Pregenerated sensors for LMO4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028266Ensembl transcript IDs: ENSMUST00000120539.8, ENSMUST00000121112.6, ENSMUST00000121796.8, ENSMUST00000196264.5, ENSMUST00000197652.2
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTCAAGACTAAAGGGGGCGCGATGGCATGGTGCTGGCTACAAAGGTaGCTGGTCTACTGCAGACACATGGGATCCACCTGGGATGAGCAA | + |
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Preference number: 1 (lower is better) Translates to: LKTKGGAMAWCWLQR*LVYCRHMGSTWDEQ Trigger: TTGCTCATCCCAGGTGGATCCCATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCCCCTTTAGTCTTGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| 3UTR CCA 90 bp | AGACTAAAGGGGGCGCGATGGCATGGTGCTGGCTACAAAGGTGACTaGTCTACTGCAGACACATGGGATCCACCTGGGATGAGCAATTCT | + |
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Preference number: 1 (lower is better) Translates to: RLKGARWHGAGYKGD*STADTWDPPGMSNS Trigger: AGAATTGCTCATCCCAGGTGGATCCCATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCCCCTTTAGTCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| 3UTR-3UTR TCA 90 bp | AGGGGGCGCGATGGCATGGTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACATGGGATGAGCAATTCTaGGATGAAGGCACGCATTCT | + |
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Preference number: 2 (lower is better) Translates to: RGRDGMVLATKVTGLLQTWDEQF*DEGTHS Trigger: AGAATGCGTGCCTTCATCTCAGAATTGCTCATCCCA...TGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| 3UTR-3UTR CCA 90 bp | CAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGCATGGTGCTGGCTACAAATCTACTGCAGACACATaGGATCCACCTGGGATGAGC | + |
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Preference number: 2 (lower is better) Translates to: QEGYSRLKGARWHGAGYKSTADT*DPPGMS Trigger: GCTCATCCCAGGTGGATCCCATGTGTCTGCAGTAGA...TTTGTAGCCAGCACCATGCCATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| 3UTR-3UTR CCA 90 bp | TACCATCTCCCATTAGCCCAGGTTCATGGAGTCCTTAATGTTCATATTCAGTCATCTACTGCAGACACATaGGATCCACCTGGGATGAGC | + |
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Preference number: 2 (lower is better) Translates to: YHLPLAQVHGVLNVHIQSSTADT*DPPGMS Trigger: GCTCATCCCAGGTGGATCCCATGTGTCTGCAGTAGA...TGACTGAATATGAACATTAAGGACTCCATGAACCTGGGCTAATGGGAGATGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| 3UTR-3UTR TCA 90 bp | TTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGTGGGATGAGCAATTCTaGGATGAAGGCACGCATTCT | + |
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Preference number: 2 (lower is better) Translates to: FNTPINAGRVLKTKGGAMWDEQF*DEGTHS Trigger: AGAATGCGTGCCTTCATCTCAGAATTGCTCATCCCA...CATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| 3UTR-3UTR CCA 90 bp | AGTCATTTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCTCTACTGCAGACACATaGGATCCACCTGGGATGAGC | + |
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Preference number: 2 (lower is better) Translates to: SHFNTPINAGRVLKTKGGSTADT*DPPGMS Trigger: GCTCATCCCAGGTGGATCCCATGTGTCTGCAGTAGA...GCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAAATGACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| 3UTR-3UTR TCA 90 bp | TTCAGTCATTTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGTGCTGGCTACAAAGGTaGCTGGTCTACTGCAGACAC | + |
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Preference number: 2 (lower is better) Translates to: FSHFNTPINAGRVLKTKGCWLQR*LVYCRH Trigger: GTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCA...CCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAAATGACTGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| 3UTR-3UTR TCA 90 bp | TTGTTAATGAGGGTAGAAAGCAGATTGGTGATGCTTCGTTTAATTAGCTTCATTTGGGATGAGCAATTCTaGGATGAAGGCACGCATTCT | + |
