQ*LHRPHKILLASPLL
Trigger: AAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGAGGTGCCTGAGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
3UTR CCA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTaGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGG +
Preference number: 1 (lower is better)
Translates to: ALGPKEFGSVQFQDV*LSSDGASCLMWLQG
Trigger: CCCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
3UTR GCA 90 bp GCACCCATAGGCGCTCGGGTGTCAGGTAGTAGTCTTCCTTGTAGTTaGTGTGCGCCAGCCCATAGTCTCCAATACGCACAGTCAGGTCTG +
Preference number: 1 (lower is better)
Translates to: APIGARVSGSSLPCS*CAPAHSLQYAQSGL
Trigger: CAGACCTGACTGTGCGTATTGGAGACTATGGGCTGGCGCACAGCAACTACAAGGAAGACTACTACCTGACACCCGAGCGCCTATGGGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000209351.2
ENSMUST00000211127.2
3UTR CCA 90 bp CACTGGAGGACGTTGGGATGCTGCAGGCTCCTAGTGCCACACAGCTaGGATTTAAGTTCAAGGTCTATGTCTGCATCAGCAAACGTCTGC +
Preference number: 1 (lower is better)
Translates to: HWRTLGCCRLLVPHS*DLSSRSMSASANVC
Trigger: GCAGACGTTTGCTGATGCAGACATAGACCTTGAACTTAAATCCCAGCTGTGTGGCACTAGGAGCCTGCAGCATCCCAACGTCCTCCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211127.2
3UTR-3UTR CCA 90 bp GCTCGGGCGCTGCCCAGCGCAGCGGCACCCATAGGCGCTCGGGTGTCAGGTAGTGGACATGCCTTCAGGTaGCCGCTGGGCCCGAAGGTA +
Preference number: 2 (lower is better)
Translates to: ARALPSAAAPIGARVSGSGHAFR*PLGPKV
Trigger: TACCTTCGGGCCCAGCGGCCACCTGAAGGCATGTCC...ACTACCTGACACCCGAGCGCCTATGGGTGCCGCTGCGCTGGGCAGCGCCCGAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000209351.2
ENSMUST00000211127.2
3UTR-3UTR CCA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCATCAGGGGACTCATCTaGGGGGCTGGGTGGAGGGCC +
Preference number: 2 (lower is better)
Translates to: ALGPKEFGSVQFQDVWLSIRGLI*GAGWRA
Trigger: GGCCCTCCACCCAGCCCCCCAGATGAGTCCCCTGAT...GGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
3UTR-3UTR CCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTaGCTCCAAGGGGGTCGGGGG +
Preference number: 2 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGASCLM*LQGGRG
Trigger: CCCCCGACCCCCTTGGAGCCACATGAGGCAGGAAGC...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
3UTR-3UTR CCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGGCTGGGTGGAGGGCCTaGGCCTCCTGTTTGGCACAT +
Preference number: 2 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGAGWRA*ASCLAH
Trigger: ATGTGCCAAACAGGAGGCCCAGGCCCTCCACCCAGC...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
3UTR-3UTR CCA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACCAGTGTCAGGGGCAATaGCTCCATCGTCCACACAAG +
Preference number: 2 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDQCQGQ*LHRPHK
Trigger: CTTGTGTGGACGATGGAGCCATTGCCCCTGACACTG...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
3UTR-3UTR CCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGCTCCTGTTTGGCACATaGTGGAGGAGAGGGAGGGCC +
Preference number: 2 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGLLFGT*WRRGRA
Trigger: GGCCCTCCCTCTCCTCCACCATGTGCCAAACAGGAG...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
3UTR-3UTR GCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGGCCCTCTTCTTGGGATaGAAAGGGGCTGGGTCTTTG +
Preference number: 2 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGALFLG*KGAGSL
Trigger: CAAAGACCCAGCCCCTTTGCATCCCAAGAAGAGGGC...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
3UTR-3UTR CCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGCAGTGTCAGGGGCAATaGCTCCATCGTCCACACAAG +
Preference number: 2 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGQCQGQ*LHRPHK
Trigger: CTTGTGTGGACGATGGAGCCATTGCCCCTGACACTG...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
3UTR-3UTR CCA 90 bp CAGATCGCTGTGCACATAGTTGTGAGAGTGCAGGTGTGCCAGTCCTCGGGCAATCTAGTGCCACACAGCTaGGATTTAAGTTCAAGGTCT +
Preference number: 2 (lower is better)
Translates to: QIAVHIVVRVQVCQSSGNLVPHS*DLSSRS
Trigger: AGACCTTGAACTTAAATCCCAGCTGTGTGGCACTAG...ATTGCCCGAGGACTGGCACACCTGCACTCTCACAACTATGTGCACAGCGATCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211127.2
3UTR CCA 72 bp CGCTGGGCCCGAAGGTATCGCTTCAGGTCCCCCAGCTaGCAGAACTCCATGATCAACAGGAAGGGCAAGGTC +
Preference number: 3 (lower is better)
Translates to: RWARRYRFRSPS*QNSMINRKGKV
Trigger: GACCTTGCCCTTCCTGTTGATCATGGAGTTCTGCCAGCTGGGGGACCTGAAGCGATACCTTCGGGCCCAGCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000209351.2
ENSMUST00000211127.2
3UTR-3UTR CAA 90 bp AGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCGCCTGGGCCTCCTGTTaGGCACATGGTGGAGGAGAG +
Preference number: 3 (lower is better)
Translates to: RGLWAQKSSVQFSSKTCGAWASC*AHGGGE
Trigger: CTCTCCTCCACCATGTGCCAAACAGGAGGCCCAGGC...GCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
3UTR-3UTR CAA 90 bp CTCGGGTGTCAGGTAGTAGTCTTCCTTGTAGTTGCTGTGCGCCAGCCCATAGTCGCCTCGGAGATGAACTaGCGCTGTTCCAGGGGCCCG +
Preference number: 3 (lower is better)
Translates to: LGCQVVVFLVVAVRQPIVASEMN*RCSRGP
Trigger: CGGGCCCCTGGAACAGCGCAAGTTCATCTCCGAGGC...GACTATGGGCTGGCGCACAGCAACTACAAGGAAGACTACTACCTGACACCCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209351.2
3UTR-3UTR CAA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCGCCTGGGCCTCCTGTTaGGCACATGGTGGAGGAGAG +
Preference number: 3 (lower is better)
Translates to: ALGPKEFGSVQFQDVWLSAWASC*AHGGGE
Trigger: CTCTCCTCCACCATGTGCCAAACAGGAGGCCCAGGC...GGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
3UTR GCA 72 bp ACACAGACGCCCAGGCACTGGAGGACGTTGGGATGCTaGAGGCTCCTAGTGCCACACAGCTGGGATTTAAGT +
Preference number: 3 (lower is better)
Translates to: TQTPRHWRTLGC*RLLVPHSWDLS
Trigger: ACTTAAATCCCAGCTGTGTGGCACTAGGAGCCTGCAGCATCCCAACGTCCTCCAGTGCCTGGGCGTCTGTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211127.2
3UTR GCA 72 bp GGCGCTCGGGTGTCAGGTAGTAGTCTTCCTTGTAGTTaGTGTGCGCCAGCCCATAGTCTCCAATACGCACAG +
Preference number: 3 (lower is better)
Translates to: GARVSGSSLPCS*CAPAHSLQYAQ
Trigger: CTGTGCGTATTGGAGACTATGGGCTGGCGCACAGCAACTACAAGGAAGACTACTACCTGACACCCGAGCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000209351.2
ENSMUST00000211127.2
3UTR CCA 72 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTaGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGG +
Preference number: 3 (lower is better)
Translates to: PKEFGSVQFQDV*LSSDGASCLMW
Trigger: CCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
3UTR CCA 72 bp ACGTTGGGATGCTGCAGGCTCCTAGTGCCACACAGCTaGGATTTAAGTTCAAGGTCTATGTCTGCATCAGCA +
Preference number: 3 (lower is better)
Translates to: TLGCCRLLVPHS*DLSSRSMSASA
Trigger: TGCTGATGCAGACATAGACCTTGAACTTAAATCCCAGCTGTGTGGCACTAGGAGCCTGCAGCATCCCAACGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211127.2
CDS-3UTR GCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCCAGCAGCTCGGGCGCTaGCCAGCGCAGCGGCACCCA +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPQQLGR*PAQRHP
Trigger: TGGGTGCCGCTGCGCTGGGCAGCGCCCGAGCTGCTG...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
73% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCTGCCAGGGTCTCTCCTaGGCCCCGGCCCTCGGGGTC +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGCQGLS*APALGV
Trigger: GACCCCGAGGGCCGGGGCGCAGGAGAGACCCTGGCA...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCCGCTGTCCCCCGGCTTaGGGCCCGGAGACGATAGGC +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPRCPPA*GPETIG
Trigger: GCCTATCGTCTCCGGGCCCCAAGCCGGGGGACAGCG...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCCTCGGTCCCGGGGTCTaGGTTCCCGCTCTTGGGGGC +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPLGPGV*VPALGG
Trigger: GCCCCCAAGAGCGGGAACCCAGACCCCGGGACCGAG...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCCATCTCCTGGGGTGGTaGGGTGGGGAGGCGTCGGGG +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPHLLGW*GGEASG
Trigger: CCCCGACGCCTCCCCACCCCACCACCCCAGGAGATG...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCCTGGAGATCAGAAGCTaGGGGGCGCTGGGCTGGCGG +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPLEIRS*GALGWR
Trigger: CCGCCAGCCCAGCGCCCCTCAGCTTCTGATCTCCAG...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCGCGAATCCATCCGGGTaGGCTGGGGACGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPANPSG*AGDARQ
Trigger: CTGCCTGGCGTCCCCAGCGCACCCGGATGGATTCGC...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAGAAGCTGAGGGGCGCTaGGCTGGCGGCCGCCAGCAA +
Preference number: 4 (lower is better)
Translates to: WPSWGQERPLLCQGALGPEAEGR*AGGRQQ
Trigger: TTGCTGGCGGCCGCCAGCCCAGCGCCCCTCAGCTTC...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCCTGGGTTCCCGCTCTTaGGGGCTGGGCCAAGCTGGC +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPLGSRS*GLGQAG
Trigger: GCCAGCTTGGCCCAGCCCCCAAGAGCGGGAACCCAG...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCTCGGTCCCGGGGTCTaGGTTCCCGCTCTTGGGGGC +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGLGPGV*VPALGG
Trigger: GCCCCCAAGAGCGGGAACCCAGACCCCGGGACCGAG...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCGGGCCACCTCCGGCCTaGCTTTCAGGGGCACTGGCT +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPGPPPA*LSGALA
Trigger: AGCCAGTGCCCCTGAAAGCCAGGCCGGAGGTGGCCC...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCTCGTCGGCCGCGCGTaGAGACTTGAGCAGCCCCCG +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGLVGRA*RLEQPP
Trigger: CGGGGGCTGCTCAAGTCTCCACGCGCGGCCGACGAG...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAGGGGGTGCTGATGTCTaGGTGTGGAGGCTGCGGGGC +
Preference number: 4 (lower is better)
Translates to: WPSWGQERPLLCQGALGPGGADV*VWRLRG
Trigger: GCCCCGCAGCCTCCACACTCAGACATCAGCACCCCC...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAACAGCAGCTCGGGCGCTaGCCAGCGCAGCGGCACCCA +
Preference number: 4 (lower is better)
Translates to: PSWGQERPLLCQGALGPKQQLGR*PAQRHP
Trigger: TGGGTGCCGCTGCGCTGGGCAGCGCCCGAGCTGCTG...TTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAATGCCAGGGTCTCTCCTaGGCCCCGGCCCTCGGGGTC +
Preference number: 4 (lower is better)
Translates to: PSWGQERPLLCQGALGPKCQGLS*APALGV
Trigger: GACCCCGAGGGCCGGGGCGCAGGAGAGACCCTGGCA...TTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCAGGGACCCTCGCGGCTaGACAAGGGACAGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGRDPRG*TRDRGG
Trigger: CCCTCCCCTGTCCCTTGTGCAGCCGCGAGGGTCCCT...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAGGGACCCTCGCGGCTaGACAAGGGACAGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: WPSWGQERPLLCQGALGPRDPRG*TRDRGG
Trigger: CCCTCCCCTGTCCCTTGTGCAGCCGCGAGGGTCCCT...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCATGTCCCCGTCGGCGCTaGTCACCACGACGGGCACTG +
Preference number: 4 (lower is better)
Translates to: WPSWGQERPLLCQGALGPCPRRR*SPRRAL
Trigger: CAGTGCCCGTCGTGGTGAGCAGCGCCGACGGGGACA...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCACTTCTCCTGGGACCCTaGGAGTGGGAGGGGACCCGG +
Preference number: 4 (lower is better)
Translates to: WPSWGQERPLLCQGALGPLLLGP*EWEGTR
Trigger: CCGGGTCCCCTCCCACTCCCAGGGTCCCAGGAGAAG...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCCCTGGCTCTTCCTCTTaGGCCACCTCCGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPPGSSS*ATSGLA
Trigger: AGCCAGGCCGGAGGTGGCCCAAGAGGAAGAGCCAGG...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp GCCTTCAGGTGGCCGCTGGGCCCGAAGGTATCGCTTCAGGTCCCCCAGCTGGCAGGGGGTGCTGATGTCTaGGTGTGGAGGCTGCGGGGC +
Preference number: 4 (lower is better)
Translates to: AFRWPLGPKVSLQVPQLAGGADV*VWRLRG
Trigger: GCCCCGCAGCCTCCACACTCAGACATCAGCACCCCC...TGCCAGCTGGGGGACCTGAAGCGATACCTTCGGGCCCAGCGGCCACCTGAAGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000209351.2
CDS-3UTR GCA 90 bp AGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGGGGTGCCAGGGTCTCTCCTaGGCCCCGGCCCTCGGGGTC +
Preference number: 4 (lower is better)
Translates to: RRVAVQRWGFLPHVAPRGCQGLS*APALGV
Trigger: GACCCCGAGGGCCGGGGCGCAGGAGAGACCCTGGCA...CCCCCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCGGACATGCCTTCAGGTaGCCGCTGGGCCCGAAGGTA +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPGHAFR*PLGPKV
Trigger: TACCTTCGGGCCCAGCGGCCACCTGAAGGCATGTCC...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAACGCTGTCCCCCGGCTTaGGGCCCGGAGACGATAGGC +
Preference number: 4 (lower is better)
Translates to: PSWGQERPLLCQGALGPKRCPPA*GPETIG
Trigger: GCCTATCGTCTCCGGGCCCCAAGCCGGGGGACAGCG...TTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCGGCTTTCAGGGGCACTaGCTCCGGCCTCCTCTGTTG +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPGFQGH*LRPPLL
Trigger: CAACAGAGGAGGCCGGAGCCAGTGCCCCTGAAAGCC...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAACGTGAGCGTGAGCGGTaGGAGCGCCAGCGAGAGCCG +
Preference number: 4 (lower is better)
Translates to: PSWGQERPLLCQGALGPKRERER*ERQREP
Trigger: CGGCTCTCGCTGGCGCTCCCACCGCTCACGCTCACG...TTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAATCAGGCAGCGACTGTaGGGAGGAGGTCTCCTCCGC +
Preference number: 4 (lower is better)
Translates to: WPSWGQERPLLCQGALGPIRQRL*GGGLLR
Trigger: GCGGAGGAGACCTCCTCCTCACAGTCGCTGCCTGAT...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp GCCTTCAGGTGGCCGCTGGGCCCGAAGGTATCGCTTCAGGTCCCCCAGCTGGCAGGCAGGCATTGGCAGTaGGACCTCTGCCAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: AFRWPLGPKVSLQVPQLAGRHWQ*DLCQRQ
Trigger: CTGCCGCTGGCAGAGGTCTCACTGCCAATGCCTGCC...TGCCAGCTGGGGGACCTGAAGCGATACCTTCGGGCCCAGCGGCCACCTGAAGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209351.2
CDS-3UTR TCA 90 bp GGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAATGCTCGCTGTTCCCCTaGGGTGGTCCCAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: GPHGARRDLCCARGLWAQCSLFP*GGPKSR
Trigger: CCTGGACTTGGGACCACCTCAGGGGAACAGCGAGCA...TTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAACTACCAGCACGAAGCTaGCGTGCAGCTCGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: GPHGARRDLCCARGLWAQLPARS*RAARPA
Trigger: TGCTGGGCGAGCTGCACGGCAGCTTCGTGCTGGTAG...TTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGTGGAGGAGGGGGCCTaGGGGGCCGCTCAGACAGCA +
Preference number: 4 (lower is better)
Translates to: VPEASGPHGARRDLCCARVEEGA*GAAQTA
Trigger: TGCTGTCTGAGCGGCCCCCCAGGCCCCCTCCTCCAC...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp AGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGGGGGTGGAGGAGGGGGCCTaGGGGGCCGCTCAGACAGCA +
Preference number: 4 (lower is better)
Translates to: RRVAVQRWGFLPHVAPRGVEEGA*GAAQTA
Trigger: TGCTGTCTGAGCGGCCCCCCAGGCCCCCTCCTCCAC...CCCCCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCT
68% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAGGGGAAGAGGGGCTCTaGTGGAGAACCGTGCTCCTC +
Preference number: 4 (lower is better)
Translates to: WPSWGQERPLLCQGALGPGEEGL*WRTVLL
Trigger: GAGGAGCACGGTTCTCCACCAGAGCCCCTCTTCCCC...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGCCTGATCCCGAGGACTaGGCCGGGAAGGGTCGGGGC +
Preference number: 4 (lower is better)
