RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LMNTD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000054966

Ensembl transcript IDs: ENSMUST00000111706.8, ENSMUST00000111708.9, ENSMUST00000148739.8, ENSMUST00000149666.2

Found 310 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCTTCAGGAATGCCTGTGTGGTTCTTCAGCTTGTGCGTGGAATGCTaGGGACCCGGGGGCTGGGGCAGCAGGACTGGCAGCTCCGCCCTC +
Preference number: 1 (lower is better)
Translates to: SSGMPVWFFSLCVEC*GPGGWGSRTGSSAL
Trigger: GAGGGCGGAGCTGCCAGTCCTGCTGCCCCAGCCCCCGGGTCCTCAGCATTCCACGCACAAGCTGAAGAACCACACAGGCATTCCTGAAGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 90 bp CCGGTCCCAGCTGCGCCCACTGCTCAGGACGTAACGGAAGTCTTCTaGATAGAAGGTTGTGTTCTTGGCAGAGCCTCTGGATTGCGACAC +
Preference number: 1 (lower is better)
Translates to: PVPAAPTAQDVTEVF*IEGCVLGRASGLRH
Trigger: GTGTCGCAATCCAGAGGCTCTGCCAAGAACACAACCTTCTATCCAGAAGACTTCCGTTACGTCCTGAGCAGTGGGCGCAGCTGGGACCGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR TCA 90 bp CAGATCTCTCTCCCTGACAGTGCCCCAATGCTCTGGGTCCCTAGCTaGGGGACTCTGTTCTCAGTCCAGTTTGGTGACCACAGTGCTCAC +
Preference number: 1 (lower is better)
Translates to: QISLPDSAPMLWVPS*GTLFSVQFGDHSAH
Trigger: GTGAGCACTGTGGTCACCAAACTGGACTGAGAACAGAGTCCCTCAGCTAGGGACCCAGAGCATTGGGGCACTGTCAGGGAGAGAGATCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 90 bp AGAGGAGACACACTCTGGAGACCAGGTGGGCAGCCCACTGCATCTTaGTTCTGGCTAACAAGCGGTTCTCCTGTGGTAGCTACTGGATAC +
Preference number: 1 (lower is better)
Translates to: RGDTLWRPGGQPTAS*FWLTSGSPVVATGY
Trigger: GTATCCAGTAGCTACCACAGGAGAACCGCTTGTTAGCCAGAAGCAAGATGCAGTGGGCTGCCCACCTGGTCTCCAGAGTGTGTCTCCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 90 bp GACACACTCTGGAGACCAGGTGGGCAGCCCACTGCATCTTGCTTCTaGCTAACAAGCGGTTCTCCTGTGGTAGCTACTGGATACTCTTGG +
Preference number: 1 (lower is better)
Translates to: DTLWRPGGQPTASCF*LTSGSPVVATGYSW
Trigger: CCAAGAGTATCCAGTAGCTACCACAGGAGAACCGCTTGTTAGCCAGAAGCAAGATGCAGTGGGCTGCCCACCTGGTCTCCAGAGTGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 90 bp GAGAGACGTGCGCCTCTGCAAGTCTCTTCAGAGTGCCTGCATCACTaGCAGATTGCTGAAGAACTCCCACATGGACTGCACACACTGTCA +
Preference number: 1 (lower is better)
Translates to: ERRAPLQVSSECLHH*QIAEELPHGLHTLS
Trigger: TGACAGTGTGTGCAGTCCATGTGGGAGTTCTTCAGCAATCTGGCAGTGATGCAGGCACTCTGAAGAGACTTGCAGAGGCGCACGTCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR GCA 90 bp CATCCCCAGAATGCTTTCAGATCTCTCTCCCTGACAGTGCCCCAATaGTCTGGGTCCCTAGCTGAGGGACTCTGTTCTCAGTCCAGTTTG +
Preference number: 1 (lower is better)
