Pregenerated sensors for LMO2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032698Ensembl transcript IDs: ENSMUST00000111139.3, ENSMUST00000111140.3, ENSMUST00000111143.8, ENSMUST00000123437.8, ENSMUST00000156813.8, ENSMUST00000170926.8
Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCTGTGACCATAAATTCTCTCTAAGGGCTGGTCCTTTTTGTCACTaGAGTCTCAGCCTTTGCATTATGTCATGTGATTGCTATGTCGTT | + |
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Preference number: 1 (lower is better) Translates to: ACDHKFSLRAGPFCH*SLSLCIMSCDCYVV Trigger: AACGACATAGCAATCACATGACATAATGCAAAGGCTGAGACTTCAGTGACAAAAAGGACCAGCCCTTAGAGAGAATTTATGGTCACAGGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| 3UTR TCA 90 bp | CTAAAAACAGTGATTCATCAACATCGCTATAAATATTTGTCTGGTTaGAAGATGTGGATTTCATTCCCAACTGAAATGTACCTCCATGCA | + |
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Preference number: 1 (lower is better) Translates to: LKTVIHQHRYKYLSG*KMWISFPTEMYLHA Trigger: TGCATGGAGGTACATTTCAGTTGGGAATGAAATCCACATCTTTCAACCAGACAAATATTTATAGCGATGTTGATGAATCACTGTTTTTAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| 3UTR-3UTR TCA 90 bp | CTCCTAAGAAATGCCTCACCCACCCTCAGGTTCCCAAAGAGCCTAAGAGTGAAGAGACGGCGTCTTCACTaGACACCTCCCCACAGGTGC | + |
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Preference number: 2 (lower is better) Translates to: LLRNASPTLRFPKSLRVKRRRLH*TPPHRC Trigger: GCACCTGTGGGGAGGTGTTCAGTGAAGACGCCGTCT...CTTCACTCTTAGGCTCTTTGGGAACCTGAGGGTGGGTGAGGCATTTCTTAGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| 3UTR-3UTR TCA 90 bp | TCACATCTAATCGATAGTTACCTGGGGAAGCCTATCAGGATGGCACAGTGCATGAGACGGCGTCTTCACTaGACACCTCCCCACAGGTGC | + |
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Preference number: 2 (lower is better) Translates to: SHLIDSYLGKPIRMAQCMRRRLH*TPPHRC Trigger: GCACCTGTGGGGAGGTGTTCAGTGAAGACGCCGTCT...CATGCACTGTGCCATCCTGATAGGCTTCCCCAGGTAACTATCGATTAGATGTGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| 3UTR-3UTR GCA 90 bp | TGTCTGGTTGAAAGATGTGGATTTCATTCCCAACTGAAATGTACCTCCATGCAGATCAGGATGGCACAGTaGATGCTGGTCCCCAAATAT | + |
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Preference number: 2 (lower is better) Translates to: CLVERCGFHSQLKCTSMQIRMAQ*MLVPKY Trigger: ATATTTGGGGACCAGCATGCACTGTGCCATCCTGAT...CTGCATGGAGGTACATTTCAGTTGGGAATGAAATCCACATCTTTCAACCAGACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| 3UTR-3UTR GCA 90 bp | TATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCCACTAATCTTGATTATGTCATGTGATTaGTATGTCGTTAGTGCCCAG | + |
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Preference number: 2 (lower is better) Translates to: YQDGTVHAGPQIFPPLILIMSCD*YVVSAQ Trigger: CTGGGCACTAACGACATAGCAATCACATGACATAAT...CAAGATTAGTGGAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| 3UTR-3UTR GCA 90 bp | GTTGAAAGATGTGGATTTCATTCCCAACTGAAATGTACCTCCATGCAGTTTCCCATTATGTCATGTGATTaGTATGTCGTTAGTGCCCAG | + |
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Preference number: 2 (lower is better) Translates to: VERCGFHSQLKCTSMQFPIMSCD*YVVSAQ Trigger: CTGGGCACTAACGACATAGCAATCACATGACATAAT...GGGAAACTGCATGGAGGTACATTTCAGTTGGGAATGAAATCCACATCTTTCAAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| 3UTR GCA 72 bp | GTTACCTGGGGAAGCCTATCAGGATGGCACAGTGCATaGTGGTCCCCAAATATTTCCTCCACTAATCTTGTC | + |
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Preference number: 3 (lower is better) Translates to: VTWGSLSGWHSA*WSPNISSTNLV Trigger: GACAAGATTAGTGGAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATAGGCTTCCCCAGGTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| 3UTR-3UTR CAA 90 bp | TGTCTGGTTGAAAGATGTGGATTTCATTCCCAACTGAAATGTACCTCCATGCAGAAGGGCTGGTCCTTTTaGTCACTGAAGTCTCAGCCT | + |