Translates to: VPEASGPHGARRDLCCARPDPED*AGKGRG
Trigger: GCCCCGACCCTTCCCGGCCCAGTCCTCGGGATCAGG...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCGCTGCTGTCCTCGCCTaGGGAGCTCTCTTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGAAVLA*GALFLL
Trigger: GAGGAGGAAGAGAGCTCCCCAGGCGAGGACAGCAGC...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCCTTCTCCCAGGGCCCTaGGACTCTCCGAGGTCCAAT +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPLLPGP*DSPRSN
Trigger: ATTGGACCTCGGAGAGTCCCAGGGCCCTGGGAGAAG...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAACTGGGTTCCCGCTCTTaGGGGCTGGGCCAAGCTGGC +
Preference number: 4 (lower is better)
Translates to: PSWGQERPLLCQGALGPKLGSRS*GLGQAG
Trigger: GCCAGCTTGGCCCAGCCCCCAAGAGCGGGAACCCAG...TTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGGCCCCCAGTGGCTGTaGCGGAGGTGGCAGTGGTCT +
Preference number: 4 (lower is better)
Translates to: PSWGQERPLLCQGALGPKGPQWL*RRWQWS
Trigger: AGACCACTGCCACCTCCGCCACAGCCACTGGGGGCC...TTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAACTGTTGGGCCCCCAGTaGCTGTGGCGGAGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: PSWGQERPLLCQGALGPKLLGPQ*LWRRWQ
Trigger: CTGCCACCTCCGCCACAGCCACTGGGGGCCCAACAG...TTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGCGTGAGCGTGAGCGGTaGGAGCGCCAGCGAGAGCCG +
Preference number: 4 (lower is better)
Translates to: VPEASGPHGARRDLCCARRERER*ERQREP
Trigger: CGGCTCTCGCTGGCGCTCCCACCGCTCACGCTCACG...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAGACCCGAACAGGAAATaGGGACCACAGCGTAGGGCG +
Preference number: 4 (lower is better)
Translates to: WPSWGQERPLLCQGALGPDPNRK*GPQRRA
Trigger: CGCCCTACGCTGTGGTCCTCATTTCCTGTTCGGGTC...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp CCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGTCTCGGACACCAGCTaGGGGACCTCGGAGGGAGTC +
Preference number: 4 (lower is better)
Translates to: PSWGQERPLLCQGALGPKVSDTS*GTSEGV
Trigger: GACTCCCTCCGAGGTCCCTCAGCTGGTGTCCGAGAC...TTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCGCCAGCTTCACGTGCTaGTGGCGGACAACAAAGGCC +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGASFTC*WRTTKA
Trigger: GGCCTTTGTTGTCCGCCAGCAGCACGTGAAGCTGGC...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCAAGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGCCTGATCCCGAGGACTaGGCCGGGAAGGGTCGGGGC +
Preference number: 4 (lower is better)
Translates to: PRRVAVQRWGFLPHVAPRPDPED*AGKGRG
Trigger: GCCCCGACCCTTCCCGGCCCAGTCCTCGGGATCAGG...CCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCTTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp AGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGGGGCTTCTCCTGGGACCCTaGGAGTGGGAGGGGACCCGG +
Preference number: 4 (lower is better)
Translates to: RRVAVQRWGFLPHVAPRGLLLGP*EWEGTR
Trigger: CCGGGTCCCCTCCCACTCCCAGGGTCCCAGGAGAAG...CCCCCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAACTTCTCCCAGGGCCCTaGGACTCTCCGAGGTCCAAT +
Preference number: 4 (lower is better)
Translates to: GPHGARRDLCCARGLWAQLLPGP*DSPRSN
Trigger: ATTGGACCTCGGAGAGTCCCAGGGCCCTGGGAGAAG...TTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCATCTCCAAGCCGTTCTaGGGCAAGGCTGCCTCGCAG +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGISKPF*GKAASQ
Trigger: CTGCGAGGCAGCCTTGCCCCAGAACGGCTTGGAGAT...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAGTTGTCTGGGACCCCTaGCTCTTCCTCTTGGGCCAC +
Preference number: 4 (lower is better)
Translates to: WPSWGQERPLLCQGALGPVVWDP*LFLLGH
Trigger: GTGGCCCAAGAGGAAGAGCCAGGGGTCCCAGACAAC...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCGTTGTCTGGGACCCCTaGCTCTTCCTCTTGGGCCAC +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGVVWDP*LFLLGH
Trigger: GTGGCCCAAGAGGAAGAGCCAGGGGTCCCAGACAAC...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAGTCCAGGAACAAGCGTaGCATCTCGGGGCCCTTCCT +
Preference number: 4 (lower is better)
Translates to: WPSWGQERPLLCQGALGPVQEQA*HLGALP
Trigger: AGGAAGGGCCCCGAGATGCCACGCTTGTTCCTGGAC...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCAAGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGCTCGTCGGCCGCGCGTaGAGACTTGAGCAGCCCCCG +
Preference number: 4 (lower is better)
Translates to: PRRVAVQRWGFLPHVAPRLVGRA*RLEQPP
Trigger: CGGGGGCTGCTCAAGTCTCCACGCGCGGCCGACGAG...CCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCTTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR TCA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGCAGGCATTGGCAGTaGGACCTCTGCCAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: VPEASGPHGARRDLCCARGRHWQ*DLCQRQ
Trigger: CTGCCGCTGGCAGAGGTCTCACTGCCAATGCCTGCC...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGTCTCCTGCAGGTAGCTaGGGTGCTGGCGGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: VPEASGPHGARRDLCCARSPAGS*GAGGSG
Trigger: GCCTGAGCCGCCAGCACCTCAGCTACCTGCAGGAGA...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCGCTGGCAGAACTCCATaGTCAACAGGAAGGGCAAGG +
Preference number: 4 (lower is better)
Translates to: VALMGPGETSAVPGGSGPAGRTP*STGRAR
Trigger: CCTTGCCCTTCCTGTTGATCATGGAGTTCTGCCAGC...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCGTGAGAGTGCAGGTGTaGCAGTCCTCGGGCAATCTC +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGVRVQV*QSSGNL
Trigger: GAGATTGCCCGAGGACTGGCACACCTGCACTCTCAC...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CCAAGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGGGCGCAGAAGCGGGTTaGCAGGGAGGTGCACCCCCA +
Preference number: 4 (lower is better)
Translates to: PRRVAVQRWGFLPHVAPRGAEAG*QGGAPP
Trigger: TGGGGGTGCACCTCCCTGGCAACCCGCTTCTGCGCC...CCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCTTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp AGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGGGGATCCCGAGAGCCCGCTaGCTCCTCGTCCTCCTCGTC +
Preference number: 4 (lower is better)
Translates to: RRVAVQRWGFLPHVAPRGIPRAR*LLVLLV
Trigger: GACGAGGAGGACGAGGAGGCAGCGGGCTCTCGGGAT...CCCCCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp GGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAGGAAGGAGACCATCTTaGGCTTCCTCTCCAGCTCGC +
Preference number: 4 (lower is better)
Translates to: GPHGARRDLCCARGLWAQGRRPS*ASSPAR
Trigger: GCGAGCTGGAGAGGAAGCGCAAGATGGTCTCCTTCC...TTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAGGAAGGAGACCATCTTaGGCTTCCTCTCCAGCTCGC +
Preference number: 4 (lower is better)
Translates to: WPSWGQERPLLCQGALGPGRRPS*ASSPAR
Trigger: GCGAGCTGGAGAGGAAGCGCAAGATGGTCTCCTTCC...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCGGAAGGAGACCATCTTaGGCTTCCTCTCCAGCTCGC +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGGRRPS*ASSPAR
Trigger: GCGAGCTGGAGAGGAAGCGCAAGATGGTCTCCTTCC...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAGGGATTGGATGGATTaGTATGGGGCGCAGGAGGCG +
Preference number: 4 (lower is better)
Translates to: GPHGARRDLCCARGLWAQRDWMD*YGAQEA
Trigger: CGCCTCCTGCGCCCCATACCAATCCATCCAATCCCT...TTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAGGTCCAATCTCTGGTaGCCTCTCCGTGTTCCTGGG +
Preference number: 4 (lower is better)
Translates to: GPHGARRDLCCARGLWAQRSNLW*PLRVPG
Trigger: CCCAGGAACACGGAGAGGCCACCAGAGATTGGACCT...TTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGATCAGGGGACTCATCTaGGGGGCTGGGTGGAGGGCC +
Preference number: 4 (lower is better)
Translates to: VPEASGPHGARRDLCCARIRGLI*GAGWRA
Trigger: GGCCCTCCACCCAGCCCCCCAGATGAGTCCCCTGAT...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCGCTGGCAGAACTCCATaGTCAACAGGAAGGGCAAGG +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGAGRTP*STGRAR
Trigger: CCTTGCCCTTCCTGTTGATCATGGAGTTCTGCCAGC...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCGGGAGAGTTTGGCTTTaGTCTGCTCGCTGTTCCCCT +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGGRVWL*SARCSP
Trigger: AGGGGAACAGCGAGCAGATCAAAGCCAAACTCTCCC...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGCAGCAGCTCGGGCGCTaGCCAGCGCAGCGGCACCCA +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVQQLGR*PAQRHP
Trigger: TGGGTGCCGCTGCGCTGGGCAGCGCCCGAGCTGCTG...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGTGCCAGGGTCTCTCCTaGGCCCCGGCCCTCGGGGTC +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVCQGLS*APALGV
Trigger: GACCCCGAGGGCCGGGGCGCAGGAGAGACCCTGGCA...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGACCTGATCCCGAGGACTaGGCCGGGAAGGGTCGGGGC +
Preference number: 4 (lower is better)
Translates to: LPRGCVSVRGNGSIVHTRPDPED*AGKGRG
Trigger: GCCCCGACCCTTCCCGGCCCAGTCCTCGGGATCAGG...TCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp AGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGGGGGCTGCTGTCCTCGCCTaGGGAGCTCTCTTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: RRVAVQRWGFLPHVAPRGAAVLA*GALFLL
Trigger: GAGGAGGAAGAGAGCTCCCCAGGCGAGGACAGCAGC...CCCCCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCT
64% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGCCTCTCCGTGTTCCTaGGCAGCCTCAGGACCCCAT +
Preference number: 4 (lower is better)
Translates to: VPEASGPHGARRDLCCARASPCS*AASGPH
Trigger: ATGGGGTCCTGAGGCTGCCCAGGAACACGGAGAGGC...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCCTCGGTCCCGGGGTCTaGGTTCCCGCTCTTGGGGGC +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSLGPGV*VPALGG
Trigger: GCCCCCAAGAGCGGGAACCCAGACCCCGGGACCGAG...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCAAGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGCCTGGCTCTTCCTCTTaGGCCACCTCCGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: PRRVAVQRWGFLPHVAPRPGSSS*ATSGLA
Trigger: AGCCAGGCCGGAGGTGGCCCAAGAGGAAGAGCCAGG...CCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCTTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGTTGTCTGGGACCCCTaGCTCTTCCTCTTGGGCCAC +
Preference number: 4 (lower is better)
Translates to: PSWGQERPLLCQGALGPKVVWDP*LFLLGH
Trigger: GTGGCCCAAGAGGAAGAGCCAGGGGTCCCAGACAAC...TTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCCGTGAGCGTGAGCGGTaGGAGCGCCAGCGAGAGCCG +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSRERER*ERQREP
Trigger: CGGCTCTCGCTGGCGCTCCCACCGCTCACGCTCACG...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCTCGTCGGCCGCGCGTaGAGACTTGAGCAGCCCCCG +
Preference number: 4 (lower is better)
Translates to: PLLCQGALGPKEFGSVQFLVGRA*RLEQPP
Trigger: CGGGGGCTGCTCAAGTCTCCACGCGCGGCCGACGAG...GAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCATCTCCTGGGGTGGTaGGGTGGGGAGGCGTCGGGG +
Preference number: 4 (lower is better)
Translates to: PLLCQGALGPKEFGSVQFHLLGW*GGEASG
Trigger: CCCCGACGCCTCCCCACCCCACCACCCCAGGAGATG...GAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCAGTGTCAGGGGCAATaGCTCCATCGTCCACACAAG +
Preference number: 4 (lower is better)
Translates to: QWPSWGQERPLLCQGALGQCQGQ*LHRPHK
Trigger: CTTGTGTGGACGATGGAGCCATTGCCCCTGACACTG...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp CCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCGGGGGTGCTGATGTCTaGGTGTGGAGGCTGCGGGGC +
Preference number: 4 (lower is better)
Translates to: PLLCQGALGPKEFGSVQFGGADV*VWRLRG
Trigger: GCCCCGCAGCCTCCACACTCAGACATCAGCACCCCC...GAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCGGGGGTGCTGATGTCTaGGTGTGGAGGCTGCGGGGC +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSGGADV*VWRLRG
Trigger: GCCCCGCAGCCTCCACACTCAGACATCAGCACCCCC...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp CCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGGACTTTCTTCCTGCTaGCCAGGGATGTCAGGTCCC +
Preference number: 4 (lower is better)
Translates to: PSWGQERPLLCQGALGPKGLSSC*PGMSGP
Trigger: GGGACCTGACATCCCTGGTCAGCAGGAAGAAAGTCC...TTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCGGCGCAGAAGCGGGTTaGCAGGGAGGTGCACCCCCA +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSGAEAG*QGGAPP
Trigger: TGGGGGTGCACCTCCCTGGCAACCCGCTTCTGCGCC...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCTGTCCCCGTCGGCGCTaGTCACCACGACGGGCACTG +
Preference number: 4 (lower is better)
Translates to: PLLCQGALGPKEFGSVQFCPRRR*SPRRAL
Trigger: CAGTGCCCGTCGTGGTGAGCAGCGCCGACGGGGACA...GAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCAAGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGGGACATGCCTTCAGGTaGCCGCTGGGCCCGAAGGTA +
Preference number: 4 (lower is better)
Translates to: PRRVAVQRWGFLPHVAPRGHAFR*PLGPKV
Trigger: TACCTTCGGGCCCAGCGGCCACCTGAAGGCATGTCC...CCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCTTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAAGCTTCACGTGCTGCTaGCGGACAACAAAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: PSWGQERPLLCQGALGPKSFTCC*RTTKAR
Trigger: CCTGGCCTTTGTTGTCCGCCAGCAGCACGTGAAGCT...TTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGAAGCTGAGGGGCGCTaGGCTGGCGGCCGCCAGCAA +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVEAEGR*AGGRQQ
Trigger: TTGCTGGCGGCCGCCAGCCCAGCGCCCCTCAGCTTC...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGAGTGGAGGAGGGGGCCTaGGGGGCCGCTCAGACAGCA +
Preference number: 4 (lower is better)
Translates to: AVPGGSGPKRVRFSSVPRVEEGA*GAAQTA
Trigger: TGCTGTCTGAGCGGCCCCCCAGGCCCCCTCCTCCAC...TCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAAGGGATTGGATGGATTaGTATGGGGCGCAGGAGGCG +
Preference number: 4 (lower is better)
Translates to: PSWGQERPLLCQGALGPKRDWMD*YGAQEA
Trigger: CGCCTCCTGCGCCCCATACCAATCCATCCAATCCCT...TTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGAGGGACCGGGTACTCCTaGGTCCAGCGGGTCCCAGTC +
Preference number: 4 (lower is better)
Translates to: LPRGCVSVRGNGSIVHTRGTGYS*VQRVPV
Trigger: GACTGGGACCCGCTGGACCCAGGAGTACCCGGTCCC...TCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCGGGACCGGGTACTCCTaGGTCCAGCGGGTCCCAGTC +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSGTGYS*VQRVPV
Trigger: GACTGGGACCCGCTGGACCCAGGAGTACCCGGTCCC...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTCTCGGTCCCGGGGTCTaGGTTCCCGCTCTTGGGGGC +
Preference number: 4 (lower is better)
Translates to: ARGLWAQKSSVQFSSKTCLGPGV*VPALGG
Trigger: GCCCCCAAGAGCGGGAACCCAGACCCCGGGACCGAG...ACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCTGTTGGGCCCCCAGTaGCTGTGGCGGAGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: PLLCQGALGPKEFGSVQFLLGPQ*LWRRWQ
Trigger: CTGCCACCTCCGCCACAGCCACTGGGGGCCCAACAG...GAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCCTGTTGGGCCCCCAGTaGCTGTGGCGGAGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSLLGPQ*LWRRWQ
Trigger: CTGCCACCTCCGCCACAGCCACTGGGGGCCCAACAG...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTCACCACGACGGGCACTaGGGCTTCCCGCGTCCTCCC +
Preference number: 4 (lower is better)
Translates to: ARGLWAQKSSVQFSSKTCHHDGH*GFPRPP
Trigger: GGGAGGACGCGGGAAGCCCCAGTGCCCGTCGTGGTG...ACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAACACCACGACGGGCACTaGGGCTTCCCGCGTCCTCCC +
Preference number: 4 (lower is better)
Translates to: LLCQGALGPKEFGSVQFQHHDGH*GFPRPP