Translates to: HPQNAFRSLSLTVPQ*SGSLAEGLCSQSSL
Trigger: CAAACTGGACTGAGAACAGAGTCCCTCAGCTAGGGACCCAGAGCATTGGGGCACTGTCAGGGAGAGAGATCTGAAAGCATTCTGGGGATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 90 bp GCCTTCACTCTCTCTGAGGCACACATGGAAAATGCTCTTCAGGAATaGCTGTGTGGTTCTTCAGCTTGTGCGTGGAATGCTGAGGACCCG +
Preference number: 1 (lower is better)
Translates to: AFTLSEAHMENALQE*LCGSSACAWNAEDP
Trigger: CGGGTCCTCAGCATTCCACGCACAAGCTGAAGAACCACACAGGCATTCCTGAAGAGCATTTTCCATGTGTGCCTCAGAGAGAGTGAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 90 bp TGCCAGATTGCTGAAGAACTCCCACATGGACTGCACACACTGTCATaGAGGAATTCCATTAGCCAAGACCCCGGGGCAGAAGTTGGGTTT +
Preference number: 1 (lower is better)
Translates to: CQIAEELPHGLHTLS*RNSISQDPGAEVGF
Trigger: AAACCCAACTTCTGCCCCGGGGTCTTGGCTAATGGAATTCCTGCATGACAGTGTGTGCAGTCCATGTGGGAGTTCTTCAGCAATCTGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR TCA 90 bp AGCTGCTTGTCTTTGACTTGTGTTGAAATGCTGAAGAAATGGGTCTaGTGTCAGCAGAGGAGACACACTCTGGAGACCAGGTGGGCAGCC +
Preference number: 1 (lower is better)
Translates to: SCLSLTCVEMLKKWV*CQQRRHTLETRWAA
Trigger: GGCTGCCCACCTGGTCTCCAGAGTGTGTCTCCTCTGCTGACATCAGACCCATTTCTTCAGCATTTCAACACAAGTCAAAGACAAGCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR TCA 90 bp AGAGCCTCTGGATTGCGACACATGACTCCTGCTCATTGGCTACTATaGGATCTGCTTCCTTCAGAACAATCTCCCATGGCAAGCTTAGTC +
Preference number: 1 (lower is better)
Translates to: RASGLRHMTPAHWLL*DLLPSEQSPMASLV
Trigger: GACTAAGCTTGCCATGGGAGATTGTTCTGAAGGAAGCAGATCTCATAGTAGCCAATGAGCAGGAGTCATGTGTCGCAATCCAGAGGCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 90 bp AGGTTGTGTTCTTGGCAGAGCCTCTGGATTGCGACACATGACTCCTaGTCATTGGCTACTATGAGATCTGCTTCCTTCAGAACAATCTCC +
Preference number: 1 (lower is better)
Translates to: RLCSWQSLWIATHDS*SLATMRSASFRTIS
Trigger: GGAGATTGTTCTGAAGGAAGCAGATCTCATAGTAGCCAATGAGCAGGAGTCATGTGTCGCAATCCAGAGGCTCTGCCAAGAACACAACCT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 90 bp AACGGAAGTCTTCTGGATAGAAGGTTGTGTTCTTGGCAGAGCCTCTaGATTGCGACACATGACTCCTGCTCATTGGCTACTATGAGATCT +
Preference number: 1 (lower is better)
Translates to: NGSLLDRRLCSWQSL*IATHDSCSLATMRS
Trigger: AGATCTCATAGTAGCCAATGAGCAGGAGTCATGTGTCGCAATCCAGAGGCTCTGCCAAGAACACAACCTTCTATCCAGAAGACTTCCGTT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 90 bp TTTATTCTGCAGAAGACCAGCATGCGGGGGTCCTGTATTCCAAGATaGAGAGACAACCAAATGAGCTCACAGGTTGGACTGAAAGCACAT +
Preference number: 1 (lower is better)
Translates to: FILQKTSMRGSCIPR*RDNQMSSQVGLKAH