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Preference number: 3 (lower is better) Translates to: CLVERCGFHSQLKCTSMQKGWSF*SLKSQP Trigger: AGGCTGAGACTTCAGTGACAAAAAGGACCAGCCCTT...CTGCATGGAGGTACATTTCAGTTGGGAATGAAATCCACATCTTTCAACCAGACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| 3UTR TCA 72 bp | CATAAATTCTCTCTAAGGGCTGGTCCTTTTTGTCACTaGAGTCTCAGCCTTTGCATTATGTCATGTGATTGC | + |
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Preference number: 3 (lower is better) Translates to: HKFSLRAGPFCH*SLSLCIMSCDC Trigger: GCAATCACATGACATAATGCAAAGGCTGAGACTTCAGTGACAAAAAGGACCAGCCCTTAGAGAGAATTTATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR CCA 90 bp | CTGGGGAAGCCTATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCGCTCGGTCGCTCCGCTaGCGAGCTCGCCCCTCCACG | + |
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Preference number: 4 (lower is better) Translates to: LGKPIRMAQCMLVPKYFLARSLR*RARPST Trigger: CGTGGAGGGGCGAGCTCGCCAGCGGAGCGACCGAGC...GAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATAGGCTTCCCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CCA 90 bp | AAGAGTGAAGACCACACCGAGACGGCGTCTTCACTGAACACCTCCCCACAGGTGGGCTGGCTAGCTGCCTaGACTCGGACCCCCTCGGGT | + |
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Preference number: 4 (lower is better) Translates to: KSEDHTETASSLNTSPQVGWLAA*TRTPSG Trigger: ACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCC...CACCTGTGGGGAGGTGTTCAGTGAAGACGCCGTCTCGGTGTGGTCTTCACTCTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR GCA 90 bp | AGAAATGCCTCACCCACCCTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACAGGGCGCCGCCGCTCCTaGGCCTCCTCTTGCTCGGTC | + |
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Preference number: 4 (lower is better) Translates to: RNASPTLRFPKSLRVKTTGRRRS*ASSCSV Trigger: GACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCC...TGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAGGGTGGGTGAGGCATTTCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CCA 90 bp | AGAAATGCCTCACCCACCCTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACAGCTCGGTCGCTCCGCTaGCGAGCTCGCCCCTCCACG | + |
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Preference number: 4 (lower is better) Translates to: RNASPTLRFPKSLRVKTTARSLR*RARPST Trigger: CGTGGAGGGGCGAGCTCGCCAGCGGAGCGACCGAGC...TGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAGGGTGGGTGAGGCATTTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CCA 90 bp | CTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACACCGAGACGGCGTCTTCACGGCTGGCTAGCTGCCTaGACTCGGACCCCCTCGGGT | + |
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Preference number: 4 (lower is better) Translates to: LRFPKSLRVKTTPRRRLHGWLAA*TRTPSG Trigger: ACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCC...GTGAAGACGCCGTCTCGGTGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CCA 90 bp | CCCACCCTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACACCGAGACGGCGTTCCCTTTGTGGCGCGTaGCTGGCTAGCTGCCTGGAC | + |
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Preference number: 4 (lower is better) Translates to: PTLRFPKSLRVKTTPRRRSLCGA*LASCLD Trigger: GTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGA...ACGCCGTCTCGGTGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAGGGTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CCA 90 bp | GAGCCTAAGAGTGAAGACCACACCGAGACGGCGTCTTCACTGAACACCTCCCCATTTGTGGCGCGTGGCTaGCTAGCTGCCTGGACTCGG | + |
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Preference number: 4 (lower is better) Translates to: EPKSEDHTETASSLNTSPFVARG*LAAWTR Trigger: CCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAA...TGGGGAGGTGTTCAGTGAAGACGCCGTCTCGGTGTGGTCTTCACTCTTAGGCTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR GCA 90 bp | AGAAATGCCTCACCCACCCTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACATCCTGCGCCTCCTCTTaGTCGGTCGCTCCGCTGGCG | + |