Trigger: GGGAGGACGCGGGAAGCCCCAGTGCCCGTCGTGGTG...TTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGATCACCACGACGGGCACTaGGGCTTCCCGCGTCCTCCC +
Preference number: 4 (lower is better)
Translates to: SPEAVSVSGAMAPSSTQDHHDGH*GFPRPP
Trigger: GGGAGGACGCGGGAAGCCCCAGTGCCCGTCGTGGTG...ATCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAGCTCAACTCGTTGGTTaGAGTCTCCTGGTCGAAGAG +
Preference number: 4 (lower is better)
Translates to: WPSWGQERPLLCQGALGPAQLVG*SLLVEE
Trigger: CTCTTCGACCAGGAGACTCCAACCAACGAGTTGAGC...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAACATCTCCTGGGGTGGTaGGGTGGGGAGGCGTCGGGG +
Preference number: 4 (lower is better)
Translates to: LLCQGALGPKEFGSVQFQHLLGW*GGEASG
Trigger: CCCCGACGCCTCCCCACCCCACCACCCCAGGAGATG...TTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACATCTCCTGGGGTGGTaGGGTGGGGAGGCGTCGGGG +
Preference number: 4 (lower is better)
Translates to: AVPGGSGPKRVRFSSVPRHLLGW*GGEASG
Trigger: CCCCGACGCCTCCCCACCCCACCACCCCAGGAGATG...TCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp AGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCCTGGAGATCAGAAGCTaGGGGGCGCTGGGCTGGCGG +
Preference number: 4 (lower is better)
Translates to: RGLWAQKSSVQFSSKTCGLEIRS*GALGWR
Trigger: CCGCCAGCCCAGCGCCCCTCAGCTTCTGATCTCCAG...GCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp CCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCGTCTCGGACACCAGCTaGGGGACCTCGGAGGGAGTC +
Preference number: 4 (lower is better)
Translates to: PLLCQGALGPKEFGSVQFVSDTS*GTSEGV
Trigger: GACTCCCTCCGAGGTCCCTCAGCTGGTGTCCGAGAC...GAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCGTCTCGGACACCAGCTaGGGGACCTCGGAGGGAGTC +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSVSDTS*GTSEGV
Trigger: GACTCCCTCCGAGGTCCCTCAGCTGGTGTCCGAGAC...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGCGAATCCATCCGGGTaGGCTGGGGACGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDANPSG*AGDARQ
Trigger: CTGCCTGGCGTCCCCAGCGCACCCGGATGGATTCGC...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp AGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCGCGAATCCATCCGGGTaGGCTGGGGACGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: RGLWAQKSSVQFSSKTCGANPSG*AGDARQ
Trigger: CTGCCTGGCGTCCCCAGCGCACCCGGATGGATTCGC...GCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAACAGCAGCTCGGGCGCTaGCCAGCGCAGCGGCACCCA +
Preference number: 4 (lower is better)
Translates to: GSIVHTRFCSQALFLGCKQQLGR*PAQRHP
Trigger: TGGGTGCCGCTGCGCTGGGCAGCGCCCGAGCTGCTG...TTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGGCGCAGAAGCGGGTTaGCAGGGAGGTGCACCCCCA +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVGAEAG*QGGAPP
Trigger: TGGGGGTGCACCTCCCTGGCAACCCGCTTCTGCGCC...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTAGGGACCCTCGCGGCTaGACAAGGGACAGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: ARGLWAQKSSVQFSSKTCRDPRG*TRDRGG
Trigger: CCCTCCCCTGTCCCTTGTGCAGCCGCGAGGGTCCCT...ACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCTACCCATCCGGCCTTTaGGTCCACGGCGCTTGCGGG +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSYPSGL*VHGACG
Trigger: CCCGCAAGCGCCGTGGACGCAAAGGCCGGATGGGTA...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGATGTCCCCGTCGGCGCTaGTCACCACGACGGGCACTG +
Preference number: 4 (lower is better)
Translates to: AVPGGSGPKRVRFSSVPRCPRRR*SPRRAL
Trigger: CAGTGCCCGTCGTGGTGAGCAGCGCCGACGGGGACA...TCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCGCCGGAAGCGCGGACTaGCGCCCTCGGCGAGGATGT +
Preference number: 4 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVAGSAD*RPRRGC
Trigger: ACATCCTCGCCGAGGGCGGCAGTCCGCGCTTCCGGC...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCGAAGCTGAGGGGCGCTaGGCTGGCGGCCGCCAGCAA +
Preference number: 4 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVEAEGR*AGGRQQ
Trigger: TTGCTGGCGGCCGCCAGCCCAGCGCCCCTCAGCTTC...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCCTGATCCCGAGGACTaGGCCGGGAAGGGTCGGGGC +
Preference number: 4 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVPDPED*AGKGRG
Trigger: GCCCCGACCCTTCCCGGCCCAGTCCTCGGGATCAGG...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAACTTCTCCTGGGACCCTaGGAGTGGGAGGGGACCCGG +
Preference number: 4 (lower is better)
Translates to: LLCQGALGPKEFGSVQFQLLLGP*EWEGTR
Trigger: CCGGGTCCCCTCCCACTCCCAGGGTCCCAGGAGAAG...TTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGAGGTCCAATCTCTGGTaGCCTCTCCGTGTTCCTGGG +
Preference number: 4 (lower is better)
Translates to: VPEASGPHGARRDLCCARRSNLW*PLRVPG
Trigger: CCCAGGAACACGGAGAGGCCACCAGAGATTGGACCT...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGCCGAGGTCCAATCTCTaGTGGCCTCTCCGTGTTCCT +
Preference number: 4 (lower is better)
Translates to: VPEASGPHGARRDLCCARPRSNL*WPLRVP
Trigger: AGGAACACGGAGAGGCCACCAGAGATTGGACCTCGG...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGGGCTGGGCCAAGCTaGCCAGGGGCCATCTCCAAG +
Preference number: 4 (lower is better)
Translates to: ARGLWAQKSSVQFSSKTCGAGPS*PGAISK
Trigger: CTTGGAGATGGCCCCTGGCCAGCTTGGCCCAGCCCC...ACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCAAGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGTGGCTGTGGCGGAGGTaGCAGTGGTCTCGAGTTGTC +
Preference number: 4 (lower is better)
Translates to: PRRVAVQRWGFLPHVAPRWLWRR*QWSRVV
Trigger: GACAACTCGAGACCACTGCCACCTCCGCCACAGCCA...CCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCTTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGGCCCCCAGTGGCTGTaGCGGAGGTGGCAGTGGTCT +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVGPQWL*RRWQWS
Trigger: AGACCACTGCCACCTCCGCCACAGCCACTGGGGGCC...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGATGGGCCACCTCCGGCCTaGCTTTCAGGGGCACTGGCT +
Preference number: 4 (lower is better)
Translates to: SPEAVSVSGAMAPSSTQDGPPPA*LSGALA
Trigger: AGCCAGTGCCCCTGAAAGCCAGGCCGGAGGTGGCCC...ATCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CTCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGAGGTCCTCGTCTACGCTaGGGGCCATGTCTCCGCCGA +
Preference number: 4 (lower is better)
Translates to: LPRGCVSVRGNGSIVHTRGPRLR*GPCLRR
Trigger: TCGGCGGAGACATGGCCCCCAGCGTAGACGAGGACC...TCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCACCACGACGGGCACTaGGGCTTCCCGCGTCCTCCC +
Preference number: 4 (lower is better)
Translates to: GLWAQKSSVQFSSKTCGCHHDGH*GFPRPP
Trigger: GGGAGGACGCGGGAAGCCCCAGTGCCCGTCGTGGTG...ACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TGGCCGCTGGGCCCGAAGGTATCGCTTCAGGTCCCCCAGCTGGCAGAACTCCATTGCACGCGGGACGGATaGAAGGATGGACAGACTGAC +
Preference number: 4 (lower is better)
Translates to: WPLGPKVSLQVPQLAELHCTRDG*KDGQTD
Trigger: GTCAGTCTGTCCATCCTTCCATCCGTCCCGCGTGCA...ATGGAGTTCTGCCAGCTGGGGGACCTGAAGCGATACCTTCGGGCCCAGCGGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000209351.2
CDS-3UTR TCA 90 bp TGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGGGCAGGCATTGGCAGTaGGACCTCTGCCAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: CARGLWAQKSSVQFSSKTGRHWQ*DLCQRQ
Trigger: CTGCCGCTGGCAGAGGTCTCACTGCCAATGCCTGCC...CGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp TCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGGCTGGGGGGTGCTGATGTCTaGGTGTGGAGGCTGCGGGGC +
Preference number: 4 (lower is better)
Translates to: SSTQDSARKPSSWDAKGLGGADV*VWRLRG
Trigger: GCCCCGCAGCCTCCACACTCAGACATCAGCACCCCC...CAGCCCCTTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGA
61% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR TCA 90 bp GCAGAACTCCATGATCAACAGGAAGGGCAAGGTCTCCACACAGACGCCCAGGCATCTCCTGCAGGTAGCTaGGGTGCTGGCGGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: AELHDQQEGQGLHTDAQASPAGS*GAGGSG
Trigger: GCCTGAGCCGCCAGCACCTCAGCTACCTGCAGGAGA...TGCCTGGGCGTCTGTGTGGAGACCTTGCCCTTCCTGTTGATCATGGAGTTCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209351.2
CDS-3UTR TCA 90 bp TCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGGCTGCTGGAGATCAGAAGCTaGGGGGCGCTGGGCTGGCGG +
Preference number: 4 (lower is better)
Translates to: SSTQDSARKPSSWDAKGLLEIRS*GALGWR
Trigger: CCGCCAGCCCAGCGCCCCTCAGCTTCTGATCTCCAG...CAGCCCCTTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR TCA 90 bp AGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGGGGGGGAGAGTTTGGCTTTaGTCTGCTCGCTGTTCCCCT +
Preference number: 4 (lower is better)
Translates to: RRVAVQRWGFLPHVAPRGGRVWL*SARCSP
Trigger: AGGGGAACAGCGAGCAGATCAAAGCCAAACTCTCCC...CCCCCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCT
61% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp GGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTGCGAATCCATCCGGGTaGGCTGGGGACGCCAGGCAG +
Preference number: 4 (lower is better)
Translates to: GLWAQKSSVQFSSKTCGCANPSG*AGDARQ
Trigger: CTGCCTGGCGTCCCCAGCGCACCCGGATGGATTCGC...ACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACTCGGCAGGATCTCCTaGCAGGGTCTCTCCTGCGCC +
Preference number: 4 (lower is better)
Translates to: AVPGGSGPKRVRFSSVPRLGRIS*QGLSCA
Trigger: GGCGCAGGAGAGACCCTGGCAGGAGATCCTGCCGAG...TCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACCTCGGCAGGATCTCCTaGCAGGGTCTCTCCTGCGCC +
Preference number: 4 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDLGRIS*QGLSCA
Trigger: GGCGCAGGAGAGACCCTGGCAGGAGATCCTGCCGAG...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGCTCGGCAGGATCTCCTaGCAGGGTCTCTCCTGCGCC +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVLGRIS*QGLSCA
Trigger: GGCGCAGGAGAGACCCTGGCAGGAGATCCTGCCGAG...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp TGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTACCCATCCGGCCTTTaGGTCCACGGCGCTTGCGGG +
Preference number: 4 (lower is better)
Translates to: CARGLWAQKSSVQFSSKTYPSGL*VHGACG
Trigger: CCCGCAAGCGCCGTGGACGCAAAGGCCGGATGGGTA...CGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp TCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGATATCCCGAGAGCCCGCTaGCTCCTCGTCCTCCTCGTC +
Preference number: 4 (lower is better)
Translates to: SPEAVSVSGAMAPSSTQDIPRAR*LLVLLV
Trigger: GACGAGGAGGACGAGGAGGCAGCGGGCTCTCGGGAT...ATCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCTGTCCCCGTCGGCGCTaGTCACCACGACGGGCACTG +
Preference number: 4 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVCPRRR*SPRRAL
Trigger: CAGTGCCCGTCGTGGTGAGCAGCGCCGACGGGGACA...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp AGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCCCCTCGGGGGTaGCCTGGACGCTCAACTCGT +
Preference number: 4 (lower is better)
Translates to: RGLWAQKSSVQFSSKTCGCPPRG*PGRSTR
Trigger: ACGAGTTGAGCGTCCAGGGCACCCCCGAGGGGGACA...GCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTTGTCCCCCTCGGGGGTaGCCTGGACGCTCAACTCGT +
Preference number: 4 (lower is better)
Translates to: ARGLWAQKSSVQFSSKTCCPPRG*PGRSTR
Trigger: ACGAGTTGAGCGTCCAGGGCACCCCCGAGGGGGACA...ACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGAAGCTGAGGGGCGCTaGGCTGGCGGCCGCCAGCAA +
Preference number: 4 (lower is better)
Translates to: GSIVHTRFCSQALFLGCKEAEGR*AGGRQQ
Trigger: TTGCTGGCGGCCGCCAGCCCAGCGCCCCTCAGCTTC...TTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAGTGGAGGAGGGGGCCTaGGGGGCCGCTCAGACAGCA +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQVEEGA*GAAQTA
Trigger: TGCTGTCTGAGCGGCCCCCCAGGCCCCCTCCTCCAC...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCTCCAGAAGGGGGAACTaGGAGGACAGGGTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSSRRGN*EDRVPG
Trigger: CCCAGGGACCCTGTCCTCCCAGTTCCCCCTTCTGGA...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCGGGGAAGAGGGGCTCTaGTGGAGAACCGTGCTCCTC +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSGEEGL*WRTVLL
Trigger: GAGGAGCACGGTTCTCCACCAGAGCCCCTCTTCCCC...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTGGGACCGGGTACTCCTaGGTCCAGCGGGTCCCAGTC +
Preference number: 4 (lower is better)
Translates to: GLWAQKSSVQFSSKTCGCGTGYS*VQRVPV
Trigger: GACTGGGACCCGCTGGACCCAGGAGTACCCGGTCCC...ACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAACGCTGTCCCCCGGCTTaGGGCCCGGAGACGATAGGC +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQRCPPA*GPETIG
Trigger: GCCTATCGTCTCCGGGCCCCAAGCCGGGGGACAGCG...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCTTCTCCTGGGACCCTaGGAGTGGGAGGGGACCCGG +
Preference number: 4 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVLLLGP*EWEGTR
Trigger: CCGGGTCCCCTCCCACTCCCAGGGTCCCAGGAGAAG...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCGTCCCTGTTCGGGCCTaGGCCCTTCTCTCTGTTCGC +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSVPVRA*ALLSVR
Trigger: GCGAACAGAGAGAAGGGCCCAGGCCCGAACAGGGAC...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CTCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGAGTCCCTGTTCGGGCCTaGGCCCTTCTCTCTGTTCGC +
Preference number: 4 (lower is better)
Translates to: LPRGCVSVRGNGSIVHTRVPVRA*ALLSVR
Trigger: GCGAACAGAGAGAAGGGCCCAGGCCCGAACAGGGAC...TCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CCAAGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGCATGTCCGGGACTCCTaGCTTCCCGTTCTCCAACAC +
Preference number: 4 (lower is better)
Translates to: PRRVAVQRWGFLPHVAPRHVRDS*LPVLQH
Trigger: GTGTTGGAGAACGGGAAGCCAGGAGTCCCGGACATG...CCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CTCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGACTTCTCCCCGGCCTCTaGGGACATCGGCTCCCCATT +
Preference number: 4 (lower is better)
Translates to: LPRGCVSVRGNGSIVHTRLLPGL*GHRLPI
Trigger: AATGGGGAGCCGATGTCCCCAGAGGCCGGGGAGAAG...TCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CCAAGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGAGGTCCAATCTCTGGTaGCCTCTCCGTGTTCCTGGG +
Preference number: 4 (lower is better)
Translates to: PRRVAVQRWGFLPHVAPRRSNLW*PLRVPG
Trigger: CCCAGGAACACGGAGAGGCCACCAGAGATTGGACCT...CCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCTTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTGGGGCTGGGCCAAGCTaGCCAGGGGCCATCTCCAAG +
Preference number: 4 (lower is better)
Translates to: GLWAQKSSVQFSSKTCGCGAGPS*PGAISK
Trigger: CTTGGAGATGGCCCCTGGCCAGCTTGGCCCAGCCCC...ACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCGGGGCTGGGCCAAGCTaGCCAGGGGCCATCTCCAAG +
Preference number: 4 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVGAGPS*PGAISK
Trigger: CTTGGAGATGGCCCCTGGCCAGCTTGGCCCAGCCCC...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGGCTGGGCCCCCAGTGGCTGTaGCGGAGGTGGCAGTGGTCT +
Preference number: 4 (lower is better)
Translates to: SSTQDSARKPSSWDAKGLGPQWL*RRWQWS
Trigger: AGACCACTGCCACCTCCGCCACAGCCACTGGGGGCC...CAGCCCCTTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGAGGCCCCCAGTGGCTGTaGCGGAGGTGGCAGTGGTCT +
Preference number: 4 (lower is better)
Translates to: GPKRVRFSSVPRRVAVQRGPQWL*RRWQWS
Trigger: AGACCACTGCCACCTCCGCCACAGCCACTGGGGGCC...TCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGAGGGCCACCTCCGGCCTaGCTTTCAGGGGCACTGGCT +