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Preference number: 2 (lower is better) Translates to: LLMRVESRLVMLRLISFIWDEQF*DEGTHS Trigger: AGAATGCGTGCCTTCATCTCAGAATTGCTCATCCCA...AATGAAGCTAATTAAACGAAGCATCACCAATCTGCTTTCTACCCTCATTAACAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| 3UTR CCA 72 bp | GGGGCGCGATGGCATGGTGCTGGCTACAAAGGTGACTaGTCTACTGCAGACACATGGGATCCACCTGGGATG | + |
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Preference number: 3 (lower is better) Translates to: GARWHGAGYKGD*STADTWDPPGM Trigger: CATCCCAGGTGGATCCCATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| 3UTR TCA 72 bp | AAAGGGGGCGCGATGGCATGGTGCTGGCTACAAAGGTaGCTGGTCTACTGCAGACACATGGGATCCACCTGG | + |
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Preference number: 3 (lower is better) Translates to: KGGAMAWCWLQR*LVYCRHMGSTW Trigger: CCAGGTGGATCCCATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCCCCTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| 3UTR CCA 72 bp | ATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATaGCATGGTGCTGGCTACAAAGGTGACTGGTCTACT | + |
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Preference number: 3 (lower is better) Translates to: MQEGYSRLKGAR*HGAGYKGDWST Trigger: AGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | GGGCGCGATGGCATGGTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACACATGTCACCGGGGGCGGCTaGGAGCTGCTGCCCGGATTC | + |
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Preference number: 4 (lower is better) Translates to: GRDGMVLATKVTGLLQTHVTGGG*ELLPGF Trigger: GAATCCGGGCAGCAGCTCGCAGCCGCCCCCGGTGAC...ATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | AATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGCATGGTGCTGGCTAGTCACCGGGGGCGGCTaGGAGCTGCTGCCCGGATTC | + |
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Preference number: 4 (lower is better) Translates to: NAGRVLKTKGGAMAWCWLVTGGG*ELLPGF Trigger: GAATCCGGGCAGCAGCTCGCAGCCGCCCCCGGTGAC...TAGCCAGCACCATGCCATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | GGCATGGTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACACATGGGATCCACAGCGGTCCGCGATCTTaGCCCCGCAGCCTGCGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: GMVLATKVTGLLQTHGIHSGPRS*PRSLRS Trigger: GCTGCGCAGGCTGCGGGGGCAAGATCGCGGACCGCT...GTGGATCCCATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | GGCATGGTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACACATGGGATCCACCTTGCCCCCGCAGCCTaGGCAGCGCTTCCAGGAGAG | + |
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Preference number: 4 (lower is better) Translates to: GMVLATKVTGLLQTHGIHLAPAA*AALPGE Trigger: CTCTCCTGGAAGCGCTGCGCAGGCTGCGGGGGCAAG...GTGGATCCCATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR TCA 90 bp | GGGCGCGATGGCATGGTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACACATGGCAGCAGGAGCACTTaGGGCAGCGGCTATGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: GRDGMVLATKVTGLLQTHGSRST*GSGYAS Trigger: ACTGGCATAGCCGCTGCCTCAAGTGCTCCTGCTGCC...ATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | AATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGCATGGTGCTGGCTACCAATGTCGCCCAGCTaGGCCTGGCAGCAGGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: NAGRVLKTKGGAMAWCWLPMSPS*AWQQEH Trigger: GTGCTCCTGCTGCCAGGCGCAGCTGGGCGACATTGG...TAGCCAGCACCATGCCATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR TCA 90 bp | AATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGCATGGTGCTGGCTAGGCAGCAGGAGCACTTaGGGCAGCGGCTATGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: NAGRVLKTKGGAMAWCWLGSRST*GSGYAS Trigger: ACTGGCATAGCCGCTGCCTCAAGTGCTCCTGCTGCC...TAGCCAGCACCATGCCATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | TGGTCTACTGCAGACACATGGGATCCACCTGGGATGAGCAATTCTGAGATGAAGAGCGGTCCGCGATCTTaGCCCCGCAGCCTGCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: WSTADTWDPPGMSNSEMKSGPRS*PRSLRS Trigger: GCTGCGCAGGCTGCGGGGGCAAGATCGCGGACCGCT...CTTCATCTCAGAATTGCTCATCCCAGGTGGATCCCATGTGTCTGCAGTAGACCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | TGGTCTACTGCAGACACATGGGATCCACCTGGGATGAGCAATTCTGAGATGAAGCCAATGTCGCCCAGCTaGGCCTGGCAGCAGGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: WSTADTWDPPGMSNSEMKPMSPS*AWQQEH Trigger: GTGCTCCTGCTGCCAGGCGCAGCTGGGCGACATTGG...CTTCATCTCAGAATTGCTCATCCCAGGTGGATCCCATGTGTCTGCAGTAGACCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | GTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACACATGGGATCCACCTGGGATGGTGTAACAGGACGTaGCAATGTCGCCCAGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: VLATKVTGLLQTHGIHLGWCNRT*QCRPAA Trigger: CGCAGCTGGGCGACATTGGCACGTCCTGTTACACCA...TCCCAGGTGGATCCCATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | AATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGCATGGTGCTGGCTATGGTGTAACAGGACGTaGCAATGTCGCCCAGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: NAGRVLKTKGGAMAWCWLWCNRT*QCRPAA Trigger: CGCAGCTGGGCGACATTGGCACGTCCTGTTACACCA...TAGCCAGCACCATGCCATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR CCA 90 bp | AGGGGGCGCGATGGCATGGTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACAGGATCATGCCGCTCTTaGTGTAACAGGACGTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: RGRDGMVLATKVTGLLQTGSCRS*CNRTCQ Trigger: TTGGCACGTCCTGTTACACCAAGAGCGGCATGATCC...TGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCCCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | ACTGCAGACACATGGGATCCACCTGGGATGAGCAATTCTGAGATGAAGGCACGCTGGTGTAACAGGACGTaGCAATGTCGCCCAGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: TADTWDPPGMSNSEMKARWCNRT*QCRPAA Trigger: CGCAGCTGGGCGACATTGGCACGTCCTGTTACACCA...GCGTGCCTTCATCTCAGAATTGCTCATCCCAGGTGGATCCCATGTGTCTGCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | TACCATCTCCCATTAGCCCAGGTTCATGGAGTCCTTAATGTTCATATTCAGTCAGTCACCGGGGGCGGCTaGGAGCTGCTGCCCGGATTC | + |
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Preference number: 4 (lower is better) Translates to: YHLPLAQVHGVLNVHIQSVTGGG*ELLPGF Trigger: GAATCCGGGCAGCAGCTCGCAGCCGCCCCCGGTGAC...TGACTGAATATGAACATTAAGGACTCCATGAACCTGGGCTAATGGGAGATGGTA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | AGGGGGCGCGATGGCATGGTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACATTCTGCAAAGGATCATaGCGCTCTTGGTGTAACAGG | + |
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Preference number: 4 (lower is better) Translates to: RGRDGMVLATKVTGLLQTFCKGS*RSWCNR Trigger: CCTGTTACACCAAGAGCGGCATGATCCTTTGCAGAA...TGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCCCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | GTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACACATGGGATCCACCTGGGAACTGTCCACAGGCACTaGAAGCACCGCTATTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: VLATKVTGLLQTHGIHLGTVHRH*KHRYSQ Trigger: TTGGGAATAGCGGTGCTTGCAGTGCCTGTGGACAGT...TCCCAGGTGGATCCCATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS-3UTR GCA 90 bp | GGGCGCGATGGCATGGTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACACATCATGACGAGCTCACTTaGAGGAATCGACTGTCCACA | + |
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Preference number: 4 (lower is better) Translates to: GRDGMVLATKVTGLLQTHHDELT*RNRLST Trigger: TGTGGACAGTCGATTCCTGCAAGTGAGCTCGTCATG...ATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS-3UTR CCA 90 bp | AATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGCATGGTGCTGGCTAGCCAGTAGCTGTCCATaGCATAGAGCAGAAAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: NAGRVLKTKGGAMAWCWLASSCP*HRAESG Trigger: ACCGCTTTCTGCTCTATGCCATGGACAGCTACTGGC...TAGCCAGCACCATGCCATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | GGCATGGTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACACATGGGATCCACCATGACGAGCTCACTTaGAGGAATCGACTGTCCACA | + |