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Preference number: 4 (lower is better) Translates to: RNASPTLRFPKSLRVKTTSCASS*SVAPLA Trigger: CGCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGA...TGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAGGGTGGGTGAGGCATTTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CCA 90 bp | CTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACACCGAGACGGCGTCTTCACTTTGTGGCGCGTGGCTaGCTAGCTGCCTGGACTCGG | + |
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Preference number: 4 (lower is better) Translates to: LRFPKSLRVKTTPRRRLHFVARG*LAAWTR Trigger: CCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAA...GTGAAGACGCCGTCTCGGTGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR GCA 90 bp | TGTCAGTTACTATGGCTAGCCTGTGACCATAAATTCTCTCTAAGGGCTGGTCCTGGGCGCCGCCGCTCCTaGGCCTCCTCTTGCTCGGTC | + |
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Preference number: 4 (lower is better) Translates to: CQLLWLACDHKFSLRAGPGRRRS*ASSCSV Trigger: GACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCC...AGGACCAGCCCTTAGAGAGAATTTATGGTCACAGGCTAGCCATAGTAACTGACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CCA 90 bp | GAGCCTAAGAGTGAAGACCACACCGAGACGGCGTCTTCACTGAACACCTCCCCAGGCTCTTCCTTTCGATaGCCGAGGACATTGGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: EPKSEDHTETASSLNTSPGSSFR*PRTLGR Trigger: CCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCC...TGGGGAGGTGTTCAGTGAAGACGCCGTCTCGGTGTGGTCTTCACTCTTAGGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR TCA 90 bp | CCCACCCTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACACCGAGACGGCGTGACAGGCGGCGCATTTaGAACACTCCAGGTGATACA | + |
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Preference number: 4 (lower is better) Translates to: PTLRFPKSLRVKTTPRRRDRRRI*NTPGDT Trigger: TGTATCACCTGGAGTGTTTCAAATGCGCCGCCTGTC...ACGCCGTCTCGGTGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAGGGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR GCA 90 bp | AAGAGTGAAGACCACACCGAGACGGCGTCTTCACTGAACACCTCCCCACAGGTGCCGCTTGTCACAGGATaGACAGAGACCATCCTGACC | + |
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Preference number: 4 (lower is better) Translates to: KSEDHTETASSLNTSPQVPLVTG*TETILT Trigger: GGTCAGGATGGTCTCTGTGCATCCTGTGACAAGCGG...CACCTGTGGGGAGGTGTTCAGTGAAGACGCCGTCTCGGTGTGGTCTTCACTCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR CCA 90 bp | CTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACACCGAGACGGCGTCTTCACGGCTCTTCCTTTCGATaGCCGAGGACATTGGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LRFPKSLRVKTTPRRRLHGSSFR*PRTLGR Trigger: CCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCC...GTGAAGACGCCGTCTCGGTGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR GCA 90 bp | CTGGGGAAGCCTATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCAGGGATGGGGGTATCTaGAGCACCTCATCCACGGGT | + |
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Preference number: 4 (lower is better) Translates to: LGKPIRMAQCMLVPKYFLRDGGI*STSSTG Trigger: ACCCGTGGATGAGGTGCTGCAGATACCCCCATCCCT...GAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATAGGCTTCCCCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR GCA 90 bp | TGCAGTTTCCCTTGGCTCCAGAGCTTAAGGCCACGGGAAGGTGACCAAGGAAAACGGTCCCCTATGTTCTaGTGGCAGCCACCACATGTC | + |