Preference number: 4 (lower is better)
Translates to: GPKRVRFSSVPRRVAVQRGPPPA*LSGALA
Trigger: AGCCAGTGCCCCTGAAAGCCAGGCCGGAGGTGGCCC...TCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp AGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGGGGGCTGTTCCCCTGAGGTaGTCCCAAGTCCAGGAACAA +
Preference number: 4 (lower is better)
Translates to: RRVAVQRWGFLPHVAPRGAVPLR*SQVQEQ
Trigger: TTGTTCCTGGACTTGGGACCACCTCAGGGGAACAGC...CCCCCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCT
61% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATCGTGAGCGTGAGCGGTaGGAGCGCCAGCGAGAGCCG +
Preference number: 4 (lower is better)
Translates to: GPKEFGSVQFQDVWLSSDRERER*ERQREP
Trigger: CGGCTCTCGCTGGCGCTCCCACCGCTCACGCTCACG...ATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp CTCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGAGACCCGAACAGGAAATaGGGACCACAGCGTAGGGCG +
Preference number: 4 (lower is better)
Translates to: LPRGCVSVRGNGSIVHTRDPNRK*GPQRRA
Trigger: CGCCCTACGCTGTGGTCCTCATTTCCTGTTCGGGTC...TCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR TCA 90 bp GGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTGGCAGGCATTGGCAGTaGGACCTCTGCCAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: GLWAQKSSVQFSSKTCGCGRHWQ*DLCQRQ
Trigger: CTGCCGCTGGCAGAGGTCTCACTGCCAATGCCTGCC...ACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCGGCAGGCATTGGCAGTaGGACCTCTGCCAGCGGCAG +
Preference number: 4 (lower is better)
Translates to: ALGPKEFGSVQFQDVWLSGRHWQ*DLCQRQ
Trigger: CTGCCGCTGGCAGAGGTCTCACTGCCAATGCCTGCC...GGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCTCTCCTGCAGGTAGCTaGGGTGCTGGCGGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: ALGPKEFGSVQFQDVWLSSPAGS*GAGGSG
Trigger: GCCTGAGCCGCCAGCACCTCAGCTACCTGCAGGAGA...GGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGCTGGAGATCAGAAGCTaGGGGGCGCTGGGCTGGCGG +
Preference number: 4 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGLEIRS*GALGWR
Trigger: CCGCCAGCCCAGCGCCCCTCAGCTTCTGATCTCCAG...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp GGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGAGTCTCGGACACCAGCTaGGGGACCTCGGAGGGAGTC +
Preference number: 4 (lower is better)
Translates to: GPKRVRFSSVPRRVAVQRVSDTS*GTSEGV
Trigger: GACTCCCTCCGAGGTCCCTCAGCTGGTGTCCGAGAC...TCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAACTACCAGCACGAAGCTaGCGTGCAGCTCGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: LLCQGALGPKEFGSVQFQLPARS*RAARPA
Trigger: TGCTGGGCGAGCTGCACGGCAGCTTCGTGCTGGTAG...TTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTCTACCAGCACGAAGCTaGCGTGCAGCTCGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: ARGLWAQKSSVQFSSKTCLPARS*RAARPA
Trigger: TGCTGGGCGAGCTGCACGGCAGCTTCGTGCTGGTAG...ACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAGGCGCAGAAGCGGGTTaGCAGGGAGGTGCACCCCCA +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQGAEAG*QGGAPP
Trigger: TGGGGGTGCACCTCCCTGGCAACCCGCTTCTGCGCC...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCTCGGCAGGATCTCCTaGCAGGGTCTCTCCTGCGCC +
Preference number: 4 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVLGRIS*QGLSCA
Trigger: GGCGCAGGAGAGACCCTGGCAGGAGATCCTGCCGAG...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGACCCTCGCGGCTaGACAAGGGACAGGGGAGGG +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQRDPRG*TRDRGG
Trigger: CCCTCCCCTGTCCCTTGTGCAGCCGCGAGGGTCCCT...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACCGCCAGGAGGATGAGTaGGCCGGGTGCAGGCATCTT +
Preference number: 4 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDRQEDE*AGCRHL
Trigger: AAGATGCCTGCACCCGGCGCACTCATCCTCCTGGCG...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGTCCAGAAGGGGGAACTaGGAGGACAGGGTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVSRRGN*EDRVPG
Trigger: CCCAGGGACCCTGTCCTCCCAGTTCCCCCTTCTGGA...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp AGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTCCAGAAGGGGGAACTaGGAGGACAGGGTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: RGLWAQKSSVQFSSKTCGSRRGN*EDRVPG
Trigger: CCCAGGGACCCTGTCCTCCCAGTTCCCCCTTCTGGA...GCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCGAAGAGGGGCTCTGGTaGAGAACCGTGCTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: PLLCQGALGPKEFGSVQFEEGLW*RTVLLQ
Trigger: CTGGAGGAGCACGGTTCTCCACCAGAGCCCCTCTTC...GAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGGGGAAGAGGGGCTCTaGTGGAGAACCGTGCTCCTC +
Preference number: 4 (lower is better)
Translates to: LLCQGALGPKEFGSVQFQGEEGL*WRTVLL
Trigger: GAGGAGCACGGTTCTCCACCAGAGCCCCTCTTCCCC...TTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAGGGACCGGGTACTCCTaGGTCCAGCGGGTCCCAGTC +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQGTGYS*VQRVPV
Trigger: GACTGGGACCCGCTGGACCCAGGAGTACCCGGTCCC...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp TCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGATGCTGCTGTCCTCGCCTaGGGAGCTCTCTTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: SPEAVSVSGAMAPSSTQDAAVLA*GALFLL
Trigger: GAGGAGGAAGAGAGCTCCCCAGGCGAGGACAGCAGC...ATCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCGGAAGAGTCGTCCTCTaGGGGGTGGGGACAACCAAG +
Preference number: 4 (lower is better)
Translates to: PLLCQGALGPKEFGSVQFGRVVL*GVGTTK
Trigger: CTTGGTTGTCCCCACCCCCCAGAGGACGACTCTTCC...GAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGCTTCTCCCCGGCCTCTaGGGACATCGGCTCCCCATT +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVLLPGL*GHRLPI
Trigger: AATGGGGAGCCGATGTCCCCAGAGGCCGGGGAGAAG...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGGCTGGGCCAAGCTaGCCAGGGGCCATCTCCAAG +
Preference number: 4 (lower is better)
Translates to: GSIVHTRFCSQALFLGCKGAGPS*PGAISK
Trigger: CTTGGAGATGGCCCCTGGCCAGCTTGGCCCAGCCCC...TTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAACTGTTGGGCCCCCAGTaGCTGTGGCGGAGGTGGCAG +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQLLGPQ*LWRRWQ
Trigger: CTGCCACCTCCGCCACAGCCACTGGGGGCCCAACAG...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGGCTTTCAGGGGCACTaGCTCCGGCCTCCTCTGTTG +
Preference number: 4 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDGFQGH*LRPPLL
Trigger: CAACAGAGGAGGCCGGAGCCAGTGCCCCTGAAAGCC...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp AGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCGGCTTTCAGGGGCACTaGCTCCGGCCTCCTCTGTTG +
Preference number: 4 (lower is better)
Translates to: RGLWAQKSSVQFSSKTCGGFQGH*LRPPLL
Trigger: CAACAGAGGAGGCCGGAGCCAGTGCCCCTGAAAGCC...GCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGCCACCTCCGGCCTaGCTTTCAGGGGCACTGGCT +
Preference number: 4 (lower is better)
Translates to: GSIVHTRFCSQALFLGCKGPPPA*LSGALA
Trigger: AGCCAGTGCCCCTGAAAGCCAGGCCGGAGGTGGCCC...TTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGACCTGGCTCTTCCTCTTaGGCCACCTCCGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: GPKRVRFSSVPRRVAVQRPGSSS*ATSGLA
Trigger: AGCCAGGCCGGAGGTGGCCCAAGAGGAAGAGCCAGG...TCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTGGTCCTCGTCTACGCTaGGGGCCATGTCTCCGCCGA +
Preference number: 4 (lower is better)
Translates to: GLWAQKSSVQFSSKTCGCGPRLR*GPCLRR
Trigger: TCGGCGGAGACATGGCCCCCAGCGTAGACGAGGACC...ACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGCATCTTGTCCAGGATaGAAGGGAGGTGGAGGAATC +
Preference number: 4 (lower is better)
Translates to: VPEASGPHGARRDLCCARASCPG*KGGGGI
Trigger: GATTCCTCCACCTCCCTTCCATCCTGGACAAGATGC...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CAGATCGCTGTGCACATAGTTGTGAGAGTGCAGGTGTGCCAGTCCTCGGGCAATGCGTGGAGAGCCGGGTaGCGAGGCGGAGTGGTCAAT +
Preference number: 4 (lower is better)
Translates to: QIAVHIVVRVQVCQSSGNAWRAG*RGGVVN
Trigger: ATTGACCACTCCGCCTCGCCACCCGGCTCTCCACGC...ATTGCCCGAGGACTGGCACACCTGCACTCTCACAACTATGTGCACAGCGATCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209351.2
CDS-3UTR TCA 90 bp GCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGACCCGAACAGGAAATaGGGACCACAGCGTAGGGCG +
Preference number: 4 (lower is better)
Translates to: ARGLWAQKSSVQFSSKTCDPNRK*GPQRRA
Trigger: CGCCCTACGCTGTGGTCCTCATTTCCTGTTCGGGTC...ACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAATCTCCTGCAGGTAGCTaGGGTGCTGGCGGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQSPAGS*GAGGSG
Trigger: GCCTGAGCCGCCAGCACCTCAGCTACCTGCAGGAGA...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR TCA 90 bp GGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAATCTCCTGCAGGTAGCTaGGGTGCTGGCGGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: GSIVHTRFCSQALFLGCKSPAGS*GAGGSG
Trigger: GCCTGAGCCGCCAGCACCTCAGCTACCTGCAGGAGA...TTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR TCA 90 bp CCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCGGACTTTCTTCCTGCTaGCCAGGGATGTCAGGTCCC +
Preference number: 4 (lower is better)
Translates to: PLLCQGALGPKEFGSVQFGLSSC*PGMSGP
Trigger: GGGACCTGACATCCCTGGTCAGCAGGAAGAAAGTCC...GAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR TCA 90 bp CTCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGAGGACTTTCTTCCTGCTaGCCAGGGATGTCAGGTCCC +
Preference number: 4 (lower is better)
Translates to: LPRGCVSVRGNGSIVHTRGLSSC*PGMSGP
Trigger: GGGACCTGACATCCCTGGTCAGCAGGAAGAAAGTCC...TCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR TCA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCTGCTCGCTGTTCCCCTaGGGTGGTCCCAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: ALGPKEFGSVQFQDVWLSCSLFP*GGPKSR
Trigger: CCTGGACTTGGGACCACCTCAGGGGAACAGCGAGCA...GGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp GGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTTGCTCGCTGTTCCCCTaGGGTGGTCCCAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: GLWAQKSSVQFSSKTCGCCSLFP*GGPKSR
Trigger: CCTGGACTTGGGACCACCTCAGGGGAACAGCGAGCA...ACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAACGGGCCAGCTTCACGTaGTGCTGGCGGACAACAAAG +
Preference number: 4 (lower is better)
Translates to: LLCQGALGPKEFGSVQFQRASFT*CWRTTK
Trigger: CTTTGTTGTCCGCCAGCAGCACGTGAAGCTGGCCCG...TTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGCGGGCCAGCTTCACGTaGTGCTGGCGGACAACAAAG +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVRASFT*CWRTTK
Trigger: CTTTGTTGTCCGCCAGCAGCACGTGAAGCTGGCCCG...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGTACCCATCCGGCCTTTaGGTCCACGGCGCTTGCGGG +
Preference number: 4 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGYPSGL*VHGACG
Trigger: CCCGCAAGCGCCGTGGACGCAAAGGCCGGATGGGTA...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAATACCCATCCGGCCTTTaGGTCCACGGCGCTTGCGGG +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQYPSGL*VHGACG
Trigger: CCCGCAAGCGCCGTGGACGCAAAGGCCGGATGGGTA...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAATCCCGAGAGCCCGCTaGCTCCTCGTCCTCCTCGTC +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQIPRAR*LLVLLV
Trigger: GACGAGGAGGACGAGGAGGCAGCGGGCTCTCGGGAT...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGATCCCGAGAGCCCGCTaGCTCCTCGTCCTCCTCGTC +
Preference number: 4 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGIPRAR*LLVLLV
Trigger: GACGAGGAGGACGAGGAGGCAGCGGGCTCTCGGGAT...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAATGTCCCCCTCGGGGGTaGCCTGGACGCTCAACTCGT +
Preference number: 4 (lower is better)
Translates to: GSIVHTRFCSQALFLGCKCPPRG*PGRSTR
Trigger: ACGAGTTGAGCGTCCAGGGCACCCCCGAGGGGGACA...TTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp GGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATTGTCCCCCTCGGGGGTaGCCTGGACGCTCAACTCGT +
Preference number: 4 (lower is better)
Translates to: GPKEFGSVQFQDVWLSSDCPPRG*PGRSTR
Trigger: ACGAGTTGAGCGTCCAGGGCACCCCCGAGGGGGACA...ATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp TGGCCGCTGGGCCCGAAGGTATCGCTTCAGGTCCCCCAGCTGGCAGAACTCCATCATCCAGTCAGCCTGTaGTGTCCCAAGAGATTTCTG +
Preference number: 4 (lower is better)
Translates to: WPLGPKVSLQVPQLAELHHPVSL*CPKRFL
Trigger: CAGAAATCTCTTGGGACAGCACAGGCTGACTGGATG...ATGGAGTTCTGCCAGCTGGGGGACCTGAAGCGATACCTTCGGGCCCAGCGGCCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000211127.2
CDS-3UTR CCA 90 bp GGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTTCCAGAAGGGGGAACTaGGAGGACAGGGTCCCTGGG +
Preference number: 4 (lower is better)
Translates to: GLWAQKSSVQFSSKTCGCSRRGN*EDRVPG
Trigger: CCCAGGGACCCTGTCCTCCCAGTTCCCCCTTCTGGA...ACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAGGGATTGGATGGATTaGTATGGGGCGCAGGAGGCG +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSRDWMD*YGAQEA
Trigger: CGCCTCCTGCGCCCCATACCAATCCATCCAATCCCT...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGGAAGAGGGGCTCTGGTaGAGAACCGTGCTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: CARGLWAQKSSVQFSSKTEEGLW*RTVLLQ
Trigger: CTGGAGGAGCACGGTTCTCCACCAGAGCCCCTCTTC...CGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGAGGAAGAGTCGTCCTCTaGGGGGTGGGGACAACCAAG +
Preference number: 4 (lower is better)
Translates to: AVPGGSGPKRVRFSSVPRGRVVL*GVGTTK
Trigger: CTTGGTTGTCCCCACCCCCCAGAGGACGACTCTTCC...TCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTGTCCCTGTTCGGGCCTaGGCCCTTCTCTCTGTTCGC +
Preference number: 4 (lower is better)
Translates to: GLWAQKSSVQFSSKTCGCVPVRA*ALLSVR
Trigger: GCGAACAGAGAGAAGGGCCCAGGCCCGAACAGGGAC...ACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CTCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGACATGTCCGGGACTCCTaGCTTCCCGTTCTCCAACAC +
Preference number: 4 (lower is better)
Translates to: LPRGCVSVRGNGSIVHTRHVRDS*LPVLQH
Trigger: GTGTTGGAGAACGGGAAGCCAGGAGTCCCGGACATG...TCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCATGTCCGGGACTCCTaGCTTCCCGTTCTCCAACAC +
Preference number: 4 (lower is better)
Translates to: PLLCQGALGPKEFGSVQFHVRDS*LPVLQH
Trigger: GTGTTGGAGAACGGGAAGCCAGGAGTCCCGGACATG...GAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGGCTGCTTCTCCCCGGCCTCTaGGGACATCGGCTCCCCATT +
Preference number: 4 (lower is better)
Translates to: SSTQDSARKPSSWDAKGLLLPGL*GHRLPI
Trigger: AATGGGGAGCCGATGTCCCCAGAGGCCGGGGAGAAG...CAGCCCCTTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGAGCCTCTCCGTGTTCCTaGGCAGCCTCAGGACCCCAT +
Preference number: 4 (lower is better)
Translates to: GPKRVRFSSVPRRVAVQRASPCS*AASGPH
Trigger: ATGGGGTCCTGAGGCTGCCCAGGAACACGGAGAGGC...TCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCCCGAGGTCCAATCTCTaGTGGCCTCTCCGTGTTCCT +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSPRSNL*WPLRVP
Trigger: AGGAACACGGAGAGGCCACCAGAGATTGGACCTCGG...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGATCTCCAAGCCGTTCTaGGGCAAGGCTGCCTCGCAG +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVISKPF*GKAASQ