Trigger: ATGTGCTTTCAGTCCAACCTGTGAGCTCATTTGGTTGTCTCTCCATCTTGGAATACAGGACCCCCGCATGCTGGTCTTCTGCAGAATAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 90 bp ATATTATTATGCTCACATTGTCTTAAGGATCTCCCATCCCCAGAATaGTTTCAGATCTCTCTCCCTGACAGTGCCCCAATGCTCTGGGTC +
Preference number: 1 (lower is better)
Translates to: ILLCSHCLKDLPSPE*FQISLPDSAPMLWV
Trigger: GACCCAGAGCATTGGGGCACTGTCAGGGAGAGAGATCTGAAAGCATTCTGGGGATGGGAGATCCTTAAGACAATGTGAGCATAATAATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 90 bp CCATTGACTAGCATGAGCTTCCTGGAAAATTCTCATTTATCTGGCTaGGGTCTGTTGTTTCAACACCCTGATAGTCGGACTGAGAGACGT +
Preference number: 1 (lower is better)
Translates to: PLTSMSFLENSHLSG*GLLFQHPDSRTERR
Trigger: ACGTCTCTCAGTCCGACTATCAGGGTGTTGAAACAACAGACCCCAGCCAGATAAATGAGAATTTTCCAGGAAGCTCATGCTAGTCAATGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR TCA 90 bp TCTTACTCCATCTCTAAGGGCATTCCATTAAAAGGGCATGGGAGCTaGAACCTGTTACCAGGAAGGTCTGGAAACTTGTTGGCCTTATTG +
Preference number: 1 (lower is better)
Translates to: SYSISKGIPLKGHGS*NLLPGRSGNLLALL
Trigger: CAATAAGGCCAACAAGTTTCCAGACCTTCCTGGTAACAGGTTTCAGCTCCCATGCCCTTTTAATGGAATGCCCTTAGAGATGGAGTAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 90 bp TTCTGGCTAACAAGCGGTTCTCCTGTGGTAGCTACTGGATACTCTTaGCTCAACTTTTTCATCCTTCATCAAGGAGACGTCTCTTTGCAA +
Preference number: 1 (lower is better)
Translates to: FWLTSGSPVVATGYS*LNFFILHQGDVSLQ
Trigger: TTGCAAAGAGACGTCTCCTTGATGAAGGATGAAAAAGTTGAGCCAAGAGTATCCAGTAGCTACCACAGGAGAACCGCTTGTTAGCCAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 90 bp TTGCAGAAAACCACACTTATCAAATACAGGAAACAAGAGATCTTGTaGAGCCCAGTCGAAACAGGTATACCAGCAATAAAACTCGTGCAT +
Preference number: 1 (lower is better)
Translates to: LQKTTLIKYRKQEIL*SPVETGIPAIKLVH
Trigger: ATGCACGAGTTTTATTGCTGGTATACCTGTTTCGACTGGGCTCCACAAGATCTCTTGTTTCCTGTATTTGATAAGTGTGGTTTTCTGCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 90 bp TCAACTTTTTCATCCTTCATCAAGGAGACGTCTCTTTGCAACCGATaGAGACCTTTGCAGAAAACCACACTTATCAAATACAGGAAACAA +
Preference number: 1 (lower is better)
Translates to: STFSSFIKETSLCNR*RPLQKTTLIKYRKQ
Trigger: TTGTTTCCTGTATTTGATAAGTGTGGTTTTCTGCAAAGGTCTCCATCGGTTGCAAAGAGACGTCTCCTTGATGAAGGATGAAAAAGTTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR GCA 90 bp CTTCCTGTAGGAGCTGGAGAGTTGGCTCCCTGGGTTAGGTGCATACTGCTCTTGAGGGGACCGGAGCTCTaGTCCAAGCCCGGTTCCCAG +
Preference number: 2 (lower is better)
Translates to: LPVGAGELAPWVRCILLLRGPEL*SKPGSQ
Trigger: CTGGGAACCGGGCTTGGAGCAGAGCTCCGGTCCCCT...CAAGAGCAGTATGCACCTAACCCAGGGAGCCAACTCTCCAGCTCCTACAGGAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR-3UTR TCA 90 bp CAGCATGCGGGGGTCCTGTATTCCAAGATGGAGAGACAACCAAATGAGCTCACATTGTGCGTGGAATGCTaGGGACCCGGGGGCTGGGGC +