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Preference number: 4 (lower is better) Translates to: CSFPWLQSLRPREGDQGKRSPMF*WQPPHV Trigger: GACATGTGGTGGCTGCCAGCAGAACATAGGGGACCG...TTTTCCTTGGTCACCTTCCCGTGGCCTTAAGCTCTGGAGCCAAGGGAAACTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR CCA 90 bp | TGTCAGTTACTATGGCTAGCCTGTGACCATAAATTCTCTCTAAGGGCTGGTCCTGGCTGGCTAGCTGCCTaGACTCGGACCCCCTCGGGT | + |
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Preference number: 4 (lower is better) Translates to: CQLLWLACDHKFSLRAGPGWLAA*TRTPSG Trigger: ACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCC...AGGACCAGCCCTTAGAGAGAATTTATGGTCACAGGCTAGCCATAGTAACTGACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CCA 90 bp | AGGTCACATCTAATCGATAGTTACCTGGGGAAGCCTATCAGGATGGCACAGTGCTTTGTGGCGCGTGGCTaGCTAGCTGCCTGGACTCGG | + |
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Preference number: 4 (lower is better) Translates to: RSHLIDSYLGKPIRMAQCFVARG*LAAWTR Trigger: CCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAA...GCACTGTGCCATCCTGATAGGCTTCCCCAGGTAACTATCGATTAGATGTGACCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CCA 90 bp | GAGCCTAAGAGTGAAGACCACACCGAGACGGCGTCTTCACTGAACACCTCCCCAGCCAGTACTGGTCGATaGCTTTCAGGAAGTAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: EPKSEDHTETASSLNTSPASTGR*LSGSSG Trigger: ACCGCTACTTCCTGAAAGCCATCGACCAGTACTGGC...TGGGGAGGTGTTCAGTGAAGACGCCGTCTCGGTGTGGTCTTCACTCTTAGGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR TCA 90 bp | TGGGGAAGCCTATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCCCACAGAGGTCACAGCTaGGGCAATCCTCATGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: WGSLSGWHSACWSPNISSHRGHS*GNPHAS Trigger: ACTGGCATGAGGATTGCCTCAGCTGTGACCTCTGTG...GGAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATAGGCTTCCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR GCA 90 bp | TGGGGAAGCCTATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCCCCGCTTGTCACAGGATaGACAGAGACCATCCTGACC | + |
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Preference number: 4 (lower is better) Translates to: WGSLSGWHSACWSPNISSPLVTG*TETILT Trigger: GGTCAGGATGGTCTCTGTGCATCCTGTGACAAGCGG...GGAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATAGGCTTCCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR GCA 90 bp | TGCAGTTTCCCTTGGCTCCAGAGCTTAAGGCCACGGGAAGGTGACCAAGGAAAACCGCTTGTCACAGGATaGACAGAGACCATCCTGACC | + |
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Preference number: 4 (lower is better) Translates to: CSFPWLQSLRPREGDQGKPLVTG*TETILT Trigger: GGTCAGGATGGTCTCTGTGCATCCTGTGACAAGCGG...TTTTCCTTGGTCACCTTCCCGTGGCCTTAAGCTCTGGAGCCAAGGGAAACTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR CCA 90 bp | TGGGGAAGCCTATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCCTCCCCTATGTTCTGCTaGCAGCCACCACATGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: WGSLSGWHSACWSPNISSSPMFC*QPPHVS Trigger: GCTGACATGTGGTGGCTGCCAGCAGAACATAGGGGA...GGAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATAGGCTTCCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR CCA 90 bp | CTGGGGAAGCCTATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCTCCCCTATGTTCTGCTaGCAGCCACCACATGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: LGKPIRMAQCMLVPKYFLSPMFC*QPPHVS Trigger: GCTGACATGTGGTGGCTGCCAGCAGAACATAGGGGA...GAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATAGGCTTCCCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR TCA 90 bp | CTGGGGAAGCCTATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCGACAGGCGGCGCATTTaGAACACTCCAGGTGATACA | + |