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Preference number: 4 (lower is better) Translates to: GMVLATKVTGLLQTHGIHHDELT*RNRLST Trigger: TGTGGACAGTCGATTCCTGCAAGTGAGCTCGTCATG...GTGGATCCCATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS-3UTR CCA 90 bp | TACCATCTCCCATTAGCCCAGGTTCATGGAGTCCTTAATGTTCATATTCAGTCATCGCCCAGCTGCGCCTaGCAGCAGGAGCACTTGAGG | + |
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Preference number: 4 (lower is better) Translates to: YHLPLAQVHGVLNVHIQSSPSCA*QQEHLR Trigger: CCTCAAGTGCTCCTGCTGCCAGGCGCAGCTGGGCGA...TGACTGAATATGAACATTAAGGACTCCATGAACCTGGGCTAATGGGAGATGGTA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR CCA 90 bp | ACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGCATGGGGATCATGCCGCTCTTaGTGTAACAGGACGTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: TPINAGRVLKTKGGAMAWGSCRS*CNRTCQ Trigger: TTGGCACGTCCTGTTACACCAAGAGCGGCATGATCC...CCATGCCATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR TCA 90 bp | TACCATCTCCCATTAGCCCAGGTTCATGGAGTCCTTAATGTTCATATTCAGTCAGGCAGCAGGAGCACTTaGGGCAGCGGCTATGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: YHLPLAQVHGVLNVHIQSGSRST*GSGYAS Trigger: ACTGGCATAGCCGCTGCCTCAAGTGCTCCTGCTGCC...TGACTGAATATGAACATTAAGGACTCCATGAACCTGGGCTAATGGGAGATGGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | TTCAGTCATTTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGTCACCGGGGGCGGCTaGGAGCTGCTGCCCGGATTC | + |
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Preference number: 4 (lower is better) Translates to: FSHFNTPINAGRVLKTKGVTGGG*ELLPGF Trigger: GAATCCGGGCAGCAGCTCGCAGCCGCCCCCGGTGAC...CCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAAATGACTGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | TTCAGTCATTTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGAGCGGTCCGCGATCTTaGCCCCGCAGCCTGCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: FSHFNTPINAGRVLKTKGSGPRS*PRSLRS Trigger: GCTGCGCAGGCTGCGGGGGCAAGATCGCGGACCGCT...CCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAAATGACTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | GGTGACTGGTCTACTGCAGACACATGGGATCCACCTGGGATGAGCAATTCTGAGTTCTGCAAAGGATCATaGCGCTCTTGGTGTAACAGG | + |
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Preference number: 4 (lower is better) Translates to: GDWSTADTWDPPGMSNSEFCKGS*RSWCNR Trigger: CCTGTTACACCAAGAGCGGCATGATCCTTTGCAGAA...CTCAGAATTGCTCATCCCAGGTGGATCCCATGTGTCTGCAGTAGACCAGTCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | ACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGCATGGCATGACGAGCTCACTTaGAGGAATCGACTGTCCACA | + |
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Preference number: 4 (lower is better) Translates to: TPINAGRVLKTKGGAMAWHDELT*RNRLST Trigger: TGTGGACAGTCGATTCCTGCAAGTGAGCTCGTCATG...CCATGCCATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS-3UTR TCA 90 bp | AATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGCATGGTGCTGGCTAAGTAGTGGATTGCTCTaGAGTGAATTCAAATGGCCA | + |