Trigger: CTGCGAGGCAGCCTTGCCCCAGAACGGCTTGGAGAT...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGATCTCCAAGCCGTTCTaGGGCAAGGCTGCCTCGCAG +
Preference number: 4 (lower is better)
Translates to: CARGLWAQKSSVQFSSKTISKPF*GKAASQ
Trigger: CTGCGAGGCAGCCTTGCCCCAGAACGGCTTGGAGAT...CGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACTGGCTGTGGCGGAGGTaGCAGTGGTCTCGAGTTGTC +
Preference number: 4 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDWLWRR*QWSRVV
Trigger: GACAACTCGAGACCACTGCCACCTCCGCCACAGCCA...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAATGGCTGTGGCGGAGGTaGCAGTGGTCTCGAGTTGTC +
Preference number: 4 (lower is better)
Translates to: LLCQGALGPKEFGSVQFQWLWRR*QWSRVV
Trigger: GACAACTCGAGACCACTGCCACCTCCGCCACAGCCA...TTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGAGGCTTTCAGGGGCACTaGCTCCGGCCTCCTCTGTTG +
Preference number: 4 (lower is better)
Translates to: GPKRVRFSSVPRRVAVQRGFQGH*LRPPLL
Trigger: CAACAGAGGAGGCCGGAGCCAGTGCCCCTGAAAGCC...TCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAACCTGGCTCTTCCTCTTaGGCCACCTCCGGCCTGGCT +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQPGSSS*ATSGLA
Trigger: AGCCAGGCCGGAGGTGGCCCAAGAGGAAGAGCCAGG...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGTCCTCGTCTACGCTaGGGGCCATGTCTCCGCCGA +
Preference number: 4 (lower is better)
Translates to: GSIVHTRFCSQALFLGCKGPRLR*GPCLRR
Trigger: TCGGCGGAGACATGGCCCCCAGCGTAGACGAGGACC...TTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp AGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCGTCCAGGAACAAGCGTaGCATCTCGGGGCCCTTCCT +
Preference number: 4 (lower is better)
Translates to: RGLWAQKSSVQFSSKTCGVQEQA*HLGALP
Trigger: AGGAAGGGCCCCGAGATGCCACGCTTGTTCCTGGAC...GCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTACGGTCACGTCCCCGTaGAAGGAGACCATCTTGCGC +
Preference number: 4 (lower is better)
Translates to: ARGLWAQKSSVQFSSKTCTVTSP*KETILR
Trigger: GCGCAAGATGGTCTCCTTCCACGGGGACGTGACCGT...ACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGGGGCTGGGTCTTTaGGGAGTCAGTTCTCCACGG +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSKGLGL*GVSSPR
Trigger: CCGTGGAGAACTGACTCCCCAAAGACCCAGCCCCTT...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACCTCCTGTTTGGCACATaGTGGAGGAGAGGGAGGGCC +
Preference number: 4 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDLLFGT*WRRGRA
Trigger: GGCCCTCCCTCTCCTCCACCATGTGCCAAACAGGAG...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCGCTGGGTGGAGGGCCTaGGCCTCCTGTTTGGCACAT +
Preference number: 4 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVAGWRA*ASCLAH
Trigger: ATGTGCCAAACAGGAGGCCCAGGCCCTCCACCCAGC...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAATGCTCGCTGTTCCCCTaGGGTGGTCCCAAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQCSLFP*GGPKSR
Trigger: CCTGGACTTGGGACCACCTCAGGGGAACAGCGAGCA...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR TCA 90 bp CTGGCAGAACTCCATGATCAACAGGAAGGGCAAGGTCTCCACACAGACGCCCAGAGGCAGGAAGGACACTaGGCATCCAGTCAGCCTGTG +
Preference number: 4 (lower is better)
Translates to: LAELHDQQEGQGLHTDAQRQEGH*ASSQPV
Trigger: CACAGGCTGACTGGATGCTCAGTGTCCTTCCTGCCT...CTGGGCGTCTGTGTGGAGACCTTGCCCTTCCTGTTGATCATGGAGTTCTGCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211127.2
CDS-3UTR GCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGTCCCAAACCAGCCGCTaGCAATCTCCTGCAGGTAGC +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVSQTSR*QSPAGS
Trigger: GCTACCTGCAGGAGATTGGCAGCGGCTGGTTTGGGA...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp TCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGATGTGAGAGTGCAGGTGTaGCAGTCCTCGGGCAATCTC +
Preference number: 4 (lower is better)
Translates to: SPEAVSVSGAMAPSSTQDVRVQV*QSSGNL
Trigger: GAGATTGCCCGAGGACTGGCACACCTGCACTCTCAC...ATCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp CTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGTGAGAGTGCAGGTGTaGCAGTCCTCGGGCAATCTC +
Preference number: 4 (lower is better)
Translates to: LLCQGALGPKEFGSVQFQVRVQV*QSSGNL
Trigger: GAGATTGCCCGAGGACTGGCACACCTGCACTCTCAC...TTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAACTACCAGCACGAAGCTaGCGTGCAGCTCGCCCAGCA +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQLPARS*RAARPA
Trigger: TGCTGGGCGAGCTGCACGGCAGCTTCGTGCTGGTAG...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp TCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGGCTGGCCAGCTTCACGTGCTaGTGGCGGACAACAAAGGCC +
Preference number: 4 (lower is better)
Translates to: SSTQDSARKPSSWDAKGLASFTC*WRTTKA
Trigger: GGCCTTTGTTGTCCGCCAGCAGCACGTGAAGCTGGC...CAGCCCCTTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp CCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCGGATATAGTACTCGCTaGTCACCGAGGGACTGCGTG +
Preference number: 4 (lower is better)
Translates to: PLLCQGALGPKEFGSVQFGYSTR*SPRDCV
Trigger: CACGCAGTCCCTCGGTGAGCAGCGAGTACTATATCC...GAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp TCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGATGGAAGGAGACCATCTTaGGCTTCCTCTCCAGCTCGC +
Preference number: 4 (lower is better)
Translates to: SPEAVSVSGAMAPSSTQDGRRPS*ASSPAR
Trigger: GCGAGCTGGAGAGGAAGCGCAAGATGGTCTCCTTCC...ATCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp AGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCGATGAGTGCGCCGGGTaGAGGCATCTTGTCCAGGAT +
Preference number: 4 (lower is better)
Translates to: RGLWAQKSSVQFSSKTCGDECAG*RHLVQD
Trigger: ATCCTGGACAAGATGCCTGCACCCGGCGCACTCATC...GCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGACATGCCTTCAGGTaGCCGCTGGGCCCGAAGGTA +
Preference number: 4 (lower is better)
Translates to: GSIVHTRFCSQALFLGCKGHAFR*PLGPKV
Trigger: TACCTTCGGGCCCAGCGGCCACCTGAAGGCATGTCC...TTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGACATGCCTTCAGGTaGCCGCTGGGCCCGAAGGTA +
Preference number: 4 (lower is better)
Translates to: GPKEFGSVQFQDVWLSSDGHAFR*PLGPKV
Trigger: TACCTTCGGGCCCAGCGGCCACCTGAAGGCATGTCC...ATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCTTGGATGGATTGGTATaGGGCGCAGGAGGCGCAGAA +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSLDGLV*GAGGAE
Trigger: TTCTGCGCCTCCTGCGCCCCATACCAATCCATCCAA...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCTTGGATGGATTGGTATaGGGCGCAGGAGGCGCAGAA +
Preference number: 4 (lower is better)
Translates to: PLLCQGALGPKEFGSVQFLDGLV*GAGGAE
Trigger: TTCTGCGCCTCCTGCGCCCCATACCAATCCATCCAA...GAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGGCTGGAAGAGGGGCTCTGGTaGAGAACCGTGCTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: SSTQDSARKPSSWDAKGLEEGLW*RTVLLQ
Trigger: CTGGAGGAGCACGGTTCTCCACCAGAGCCCCTCTTC...CAGCCCCTTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCGAAGAGGGGCTCTGGTaGAGAACCGTGCTCCTCCAG +
Preference number: 4 (lower is better)
Translates to: ALGPKEFGSVQFQDVWLSEEGLW*RTVLLQ
Trigger: CTGGAGGAGCACGGTTCTCCACCAGAGCCCCTCTTC...GGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCGGAAGAGTCGTCCTCTaGGGGGTGGGGACAACCAAG +
Preference number: 4 (lower is better)
Translates to: ALGPKEFGSVQFQDVWLSGRVVL*GVGTTK
Trigger: CTTGGTTGTCCCCACCCCCCAGAGGACGACTCTTCC...GGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACCATGTCCGGGACTCCTaGCTTCCCGTTCTCCAACAC +
Preference number: 4 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDHVRDS*LPVLQH
Trigger: GTGTTGGAGAACGGGAAGCCAGGAGTCCCGGACATG...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGCCTCTCCGTGTTCCTaGGCAGCCTCAGGACCCCAT +
Preference number: 4 (lower is better)
Translates to: GPKEFGSVQFQDVWLSSDASPCS*AASGPH
Trigger: ATGGGGTCCTGAGGCTGCCCAGGAACACGGAGAGGC...ATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAGCCTCTCCGTGTTCCTaGGCAGCCTCAGGACCCCAT +
Preference number: 4 (lower is better)
Translates to: WLHRPHKILLASPLLGMQASPCS*AASGPH
Trigger: ATGGGGTCCTGAGGCTGCCCAGGAACACGGAGAGGC...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGCCGAGGTCCAATCTCTaGTGGCCTCTCCGTGTTCCT +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVPRSNL*WPLRVP
Trigger: AGGAACACGGAGAGGCCACCAGAGATTGGACCTCGG...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAACCGAGGTCCAATCTCTaGTGGCCTCTCCGTGTTCCT +
Preference number: 4 (lower is better)
Translates to: LLCQGALGPKEFGSVQFQPRSNL*WPLRVP
Trigger: AGGAACACGGAGAGGCCACCAGAGATTGGACCTCGG...TTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCTTCTCCCAGGGCCCTaGGACTCTCCGAGGTCCAAT +
Preference number: 4 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVLLPGP*DSPRSN
Trigger: ATTGGACCTCGGAGAGTCCCAGGGCCCTGGGAGAAG...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGAATCTCCAAGCCGTTCTaGGGCAAGGCTGCCTCGCAG +
Preference number: 4 (lower is better)
Translates to: GPKRVRFSSVPRRVAVQRISKPF*GKAASQ
Trigger: CTGCGAGGCAGCCTTGCCCCAGAACGGCTTGGAGAT...TCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCTGGCTGTGGCGGAGGTaGCAGTGGTCTCGAGTTGTC +
Preference number: 4 (lower is better)
Translates to: ALGPKEFGSVQFQDVWLSWLWRR*QWSRVV
Trigger: GACAACTCGAGACCACTGCCACCTCCGCCACAGCCA...GGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGGCTGGTTGTCTGGGACCCCTaGCTCTTCCTCTTGGGCCAC +
Preference number: 4 (lower is better)
Translates to: SSTQDSARKPSSWDAKGLVVWDP*LFLLGH
Trigger: GTGGCCCAAGAGGAAGAGCCAGGGGTCCCAGACAAC...CAGCCCCTTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp TCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGGCTGGTCCAGGAACAAGCGTaGCATCTCGGGGCCCTTCCT +
Preference number: 4 (lower is better)
Translates to: SSTQDSARKPSSWDAKGLVQEQA*HLGALP
Trigger: AGGAAGGGCCCCGAGATGCCACGCTTGTTCCTGGAC...CAGCCCCTTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTGTCCAGGAACAAGCGTaGCATCTCGGGGCCCTTCCT +
Preference number: 4 (lower is better)
Translates to: GLWAQKSSVQFSSKTCGCVQEQA*HLGALP
Trigger: AGGAAGGGCCCCGAGATGCCACGCTTGTTCCTGGAC...ACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCGCTGTTCCCCTGAGGTaGTCCCAAGTCCAGGAACAA +
Preference number: 4 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSAVPLR*SQVQEQ
Trigger: TTGTTCCTGGACTTGGGACCACCTCAGGGGAACAGC...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCACGGTCACGTCCCCGTaGAAGGAGACCATCTTGCGC +
Preference number: 4 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVTVTSP*KETILR
Trigger: GCGCAAGATGGTCTCCTTCCACGGGGACGTGACCGT...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCACGGTCACGTCCCCGTaGAAGGAGACCATCTTGCGC +
Preference number: 4 (lower is better)
Translates to: ALGPKEFGSVQFQDVWLSTVTSP*KETILR
Trigger: GCGCAAGATGGTCTCCTTCCACGGGGACGTGACCGT...GGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGGACCCGAACAGGAAATaGGGACCACAGCGTAGGGCG +
Preference number: 4 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGDPNRK*GPQRRA
Trigger: CGCCCTACGCTGTGGTCCTCATTTCCTGTTCGGGTC...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp TGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGGCTGGCAGAACTCCATaGTCAACAGGAAGGGCAAGG +
Preference number: 4 (lower is better)
Translates to: CARGLWAQKSSVQFSSKTAGRTP*STGRAR
Trigger: CCTTGCCCTTCCTGTTGATCATGGAGTTCTGCCAGC...CGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp AGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCGCTGGCAGAACTCCATaGTCAACAGGAAGGGCAAGG +
Preference number: 4 (lower is better)
Translates to: RGLWAQKSSVQFSSKTCGAGRTP*STGRAR
Trigger: CCTTGCCCTTCCTGTTGATCATGGAGTTCTGCCAGC...GCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp GCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGGAGAGTTTGGCTTTaGTCTGCTCGCTGTTCCCCT +
Preference number: 4 (lower is better)
Translates to: ARGLWAQKSSVQFSSKTCGRVWL*SARCSP
Trigger: AGGGGAACAGCGAGCAGATCAAAGCCAAACTCTCCC...ACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp TGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGGGGAGAGTTTGGCTTTaGTCTGCTCGCTGTTCCCCT +
Preference number: 4 (lower is better)
Translates to: CARGLWAQKSSVQFSSKTGRVWL*SARCSP
Trigger: AGGGGAACAGCGAGCAGATCAAAGCCAAACTCTCCC...CGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGGCCAGCTTCACGTGCTaGTGGCGGACAACAAAGGCC +
Preference number: 4 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGASFTC*WRTTKA
Trigger: GGCCTTTGTTGTCCGCCAGCAGCACGTGAAGCTGGC...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAACGGGCCAGCTTCACGTaGTGCTGGCGGACAACAAAG +
Preference number: 4 (lower is better)
Translates to: GSIVHTRFCSQALFLGCKRASFT*CWRTTK
Trigger: CTTTGTTGTCCGCCAGCAGCACGTGAAGCTGGCCCG...TTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp GGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATCGGGCCAGCTTCACGTaGTGCTGGCGGACAACAAAG +
Preference number: 4 (lower is better)
Translates to: GPKEFGSVQFQDVWLSSDRASFT*CWRTTK
Trigger: CTTTGTTGTCCGCCAGCAGCACGTGAAGCTGGCCCG...ATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGGATATAGTACTCGCTaGTCACCGAGGGACTGCGTG +
Preference number: 4 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDGYSTR*SPRDCV
Trigger: CACGCAGTCCCTCGGTGAGCAGCGAGTACTATATCC...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGAGGATATAGTACTCGCTaGTCACCGAGGGACTGCGTG +
Preference number: 4 (lower is better)
Translates to: AVPGGSGPKRVRFSSVPRGYSTR*SPRDCV
Trigger: CACGCAGTCCCTCGGTGAGCAGCGAGTACTATATCC...TCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp CTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGGATATAGTACTCGCTaGTCACCGAGGGACTGCGTG +
Preference number: 4 (lower is better)
Translates to: LLCQGALGPKEFGSVQFQGYSTR*SPRDCV
Trigger: CACGCAGTCCCTCGGTGAGCAGCGAGTACTATATCC...TTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp AGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTTGGATGGATTGGTATaGGGCGCAGGAGGCGCAGAA +
Preference number: 4 (lower is better)
Translates to: RGLWAQKSSVQFSSKTCGLDGLV*GAGGAE
Trigger: TTCTGCGCCTCCTGCGCCCCATACCAATCCATCCAA...GCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGGGAAGAGTCGTCCTCTaGGGGGTGGGGACAACCAAG +
Preference number: 4 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGGRVVL*GVGTTK
Trigger: CTTGGTTGTCCCCACCCCCCAGAGGACGACTCTTCC...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGCTTCTCCCAGGGCCCTaGGACTCTCCGAGGTCCAAT +
Preference number: 4 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGLLPGP*DSPRSN
Trigger: ATTGGACCTCGGAGAGTCCCAGGGCCCTGGGAGAAG...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGACGGTCACGTCCCCGTaGAAGGAGACCATCTTGCGC +
Preference number: 4 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGTVTSP*KETILR
Trigger: GCGCAAGATGGTCTCCTTCCACGGGGACGTGACCGT...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGAGGGATGCAAAGGGGCTaGGTCTTTGGGGAGTCAGTT +
Preference number: 4 (lower is better)
Translates to: AVPGGSGPKRVRFSSVPRGMQRG*VFGESV
Trigger: AACTGACTCCCCAAAGACCCAGCCCCTTTGCATCCC...TCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS-3UTR GCA 90 bp GGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGTGAGAGTGCAGGTGTaGCAGTCCTCGGGCAATCTC +
