Pregenerated sensors for LMO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036111Ensembl transcript IDs: ENSMUST00000036992.9, ENSMUST00000207178.2, ENSMUST00000208136.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTTCTAACTTGTAGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTaGCTGGCCGGCCTGCCAGGCAGGTGGACAGGTGGGCAGACGGAC | + |
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Preference number: 1 (lower is better) Translates to: VLTCRTAAGQPAQAE*LAGLPGRWTGGQTD Trigger: GTCCGTCTGCCCACCTGTCCACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCTACAAGTTAGAAC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| 3UTR-3UTR CCA 90 bp | AGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGTGGGGCAGACGGACAGATaGACCTGGAGGCCAGATGGT | + |
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Preference number: 2 (lower is better) Translates to: SGWPARAGRVAGRPARQVGQTDR*TWRPDG Trigger: ACCATCTGGCCTCCAGGTCCATCTGTCCGTCTGCCC...CACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| 3UTR-3UTR CCA 90 bp | TCCCACAGAGATGGGCAGTGGTGGTGGAGAACAGCCACCTTCCCATCGAGGATGCGCAGGCAGAGTGGCTaGCCGGCCTGCCAGGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: SHRDGQWWWRTATFPSRMRRQSG*PACQAG Trigger: ACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCG...CATCCTCGATGGGAAGGTGGCTGTTCTCCACCACCACTGCCCATCTCTGTGGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGTGGTGGTGGAGAACAGCCACCTTCCCATCGAGGATGAAGTTCTAACTTGTGGGCAGACGGACAGATaGACCTGGAGGCCAGATGGT | + |
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Preference number: 2 (lower is better) Translates to: AVVVENSHLPIEDEVLTCGQTDR*TWRPDG Trigger: ACCATCTGGCCTCCAGGTCCATCTGTCCGTCTGCCC...ACAAGTTAGAACTTCATCCTCGATGGGAAGGTGGCTGTTCTCCACCACCACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| 3UTR CCA 72 bp | GGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTaGCCGGCCTGCCAGGCAGGTGGACAGGTGGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: GQRLASPRRQSG*PACQAGGQVGR Trigger: TCTGCCCACCTGTCCACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| 3UTR CCA 72 bp | CCCCAGGAGGGGTCCCACAGAGATGGGCAGTGGTGGTaGAGAACAGCCACCTTCCCATCGAGGATGAAGTTC | + |
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Preference number: 3 (lower is better) Translates to: PQEGSHRDGQWW*RTATFPSRMKF Trigger: GAACTTCATCCTCGATGGGAAGGTGGCTGTTCTCCACCACCACTGCCCATCTCTGTGGGACCCCTCCTGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR TCA 90 bp | AGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCGCAGGTACCGGTCCTTaGTCTTGCGGTTGCAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: RTAAGQPAQAEWLAGLPGAGTGP*SCGCSL Trigger: CAGGCTGCAACCGCAAGATCAAGGACCGGTACCTGC...GCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR TCA 90 bp | GCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGTGGCCCACGCAAAATCTCTaGTTGCAGAGCTGGCAGGCG | + |
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Preference number: 4 (lower is better) Translates to: AAGQPAQAEWLAGLPGRWPTQNL*LQSWQA Trigger: CGCCTGCCAGCTCTGCAATCAGAGATTTTGCGTGGG...CCACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR GCA 90 bp | AGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCCTTGCGGTTGCAGCCTaGGCAGCCCTTCTGTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: RTAAGQPAQAEWLAGLPGLAVAA*AALLFP Trigger: GGGAAACAGAAGGGCTGCGCAGGCTGCAACCGCAAG...GCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR GCA 90 bp | GCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGTGGACACTTGCGGTTGCAGCCTaGGCAGCCCTTCTGTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: AGQPAQAEWLAGLPGRWTLAVAA*AALLFP Trigger: GGGAAACAGAAGGGCTGCGCAGGCTGCAACCGCAAG...TGTCCACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR GCA 90 bp | GCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGTGGCTGGGATCAGCTTGCTaGAGGCAGCACAGTTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: AAGQPAQAEWLAGLPGRWLGSAC*RQHSFL Trigger: CAGGAAACTGTGCTGCCTGCAGCAAGCTGATCCCAG...CCACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR TCA 90 bp | GGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGCGAAGCAGTCAAGGTaGTACACATTGTCTCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: GQRLASPRRQSGWPACQAAKQSR*YTLSRA Trigger: GGCCCGAGACAATGTGTATCACCTTGACTGCTTCGC...TGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR TCA 90 bp | GCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGTGGACACCCACGCAAAATCTCTaGTTGCAGAGCTGGCAGGCG | + |