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Preference number: 4 (lower is better) Translates to: NAGRVLKTKGGAMAWCWLSSGLL*SEFKWP Trigger: TGGCCATTTGAATTCACTTCAGAGCAATCCACTACT...TAGCCAGCACCATGCCATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS-3UTR GCA 90 bp | TTAATGAGGGTAGAAAGCAGATTGGTGATGCTTCGTTTAATTAGCTTCATTAGTAGCGGTCCGCGATCTTaGCCCCGCAGCCTGCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LMRVESRLVMLRLISFISSGPRS*PRSLRS Trigger: GCTGCGCAGGCTGCGGGGGCAAGATCGCGGACCGCT...ACTAATGAAGCTAATTAAACGAAGCATCACCAATCTGCTTTCTACCCTCATTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | TACCATCTCCCATTAGCCCAGGTTCATGGAGTCCTTAATGTTCATATTCAGTCATGGTGTAACAGGACGTaGCAATGTCGCCCAGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: YHLPLAQVHGVLNVHIQSWCNRT*QCRPAA Trigger: CGCAGCTGGGCGACATTGGCACGTCCTGTTACACCA...TGACTGAATATGAACATTAAGGACTCCATGAACCTGGGCTAATGGGAGATGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR CCA 90 bp | TTTCATCCTCGCTACCATCTCCCATTAGCCCAGGTTCATGGAGTCCTTAATGTTGCCAGTAGCTGTCCATaGCATAGAGCAGAAAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: FHPRYHLPLAQVHGVLNVASSCP*HRAESG Trigger: ACCGCTTTCTGCTCTATGCCATGGACAGCTACTGGC...AACATTAAGGACTCCATGAACCTGGGCTAATGGGAGATGGTAGCGAGGATGAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR TCA 90 bp | TTCAGTCATTTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCAGCAGGAGCACTTaGGGCAGCGGCTATGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: FSHFNTPINAGRVLKTKGGSRST*GSGYAS Trigger: ACTGGCATAGCCGCTGCCTCAAGTGCTCCTGCTGCC...CCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAAATGACTGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | TTGTTAATGAGGGTAGAAAGCAGATTGGTGATGCTTCGTTTAATTAGCTTCATTCCAATGTCGCCCAGCTaGGCCTGGCAGCAGGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: LLMRVESRLVMLRLISFIPMSPS*AWQQEH Trigger: GTGCTCCTGCTGCCAGGCGCAGCTGGGCGACATTGG...AATGAAGCTAATTAAACGAAGCATCACCAATCTGCTTTCTACCCTCATTAACAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR CCA 90 bp | TTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGCCAGTAGCTGTCCATaGCATAGAGCAGAAAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: FNTPINAGRVLKTKGGAMASSCP*HRAESG Trigger: ACCGCTTTCTGCTCTATGCCATGGACAGCTACTGGC...CATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR CCA 90 bp | TTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGGATCATGCCGCTCTTaGTGTAACAGGACGTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: FNTPINAGRVLKTKGGAMGSCRS*CNRTCQ Trigger: TTGGCACGTCCTGTTACACCAAGAGCGGCATGATCC...CATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | TACCATCTCCCATTAGCCCAGGTTCATGGAGTCCTTAATGTTCATATTCAGTCAACTGTCCACAGGCACTaGAAGCACCGCTATTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: YHLPLAQVHGVLNVHIQSTVHRH*KHRYSQ Trigger: TTGGGAATAGCGGTGCTTGCAGTGCCTGTGGACAGT...TGACTGAATATGAACATTAAGGACTCCATGAACCTGGGCTAATGGGAGATGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS-3UTR CCA 90 bp | TACCATCTCCCATTAGCCCAGGTTCATGGAGTCCTTAATGTTCATATTCAGTCAGCCAGTAGCTGTCCATaGCATAGAGCAGAAAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: YHLPLAQVHGVLNVHIQSASSCP*HRAESG Trigger: ACCGCTTTCTGCTCTATGCCATGGACAGCTACTGGC...TGACTGAATATGAACATTAAGGACTCCATGAACCTGGGCTAATGGGAGATGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR CCA 90 bp | TACCATCTCCCATTAGCCCAGGTTCATGGAGTCCTTAATGTTCATATTCAGTCAGGATCATGCCGCTCTTaGTGTAACAGGACGTGCCAA | + |
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Preference number: 4 (lower is better) Translates to: YHLPLAQVHGVLNVHIQSGSCRS*CNRTCQ Trigger: TTGGCACGTCCTGTTACACCAAGAGCGGCATGATCC...TGACTGAATATGAACATTAAGGACTCCATGAACCTGGGCTAATGGGAGATGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | TTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGTTCTGCAAAGGATCATaGCGCTCTTGGTGTAACAGG | + |
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Preference number: 4 (lower is better) Translates to: FNTPINAGRVLKTKGGAMFCKGS*RSWCNR Trigger: CCTGTTACACCAAGAGCGGCATGATCCTTTGCAGAA...CATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR GCA 90 bp | AGTCATTTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCACTGTCCACAGGCACTaGAAGCACCGCTATTCCCAA | + |