Preference number: 4 (lower is better)
Translates to: GPKEFGSVQFQDVWLSSDVRVQV*QSSGNL
Trigger: GAGATTGCCCGAGGACTGGCACACCTGCACTCTCAC...ATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAAGGGATTGGATGGATTaGTATGGGGCGCAGGAGGCG +
Preference number: 4 (lower is better)
Translates to: GSIVHTRFCSQALFLGCKRDWMD*YGAQEA
Trigger: CGCCTCCTGCGCCCCATACCAATCCATCCAATCCCT...TTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGAGCTCAACTCGTTGGTTaGAGTCTCCTGGTCGAAGAG +
Preference number: 4 (lower is better)
Translates to: AVPGGSGPKRVRFSSVPRAQLVG*SLLVEE
Trigger: CTCTTCGACCAGGAGACTCCAACCAACGAGTTGAGC...TCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp TCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGATGCTCAACTCGTTGGTTaGAGTCTCCTGGTCGAAGAG +
Preference number: 4 (lower is better)
Translates to: SPEAVSVSGAMAPSSTQDAQLVG*SLLVEE
Trigger: CTCTTCGACCAGGAGACTCCAACCAACGAGTTGAGC...ATCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR GCA 90 bp GGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGCCCTCTTCTTGGGATaGAAAGGGGCTGGGTCTTTG +
Preference number: 4 (lower is better)
Translates to: GPKEFGSVQFQDVWLSSDALFLG*KGAGSL
Trigger: CAAAGACCCAGCCCCTTTGCATCCCAAGAAGAGGGC...ATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAATTGGATGGATTGGTATaGGGCGCAGGAGGCGCAGAA +
Preference number: 4 (lower is better)
Translates to: GSIVHTRFCSQALFLGCKLDGLV*GAGGAE
Trigger: TTCTGCGCCTCCTGCGCCCCATACCAATCCATCCAA...TTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CCA 90 bp GGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGCTGTTCCCCTGAGGTaGTCCCAAGTCCAGGAACAA +
Preference number: 4 (lower is better)
Translates to: GPKEFGSVQFQDVWLSSDAVPLR*SQVQEQ
Trigger: TTGTTCCTGGACTTGGGACCACCTCAGGGGAACAGC...ATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CCA 90 bp GGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTGCTCAACTCGTTGGTTaGAGTCTCCTGGTCGAAGAG +
Preference number: 4 (lower is better)
Translates to: GLWAQKSSVQFSSKTCGCAQLVG*SLLVEE
Trigger: CTCTTCGACCAGGAGACTCCAACCAACGAGTTGAGC...ACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR TCA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGGACTTTCTTCCTGCTaGACTACAAAGGTTGGCTTC +
Preference number: 4 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVGLSSC*TTKVGF
Trigger: GAAGCCAACCTTTGTAGTTCAGCAGGAAGAAAGTCC...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS CCA 90 bp CGGGCGGACCGTGTCCCCGTCGGCGCTGCTCACCACGACGGGCACTaGGGCTTCCCGCGTCCTCCCGGGATCCCGAGAGCCCGCTGCCTC +
Preference number: 5 (lower is better)
Translates to: RADRVPVGAAHHDGH*GFPRPPGIPRARCL
Trigger: GAGGCAGCGGGCTCTCGGGATCCCGGGAGGACGCGGGAAGCCCCAGTGCCCGTCGTGGTGAGCAGCGCCGACGGGGACACGGTCCGCCCG
77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCGCCGCGCGTGGAGACTaGAGCAGCCCCCGCAGCGGG +
Preference number: 5 (lower is better)
Translates to: VALMGPGETSAVPGGSGPAARGD*SSPRSG
Trigger: CCCGCTGCGGGGGCTGCTCAAGTCTCCACGCGCGGC...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
74% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp TGGCCGCCGCGGGCCCGGGCCCGGGAACGGCGTGAGCGTGAGCGGTaGGAGCGCCAGCGAGAGCCGGGAGAGTTTGGCTTTGATCTGCTC +
Preference number: 5 (lower is better)
Translates to: WPPRARARERRERER*ERQREPGEFGFDLL
Trigger: GAGCAGATCAAAGCCAAACTCTCCCGGCTCTCGCTGGCGCTCCCACCGCTCACGCTCACGCCGTTCCCGGGCCCGGGCCCGCGGCGGCCA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCCTCCGGCCTCCTCTGTaGGGCCCCCAGTGGCTGTGG +
Preference number: 5 (lower is better)
Translates to: VALMGPGETSAVPGGSGPLRPPL*GPQWLW
Trigger: CCACAGCCACTGGGGGCCCAACAGAGGAGGCCGGAG...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCCCCTGGCTCTTCCTCTaGGGCCACCTCCGGCCTGGC +
Preference number: 5 (lower is better)
Translates to: VALMGPGETSAVPGGSGPPWLFL*GHLRPG
Trigger: GCCAGGCCGGAGGTGGCCCAAGAGGAAGAGCCAGGG...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
72% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCACTCCGGCCTCCTCTGTaGGGCCCCCAGTGGCTGTGG +
Preference number: 5 (lower is better)
Translates to: WPSWGQERPLLCQGALGPLRPPL*GPQWLW
Trigger: CCACAGCCACTGGGGGCCCAACAGAGGAGGCCGGAG...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
71% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCCTGGCTCTTCCTCTaGGGCCACCTCCGGCCTGGC +
Preference number: 5 (lower is better)
Translates to: QWPSWGQERPLLCQGALGPWLFL*GHLRPG
Trigger: GCCAGGCCGGAGGTGGCCCAAGAGGAAGAGCCAGGG...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp TCCCCTGCGGCTGGGTCCCCCTCCAAGGCTGCTGCTGTCCTCGCCTaGGGAGCTCTCTTCCTCCTCCTCTTCGGCCCAGGGTGCGGTACC +
Preference number: 5 (lower is better)
Translates to: SPAAGSPSKAAAVLA*GALFLLLFGPGCGT
Trigger: GGTACCGCACCCTGGGCCGAAGAGGAGGAGGAAGAGAGCTCCCCAGGCGAGGACAGCAGCAGCCTTGGAGGGGGACCCAGCCGCAGGGGA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp TGGCTCTTCCTCTTGGGCCACCTCCGGCCTGGCTTTCAGGGGCACTaGCTCCGGCCTCCTCTGTTGGGCCCCCAGTGGCTGTGGCGGAGG +
Preference number: 5 (lower is better)
Translates to: WLFLLGHLRPGFQGH*LRPPLLGPQWLWRR
Trigger: CCTCCGCCACAGCCACTGGGGGCCCAACAGAGGAGGCCGGAGCCAGTGCCCCTGAAAGCCAGGCCGGAGGTGGCCCAAGAGGAAGAGCCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCATCTGGGTTCCCGCTCTaGGGGGCTGGGCCAAGCTGG +
Preference number: 5 (lower is better)
Translates to: WPSWGQERPLLCQGALGPSGFPL*GAGPSW
Trigger: CCAGCTTGGCCCAGCCCCCAAGAGCGGGAACCCAGA...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCCCCTTCCTCTCCGGCTaGAGGGGGTCCTCGTCTACG +
Preference number: 5 (lower is better)
Translates to: VALMGPGETSAVPGGSGPPFLSG*RGSSST
Trigger: CGTAGACGAGGACCCCCTCAAGCCGGAGAGGAAGGG...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
70% GC, longest homopolymer 6 nt, total homopolymer stretches 20 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS GCA 90 bp GCAGCCGGAGGCGGAGACGGCCGCCAGGAGGATGAGTGCGCCGGGTaGAGGCATCTTGTCCAGGATGGAAGGGAGGTGGAGGAATCGGCG +
Preference number: 5 (lower is better)
Translates to: AAGGGDGRQEDECAG*RHLVQDGREVEESA
Trigger: CGCCGATTCCTCCACCTCCCTTCCATCCTGGACAAGATGCCTGCACCCGGCGCACTCATCCTCCTGGCGGCCGTCTCCGCCTCCGGCTGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209617.2
CDS CCA 90 bp ATGAGTGCGCCGGGTGCAGGCATCTTGTCCAGGATGGAAGGGAGGTaGAGGAATCGGCGGCCGGAAGCGCGGACTGCCGCCCTCGGCGAG +
Preference number: 5 (lower is better)
Translates to: MSAPGAGILSRMEGR*RNRRPEARTAALGE
Trigger: CTCGCCGAGGGCGGCAGTCCGCGCTTCCGGCCGCCGATTCCTCCACCTCCCTTCCATCCTGGACAAGATGCCTGCACCCGGCGCACTCAT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209617.2
CDS-3UTR CAA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCACCCTTCCTCTCCGGCTaGAGGGGGTCCTCGTCTACG +
Preference number: 5 (lower is better)
Translates to: WPSWGQERPLLCQGALGPPFLSG*RGSSST
Trigger: CGTAGACGAGGACCCCCTCAAGCCGGAGAGGAAGGG...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp CGGCCTCCTCTGTTGGGCCCCCAGTGGCTGTGGCGGAGGTGGCAGTaGTCTCGAGTTGTCTACCCATCCGGCCTTTGCGTCCACGGCGCT +
Preference number: 5 (lower is better)
Translates to: RPPLLGPQWLWRRWQ*SRVVYPSGLCVHGA
Trigger: AGCGCCGTGGACGCAAAGGCCGGATGGGTAGACAACTCGAGACCACTGCCACCTCCGCCACAGCCACTGGGGGCCCAACAGAGGAGGCCG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp GTGGAAGGAGACCATCTTGCGCTTCCTCTCCAGCTCGCTGTCCTCTaGCTCGTCGGCCGCGCGTGGAGACTTGAGCAGCCCCCGCAGCGG +
Preference number: 5 (lower is better)
Translates to: VEGDHLALPLQLAVL*LVGRAWRLEQPPQR
Trigger: CCGCTGCGGGGGCTGCTCAAGTCTCCACGCGCGGCCGACGAGCCAGAGGACAGCGAGCTGGAGAGGAAGCGCAAGATGGTCTCCTTCCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGCCCTGGCTCTTCCTCTaGGGCCACCTCCGGCCTGGC +
Preference number: 5 (lower is better)
Translates to: VPEASGPHGARRDLCCARPWLFL*GHLRPG
Trigger: GCCAGGCCGGAGGTGGCCCAAGAGGAAGAGCCAGGG...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCAAGCCGCTGTCGCTGTaGGGAAACCCATCTCCTGGG +
Preference number: 5 (lower is better)
Translates to: VALMGPGETSAVPGGSGPKPLSL*GNPSPG
Trigger: CCCAGGAGATGGGTTTCCCAACAGCGACAGCGGCTT...GGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp TGGCTCCGGCCTCCTCTGTTGGGCCCCCAGTGGCTGTGGCGGAGGTaGCAGTGGTCTCGAGTTGTCTACCCATCCGGCCTTTGCGTCCAC +
Preference number: 5 (lower is better)
Translates to: WLRPPLLGPQWLWRR*QWSRVVYPSGLCVH
Trigger: GTGGACGCAAAGGCCGGATGGGTAGACAACTCGAGACCACTGCCACCTCCGCCACAGCCACTGGGGGCCCAACAGAGGAGGCCGGAGCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp GGCTTTCAGGGGCACTGGCTCCGGCCTCCTCTGTTGGGCCCCCAGTaGCTGTGGCGGAGGTGGCAGTGGTCTCGAGTTGTCTACCCATCC +
Preference number: 5 (lower is better)
Translates to: GFQGHWLRPPLLGPQ*LWRRWQWSRVVYPS
Trigger: GGATGGGTAGACAACTCGAGACCACTGCCACCTCCGCCACAGCCACTGGGGGCCCAACAGAGGAGGCCGGAGCCAGTGCCCCTGAAAGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp GTCCTCGTCTACGCTGGGGGCCATGTCTCCGCCGAGCCTGTTGTCTaGGACCCCTGGCTCTTCCTCTTGGGCCACCTCCGGCCTGGCTTT +
Preference number: 5 (lower is better)
Translates to: VLVYAGGHVSAEPVV*DPWLFLLGHLRPGF
Trigger: AAAGCCAGGCCGGAGGTGGCCCAAGAGGAAGAGCCAGGGGTCCCAGACAACAGGCTCGGCGGAGACATGGCCCCCAGCGTAGACGAGGAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp TCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGGCTGGGTCTTTaGGGAGTCAGTTCTCCACGGGGCCTGCGGGCCGGGCGTCGGGAG +
Preference number: 5 (lower is better)
Translates to: SARKPSSWDAKGLGL*GVSSPRGLRAGRRE
Trigger: CTCCCGACGCCCGGCCCGCAGGCCCCGTGGAGAACTGACTCCCCAAAGACCCAGCCCCTTTGCATCCCAAGAAGAGGGCTTGCGAGCAGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS TCA 90 bp GCCCAGAATCCGATGCACGCGGGACGGATGGAAGGATGGACAGACTaGCGGACGCGTGGAGAGCCGGGTGGCGAGGCGGAGTGGTCAATG +
Preference number: 5 (lower is better)
Translates to: AQNPMHAGRMEGWTD*RTRGEPGGEAEWSM
Trigger: CATTGACCACTCCGCCTCGCCACCCGGCTCTCCACGCGTCCGTCAGTCTGTCCATCCTTCCATCCGTCCCGCGTGCATCGGATTCTGGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209351.2
CDS CCA 90 bp GGGCGTCTTCTCCCAGGGCCCTGGGACTCTCCGAGGTCCAATCTCTaGTGGCCTCTCCGTGTTCCTGGGCAGCCTCAGGACCCCATTCTC +
Preference number: 5 (lower is better)
Translates to: GRLLPGPWDSPRSNL*WPLRVPGQPQDPIL
Trigger: GAGAATGGGGTCCTGAGGCTGCCCAGGAACACGGAGAGGCCACCAGAGATTGGACCTCGGAGAGTCCCAGGGCCCTGGGAGAAGACGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp ACGGATGGAAGGATGGACAGACTGACGGACGCGTGGAGAGCCGGGTaGCGAGGCGGAGTGGTCAATGGAGTGAGGAGGGAGGCGCTTCCC +
Preference number: 5 (lower is better)
Translates to: TDGRMDRLTDAWRAG*RGGVVNGVRREALP
Trigger: GGGAAGCGCCTCCCTCCTCACTCCATTGACCACTCCGCCTCGCCACCCGGCTCTCCACGCGTCCGTCAGTCTGTCCATCCTTCCATCCGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209351.2
CDS CCA 90 bp GATGCACGCGGGACGGATGGAAGGATGGACAGACTGACGGACGCGTaGAGAGCCGGGTGGCGAGGCGGAGTGGTCAATGGAGTGAGGAGG +
Preference number: 5 (lower is better)
Translates to: DARGTDGRMDRLTDA*RAGWRGGVVNGVRR
Trigger: CCTCCTCACTCCATTGACCACTCCGCCTCGCCACCCGGCTCTCCACGCGTCCGTCAGTCTGTCCATCCTTCCATCCGTCCCGCGTGCATC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209351.2
CDS-3UTR CAA 90 bp GGTCTCCACACAGACGCCCAGGCACTGGAGGACGTTGGGATGCTGCAGGCTCCTGCCTCGGAGATGAACTaGCGCTGTTCCAGGGGCCCG +
Preference number: 5 (lower is better)
Translates to: GLHTDAQALEDVGMLQAPASEMN*RCSRGP
Trigger: CGGGCCCCTGGAACAGCGCAAGTTCATCTCCGAGGC...AGGAGCCTGCAGCATCCCAACGTCCTCCAGTGCCTGGGCGTCTGTGTGGAGACC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211127.2
CDS-3UTR CAA 90 bp CTCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGACCGCTGTCCCCCGGCTaGGGGCCCGGAGACGATAGG +
Preference number: 5 (lower is better)
Translates to: LPRGCVSVRGNGSIVHTRPLSPG*GPGDDR
Trigger: CCTATCGTCTCCGGGCCCCAAGCCGGGGGACAGCGG...TCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CAA 90 bp AGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGGGGCCCTTCCTCTCCGGCTaGAGGGGGTCCTCGTCTACG +
Preference number: 5 (lower is better)
Translates to: RRVAVQRWGFLPHVAPRGPFLSG*RGSSST
Trigger: CGTAGACGAGGACCCCCTCAAGCCGGAGAGGAAGGG...CCCCCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CAA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGCCGCGCGTGGAGACTaGAGCAGCCCCCGCAGCGGG +
Preference number: 5 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDAARGD*SSPRSG
Trigger: CCCGCTGCGGGGGCTGCTCAAGTCTCCACGCGCGGC...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCCGCGCGTGGAGACTaGAGCAGCCCCCGCAGCGGG +
Preference number: 5 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVAARGD*SSPRSG
Trigger: CCCGCTGCGGGGGCTGCTCAAGTCTCCACGCGCGGC...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp GACTTTCTTCCTGCTGACCAGGGATGTCAGGTCCCTGTTCGGGCCTaGGCCCTTCTCTCTGTTCGCGGGGCTTCTCCCCGCCTTCCTGGG +
Preference number: 5 (lower is better)
Translates to: DFLPADQGCQVPVRA*ALLSVRGASPRLPG
Trigger: CCCAGGAAGGCGGGGAGAAGCCCCGCGAACAGAGAGAAGGGCCCAGGCCCGAACAGGGACCTGACATCCCTGGTCAGCAGGAAGAAAGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS CCA 90 bp CGTCTTCTCCCAGGGCCCTGGGACTCTCCGAGGTCCAATCTCTGGTaGCCTCTCCGTGTTCCTGGGCAGCCTCAGGACCCCATTCTCTGC +
Preference number: 5 (lower is better)
Translates to: RLLPGPWDSPRSNLW*PLRVPGQPQDPILC
Trigger: GCAGAGAATGGGGTCCTGAGGCTGCCCAGGAACACGGAGAGGCCACCAGAGATTGGACCTCGGAGAGTCCCAGGGCCCTGGGAGAAGACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp TGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGCCGCTGTCCCCCGGCTaGGGGCCCGGAGACGATAGG +
Preference number: 5 (lower is better)
Translates to: CARGLWAQKSSVQFSSKTPLSPG*GPGDDR
Trigger: CCTATCGTCTCCGGGCCCCAAGCCGGGGGACAGCGG...CGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTCCGCTGTCCCCCGGCTaGGGGCCCGGAGACGATAGG +
Preference number: 5 (lower is better)
Translates to: ARGLWAQKSSVQFSSKTCPLSPG*GPGDDR
Trigger: CCTATCGTCTCCGGGCCCCAAGCCGGGGGACAGCGG...ACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp TGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCCACCTTCTCCTCGCTCTTaGGGGACATCAGAACCCCAT +
Preference number: 5 (lower is better)
Translates to: WPSWGQERPLLCQGALGPPSPRS*GTSEPH
Trigger: ATGGGGTTCTGATGTCCCCAAAGAGCGAGGAGAAGG...TGGGCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCCTCCGGCCTCCTCTGTaGGGCCCCCAGTGGCTGTGG +
Preference number: 5 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSLRPPL*GPQWLW
Trigger: CCACAGCCACTGGGGGCCCAACAGAGGAGGCCGGAG...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp CGGAAGCACGCTAGGGGTGGACAGCGCCTCATAGAAGGGATTGGATaGATTGGTATGGGGCGCAGGAGGCGCAGAAGCGGGTTGCCAGGG +
Preference number: 5 (lower is better)
Translates to: RKHARGGQRLIEGIG*IGMGRRRRRSGLPG
Trigger: CCCTGGCAACCCGCTTCTGCGCCTCCTGCGCCCCATACCAATCCATCCAATCCCTTCTATGAGGCGCTGTCCACCCCTAGCGTGCTTCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGGGGCTCTGGGCCGAACATCACCCCGTTaGCAACACAGACAGGTAAGG +
Preference number: 5 (lower is better)
Translates to: QWPSWGQERPLLCQGALGRTSPR*QHRQVR
Trigger: CCTTACCTGTCTGTGTTGCAAACGGGGTGATGTTCG...GCCCAGAGCCCCCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCTCTGGGTTCCCGCTCTaGGGGGCTGGGCCAAGCTGG +
Preference number: 5 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSSGFPL*GAGPSW