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Preference number: 4 (lower is better) Translates to: AGQPAQAEWLAGLPGRWTPTQNL*LQSWQA Trigger: CGCCTGCCAGCTCTGCAATCAGAGATTTTGCGTGGG...TGTCCACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR GCA 90 bp | GCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGTGGCGCAAAATCTCTGATTaGAGAGCTGGCAGGCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: AAGQPAQAEWLAGLPGRWRKISD*RAGRRS Trigger: GCTTCGCCTGCCAGCTCTGCAATCAGAGATTTTGCG...CCACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR TCA 90 bp | ACTTGTAGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGGCAGGTACCGGTCCTTaGTCTTGCGGTTGCAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: TCRTAAGQPAQAEWLAGLAGTGP*SCGCSL Trigger: CAGGCTGCAACCGCAAGATCAAGGACCGGTACCTGC...CAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCTACAAGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR GCA 90 bp | GCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGTGGACACCAGTACTTGTCCAGTaGCTTCAGCAGGTACCGGTC | + |
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Preference number: 4 (lower is better) Translates to: AGQPAQAEWLAGLPGRWTPVLVQ*LQQVPV Trigger: GACCGGTACCTGCTGAAGGCACTGGACAAGTACTGG...TGTCCACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR GCA 90 bp | GCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGTGGACACTGGGATCAGCTTGCTaGAGGCAGCACAGTTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: AGQPAQAEWLAGLPGRWTLGSAC*RQHSFL Trigger: CAGGAAACTGTGCTGCCTGCAGCAAGCTGATCCCAG...TGTCCACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR GCA 90 bp | GGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAAAGCTGGGATCAGCTTaGTGCAGGCAGCACAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: GQRLASPRRQSGWPACQAKLGSA*CRQHSF Trigger: GAAACTGTGCTGCCTGCAGCAAGCTGATCCCAGCTT...TGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR CCA 90 bp | AGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCTGTTTCCCCTTAGGTTaGACGGAGAGCATCGGCACA | + |
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Preference number: 4 (lower is better) Translates to: RTAAGQPAQAEWLAGLPGCFPLG*TESIGT Trigger: TGTGCCGATGCTCTCCGTCCAACCTAAGGGGAAACA...GCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR CCA 90 bp | GGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCATGTTTCCCCTTAGGTTaGACGGAGAGCATCGGCACA | + |
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Preference number: 4 (lower is better) Translates to: GQRLASPRRQSGWPACQACFPLG*TESIGT Trigger: TGTGCCGATGCTCTCCGTCCAACCTAAGGGGAAACA...TGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR TCA 90 bp | CTAACTTGTAGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCACGCCGGCACAGGATaGGGTTGGCCTTGGTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: LTCRTAAGQPAQAEWLAGHAGTG*GWPWCR Trigger: TCTACACCAAGGCCAACCTCATCCTGTGCCGGCGTG...GCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCTACAAGTTAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR GCA 90 bp | GCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGTGGACAAAGCTGGGATCAGCTTaGTGCAGGCAGCACAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: AGQPAQAEWLAGLPGRWTKLGSA*CRQHSF Trigger: GAAACTGTGCTGCCTGCAGCAAGCTGATCCCAGCTT...TGTCCACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR GCA 90 bp | CTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGTGGACAGCGCAAAATCTCTGATTaGAGAGCTGGCAGGCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: LASPRRQSGWPACQAGGQRKISD*RAGRRS Trigger: GCTTCGCCTGCCAGCTCTGCAATCAGAGATTTTGCG...CTGTCCACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR CCA 90 bp | AGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGTGCAGCACAGTTTCCTGTaGTGCCAAAAAGCCTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: SGWPARAGRVAGRPARQVQHSFL*CQKASG Trigger: ACCTGAGGCTTTTTGGCACCACAGGAAACTGTGCTG...CACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR TCA 90 bp | ACTTGTAGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGGCGAAGCAGTCAAGGTaGTACACATTGTCTCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: TCRTAAGQPAQAEWLAGLAKQSR*YTLSRA Trigger: GGCCCGAGACAATGTGTATCACCTTGACTGCTTCGC...CAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCTACAAGT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR TCA 90 bp | ACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGATTCAAAGGTGCCATTaGGATGCCCCTCCTCATAGT | + |
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Preference number: 4 (lower is better) Translates to: TAAGQPAQAEWLAGLPGRIQRCH*DAPPHS Trigger: ACTATGAGGAGGGGCATCTCAATGGCACCTTTGAAT...CCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR TCA 90 bp | GGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAATTCAAAGGTGCCATTaGGATGCCCCTCCTCATAGT | + |
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Preference number: 4 (lower is better) Translates to: GQRLASPRRQSGWPACQAIQRCH*DAPPHS Trigger: ACTATGAGGAGGGGCATCTCAATGGCACCTTTGAAT...TGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR GCA 90 bp | CTTGTAGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCGCAAAATCTCTGATTaGAGAGCTGGCAGGCGAAGC | + |
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Preference number: 4 (lower is better) Translates to: LVGQRLASPRRQSGWPACRKISD*RAGRRS Trigger: GCTTCGCCTGCCAGCTCTGCAATCAGAGATTTTGCG...GCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCTACAAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR CCA 90 bp | CTTGTAGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGCACAGTTTCCTGTaGTGCCAAAAAGCCTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LVGQRLASPRRQSGWPACQHSFL*CQKASG Trigger: ACCTGAGGCTTTTTGGCACCACAGGAAACTGTGCTG...GCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCTACAAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR GCA 90 bp | CTAACTTGTAGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCAAGCTGGGATCAGCTTaGTGCAGGCAGCACAGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LTCRTAAGQPAQAEWLAGKLGSA*CRQHSF Trigger: GAAACTGTGCTGCCTGCAGCAAGCTGATCCCAGCTT...GCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCTACAAGTTAG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR CCA 90 bp | CTAACTTGTAGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCAGCACAGTTTCCTGTaGTGCCAAAAAGCCTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LTCRTAAGQPAQAEWLAGQHSFL*CQKASG Trigger: ACCTGAGGCTTTTTGGCACCACAGGAAACTGTGCTG...GCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCTACAAGTTAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR TCA 90 bp | AGGAGGGGTCCCACAGAGATGGGCAGTGGTGGTGGAGAACAGCCACCTTCCCATCCCACGCAAAATCTCTaGTTGCAGAGCTGGCAGGCG | + |
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Preference number: 4 (lower is better) Translates to: RRGPTEMGSGGGEQPPSHPTQNL*LQSWQA Trigger: CGCCTGCCAGCTCTGCAATCAGAGATTTTGCGTGGG...ATGGGAAGGTGGCTGTTCTCCACCACCACTGCCCATCTCTGTGGGACCCCTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR GCA 90 bp | GGAGGGGTCCCACAGAGATGGGCAGTGGTGGTGGAGAACAGCCACCTTCCCATCCCAGTACTTGTCCAGTaGCTTCAGCAGGTACCGGTC | + |
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Preference number: 4 (lower is better) Translates to: GGVPQRWAVVVENSHLPIPVLVQ*LQQVPV Trigger: GACCGGTACCTGCTGAAGGCACTGGACAAGTACTGG...GATGGGAAGGTGGCTGTTCTCCACCACCACTGCCCATCTCTGTGGGACCCCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR TCA 90 bp | GGTCCCACAGAGATGGGCAGTGGTGGTGGAGAACAGCCACCTTCCCATCGAGGAGCGAAGCAGTCAAGGTaGTACACATTGTCTCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: GPTEMGSGGGEQPPSHRGAKQSR*YTLSRA Trigger: GGCCCGAGACAATGTGTATCACCTTGACTGCTTCGC...TCCTCGATGGGAAGGTGGCTGTTCTCCACCACCACTGCCCATCTCTGTGGGACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR GCA 90 bp | GAGGATGAAGTTCTAACTTGTAGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGCCAGTACTTGTCCAGTaGCTTCAGCAGGTACCGGTC | + |