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Preference number: 4 (lower is better) Translates to: SHFNTPINAGRVLKTKGGTVHRH*KHRYSQ Trigger: TTGGGAATAGCGGTGCTTGCAGTGCCTGTGGACAGT...GCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAAATGACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS-3UTR TCA 90 bp | TTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGAGTAGTGGATTGCTCTaGAGTGAATTCAAATGGCCA | + |
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Preference number: 4 (lower is better) Translates to: FNTPINAGRVLKTKGGAMSSGLL*SEFKWP Trigger: TGGCCATTTGAATTCACTTCAGAGCAATCCACTACT...CATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS-3UTR GCA 90 bp | AGTCATTTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCTTCTGCAAAGGATCATaGCGCTCTTGGTGTAACAGG | + |
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Preference number: 4 (lower is better) Translates to: SHFNTPINAGRVLKTKGGFCKGS*RSWCNR Trigger: CCTGTTACACCAAGAGCGGCATGATCCTTTGCAGAA...GCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAAATGACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR TCA 90 bp | TTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGAAAATAAACTGCCATTaGTGTAGTGAAACCGATCTC | + |
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Preference number: 4 (lower is better) Translates to: FNTPINAGRVLKTKGGAMKINCH*CSETDL Trigger: GAGATCGGTTTCACTACATCAATGGCAGTTTATTTT...CATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS TCA 90 bp | AGGACGTGCCAATGTCGCCCAGCTGCGCCTGGCAGCAGGAGCACTTaGGGCAGCGGCTATGCCAGTAGCTGTCCATGGCATAGAGCAGAA | + |
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Preference number: 5 (lower is better) Translates to: RTCQCRPAAPGSRST*GSGYASSCPWHRAE Trigger: TTCTGCTCTATGCCATGGACAGCTACTGGCATAGCCGCTGCCTCAAGTGCTCCTGCTGCCAGGCGCAGCTGGGCGACATTGGCACGTCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 ENSMUST00000197652.2 |
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| CDS-3UTR CAA 90 bp | AGGGGGCGCGATGGCATGGTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACATGGCAGCAGGAGCACTaGAGGCAGCGGCTATGCCAG | + |
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Preference number: 5 (lower is better) Translates to: RGRDGMVLATKVTGLLQTWQQEH*RQRLCQ Trigger: CTGGCATAGCCGCTGCCTCAAGTGCTCCTGCTGCCA...TGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR CAA 90 bp | AATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGCATGGTGCTGGCTATGGCAGCAGGAGCACTaGAGGCAGCGGCTATGCCAG | + |
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Preference number: 5 (lower is better) Translates to: NAGRVLKTKGGAMAWCWLWQQEH*RQRLCQ Trigger: CTGGCATAGCCGCTGCCTCAAGTGCTCCTGCTGCCA...TAGCCAGCACCATGCCATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR CAA 90 bp | AGGGGGCGCGATGGCATGGTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACAATGATACACGTTGCCTaGGGCCCTCATGACGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: RGRDGMVLATKVTGLLQTMIHVA*GPHDEL Trigger: GAGCTCGTCATGAGGGCCCAAGGCAACGTGTATCAT...TGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCCCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS-3UTR CAA 90 bp | ACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCGCGATGGCATGGTGGCAGCAGGAGCACTaGAGGCAGCGGCTATGCCAG | + |
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Preference number: 5 (lower is better) Translates to: TPINAGRVLKTKGGAMAWWQQEH*RQRLCQ Trigger: CTGGCATAGCCGCTGCCTCAAGTGCTCCTGCTGCCA...CCATGCCATCGCGCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS GCA 90 bp | CTTGAGATGATACACGTTGCCTTGGGCCCTCATGACGAGCTCACTTaGAGGAATCGACTGTCCACAGGCACTGCAAGCACCGCTATTCCC | + |
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Preference number: 5 (lower is better) Translates to: LEMIHVALGPHDELT*RNRLSTGTASTAIP Trigger: GGGAATAGCGGTGCTTGCAGTGCCTGTGGACAGTCGATTCCTGCAAGTGAGCTCGTCATGAGGGCCCAAGGCAACGTGTATCATCTCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000197652.2 |