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Preference number: 4 (lower is better) Translates to: LGKPIRMAQCMLVPKYFLDRRRI*NTPGDT Trigger: TGTATCACCTGGAGTGTTTCAAATGCGCCGCCTGTC...GAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATAGGCTTCCCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR TCA 90 bp | AAGAGTGAAGACCACACCGAGACGGCGTCTTCACTGAACACCTCCCCACAGGTGACACAGAAATGCTTCTaGCAGGCGGCGCATTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: KSEDHTETASSLNTSPQVTQKCF*QAAHLK Trigger: TTTCAAATGCGCCGCCTGTCAGAAGCATTTCTGTGT...CACCTGTGGGGAGGTGTTCAGTGAAGACGCCGTCTCGGTGTGGTCTTCACTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR TCA 90 bp | AGAAATGCCTCACCCACCCTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACAGCACAGAGACCATCCTaGCCAAAAAGCTCAGACGGG | + |
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Preference number: 4 (lower is better) Translates to: RNASPTLRFPKSLRVKTTAQRPS*PKSSDG Trigger: CCCGTCTGAGCTTTTTGGTCAGGATGGTCTCTGTGC...TGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAGGGTGGGTGAGGCATTTCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111139.3 |
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| CDS-3UTR GCA 90 bp | TTACATTTGTATAGAAACAATCTGTGGGGCGCCTCACCTCAAAATGAAGGTGTCTCCTGCGCCTCCTCTTaGTCGGTCGCTCCGCTGGCG | + |
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Preference number: 4 (lower is better) Translates to: LHLYRNNLWGASPQNEGVSCASS*SVAPLA Trigger: CGCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGA...GACACCTTCATTTTGAGGTGAGGCGCCCCACAGATTGTTTCTATACAAATGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR GCA 90 bp | AGGTCACATCTAATCGATAGTTACCTGGGGAAGCCTATCAGGATGGCACAGTGCCGGTCCCCTATGTTCTaGTGGCAGCCACCACATGTC | + |
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Preference number: 4 (lower is better) Translates to: RSHLIDSYLGKPIRMAQCRSPMF*WQPPHV Trigger: GACATGTGGTGGCTGCCAGCAGAACATAGGGGACCG...GCACTGTGCCATCCTGATAGGCTTCCCCAGGTAACTATCGATTAGATGTGACCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR CCA 90 bp | TGGGGAAGCCTATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCCGCCAGTACTGGTCGATaGCTTTCAGGAAGTAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: WGSLSGWHSACWSPNISSASTGR*LSGSSG Trigger: ACCGCTACTTCCTGAAAGCCATCGACCAGTACTGGC...GGAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATAGGCTTCCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR TCA 90 bp | AGGTCACATCTAATCGATAGTTACCTGGGGAAGCCTATCAGGATGGCACAGTGCCACAGAGGTCACAGCTaGGGCAATCCTCATGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: RSHLIDSYLGKPIRMAQCHRGHS*GNPHAS Trigger: ACTGGCATGAGGATTGCCTCAGCTGTGACCTCTGTG...GCACTGTGCCATCCTGATAGGCTTCCCCAGGTAACTATCGATTAGATGTGACCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR GCA 90 bp | TCACATCTAATCGATAGTTACCTGGGGAAGCCTATCAGGATGGCACAGTGCATGCGGTCCCCTATGTTCTaGTGGCAGCCACCACATGTC | + |
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Preference number: 4 (lower is better) Translates to: SHLIDSYLGKPIRMAQCMRSPMF*WQPPHV Trigger: GACATGTGGTGGCTGCCAGCAGAACATAGGGGACCG...CATGCACTGTGCCATCCTGATAGGCTTCCCCAGGTAACTATCGATTAGATGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR TCA 90 bp | CTGGGGAAGCCTATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCACACAGAAATGCTTCTaGCAGGCGGCGCATTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: LGKPIRMAQCMLVPKYFLTQKCF*QAAHLK Trigger: TTTCAAATGCGCCGCCTGTCAGAAGCATTTCTGTGT...GAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATAGGCTTCCCCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR CCA 90 bp | GTTGAAAGATGTGGATTTCATTCCCAACTGAAATGTACCTCCATGCAGTTTCCCTCCCTTTGTGGCGCGTaGCTGGCTAGCTGCCTGGAC | + |
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Preference number: 4 (lower is better) Translates to: VERCGFHSQLKCTSMQFPSLCGA*LASCLD Trigger: GTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGA...GGGAAACTGCATGGAGGTACATTTCAGTTGGGAATGAAATCCACATCTTTCAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR TCA 90 bp | TGTCAGTTACTATGGCTAGCCTGTGACCATAAATTCTCTCTAAGGGCTGGTCCTCACAGAGGTCACAGCTaGGGCAATCCTCATGCCAGT | + |