Preference number: 2 (lower is better)
Translates to: QHAGVLYSKMERQPNELTLCVEC*GPGGWG
Trigger: GCCCCAGCCCCCGGGTCCTCAGCATTCCACGCACAA...TGTGAGCTCATTTGGTTGTCTCTCCATCTTGGAATACAGGACCCCCGCATGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CCA 90 bp GCCCCCTTCACCGCCTTCCTTCCTCTGCAAATTGTCCCTTCTACTCCCGTGTCTCGTGCATATCAGGGTTaGGGGTACTGCCTTCACTCT +
Preference number: 2 (lower is better)
Translates to: APFTAFLPLQIVPSTPVSRAYQG*GYCLHS
Trigger: AGAGTGAAGGCAGTACCCCCAACCCTGATATGCACG...AGACACGGGAGTAGAAGGGACAATTTGCAGAGGAAGGAAGGCGGTGAAGGGGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CCA 90 bp TCACCGCCTTCCTTCCTCTGCAAATTGTCCCTTCTACTCCCGTGTCTTATGGCTAGAGGAGACACACTCTaGAGACCAGGTGGGCAGCCC +
Preference number: 2 (lower is better)
Translates to: SPPSFLCKLSLLLPCLMARGDTL*RPGGQP
Trigger: GGGCTGCCCACCTGGTCTCCAGAGTGTGTCTCCTCT...AGCCATAAGACACGGGAGTAGAAGGGACAATTTGCAGAGGAAGGAAGGCGGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 90 bp GTGCGCCTCTGCAAGTCTCTTCAGAGTGCCTGCATCACTGCCAGATaGCTGAAGAACTCCCACATGGACTGCACACACTGTCATGCAGGA +
Preference number: 2 (lower is better)
Translates to: VRLCKSLQSACITAR*LKNSHMDCTHCHAG
Trigger: TCCTGCATGACAGTGTGTGCAGTCCATGTGGGAGTTCTTCAGCAATCTGGCAGTGATGCAGGCACTCTGAAGAGACTTGCAGAGGCGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 90 bp TGCGCCCACTGCTCAGGACGTAACGGAAGTCTTCTGGATAGAAGGTaGTGTTCTTGGCAGAGCCTCTGGATTGCGACACATGACTCCTGC +
Preference number: 2 (lower is better)
Translates to: CAHCSGRNGSLLDRR*CSWQSLWIATHDSC
Trigger: GCAGGAGTCATGTGTCGCAATCCAGAGGCTCTGCCAAGAACACAACCTTCTATCCAGAAGACTTCCGTTACGTCCTGAGCAGTGGGCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR TCA 90 bp GAGCTAGTCCTTTGGGATATGAATGCTTCCTGTAGGAGCTGGAGAGTTGGCTCCGGCCTGTCTTCTTCTTaGGGACACGCCGAGAGGTCA +
Preference number: 2 (lower is better)
Translates to: ELVLWDMNASCRSWRVGSGLSSS*GHAERS
Trigger: TGACCTCTCGGCGTGTCCTCAAGAAGAAGACAGGCC...GGAGCCAACTCTCCAGCTCCTACAGGAAGCATTCATATCCCAAAGGACTAGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR-3UTR CCA 90 bp GGTCTGTTGTTTCAACACCCTGATAGTCGGACTGAGAGACGTGCGCCTCTGCAAGGAGAGTTGGCTCCCTaGGTTAGGTGCATACTGCTC +
Preference number: 2 (lower is better)
Translates to: GLLFQHPDSRTERRAPLQGELAP*VRCILL
Trigger: GAGCAGTATGCACCTAACCCAGGGAGCCAACTCTCC...TTGCAGAGGCGCACGTCTCTCAGTCCGACTATCAGGGTGTTGAAACAACAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 90 bp TCCATCCATCTTTGCGATCTAAGCACTTCAGGACTGTCACACTCTTaGCTCTTTTGTCCAACCTCCGGTCCCAGCTGCGCCCACTGCTCA +