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Preference number: 4 (lower is better) Translates to: EDEVLTCRTAAGQPAQAEPVLVQ*LQQVPV Trigger: GACCGGTACCTGCTGAAGGCACTGGACAAGTACTGG...CTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCTACAAGTTAGAACTTCATCCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR TCA 90 bp | GCAGTGGTGGTGGAGAACAGCCACCTTCCCATCGAGGATGAAGTTCTAACTTGTGCAGGTACCGGTCCTTaGTCTTGCGGTTGCAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: AVVVENSHLPIEDEVLTCAGTGP*SCGCSL Trigger: CAGGCTGCAACCGCAAGATCAAGGACCGGTACCTGC...ACAAGTTAGAACTTCATCCTCGATGGGAAGGTGGCTGTTCTCCACCACCACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR TCA 90 bp | GCAGTGGTGGTGGAGAACAGCCACCTTCCCATCGAGGATGAAGTTCTAACTTGTCACGCCGGCACAGGATaGGGTTGGCCTTGGTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: AVVVENSHLPIEDEVLTCHAGTG*GWPWCR Trigger: TCTACACCAAGGCCAACCTCATCCTGTGCCGGCGTG...ACAAGTTAGAACTTCATCCTCGATGGGAAGGTGGCTGTTCTCCACCACCACTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR GCA 90 bp | TGGGCAGTGGTGGTGGAGAACAGCCACCTTCCCATCGAGGATGAAGTTCTAACTCTGGGATCAGCTTGCTaGAGGCAGCACAGTTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: WAVVVENSHLPIEDEVLTLGSAC*RQHSFL Trigger: CAGGAAACTGTGCTGCCTGCAGCAAGCTGATCCCAG...AGTTAGAACTTCATCCTCGATGGGAAGGTGGCTGTTCTCCACCACCACTGCCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR CAA 90 bp | GCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGTGGACACTGTTTCCCCTTAGGTaGGACGGAGAGCATCGGCAC | + |
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Preference number: 5 (lower is better) Translates to: AGQPAQAEWLAGLPGRWTLFPLR*DGEHRH Trigger: GTGCCGATGCTCTCCGTCCAACCTAAGGGGAAACAG...TGTCCACCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR CAA 90 bp | ACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAGGAAAGCTGGGATCAGCTaGCTGCAGGCAGCACAGTTT | + |
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Preference number: 5 (lower is better) Translates to: TAAGQPAQAEWLAGLPGRKAGIS*LQAAQF Trigger: AAACTGTGCTGCCTGCAGCAAGCTGATCCCAGCTTT...CCTGCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR CAA 90 bp | AGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGCCAGGCAAAGCTGGGATCAGCTaGCTGCAGGCAGCACAGTTT | + |
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Preference number: 5 (lower is better) Translates to: RTAAGQPAQAEWLAGLPGKAGIS*LQAAQF Trigger: AAACTGTGCTGCCTGCAGCAAGCTGATCCCAGCTTT...GCCTGGCAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR CAA 90 bp | ACTTGTAGGACAGCGGCTGGCCAGCCCGCGCAGGCAGAGTGGCTGGCCGGCCTGTGGCACAAGATCATGTaGTTCTTCAGGAAGAATTTG | + |
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Preference number: 5 (lower is better) Translates to: TCRTAAGQPAQAEWLAGLWHKIM*FFRKNL Trigger: CAAATTCTTCCTGAAGAACAACATGATCTTGTGCCA...CAGGCCGGCCAGCCACTCTGCCTGCGCGGGCTGGCCAGCCGCTGTCCTACAAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS-3UTR CAA 90 bp | GCAGTGGTGGTGGAGAACAGCCACCTTCCCATCGAGGATGAAGTTCTAACTTGTCTGTTTCCCCTTAGGTaGGACGGAGAGCATCGGCAC | + |
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Preference number: 5 (lower is better) Translates to: AVVVENSHLPIEDEVLTCLFPLR*DGEHRH Trigger: GTGCCGATGCTCTCCGTCCAACCTAAGGGGAAACAG...ACAAGTTAGAACTTCATCCTCGATGGGAAGGTGGCTGTTCTCCACCACCACTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR CAA 90 bp | GGAGGGGTCCCACAGAGATGGGCAGTGGTGGTGGAGAACAGCCACCTTCCCATCTTCTTCAGGAAGAATTaGTCTCCCACGCAAAATCTC | + |
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Preference number: 5 (lower is better) Translates to: GGVPQRWAVVVENSHLPIFFRKN*SPTQNL Trigger: GAGATTTTGCGTGGGAGACAAATTCTTCCTGAAGAA...GATGGGAAGGTGGCTGTTCTCCACCACCACTGCCCATCTCTGTGGGACCCCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR CAA 90 bp | AGGAGGGGTCCCACAGAGATGGGCAGTGGTGGTGGAGAACAGCCACCTTCCCATTGGCACAAGATCATGTaGTTCTTCAGGAAGAATTTG | + |