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Preference number: 4 (lower is better) Translates to: CQLLWLACDHKFSLRAGPHRGHS*GNPHAS Trigger: ACTGGCATGAGGATTGCCTCAGCTGTGACCTCTGTG...AGGACCAGCCCTTAGAGAGAATTTATGGTCACAGGCTAGCCATAGTAACTGACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR TCA 90 bp | AGAAATGCCTCACCCACCCTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACAACACAGAAATGCTTCTaGCAGGCGGCGCATTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: RNASPTLRFPKSLRVKTTTQKCF*QAAHLK Trigger: TTTCAAATGCGCCGCCTGTCAGAAGCATTTCTGTGT...TGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAGGGTGGGTGAGGCATTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR CCA 90 bp | TGTCAGTTACTATGGCTAGCCTGTGACCATAAATTCTCTCTAAGGGCTGGTCCTTCCCCTATGTTCTGCTaGCAGCCACCACATGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: CQLLWLACDHKFSLRAGPSPMFC*QPPHVS Trigger: GCTGACATGTGGTGGCTGCCAGCAGAACATAGGGGA...AGGACCAGCCCTTAGAGAGAATTTATGGTCACAGGCTAGCCATAGTAACTGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR TCA 90 bp | TATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCCACTAATCTTGGACAGGCGGCGCATTTaGAACACTCCAGGTGATACA | + |
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Preference number: 4 (lower is better) Translates to: YQDGTVHAGPQIFPPLILDRRRI*NTPGDT Trigger: TGTATCACCTGGAGTGTTTCAAATGCGCCGCCTGTC...CAAGATTAGTGGAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR CCA 90 bp | TTACATTTGTATAGAAACAATCTGTGGGGCGCCTCACCTCAAAATGAAGGTGTCGGCTCTTCCTTTCGATaGCCGAGGACATTGGGGAGG | + |
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Preference number: 4 (lower is better) Translates to: LHLYRNNLWGASPQNEGVGSSFR*PRTLGR Trigger: CCTCCCCAATGTCCTCGGCCATCGAAAGGAAGAGCC...GACACCTTCATTTTGAGGTGAGGCGCCCCACAGATTGTTTCTATACAAATGTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CCA 90 bp | TGTCAGTTACTATGGCTAGCCTGTGACCATAAATTCTCTCTAAGGGCTGGTCCTGCCAGTACTGGTCGATaGCTTTCAGGAAGTAGCGGT | + |
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Preference number: 4 (lower is better) Translates to: CQLLWLACDHKFSLRAGPASTGR*LSGSSG Trigger: ACCGCTACTTCCTGAAAGCCATCGACCAGTACTGGC...AGGACCAGCCCTTAGAGAGAATTTATGGTCACAGGCTAGCCATAGTAACTGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR TCA 90 bp | AGAAATGCCTCACCCACCCTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACATTGAAACACTCCAGGTaGTACACTTTGTCTTTCACC | + |
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Preference number: 4 (lower is better) Translates to: RNASPTLRFPKSLRVKTTLKHSR*YTLSFT Trigger: GGTGAAAGACAAAGTGTATCACCTGGAGTGTTTCAA...TGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAGGGTGGGTGAGGCATTTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR GCA 90 bp | TTACATTTGTATAGAAACAATCTGTGGGGCGCCTCACCTCAAAATGAAGGTGTCCCGCTTGTCACAGGATaGACAGAGACCATCCTGACC | + |
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Preference number: 4 (lower is better) Translates to: LHLYRNNLWGASPQNEGVPLVTG*TETILT Trigger: GGTCAGGATGGTCTCTGTGCATCCTGTGACAAGCGG...GACACCTTCATTTTGAGGTGAGGCGCCCCACAGATTGTTTCTATACAAATGTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR TCA 90 bp | TATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCCACTAATCTTGTTGAAACACTCCAGGTaGTACACTTTGTCTTTCACC | + |
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Preference number: 4 (lower is better) Translates to: YQDGTVHAGPQIFPPLILLKHSR*YTLSFT Trigger: GGTGAAAGACAAAGTGTATCACCTGGAGTGTTTCAA...CAAGATTAGTGGAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS CCA 90 bp | GGCGGCGTGCCGGGCGGCGGGGGCGCTCCCTTTGTGGCGCGTGGCTaGCTAGCTGCCTGGACTCGGACCCCCTCGGGTGCTCGGGCGCCG | + |