Preference number: 2 (lower is better)
Translates to: SIHLCDLSTSGLSHS*LFCPTSGPSCAHCS
Trigger: TGAGCAGTGGGCGCAGCTGGGACCGGAGGTTGGACAAAAGAGCAAAGAGTGTGACAGTCCTGAAGTGCTTAGATCGCAAAGATGGATGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR GCA 90 bp GCCCCCTTCACCGCCTTCCTTCCTCTGCAAATTGTCCCTTCTACTCCCGTGTCTGGCACACATGGAAAATaGTCTTCAGGAATGCCTGTG +
Preference number: 2 (lower is better)
Translates to: APFTAFLPLQIVPSTPVSGTHGK*SSGMPV
Trigger: CACAGGCATTCCTGAAGAGCATTTTCCATGTGTGCC...AGACACGGGAGTAGAAGGGACAATTTGCAGAGGAAGGAAGGCGGTGAAGGGGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR GCA 90 bp ACTTCAGGACTGTCACACTCTTTGCTCTTTTGTCCAACCTCCGGTCCCAGCTGCCAGCCCACTGCATCTTaGTTCTGGCTAACAAGCGGT +
Preference number: 2 (lower is better)
Translates to: TSGLSHSLLFCPTSGPSCQPTAS*FWLTSG
Trigger: ACCGCTTGTTAGCCAGAAGCAAGATGCAGTGGGCTG...GCAGCTGGGACCGGAGGTTGGACAAAAGAGCAAAGAGTGTGACAGTCCTGAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR GCA 90 bp ATTTATGTGAGAGGGTTCAGCCCACTGTGGGTCCAGCAATCCCTGGGAGGTTGCTTGTTGAGAGCGCCATaGTCCCTCCATCCATCTTTG +
Preference number: 2 (lower is better)
Translates to: IYVRGFSPLWVQQSLGGCLLRAP*SLHPSL
Trigger: CAAAGATGGATGGAGGGAGCATGGCGCTCTCAACAA...GCAACCTCCCAGGGATTGCTGGACCCACAGTGGGCTGAACCCTCTCACATAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CCA 90 bp GAAGATGATGGAGGGCTTTCCCCTTCGGGAATTGCATTAGCAGAAGGCAGTTGTACTCTGGAGACCAGGTaGGCAGCCCACTGCATCTTG +
Preference number: 2 (lower is better)
Translates to: EDDGGLSPSGIALAEGSCTLETR*AAHCIL
Trigger: CAAGATGCAGTGGGCTGCCCACCTGGTCTCCAGAGT...ACAACTGCCTTCTGCTAATGCAATTCCCGAAGGGGAAAGCCCTCCATCATCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR GCA 90 bp GGTCTGTTGTTTCAACACCCTGATAGTCGGACTGAGAGACGTGCGCCTCTGCAAAACTCCCACATGGACTaGACACACTGTCATGCAGGA +
Preference number: 2 (lower is better)
Translates to: GLLFQHPDSRTERRAPLQNSHMD*THCHAG
Trigger: TCCTGCATGACAGTGTGTGCAGTCCATGTGGGAGTT...TTGCAGAGGCGCACGTCTCTCAGTCCGACTATCAGGGTGTTGAAACAACAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR-3UTR GCA 90 bp TATCTAACTAGTCCTGGTCAAGATGTGGCCCTGCCCAGTATGGACCCAGCCTTGTCTCTTCAGAGTGCCTaGATCACTGCCAGATTGCTG +
Preference number: 2 (lower is better)
Translates to: YLTSPGQDVALPSMDPALSLQSA*ITARLL
Trigger: CAGCAATCTGGCAGTGATGCAGGCACTCTGAAGAGA...CAAGGCTGGGTCCATACTGGGCAGGGCCACATCTTGACCAGGACTAGTTAGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR-3UTR GCA 90 bp AGACCAGGTGGGCAGCCCACTGCATCTTGCTTCTGGCTAACAAGCGGTTCTCCTTTTCCAGGCAGCCACTaGTCTAGTTCACAGATTTCA +
Preference number: 2 (lower is better)