Trigger: CCAGCTTGGCCCAGCCCCCAAGAGCGGGAACCCAGA...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp TGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGCTCCGGCCTCCTCTGTaGGGCCCCCAGTGGCTGTGG +
Preference number: 5 (lower is better)
Translates to: CARGLWAQKSSVQFSSKTLRPPL*GPQWLW
Trigger: CCACAGCCACTGGGGGCCCAACAGAGGAGGCCGGAG...CGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGAAGCCGCTGTCGCTGTaGGGAAACCCATCTCCTGGG +
Preference number: 5 (lower is better)
Translates to: VPEASGPHGARRDLCCARKPLSL*GNPSPG
Trigger: CCCAGGAGATGGGTTTCCCAACAGCGACAGCGGCTT...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS TCA 90 bp TCACCCCGTTCACTGGAAGGCTCCTGCTGGGGACTTTCTTCCTGCTaGCCAGGGATGTCAGGTCCCTGTTCGGGCCTGGGCCCTTCTCTC +
Preference number: 5 (lower is better)
Translates to: SPRSLEGSCWGLSSC*PGMSGPCSGLGPSL
Trigger: GAGAGAAGGGCCCAGGCCCGAACAGGGACCTGACATCCCTGGTCAGCAGGAAGAAAGTCCCCAGCAGGAGCCTTCCAGTGAACGGGGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS TCA 90 bp AGCGAGAGCCGGGAGAGTTTGGCTTTGATCTGCTCGCTGTTCCCCTaGGGTGGTCCCAAGTCCAGGAACAAGCGTGGCATCTCGGGGCCC +
Preference number: 5 (lower is better)
Translates to: SESRESLALICSLFP*GGPKSRNKRGISGP
Trigger: GGGCCCCGAGATGCCACGCTTGTTCCTGGACTTGGGACCACCTCAGGGGAACAGCGAGCAGATCAAAGCCAAACTCTCCCGGCTCTCGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAACCGCTGTCCCCCGGCTaGGGGCCCGGAGACGATAGG +
Preference number: 5 (lower is better)
Translates to: WLHRPHKILLASPLLGMQPLSPG*GPGDDR
Trigger: CCTATCGTCTCCGGGCCCCAAGCCGGGGGACAGCGG...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CAA 90 bp GTTCCTGAAGCCAGTGGCCCTCATGGGGCCAGGAGAGACCTCTGCTGTGCCAGGCCCCTAGGAGGTTCTTaGTCACATCCTCCCGTAGGG +
Preference number: 5 (lower is better)
Translates to: VPEASGPHGARRDLCCARPLGGS*SHPPVG
Trigger: CCCTACGGGAGGATGTGACAAAGAACCTCCTAGGGG...CCTGGCACAGCAGAGGTCTCTCCTGGCCCCATGAGGGCCACTGGCTTCAGGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CAA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGCTACCCATCCGGCCTTaGCGTCCACGGCGCTTGCGG +
Preference number: 5 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVLPIRP*RPRRLR
Trigger: CCGCAAGCGCCGTGGACGCAAAGGCCGGATGGGTAG...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp AGACGTGTGGCTGTCCAGCGATGGGGCTTCCTGCCTCATGTGGCTCCAAGGGGGGGCAGTGGTCTCGAGTaGTCTACCCATCCGGCCTTT +
Preference number: 5 (lower is better)
Translates to: RRVAVQRWGFLPHVAPRGGSGLE*STHPAF
Trigger: AAAGGCCGGATGGGTAGACAACTCGAGACCACTGCC...CCCCCTTGGAGCCACATGAGGCAGGAAGCCCCATCGCTGGACAGCCACACGTCT
62% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CAA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCCCTGGCTCTTCCTCTaGGGCCACCTCCGGCCTGGC +
Preference number: 5 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVPWLFL*GHLRPG
Trigger: GCCAGGCCGGAGGTGGCCCAAGAGGAAGAGCCAGGG...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS TCA 90 bp ACTAGCCCGGAGTTCCTTCACCACCACCTGGGCTGGCGAGTAGTCTaGGAAAACCTCCCCGAGGATCACCTTCCCAAACCAGCCGCTGCC +
Preference number: 5 (lower is better)
Translates to: TSPEFLHHHLGWRVV*ENLPEDHLPKPAAA
Trigger: GGCAGCGGCTGGTTTGGGAAGGTGATCCTCGGGGAGGTTTTCTCAGACTACTCGCCAGCCCAGGTGGTGGTGAAGGAACTCCGGGCTAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000209701.2
ENSMUST00000233503.2
CDS CCA 90 bp GAGCCGGGAGAGTTTGGCTTTGATCTGCTCGCTGTTCCCCTGAGGTaGTCCCAAGTCCAGGAACAAGCGTGGCATCTCGGGGCCCTTCCT +
Preference number: 5 (lower is better)
Translates to: EPGEFGFDLLAVPLR*SQVQEQAWHLGALP
Trigger: AGGAAGGGCCCCGAGATGCCACGCTTGTTCCTGGACTTGGGACCACCTCAGGGGAACAGCGAGCAGATCAAAGCCAAACTCTCCCGGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCCTCGGAGATGAACTaGCGCTGTTCCAGGGGCCCG +
Preference number: 5 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVASEMN*RCSRGP
Trigger: CGGGCCCCTGGAACAGCGCAAGTTCATCTCCGAGGC...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp TCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGATGCCTCGGAGATGAACTaGCGCTGTTCCAGGGGCCCG +
Preference number: 5 (lower is better)
Translates to: SPEAVSVSGAMAPSSTQDASEMN*RCSRGP
Trigger: CGGGCCCCTGGAACAGCGCAAGTTCATCTCCGAGGC...ATCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CAA 90 bp AGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCGCCTCGGAGATGAACTaGCGCTGTTCCAGGGGCCCG +
Preference number: 5 (lower is better)
Translates to: RGLWAQKSSVQFSSKTCGASEMN*RCSRGP
Trigger: CGGGCCCCTGGAACAGCGCAAGTTCATCTCCGAGGC...GCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATCTGGGTTCCCGCTCTaGGGGGCTGGGCCAAGCTGG +
Preference number: 5 (lower is better)
Translates to: GPKRVRFSSVPRRVAVQRSGFPL*GAGPSW
Trigger: CCAGCTTGGCCCAGCCCCCAAGAGCGGGAACCCAGA...TCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCTCTGGGTTCCCGCTCTaGGGGGCTGGGCCAAGCTGG +
Preference number: 5 (lower is better)
Translates to: ALGPKEFGSVQFQDVWLSSGFPL*GAGPSW
Trigger: CCAGCTTGGCCCAGCCCCCAAGAGCGGGAACCCAGA...GGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCCTACCCATCCGGCCTTaGCGTCCACGGCGCTTGCGG +
Preference number: 5 (lower is better)
Translates to: ALGPKEFGSVQFQDVWLSLPIRP*RPRRLR
Trigger: CCGCAAGCGCCGTGGACGCAAAGGCCGGATGGGTAG...GGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCTACCCATCCGGCCTTaGCGTCCACGGCGCTTGCGG +
Preference number: 5 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVLPIRP*RPRRLR
Trigger: CCGCAAGCGCCGTGGACGCAAAGGCCGGATGGGTAG...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCGCCTGGGCCTCCTGTTaGGCACATGGTGGAGGAGAG +
Preference number: 5 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSAWASC*AHGGGE
Trigger: CTCTCCTCCACCATGTGCCAAACAGGAGGCCCAGGC...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS CCA 90 bp CGGGACTCCTGGCTTCCCGTTCTCCAACACTGTCACCCCGTTCACTaGAAGGCTCCTGCTGGGGACTTTCTTCCTGCTGACCAGGGATGT +
Preference number: 5 (lower is better)
Translates to: RDSWLPVLQHCHPVH*KAPAGDFLPADQGC
Trigger: ACATCCCTGGTCAGCAGGAAGAAAGTCCCCAGCAGGAGCCTTCCAGTGAACGGGGTGACAGTGTTGGAGAACGGGAAGCCAGGAGTCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CAA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCGCCTCGGAGATGAACTaGCGCTGTTCCAGGGGCCCG +
Preference number: 5 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVASEMN*RCSRGP
Trigger: CGGGCCCCTGGAACAGCGCAAGTTCATCTCCGAGGC...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAACACAGGCACTCAAGGTaGAGGCCACGGCTGCTCTCG +
Preference number: 5 (lower is better)
Translates to: LLCQGALGPKEFGSVQFQHRHSR*RPRLLS
Trigger: CGAGAGCAGCCGTGGCCTCAACCTTGAGTGCCTGTG...TTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACCACAGGCACTCAAGGTaGAGGCCACGGCTGCTCTCG +
Preference number: 5 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDHRHSR*RPRLLS
Trigger: CGAGAGCAGCCGTGGCCTCAACCTTGAGTGCCTGTG...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATGGGCTACCCATCCGGCCTTaGCGTCCACGGCGCTTGCGG +
Preference number: 5 (lower is better)
Translates to: PKEFGSVQFQDVWLSSDGLPIRP*RPRRLR
Trigger: CCGCAAGCGCCGTGGACGCAAAGGCCGGATGGGTAG...CCCATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCCCTTCCTCTCCGGCTaGAGGGGGTCCTCGTCTACG +
Preference number: 5 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVPFLSG*RGSSST
Trigger: CGTAGACGAGGACCCCCTCAAGCCGGAGAGGAAGGG...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAACCGGGTGCAGGCATCTaGTCCAGGATGGAAGGGAGG +
Preference number: 5 (lower is better)
Translates to: LLCQGALGPKEFGSVQFQPGAGI*SRMEGR
Trigger: CCTCCCTTCCATCCTGGACAAGATGCCTGCACCCGG...TTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000209617.2
CDS CCA 90 bp TTCCAGGCCATTCTCCGCCACCTTCTCCTTCATGTCCGGGACTCCTaGCTTCCCGTTCTCCAACACTGTCACCCCGTTCACTGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: FQAILRHLLLHVRDS*LPVLQHCHPVHWKA
Trigger: AGCCTTCCAGTGAACGGGGTGACAGTGTTGGAGAACGGGAAGCCAGGAGTCCCGGACATGAAGGAGAAGGTGGCGGAGAATGGCCTGGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACAAGCCGCTGTCGCTGTaGGGAAACCCATCTCCTGGG +
Preference number: 5 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDKPLSL*GNPSPG
Trigger: CCCAGGAGATGGGTTTCCCAACAGCGACAGCGGCTT...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 90 bp CGGGACTCCTGGCTTCCCGTTCTCCAACACTGTCACCCCGTTCACTaGAAGGCTCCTGCTGGGGACTTTCTTCCTGCTGAACTACAAAGG +
Preference number: 5 (lower is better)
Translates to: RDSWLPVLQHCHPVH*KAPAGDFLPAELQR
Trigger: CCTTTGTAGTTCAGCAGGAAGAAAGTCCCCAGCAGGAGCCTTCCAGTGAACGGGGTGACAGTGTTGGAGAACGGGAAGCCAGGAGTCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAACACAGGCACTCAAGGTaGAGGCCACGGCTGCTCTCG +
Preference number: 5 (lower is better)
Translates to: WLHRPHKILLASPLLGMQHRHSR*RPRLLS
Trigger: CGAGAGCAGCCGTGGCCTCAACCTTGAGTGCCTGTG...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CAA 90 bp TCCCCAGAGGCTGTGTCAGTGTCAGGGGCAATGGCTCCATCGTCCACACAAGATCCCCTAGGAGGTTCTTaGTCACATCCTCCCGTAGGG +
Preference number: 5 (lower is better)
Translates to: SPEAVSVSGAMAPSSTQDPLGGS*SHPPVG
Trigger: CCCTACGGGAGGATGTGACAAAGAACCTCCTAGGGG...ATCTTGTGTGGACGATGGAGCCATTGCCCCTGACACTGACACAGCCTCTGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CAA 90 bp CTCTGCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCCCTTCTCCTCGCTCTTaGGGGACATCAGAACCCCAT +
Preference number: 5 (lower is better)
Translates to: LCCARGLWAQKSSVQFSSPSPRS*GTSEPH
Trigger: ATGGGGTTCTGATGTCCCCAAAGAGCGAGGAGAAGG...GGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGCAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGGCAGTGGTCTCGAGTaGTCTACCCATCCGGCCTTT +
Preference number: 5 (lower is better)
Translates to: PGGSGPKRVRFSSVPRRVGSGLE*STHPAF
Trigger: AAAGGCCGGATGGGTAGACAACTCGAGACCACTGCC...CACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp AGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCGGCAGTGGTCTCGAGTaGTCTACCCATCCGGCCTTT +
Preference number: 5 (lower is better)
Translates to: RGLWAQKSSVQFSSKTCGGSGLE*STHPAF
Trigger: AAAGGCCGGATGGGTAGACAACTCGAGACCACTGCC...GCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTCGGGAGAGTTTGGCTTaGATCTGCTCGCTGTTCCCC +
Preference number: 5 (lower is better)
Translates to: ARGLWAQKSSVQFSSKTCRESLA*ICSLFP
Trigger: GGGGAACAGCGAGCAGATCAAAGCCAAACTCTCCCG...ACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp CTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACCGGGAGAGTTTGGCTTaGATCTGCTCGCTGTTCCCC +
Preference number: 5 (lower is better)
Translates to: LCQGALGPKEFGSVQFQDRESLA*ICSLFP
Trigger: GGGGAACAGCGAGCAGATCAAAGCCAAACTCTCCCG...GTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGAAAAGGGGCTGGGTCTTaGGGGAGTCAGTTCTCCACG +
Preference number: 5 (lower is better)
Translates to: AVPGGSGPKRVRFSSVPRKGAGS*GSQFST
Trigger: CGTGGAGAACTGACTCCCCAAAGACCCAGCCCCTTT...TCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS TCA 90 bp AGCAAGACTGCAAAATGTCATACCAATAGTCAGCGTAGGGCAGCTTaGGCCTGGGCCGGGCCAGCTTCACGTGCTGCTGGCGGACAACAA +
Preference number: 5 (lower is better)
Translates to: SKTAKCHTNSQRRAA*AWAGPASRAAGGQQ
Trigger: TTGTTGTCCGCCAGCAGCACGTGAAGCTGGCCCGGCCCAGGCTCAAGCTGCCCTACGCTGACTATTGGTATGACATTTTGCAGTCTTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCCCCTAGGAGGTTCTTaGTCACATCCTCCCGTAGGG +
Preference number: 5 (lower is better)
Translates to: GSGPKRVRFSSVPRRVAVPLGGS*SHPPVG
Trigger: CCCTACGGGAGGATGTGACAAAGAACCTCCTAGGGG...GACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CAA 90 bp TGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGCCTTCTCCTCGCTCTTaGGGGACATCAGAACCCCAT +
Preference number: 5 (lower is better)
Translates to: CARGLWAQKSSVQFSSKTPSPRS*GTSEPH
Trigger: ATGGGGTTCTGATGTCCCCAAAGAGCGAGGAGAAGG...CGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp TGGCTCCATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAAGCCGCTGTCGCTGTaGGGAAACCCATCTCCTGGG +
Preference number: 5 (lower is better)
Translates to: WLHRPHKILLASPLLGMQKPLSL*GNPSPG
Trigger: CCCAGGAGATGGGTTTCCCAACAGCGACAGCGGCTT...TTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGATGGAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS-3UTR CAA 90 bp GCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTCGAACATCACCCCGTTaGCAACACAGACAGGTAAGG +
Preference number: 5 (lower is better)
Translates to: ARGLWAQKSSVQFSSKTCRTSPR*QHRQVR
Trigger: CCTTACCTGTCTGTGTTGCAAACGGGGTGATGTTCG...ACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GCTGTGCCAGGGGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGAACATCACCCCGTTaGCAACACAGACAGGTAAGG +
Preference number: 5 (lower is better)
Translates to: AVPGGSGPKRVRFSSVPRRTSPR*QHRQVR
Trigger: CCTTACCTGTCTGTGTTGCAAACGGGGTGATGTTCG...TCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCCCCTGGCACAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCCCTTCTCCTCGCTCTTaGGGGACATCAGAACCCCAT +
Preference number: 5 (lower is better)
Translates to: ALGPKEFGSVQFQDVWLSPSPRS*GTSEPH
Trigger: ATGGGGTTCTGATGTCCCCAAAGAGCGAGGAGAAGG...GGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp GGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTCCAGCGATCGGGAGAGTTTGGCTTaGATCTGCTCGCTGTTCCCC +
Preference number: 5 (lower is better)
Translates to: GPKEFGSVQFQDVWLSSDRESLA*ICSLFP
Trigger: GGGGAACAGCGAGCAGATCAAAGCCAAACTCTCCCG...ATCGCTGGACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS-3UTR CAA 90 bp TCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATGCAAAGGGGCTGCGAACATCACCCCGTTaGCAACACAGACAGGTAAGG +
Preference number: 5 (lower is better)
Translates to: SSTQDSARKPSSWDAKGLRTSPR*QHRQVR
Trigger: CCTTACCTGTCTGTGTTGCAAACGGGGTGATGTTCG...CAGCCCCTTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS CCA 90 bp ACTGAGCATCCAGTCAGCCTGTGCTGTCCCAAGAGATTTCTGACATaGGTCAGCTATGAAGCACCTGTAGGGCTGAGCCTCGGAGATGAA +
Preference number: 5 (lower is better)
Translates to: TEHPVSLCCPKRFLT*VSYEAPVGLSLGDE
Trigger: TTCATCTCCGAGGCTCAGCCCTACAGGTGCTTCATAGCTGACCCATGTCAGAAATCTCTTGGGACAGCACAGGCTGACTGGATGCTCAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211127.2
CDS-3UTR CAA 90 bp GGGCTCTGGGCCCAAAAGAGTTCGGTTCAGTTCAGTTCCAAGACGTGTGGCTGTGGGTTCTCAAACTCCTaGAAACGAACATCACCCCGT +
Preference number: 5 (lower is better)
Translates to: GLWAQKSSVQFSSKTCGCGFSNS*KRTSPR
Trigger: ACGGGGTGATGTTCGTTTCAAGGAGTTTGAGAACCC...ACAGCCACACGTCTTGGAACTGAACTGAACCGAACTCTTTTGGGCCCAGAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp AGGGGCCCGGCTCAGAGCGAATCCATCCGGGTGCGCTaGGGACGCCAGGCAGCCGGAGGCGGAGACGGCCGC +
Preference number: 6 (lower is better)
Translates to: RGPAQSESIRVR*GRQAAGGGDGR
Trigger: GCGGCCGTCTCCGCCTCCGGCTGCCTGGCGTCCCCAGCGCACCCGGATGGATTCGCTCTGAGCCGGGCCCCT
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000209701.2
ENSMUST00000211609.2
ENSMUST00000233503.2
CDS TCA 72 bp GCCCTCGGGGTCCCAGCCGCTCAGCAGGAAACCACCTaGTCCCGAGGACTGGGCCGGGAAGGGTCGGGGCGC +
Preference number: 6 (lower is better)
Translates to: ALGVPAAQQETT*SRGLGREGSGR
Trigger: GCGCCCCGACCCTTCCCGGCCCAGTCCTCGGGATCAGGTGGTTTCCTGCTGAGCGGCTGGGACCCCGAGGGC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp CGGGCCCGGGCCCGGGAACGGCGTGAGCGTGAGCGGTaGGAGCGCCAGCGAGAGCCGGGAGAGTTTGGCTTT +