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Preference number: 5 (lower is better) Translates to: GGVPGGGGAPFVARG*LAAWTRTPSGARAP Trigger: CGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCGCCGCCCGGCACGCCGCC 80% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS GCA 90 bp | GGACCCCCTCGGGTGCTCGGGCGCCGCCGCTCCTGCGCCTCCTCTTaGTCGGTCGCTCCGCTGGCGAGCTCGCCCCTCCACGCTCAAGGA | + |
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Preference number: 5 (lower is better) Translates to: GPPRVLGRRRSCASS*SVAPLASSPLHAQG Trigger: TCCTTGAGCGTGGAGGGGCGAGCTCGCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CAA 90 bp | CCCACCCTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACACCGAGACGGCGTCTCCTGCGCCTCCTCTaGCTCGGTCGCTCCGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: PTLRFPKSLRVKTTPRRRLLRLL*LGRSAG Trigger: GCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGAG...ACGCCGTCTCGGTGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAGGGTGGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CAA 90 bp | TGCAGTTTCCCTTGGCTCCAGAGCTTAAGGCCACGGGAAGGTGACCAAGGAAAACTCCTGCGCCTCCTCTaGCTCGGTCGCTCCGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: CSFPWLQSLRPREGDQGKLLRLL*LGRSAG Trigger: GCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGAG...TTTTCCTTGGTCACCTTCCCGTGGCCTTAAGCTCTGGAGCCAAGGGAAACTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS-3UTR CAA 90 bp | AGGTCACATCTAATCGATAGTTACCTGGGGAAGCCTATCAGGATGGCACAGTGCCTCCTGCGCCTCCTCTaGCTCGGTCGCTCCGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: RSHLIDSYLGKPIRMAQCLLRLL*LGRSAG Trigger: GCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGAG...GCACTGTGCCATCCTGATAGGCTTCCCCAGGTAACTATCGATTAGATGTGACCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS GCA 90 bp | CACCCGCATCGTCATCTCATAGGCACGGATCCGCTTGTCACAGGATaGACAGAGACCATCCTGACCAAAAAGCTCAGACGGGTCCAGGCT | + |
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Preference number: 5 (lower is better) Translates to: HPHRHLIGTDPLVTG*TETILTKKLRRVQA Trigger: AGCCTGGACCCGTCTGAGCTTTTTGGTCAGGATGGTCTCTGTGCATCCTGTGACAAGCGGATCCGTGCCTATGAGATGACGATGCGGGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111139.3 |
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| CDS GCA 90 bp | CACCCGCATCGTCATCTCATAGGCACGGATCCGCTTGTCACAGGATaGACAGAGACCATCCTGACCAAAAAGCCTGAGATAGTCTCTCCT | + |
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Preference number: 5 (lower is better) Translates to: HPHRHLIGTDPLVTG*TETILTKKPEIVSP Trigger: AGGAGAGACTATCTCAGGCTTTTTGGTCAGGATGGTCTCTGTGCATCCTGTGACAAGCGGATCCGTGCCTATGAGATGACGATGCGGGTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000123437.8 ENSMUST00000156813.8 ENSMUST00000170926.8 |
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| CDS-3UTR CAA 90 bp | CTCAGGTTCCCAAAGAGCCTAAGAGTGAAGACCACACCGAGACGGCGTCTTCACCACACTATGTCGGAGTaGATGAGAAGGTATCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: LRFPKSLRVKTTPRRRLHHTMSE*MRRYLS Trigger: TGACAGATACCTTCTCATCAACTCCGACATAGTGTG...GTGAAGACGCCGTCTCGGTGTGGTCTTCACTCTTAGGCTCTTTGGGAACCTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS-3UTR CAA 90 bp | TGGGGAAGCCTATCAGGATGGCACAGTGCATGCTGGTCCCCAAATATTTCCTCCCACACTATGTCGGAGTaGATGAGAAGGTATCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: WGSLSGWHSACWSPNISSHTMSE*MRRYLS Trigger: TGACAGATACCTTCTCATCAACTCCGACATAGTGTG...GGAGGAAATATTTGGGGACCAGCATGCACTGTGCCATCCTGATAGGCTTCCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000170926.8 |
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| CDS GCA 72 bp | CTCGGACCCCCTCGGGTGCTCGGGCGCCGCCGCTCCTaGGCCTCCTCTTGCTCGGTCGCTCCGCTGGCGAGC | + |