Translates to: RPGGQPTASCFWLTSGSPFPGSH*SSSQIS
Trigger: TGAAATCTGTGAACTAGAGCAGTGGCTGCCTGGAAA...AGGAGAACCGCTTGTTAGCCAGAAGCAAGATGCAGTGGGCTGCCCACCTGGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR GCA 90 bp ATGATTTATGTGAGAGGGTTCAGCCCACTGTGGGTCCAGCAATCCCTGGGAGGTCCGCCTTCCTTCCTCTaGAAATTGTCCCTTCTACTC +
Preference number: 2 (lower is better)
Translates to: MIYVRGFSPLWVQQSLGGPPSFL*KLSLLL
Trigger: GAGTAGAAGGGACAATTTGCAGAGGAAGGAAGGCGG...ACCTCCCAGGGATTGCTGGACCCACAGTGGGCTGAACCCTCTCACATAAATCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CCA 90 bp CTTCCTGTAGGAGCTGGAGAGTTGGCTCCCTGGGTTAGGTGCATACTGCTCTTGTTCAGGTGGAGAATCTaGCCTGTCTTCTTCTTGAGG +
Preference number: 2 (lower is better)
Translates to: LPVGAGELAPWVRCILLLFRWRI*PVFFLR
Trigger: CCTCAAGAAGAAGACAGGCCAGATTCTCCACCTGAA...CAAGAGCAGTATGCACCTAACCCAGGGAGCCAACTCTCCAGCTCCTACAGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR-3UTR GCA 90 bp TGGGGTCTGTTGTTTCAACACCCTGATAGTCGGACTGAGAGACGTGCGCCTCTGCTGCACACACTGTCATaGAGGAATTCCATTAGCCAA +
Preference number: 2 (lower is better)
Translates to: WGLLFQHPDSRTERRAPLLHTLS*RNSISQ
Trigger: TTGGCTAATGGAATTCCTGCATGACAGTGTGTGCAG...CAGAGGCGCACGTCTCTCAGTCCGACTATCAGGGTGTTGAAACAACAGACCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR-3UTR CCA 90 bp GTTACACTCCGCGGCATTCACTGCTGTGGAGGGACTAGAAGTTTCCTGGAAGCTACTGCATCTTGCTTCTaGCTAACAAGCGGTTCTCCT +
Preference number: 2 (lower is better)
Translates to: VTLRGIHCCGGTRSFLEATASCF*LTSGSP
Trigger: AGGAGAACCGCTTGTTAGCCAGAAGCAAGATGCAGT...AGCTTCCAGGAAACTTCTAGTCCCTCCACAGCAGTGAATGCCGCGGAGTGTAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 90 bp TGTTCTTGGCAGAGCCTCTGGATTGCGACACATGACTCCTGCTCATaGGCTACTATGAGATCTGCTTCCTTCAGAACAATCTCCCATGGC +
Preference number: 2 (lower is better)
Translates to: CSWQSLWIATHDSCS*ATMRSASFRTISHG
Trigger: GCCATGGGAGATTGTTCTGAAGGAAGCAGATCTCATAGTAGCCAATGAGCAGGAGTCATGTGTCGCAATCCAGAGGCTCTGCCAAGAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR GCA 90 bp GTCCCTTCTACTCCCGTGTCTTATGGCTTGTTTTCTAATGCATGCTGGATATGGCTCCGCGGCATTCACTaGTGTGGAGGGACTAGAAGT +
Preference number: 2 (lower is better)
Translates to: VPSTPVSYGLFSNACWIWLRGIH*CGGTRS
Trigger: ACTTCTAGTCCCTCCACAGCAGTGAATGCCGCGGAG...CCATATCCAGCATGCATTAGAAAACAAGCCATAAGACACGGGAGTAGAAGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CCA 90 bp ATGATTTATGTGAGAGGGTTCAGCCCACTGTGGGTCCAGCAATCCCTGGGAGGTGGACTAGAAGTTTCCTaGAAGCTGCTTGTCTTTGAC +
Preference number: 2 (lower is better)
Translates to: MIYVRGFSPLWVQQSLGGGLEVS*KLLVFD