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| CDS-3UTR CAA 90 bp | GTGCTGGCTACAAAGGTGACTGGTCTACTGCAGACACATGGGATCCACCTGGGAGAATTCAAATGGCCATaGATGAGGGCTGTGGGTCTA | + |
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Preference number: 5 (lower is better) Translates to: VLATKVTGLLQTHGIHLGEFKWP*MRAVGL Trigger: TAGACCCACAGCCCTCATCAATGGCCATTTGAATTC...TCCCAGGTGGATCCCATGTGTCTGCAGTAGACCAGTCACCTTTGTAGCCAGCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS-3UTR CAA 90 bp | TCAAGACTAAAGGGGGCGCGATGGCATGGTGCTGGCTACAAAGGTGACTGGTCTGAATTCAAATGGCCATaGATGAGGGCTGTGGGTCTA | + |
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Preference number: 5 (lower is better) Translates to: SRLKGARWHGAGYKGDWSEFKWP*MRAVGL Trigger: TAGACCCACAGCCCTCATCAATGGCCATTTGAATTC...AGACCAGTCACCTTTGTAGCCAGCACCATGCCATCGCGCCCCCTTTAGTCTTGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS-3UTR CAA 90 bp | AGTCATTTTAATACACCAATAAATGCAGGAAGGGTACTCAAGACTAAAGGGGGCTGGCAGCAGGAGCACTaGAGGCAGCGGCTATGCCAG | + |
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Preference number: 5 (lower is better) Translates to: SHFNTPINAGRVLKTKGGWQQEH*RQRLCQ Trigger: CTGGCATAGCCGCTGCCTCAAGTGCTCCTGCTGCCA...GCCCCCTTTAGTCTTGAGTACCCTTCCTGCATTTATTGGTGTATTAAAATGACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 |
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| CDS-3UTR CAA 90 bp | TTGTTAATGAGGGTAGAAAGCAGATTGGTGATGCTTCGTTTAATTAGCTTCATTGAATTCAAATGGCCATaGATGAGGGCTGTGGGTCTA | + |
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Preference number: 5 (lower is better) Translates to: LLMRVESRLVMLRLISFIEFKWP*MRAVGL Trigger: TAGACCCACAGCCCTCATCAATGGCCATTTGAATTC...AATGAAGCTAATTAAACGAAGCATCACCAATCTGCTTTCTACCCTCATTAACAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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| CDS TCA 72 bp | CAATGTCGCCCAGCTGCGCCTGGCAGCAGGAGCACTTaGGGCAGCGGCTATGCCAGTAGCTGTCCATGGCAT | + |
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Preference number: 6 (lower is better) Translates to: QCRPAAPGSRST*GSGYASSCPWH Trigger: ATGCCATGGACAGCTACTGGCATAGCCGCTGCCTCAAGTGCTCCTGCTGCCAGGCGCAGCTGGGCGACATTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 ENSMUST00000197652.2 |
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| CDS GCA 72 bp | TGCAAAGGATCATGCCGCTCTTGGTGTAACAGGACGTaGCAATGTCGCCCAGCTGCGCCTGGCAGCAGGAGC | + |
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Preference number: 6 (lower is better) Translates to: CKGSCRSWCNRT*QCRPAAPGSRS Trigger: GCTCCTGCTGCCAGGCGCAGCTGGGCGACATTGGCACGTCCTGTTACACCAAGAGCGGCATGATCCTTTGCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000196264.5 ENSMUST00000197652.2 |
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| CDS GCA 72 bp | ATACACGTTGCCTTGGGCCCTCATGACGAGCTCACTTaGAGGAATCGACTGTCCACAGGCACTGCAAGCACC | + |
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Preference number: 6 (lower is better) Translates to: IHVALGPHDELT*RNRLSTGTAST Trigger: GGTGCTTGCAGTGCCTGTGGACAGTCGATTCCTGCAAGTGAGCTCGTCATGAGGGCCCAAGGCAACGTGTAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 ENSMUST00000197652.2 |
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| CDS TCA 72 bp | CAGCAGACCTTCTGGTCTGGCAGTAGTGGATTGCTCTaGAGTGAATTCAAATGGCCATTGATGAGGGCTGTG | + |
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Preference number: 6 (lower is better) Translates to: QQTFWSGSSGLL*SEFKWPLMRAV Trigger: CACAGCCCTCATCAATGGCCATTTGAATTCACTTCAGAGCAATCCACTACTGCCAGACCAGAAGGTCTGCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000120539.8 ENSMUST00000121112.6 ENSMUST00000121796.8 |
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