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Preference number: 6 (lower is better) Translates to: LGPPRVLGRRRS*ASSCSVAPLAS Trigger: GCTCGCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAG 78% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS GCA 72 bp | CGGGGGCGCTCCCTTTGTGGCGCGTGGCTGGCTAGCTaGCTGGACTCGGACCCCCTCGGGTGCTCGGGCGCC | + |
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Preference number: 6 (lower is better) Translates to: RGRSLCGAWLAS*LDSDPLGCSGA Trigger: GGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCACGCGCCACAAAGGGAGCGCCCCCG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS GCA 72 bp | TGGCTGGCTAGCTGCCTGGACTCGGACCCCCTCGGGTaGTCGGGCGCCGCCGCTCCTGCGCCTCCTCTTGCT | + |
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Preference number: 6 (lower is better) Translates to: WLASCLDSDPLG*SGAAAPAPPLA Trigger: AGCAAGAGGAGGCGCAGGAGCGGCGGCGCCCGAGCACCCGAGGGGGTCCGAGTCCAGGCAGCTAGCCAGCCA 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS CCA 72 bp | GCCGCTCCTGCGCCTCCTCTTGCTCGGTCGCTCCGCTaGCGAGCTCGCCCCTCCACGCTCAAGGACAGTCAC | + |
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Preference number: 6 (lower is better) Translates to: AAPAPPLARSLR*RARPSTLKDSH Trigger: GTGACTGTCCTTGAGCGTGGAGGGGCGAGCTCGCCAGCGGAGCGACCGAGCAAGAGGAGGCGCAGGAGCGGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 |
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| CDS GCA 72 bp | CGTCATCTCATAGGCACGGATCCGCTTGTCACAGGATaGACAGAGACCATCCTGACCAAAAAGCTCAGACGG | + |
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Preference number: 6 (lower is better) Translates to: RHLIGTDPLVTG*TETILTKKLRR Trigger: CCGTCTGAGCTTTTTGGTCAGGATGGTCTCTGTGCATCCTGTGACAAGCGGATCCGTGCCTATGAGATGACG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111139.3 |
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| CDS TCA 72 bp | CACAGGATGCACAGAGACCATCCTGACCAAAAAGCCTaGGATAGTCTCTCCTGCACAATTTCCGTCCCAGCT | + |
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Preference number: 6 (lower is better) Translates to: HRMHRDHPDQKA*DSLSCTISVPA Trigger: AGCTGGGACGGAAATTGTGCAGGAGAGACTATCTCAGGCTTTTTGGTCAGGATGGTCTCTGTGCATCCTGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000123437.8 ENSMUST00000156813.8 ENSMUST00000170926.8 |
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| CDS GCA 72 bp | CGTCATCTCATAGGCACGGATCCGCTTGTCACAGGATaGACAGAGACCATCCTGACCAAAAAGCCTGAGATA | + |
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Preference number: 6 (lower is better) Translates to: RHLIGTDPLVTG*TETILTKKPEI Trigger: TATCTCAGGCTTTTTGGTCAGGATGGTCTCTGTGCATCCTGTGACAAGCGGATCCGTGCCTATGAGATGACG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000123437.8 ENSMUST00000156813.8 ENSMUST00000170926.8 |
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| CDS TCA 72 bp | CACCTACACAGAAATGCTTCTGACAGGCGGCGCATTTaGAACACTCCAGGTGATACACTTTGTCTTTCACCC | + |
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Preference number: 6 (lower is better) Translates to: HLHRNASDRRRI*NTPGDTLCLSP Trigger: GGGTGAAAGACAAAGTGTATCACCTGGAGTGTTTCAAATGCGCCGCCTGTCAGAAGCATTTCTGTGTAGGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000123437.8 ENSMUST00000156813.8 ENSMUST00000170926.8 |
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| CDS CAA 72 bp | GATGATCCCATTGATCTTGGTCCACTCGTAGATGTCTaGTTCACACACTATGTCGGAGTTGATGAGAAGGTA | + |
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Preference number: 6 (lower is better) Translates to: DDPIDLGPLVDV*FTHYVGVDEKV Trigger: TACCTTCTCATCAACTCCGACATAGTGTGTGAACAAGACATCTACGAGTGGACCAAGATCAATGGGATCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000111139.3 ENSMUST00000111140.3 ENSMUST00000111143.8 ENSMUST00000123437.8 ENSMUST00000170926.8 |
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