Trigger: GTCAAAGACAAGCAGCTTCCAGGAAACTTCTAGTCC...ACCTCCCAGGGATTGCTGGACCCACAGTGGGCTGAACCCTCTCACATAAATCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 90 bp TGTCCTCACCAGGTTGGCCTTTGGGCAAGCTTGTGCTTCATTCTCTaGATTAATGATTTATGTGAGAGGGTTCAGCCCACTGTGGGTCCA +
Preference number: 2 (lower is better)
Translates to: CPHQVGLWASLCFIL*INDLCERVQPTVGP
Trigger: TGGACCCACAGTGGGCTGAACCCTCTCACATAAATCATTAATCAAGAGAATGAAGCACAAGCTTGCCCAAAGGCCAACCTGGTGAGGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR TCA 90 bp TCACCGCCTTCCTTCCTCTGCAAATTGTCCCTTCTACTCCCGTGTCTTATGGCTGCTCATTGGCTACTATaGGATCTGCTTCCTTCAGAA +
Preference number: 2 (lower is better)
Translates to: SPPSFLCKLSLLLPCLMAAHWLL*DLLPSE
Trigger: TTCTGAAGGAAGCAGATCTCATAGTAGCCAATGAGC...AGCCATAAGACACGGGAGTAGAAGGGACAATTTGCAGAGGAAGGAAGGCGGTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CCA 90 bp TCCCCTTCGGGAATTGCATTAGCAGAAGGCAGTTGTAGGTTGTTTCTGTTCCCTTCAGGAATGCCTGTGTaGTTCTTCAGCTTGTGCGTG +
Preference number: 2 (lower is better)
Translates to: SPSGIALAEGSCRLFLFPSGMPV*FFSLCV
Trigger: CACGCACAAGCTGAAGAACCACACAGGCATTCCTGA...AGGGAACAGAAACAACCTACAACTGCCTTCTGCTAATGCAATTCCCGAAGGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR GCA 90 bp AGGGGATTCTGGGGTAGGTGGCCTTTATCTTACTCCATCTCTAAGGGCATTCCAAATGCTCTTCAGGAATaGCTGTGTGGTTCTTCAGCT +
Preference number: 2 (lower is better)
Translates to: RGFWGRWPLSYSISKGIPNALQE*LCGSSA
Trigger: AGCTGAAGAACCACACAGGCATTCCTGAAGAGCATT...TGGAATGCCCTTAGAGATGGAGTAAGATAAAGGCCACCTACCCCAGAATCCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 90 bp CACTGTCATGCAGGAATTCCATTAGCCAAGACCCCGGGGCAGAAGTaGGGTTTGCTTGTGTTTGTCTCAATAATTGACAATCTATTGGGC +
Preference number: 2 (lower is better)
Translates to: HCHAGIPLAKTPGQK*GLLVFVSIIDNLLG
Trigger: GCCCAATAGATTGTCAATTATTGAGACAAACACAAGCAAACCCAACTTCTGCCCCGGGGTCTTGGCTAATGGAATTCCTGCATGACAGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR-3UTR TCA 90 bp CCACTTCTTCAGTCATCTATGATCACTGTGACCGGTGTTTCTGAGTTAAGACAGTGCCTTCACTCTCTCTaGGGCACACATGGAAAATGC +
Preference number: 2 (lower is better)
Translates to: PLLQSSMITVTGVSELRQCLHSL*GTHGKC
Trigger: GCATTTTCCATGTGTGCCTCAGAGAGAGTGAAGGCA...CTGTCTTAACTCAGAAACACCGGTCACAGTGATCATAGATGACTGAAGAAGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CCA 90 bp TATCTAACTAGTCCTGGTCAAGATGTGGCCCTGCCCAGTATGGACCCAGCCTTGAAATTCTCATTTATCTaGCTGGGGTCTGTTGTTTCA +
Preference number: 2 (lower is better)
Translates to: YLTSPGQDVALPSMDPALKFSFI*LGSVVS