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Preference number: 5 (lower is better) Translates to: RRGPTEMGSGGGEQPPSHWHKIM*FFRKNL Trigger: CAAATTCTTCCTGAAGAACAACATGATCTTGTGCCA...ATGGGAAGGTGGCTGTTCTCCACCACCACTGCCCATCTCTGTGGGACCCCTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS-3UTR CAA 90 bp | GGTCCCACAGAGATGGGCAGTGGTGGTGGAGAACAGCCACCTTCCCATCGAGGATGGCACAAGATCATGTaGTTCTTCAGGAAGAATTTG | + |
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Preference number: 5 (lower is better) Translates to: GPTEMGSGGGEQPPSHRGWHKIM*FFRKNL Trigger: CAAATTCTTCCTGAAGAACAACATGATCTTGTGCCA...TCCTCGATGGGAAGGTGGCTGTTCTCCACCACCACTGCCCATCTCTGTGGGACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 |
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| CDS CCA 72 bp | TTGCAGCCTGCGCAGCCCTTCTGTTTCCCCTTAGGTTaGACGGAGAGCATCGGCACACCGTCCTCCTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: LQPAQPFCFPLG*TESIGTPSSLS Trigger: GGACAAGGAGGACGGTGTGCCGATGCTCTCCGTCCAACCTAAGGGGAAACAGAAGGGCTGCGCAGGCTGCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036992.9 |
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| CDS CCA 72 bp | TTGCAGCCTGCGCAGCCCTTCTGTTTCCCCTTAGGTTaGACGGAGAGCATCGGCACACCGTCCTCTTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: LQPAQPFCFPLG*TESIGTPSSWS Trigger: GGACCAAGAGGACGGTGTGCCGATGCTCTCCGTCCAACCTAAGGGGAAACAGAAGGGCTGCGCAGGCTGCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207178.2 |
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| CDS CAA 72 bp | GTTGCAGCCTGCGCAGCCCTTCTGTTTCCCCTTAGGTaGGACGGAGAGCATCGGCACACCGTCCTCCTTGTC | + |
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Preference number: 6 (lower is better) Translates to: VAACAALLFPLR*DGEHRHTVLLV Trigger: GACAAGGAGGACGGTGTGCCGATGCTCTCCGTCCAACCTAAGGGGAAACAGAAGGGCTGCGCAGGCTGCAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036992.9 |
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| CDS CAA 72 bp | GTTGCAGCCTGCGCAGCCCTTCTGTTTCCCCTTAGGTaGGACGGAGAGCATCGGCACACCGTCCTCTTGGTC | + |
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Preference number: 6 (lower is better) Translates to: VAACAALLFPLR*DGEHRHTVLLV Trigger: GACCAAGAGGACGGTGTGCCGATGCTCTCCGTCCAACCTAAGGGGAAACAGAAGGGCTGCGCAGGCTGCAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207178.2 |
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| CDS CAA 90 bp | GATCTTGCGGTTGCAGCCTGCGCAGCCCTTCTGTTTCCCCTTAGGTaGGACGGAGAGCATCGGCACACCGTCCTCCTTGTCCAGCACCAT | + |
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Preference number: 6 (lower is better) Translates to: DLAVAACAALLFPLR*DGEHRHTVLLVQHH Trigger: ATGGTGCTGGACAAGGAGGACGGTGTGCCGATGCTCTCCGTCCAACCTAAGGGGAAACAGAAGGGCTGCGCAGGCTGCAACCGCAAGATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036992.9 |
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| CDS CAA 90 bp | GATCTTGCGGTTGCAGCCTGCGCAGCCCTTCTGTTTCCCCTTAGGTaGGACGGAGAGCATCGGCACACCGTCCTCTTGGTCCAAAACCAT | + |
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Preference number: 6 (lower is better) Translates to: DLAVAACAALLFPLR*DGEHRHTVLLVQNH Trigger: ATGGTTTTGGACCAAGAGGACGGTGTGCCGATGCTCTCCGTCCAACCTAAGGGGAAACAGAAGGGCTGCGCAGGCTGCAACCGCAAGATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000207178.2 |
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| CDS GCA 72 bp | GGATCAGCTTGCTGCAGGCAGCACAGTTTCCTGTGGTaGCAAAAAGCCTCAGGTAGTCACGCCGGCACAGGA | + |
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Preference number: 6 (lower is better) Translates to: GSACCRQHSFLW*QKASGSHAGTG Trigger: TCCTGTGCCGGCGTGACTACCTGAGGCTTTTTGGCACCACAGGAAACTGTGCTGCCTGCAGCAAGCTGATCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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| CDS CCA 72 bp | CTGGGATCAGCTTGCTGCAGGCAGCACAGTTTCCTGTaGTGCCAAAAAGCCTCAGGTAGTCACGCCGGCACA | + |
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Preference number: 6 (lower is better) Translates to: LGSACCRQHSFL*CQKASGSHAGT Trigger: TGTGCCGGCGTGACTACCTGAGGCTTTTTGGCACCACAGGAAACTGTGCTGCCTGCAGCAAGCTGATCCCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000036992.9 ENSMUST00000207178.2 ENSMUST00000208136.2 |
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