Preference number: 6 (lower is better)
Translates to: RARARERRERER*ERQREPGEFGF
Trigger: AAAGCCAAACTCTCCCGGCTCTCGCTGGCGCTCCCACCGCTCACGCTCACGCCGTTCCCGGGCCCGGGCCCG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS GCA 72 bp TGGCAGTGGTCTCGAGTTGTCTACCCATCCGGCCTTTaGGTCCACGGCGCTTGCGGGGCCGCCGGCGGGGGC +
Preference number: 6 (lower is better)
Translates to: WQWSRVVYPSGL*VHGACGAAGGG
Trigger: GCCCCCGCCGGCGGCCCCGCAAGCGCCGTGGACGCAAAGGCCGGATGGGTAGACAACTCGAGACCACTGCCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp GGGCCAAGCTGGCCAGGGGCCATCTCCAAGCCGTTCTaGGGCAAGGCTGCCTCGCAGGGCGCAGGGGCTCGA +
Preference number: 6 (lower is better)
Translates to: GPSWPGAISKPF*GKAASQGAGAR
Trigger: TCGAGCCCCTGCGCCCTGCGAGGCAGCCTTGCCCCAGAACGGCTTGGAGATGGCCCCTGGCCAGCTTGGCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CAA 72 bp GTGGCAGTGGTCTCGAGTTGTCTACCCATCCGGCCTTaGCGTCCACGGCGCTTGCGGGGCCGCCGGCGGGGG +
Preference number: 6 (lower is better)
Translates to: VAVVSSCLPIRP*RPRRLRGRRRG
Trigger: CCCCCGCCGGCGGCCCCGCAAGCGCCGTGGACGCAAAGGCCGGATGGGTAGACAACTCGAGACCACTGCCAC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp AAGGGGTCTCGGTCTCGTAGCCGCTGTCCCCCGGCTTaGGGCCCGGAGACGATAGGCCGGAGCCTGGACTGG +
Preference number: 6 (lower is better)
Translates to: KGSRSRSRCPPA*GPETIGRSLDW
Trigger: CCAGTCCAGGCTCCGGCCTATCGTCTCCGGGCCCCAAGCCGGGGGACAGCGGCTACGAGACCGAGACCCCTT
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CAA 72 bp CCTGGCTTTCAGGGGCACTGGCTCCGGCCTCCTCTGTaGGGCCCCCAGTGGCTGTGGCGGAGGTGGCAGTGG +
Preference number: 6 (lower is better)
Translates to: PGFQGHWLRPPL*GPQWLWRRWQW
Trigger: CCACTGCCACCTCCGCCACAGCCACTGGGGGCCCAACAGAGGAGGCCGGAGCCAGTGCCCCTGAAAGCCAGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CAA 90 bp TGTTGGGCCCCCAGTGGCTGTGGCGGAGGTGGCAGTGGTCTCGAGTaGTCTACCCATCCGGCCTTTGCGTCCACGGCGCTTGCGGGGCCG +
Preference number: 6 (lower is better)
Translates to: CWAPSGCGGGGSGLE*STHPAFASTALAGP
Trigger: CGGCCCCGCAAGCGCCGTGGACGCAAAGGCCGGATGGGTAGACAACTCGAGACCACTGCCACCTCCGCCACAGCCACTGGGGGCCCAACA
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CAA 90 bp GCGGAGACGGCCGCCAGGAGGATGAGTGCGCCGGGTGCAGGCATCTaGTCCAGGATGGAAGGGAGGTGGAGGAATCGGCGGCCGGAAGCG +
Preference number: 6 (lower is better)
Translates to: AETAARRMSAPGAGI*SRMEGRWRNRRPEA
Trigger: CGCTTCCGGCCGCCGATTCCTCCACCTCCCTTCCATCCTGGACAAGATGCCTGCACCCGGCGCACTCATCCTCCTGGCGGCCGTCTCCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209617.2
CDS TCA 72 bp CCGATGCACGCGGGACGGATGGAAGGATGGACAGACTaGCGGACGCGTGGAGAGCCGGGTGGCGAGGCGGAG +
Preference number: 6 (lower is better)
Translates to: PMHAGRMEGWTD*RTRGEPGGEAE
Trigger: CTCCGCCTCGCCACCCGGCTCTCCACGCGTCCGTCAGTCTGTCCATCCTTCCATCCGTCCCGCGTGCATCGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209351.2
CDS GCA 72 bp GCAGCCGGAGGCGGAGACGGCCGCCAGGAGGATGAGTaGGCCGGGTGCAGGCATCTTGTCCAGGATGGAAGG +
Preference number: 6 (lower is better)
Translates to: AAGGGDGRQEDE*AGCRHLVQDGR
Trigger: CCTTCCATCCTGGACAAGATGCCTGCACCCGGCGCACTCATCCTCCTGGCGGCCGTCTCCGCCTCCGGCTGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209617.2
CDS CCA 72 bp GCTGGGTCCCCCTCCAAGGCTGCTGCTGTCCTCGCCTaGGGAGCTCTCTTCCTCCTCCTCTTCGGCCCAGGG +
Preference number: 6 (lower is better)
Translates to: AGSPSKAAAVLA*GALFLLLFGPG
Trigger: CCCTGGGCCGAAGAGGAGGAGGAAGAGAGCTCCCCAGGCGAGGACAGCAGCAGCCTTGGAGGGGGACCCAGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp CTGGCTTTCAGGGGCACTGGCTCCGGCCTCCTCTGTTaGGCCCCCAGTGGCTGTGGCGGAGGTGGCAGTGGT +
Preference number: 6 (lower is better)
Translates to: LAFRGTGSGLLC*APSGCGGGGSG
Trigger: ACCACTGCCACCTCCGCCACAGCCACTGGGGGCCCAACAGAGGAGGCCGGAGCCAGTGCCCCTGAAAGCCAG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS GCA 72 bp GGCGGAGACGGCCGCCAGGAGGATGAGTGCGCCGGGTaGAGGCATCTTGTCCAGGATGGAAGGGAGGTGGAG +
Preference number: 6 (lower is better)
Translates to: GGDGRQEDECAG*RHLVQDGREVE
Trigger: CTCCACCTCCCTTCCATCCTGGACAAGATGCCTGCACCCGGCGCACTCATCCTCCTGGCGGCCGTCTCCGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209617.2
CDS CCA 72 bp GGACCCCTGGCTCTTCCTCTTGGGCCACCTCCGGCCTaGCTTTCAGGGGCACTGGCTCCGGCCTCCTCTGTT +
Preference number: 6 (lower is better)
Translates to: GPLALPLGPPPA*LSGALAPASSV
Trigger: AACAGAGGAGGCCGGAGCCAGTGCCCCTGAAAGCCAGGCCGGAGGTGGCCCAAGAGGAAGAGCCAGGGGTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp TACGCTGGGGGCCATGTCTCCGCCGAGCCTGTTGTCTaGGACCCCTGGCTCTTCCTCTTGGGCCACCTCCGG +
Preference number: 6 (lower is better)
Translates to: YAGGHVSAEPVV*DPWLFLLGHLR
Trigger: CCGGAGGTGGCCCAAGAGGAAGAGCCAGGGGTCCCAGACAACAGGCTCGGCGGAGACATGGCCCCCAGCGTA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CAA 90 bp CCCCGGCCTGCCCCACGGCGGGCCTTCTCCCACAGGCACTCAAGGTaGAGGCCACGGCTGCTCTCGGTGACTGTGAGTACATCATCAGGG +
Preference number: 6 (lower is better)
Translates to: PRPAPRRAFSHRHSR*RPRLLSVTVSTSSG
Trigger: CCCTGATGATGTACTCACAGTCACCGAGAGCAGCCGTGGCCTCAACCTTGAGTGCCTGTGGGAGAAGGCCCGCCGTGGGGCAGGCCGGGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS GCA 72 bp GGCAGCTTGAGCCTGGGCCGGGCCAGCTTCACGTGCTaGTGGCGGACAACAAAGGCCAGGACCTCCTCATCC +
Preference number: 6 (lower is better)
Translates to: GSLSLGRASFTC*WRTTKARTSSS
Trigger: GGATGAGGAGGTCCTGGCCTTTGTTGTCCGCCAGCAGCACGTGAAGCTGGCCCGGCCCAGGCTCAAGCTGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp GGCCATGTCTCCGCCGAGCCTGTTGTCTGGGACCCCTaGCTCTTCCTCTTGGGCCACCTCCGGCCTGGCTTT +
Preference number: 6 (lower is better)
Translates to: GHVSAEPVVWDP*LFLLGHLRPGF
Trigger: AAAGCCAGGCCGGAGGTGGCCCAAGAGGAAGAGCCAGGGGTCCCAGACAACAGGCTCGGCGGAGACATGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp CTGCTGAACTACAAAGGTTGGCTTCTCCTGGGACCCTaGGAGTGGGAGGGGACCCGGGTCTGGGGGTGGCCG +
Preference number: 6 (lower is better)
Translates to: LLNYKGWLLLGP*EWEGTRVWGWP
Trigger: CGGCCACCCCCAGACCCGGGTCCCCTCCCACTCCCAGGGTCCCAGGAGAAGCCAACCTTTGTAGTTCAGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS CAA 72 bp TCGTCTACGCTGGGGGCCATGTCTCCGCCGAGCCTGTaGTCTGGGACCCCTGGCTCTTCCTCTTGGGCCACC +
Preference number: 6 (lower is better)
Translates to: SSTLGAMSPPSL*SGTPGSSSWAT
Trigger: GGTGGCCCAAGAGGAAGAGCCAGGGGTCCCAGACAACAGGCTCGGCGGAGACATGGCCCCCAGCGTAGACGA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CAA 72 bp GCCGCCAGGAGGATGAGTGCGCCGGGTGCAGGCATCTaGTCCAGGATGGAAGGGAGGTGGAGGAATCGGCGG +
Preference number: 6 (lower is better)
Translates to: AARRMSAPGAGI*SRMEGRWRNRR
Trigger: CCGCCGATTCCTCCACCTCCCTTCCATCCTGGACAAGATGCCTGCACCCGGCGCACTCATCCTCCTGGCGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000209617.2
CDS GCA 72 bp TGGGGAGCTCTCTTCCTCCTCCTCTTCGGCCCAGGGTaGGGTACCCTGTTCCCCAAGCACCTCGGCAGGATC +
Preference number: 6 (lower is better)
Translates to: WGALFLLLFGPG*GTLFPKHLGRI
Trigger: GATCCTGCCGAGGTGCTTGGGGAACAGGGTACCGCACCCTGGGCCGAAGAGGAGGAGGAAGAGAGCTCCCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp CCTCCTCTGTTGGGCCCCCAGTGGCTGTGGCGGAGGTaGCAGTGGTCTCGAGTTGTCTACCCATCCGGCCTT +
Preference number: 6 (lower is better)
Translates to: PPLLGPQWLWRR*QWSRVVYPSGL
Trigger: AAGGCCGGATGGGTAGACAACTCGAGACCACTGCCACCTCCGCCACAGCCACTGGGGGCCCAACAGAGGAGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp GTTCCCCTGAGGTGGTCCCAAGTCCAGGAACAAGCGTaGCATCTCGGGGCCCTTCCTCTCCGGCTTGAGGGG +
Preference number: 6 (lower is better)
Translates to: VPLRWSQVQEQA*HLGALPLRLEG
Trigger: CCCCTCAAGCCGGAGAGGAAGGGCCCCGAGATGCCACGCTTGTTCCTGGACTTGGGACCACCTCAGGGGAAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp GGAGTTGATGGCTCCGTGTCCCCCTCGGGGGTGCCCTaGACGCTCAACTCGTTGGTTGGAGTCTCCTGGTCG +
Preference number: 6 (lower is better)
Translates to: GVDGSVSPSGVP*TLNSLVGVSWS
Trigger: CGACCAGGAGACTCCAACCAACGAGTTGAGCGTCCAGGGCACCCCCGAGGGGGACACGGAGCCATCAACTCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CAA 72 bp GCCCCACGGCGGGCCTTCTCCCACAGGCACTCAAGGTaGAGGCCACGGCTGCTCTCGGTGACTGTGAGTACA +
Preference number: 6 (lower is better)
Translates to: APRRAFSHRHSR*RPRLLSVTVST
Trigger: TGTACTCACAGTCACCGAGAGCAGCCGTGGCCTCAACCTTGAGTGCCTGTGGGAGAAGGCCCGCCGTGGGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CAA 72 bp CCCAGTGGCTGTGGCGGAGGTGGCAGTGGTCTCGAGTaGTCTACCCATCCGGCCTTTGCGTCCACGGCGCTT +
Preference number: 6 (lower is better)
Translates to: PSGCGGGGSGLE*STHPAFASTAL
Trigger: AAGCGCCGTGGACGCAAAGGCCGGATGGGTAGACAACTCGAGACCACTGCCACCTCCGCCACAGCCACTGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp AGCTTGAGCCTGGGCCGGGCCAGCTTCACGTGCTGCTaGCGGACAACAAAGGCCAGGACCTCCTCATCCGAT +
Preference number: 6 (lower is better)
Translates to: SLSLGRASFTCC*RTTKARTSSSD
Trigger: ATCGGATGAGGAGGTCCTGGCCTTTGTTGTCCGCCAGCAGCACGTGAAGCTGGCCCGGCCCAGGCTCAAGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CAA 90 bp CTCCCAGAGTGTCACCCCCAGGGACCAGACATTACTCTCCCGGCTTaGATCTACCAGCACGAAGCTGCCGTGCAGCTCGCCCAGCAGCTC +
Preference number: 6 (lower is better)
Translates to: LPECHPQGPDITLPA*IYQHEAAVQLAQQL
Trigger: GAGCTGCTGGGCGAGCTGCACGGCAGCTTCGTGCTGGTAGATCAAAGCCGGGAGAGTAATGTCTGGTCCCTGGGGGTGACACTCTGGGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS TCA 72 bp TCACTGGAAGGCTCCTGCTGGGGACTTTCTTCCTGCTaGCCAGGGATGTCAGGTCCCTGTTCGGGCCTGGGC +
Preference number: 6 (lower is better)
Translates to: SLEGSCWGLSSC*PGMSGPCSGLG
Trigger: GCCCAGGCCCGAACAGGGACCTGACATCCCTGGTCAGCAGGAAGAAAGTCCCCAGCAGGAGCCTTCCAGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS CCA 72 bp GGGTGGACAGCGCCTCATAGAAGGGATTGGATGGATTaGTATGGGGCGCAGGAGGCGCAGAAGCGGGTTGCC +
Preference number: 6 (lower is better)
Translates to: GWTAPHRRDWMD*YGAQEAQKRVA
Trigger: GGCAACCCGCTTCTGCGCCTCCTGCGCCCCATACCAATCCATCCAATCCCTTCTATGAGGCGCTGTCCACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp GCTAGGGGTGGACAGCGCCTCATAGAAGGGATTGGATaGATTGGTATGGGGCGCAGGAGGCGCAGAAGCGGG +
Preference number: 6 (lower is better)
Translates to: ARGGQRLIEGIG*IGMGRRRRRSG
Trigger: CCCGCTTCTGCGCCTCCTGCGCCCCATACCAATCCATCCAATCCCTTCTATGAGGCGCTGTCCACCCCTAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS CCA 72 bp TGTCCCCCTCGGGGGTGCCCTGGACGCTCAACTCGTTaGTTGGAGTCTCCTGGTCGAAGAGGTAGACGGTCA +
Preference number: 6 (lower is better)
Translates to: CPPRGCPGRSTR*LESPGRRGRRS
Trigger: TGACCGTCTACCTCTTCGACCAGGAGACTCCAACCAACGAGTTGAGCGTCCAGGGCACCCCCGAGGGGGACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS TCA 72 bp TCCCGTAGGGACATCAGCAGCTGCTCGGTGCTCACCTaGACTACAAAGGTTGGCTTCTCCTGGGACCCTGGG +
Preference number: 6 (lower is better)
Translates to: SRRDISSCSVLT*TTKVGFSWDPG
Trigger: CCCAGGGTCCCAGGAGAAGCCAACCTTTGTAGTTCAGGTGAGCACCGAGCAGCTGCTGATGTCCCTACGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS GCA 72 bp GAAAACCTCCCCGAGGATCACAGGCCCAGAATCCGATaGACGCGGGACGGATGGAAGGATGGACAGACTGAC +
Preference number: 6 (lower is better)
Translates to: ENLPEDHRPRIR*TRDGWKDGQTD
Trigger: GTCAGTCTGTCCATCCTTCCATCCGTCCCGCGTGCATCGGATTCTGGGCCTGTGATCCTCGGGGAGGTTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209351.2
CDS TCA 72 bp CGGGAGAGTTTGGCTTTGATCTGCTCGCTGTTCCCCTaGGGTGGTCCCAAGTCCAGGAACAAGCGTGGCATC +
Preference number: 6 (lower is better)
Translates to: RESLALICSLFP*GGPKSRNKRGI
Trigger: GATGCCACGCTTGTTCCTGGACTTGGGACCACCTCAGGGGAACAGCGAGCAGATCAAAGCCAAACTCTCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS TCA 72 bp GAGTTCCTTCACCACCACCTGGGCTGGCGAGTAGTCTaGGAAAACCTCCCCGAGGATCACAGGCCCAGAATC +
Preference number: 6 (lower is better)
Translates to: EFLHHHLGWRVV*ENLPEDHRPRI
Trigger: GATTCTGGGCCTGTGATCCTCGGGGAGGTTTTCTCAGACTACTCGCCAGCCCAGGTGGTGGTGAAGGAACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000209351.2
CDS CCA 72 bp GAGTTTGGCTTTGATCTGCTCGCTGTTCCCCTGAGGTaGTCCCAAGTCCAGGAACAAGCGTGGCATCTCGGG +
Preference number: 6 (lower is better)
Translates to: EFGFDLLAVPLR*SQVQEQAWHLG
Trigger: CCCGAGATGCCACGCTTGTTCCTGGACTTGGGACCACCTCAGGGGAACAGCGAGCAGATCAAAGCCAAACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000233503.2
CDS TCA 72 bp GAGTTCCTTCACCACCACCTGGGCTGGCGAGTAGTCTaGGAAAACCTCCCCGAGGATCACCTTCCCAAACCA +
Preference number: 6 (lower is better)
Translates to: EFLHHHLGWRVV*ENLPEDHLPKP
Trigger: TGGTTTGGGAAGGTGATCCTCGGGGAGGTTTTCTCAGACTACTCGCCAGCCCAGGTGGTGGTGAAGGAACTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000209701.2
ENSMUST00000233503.2
CDS TCA 72 bp TCACTGGAAGGCTCCTGCTGGGGACTTTCTTCCTGCTaGACTACAAAGGTTGGCTTCTCCTGGGACCCTGGG +
Preference number: 6 (lower is better)
Translates to: SLEGSCWGLSSC*TTKVGFSWDPG
Trigger: CCCAGGGTCCCAGGAGAAGCCAACCTTTGTAGTTCAGCAGGAAGAAAGTCCCCAGCAGGAGCCTTCCAGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS GCA 72 bp TCACATCCTCCCGTAGGGACATCAGCAGCTGCTCGGTaGTCACCTGAACTACAAAGGTTGGCTTCTCCTGGG +
Preference number: 6 (lower is better)
Translates to: SHPPVGTSAAAR*SPELQRLASPG
Trigger: CCCAGGAGAAGCCAACCTTTGTAGTTCAGGTGAGCACCGAGCAGCTGCTGATGTCCCTACGGGAGGATGTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
CDS GCA 72 bp CACACAAGATTCTGCTCGCAAGCCCTCTTCTTGGGATaGAAAGGGGCTGGGTCTTTGGGGAGTCAGTTCTCC +
Preference number: 6 (lower is better)
Translates to: HTRFCSQALFLG*KGAGSLGSQFS
Trigger: GGAGAACTGACTCCCCAAAGACCCAGCCCCTTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS CCA 72 bp CCAGTCAGCCTGTGCTGTCCCAAGAGATTTCTGACATaGGTCAGCTATGAAGCACCTGTAGGGCTGAGCCTC +
Preference number: 6 (lower is better)
Translates to: PVSLCCPKRFLT*VSYEAPVGLSL
Trigger: GAGGCTCAGCCCTACAGGTGCTTCATAGCTGACCCATGTCAGAAATCTCTTGGGACAGCACAGGCTGACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211127.2
CDS CAA 72 bp ATCGTCCACACAAGATTCTGCTCGCAAGCCCTCTTCTaGGGATGCAAAGGGGCTGGGTCTTTGGGGAGTCAG +
Preference number: 6 (lower is better)
Translates to: IVHTRFCSQALF*GCKGAGSLGSQ
Trigger: CTGACTCCCCAAAGACCCAGCCCCTTTGCATCCCAAGAAGAGGGCTTGCGAGCAGAATCTTGTGTGGACGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000233503.2
CDS GCA 72 bp AGAGGCAGGAAGGACACTGAGCATCCAGTCAGCCTGTaGTGTCCCAAGAGATTTCTGACATGGGTCAGCTAT +
Preference number: 6 (lower is better)
Translates to: RGRKDTEHPVSL*CPKRFLTWVSY
Trigger: ATAGCTGACCCATGTCAGAAATCTCTTGGGACAGCACAGGCTGACTGGATGCTCAGTGTCCTTCCTGCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211127.2
CDS TCA 72 bp GATGGAACTTGTAAAACTCAGAGGCAGGAAGGACACTaGGCATCCAGTCAGCCTGTGCTGTCCCAAGAGATT +
Preference number: 6 (lower is better)
Translates to: DGTCKTQRQEGH*ASSQPVLSQEI
Trigger: AATCTCTTGGGACAGCACAGGCTGACTGGATGCTCAGTGTCCTTCCTGCCTCTGAGTTTTACAAGTTCCATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211127.2
CDS CAA 72 bp GGGTTCTCAAACTCCTTGAAACGAACATCACCCCGTTaGCAACACAGACAGGTAAGGAGGAGAAAGATGAAG +
Preference number: 6 (lower is better)
Translates to: GFSNSLKRTSPR*QHRQVRRRKMK
Trigger: CTTCATCTTTCTCCTCCTTACCTGTCTGTGTTGCAAACGGGGTGATGTTCGTTTCAAGGAGTTTGAGAACCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000072580.12
ENSMUST00000120005.10
ENSMUST00000209617.2
ENSMUST00000209701.2
ENSMUST00000211609.2
ENSMUST00000233503.2