Trigger: TGAAACAACAGACCCCAGCCAGATAAATGAGAATTT...CAAGGCTGGGTCCATACTGGGCAGGGCCACATCTTGACCAGGACTAGTTAGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR-3UTR CCA 90 bp GCCTTCCTTCCTCTGCAAATTGTCCCTTCTACTCCCGTGTCTTATGGCTTGTTTTCTCTTTGCAACCGATaGAGACCTTTGCAGAAAACC +
Preference number: 2 (lower is better)
Translates to: AFLPLQIVPSTPVSYGLFSLCNR*RPLQKT
Trigger: GGTTTTCTGCAAAGGTCTCCATCGGTTGCAAAGAGA...AAACAAGCCATAAGACACGGGAGTAGAAGGGACAATTTGCAGAGGAAGGAAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CCA 90 bp CCACTTCTTCAGTCATCTATGATCACTGTGACCGGTGTTTCTGAGTTAAGACAGAGAAGGTTGTGTTCTTaGCAGAGCCTCTGGATTGCG +
Preference number: 2 (lower is better)
Translates to: PLLQSSMITVTGVSELRQRRLCS*QSLWIA
Trigger: CGCAATCCAGAGGCTCTGCCAAGAACACAACCTTCT...CTGTCTTAACTCAGAAACACCGGTCACAGTGATCATAGATGACTGAAGAAGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR TCA 90 bp AGGTGCCTGAAGCCTGGAATTTTAGCTGATGTGCCTGGACTTGCCCAGTTCTTAGTCTTTGACTTGTGTTaGAATGCTGAAGAAATGGGT +
Preference number: 2 (lower is better)
Translates to: RCLKPGILADVPGLAQFLVFDLC*NAEEMG
Trigger: ACCCATTTCTTCAGCATTTCAACACAAGTCAAAGAC...TAAGAACTGGGCAAGTCCAGGCACATCAGCTAAAATTCCAGGCTTCAGGCACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR TCA 90 bp GAAAACGGCATTACTCCATATTATTATGCTCACATTGTCTTAAGGATCTCCCATCTCTGGGTCCCTAGCTaGGGGACTCTGTTCTCAGTC +
Preference number: 2 (lower is better)
Translates to: ENGITPYYYAHIVLRISHLWVPS*GTLFSV
Trigger: GACTGAGAACAGAGTCCCTCAGCTAGGGACCCAGAG...ATGGGAGATCCTTAAGACAATGTGAGCATAATAATATGGAGTAATGCCGTTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR GCA 90 bp CCACTTCTTCAGTCATCTATGATCACTGTGACCGGTGTTTCTGAGTTAAGACAGGACTGTCACACTCTTTaGTCTTTTGTCCAACCTCCG +
Preference number: 2 (lower is better)
Translates to: PLLQSSMITVTGVSELRQDCHTL*SFVQPP
Trigger: CGGAGGTTGGACAAAAGAGCAAAGAGTGTGACAGTC...CTGTCTTAACTCAGAAACACCGGTCACAGTGATCATAGATGACTGAAGAAGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR TCA 90 bp GAAAACGGCATTACTCCATATTATTATGCTCACATTGTCTTAAGGATCTCCCATCTCAGTCCAGTTTGGTaGCCACAGTGCTCACCTCTC +
Preference number: 2 (lower is better)
Translates to: ENGITPYYYAHIVLRISHLSPVW*PQCSPL
Trigger: GAGAGGTGAGCACTGTGGTCACCAAACTGGACTGAG...ATGGGAGATCCTTAAGACAATGTGAGCATAATAATATGGAGTAATGCCGTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CCA 90 bp AGCGGTTCTCCTGTGGTAGCTACTGGATACTCTTGGCTCAACTTTTTCATCCTTTCTCTGAGGCACACATaGAAAATGCTCTTCAGGAAT +
Preference number: 2 (lower is better)
Translates to: SGSPVVATGYSWLNFFILSLRHT*KMLFRN
Trigger: ATTCCTGAAGAGCATTTTCCATGTGTGCCTCAGAGA...AAGGATGAAAAAGTTGAGCCAAGAGTATCCAGTAGCTACCACAGGAGAACCGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CCA 90 bp GCCTTCCTTCCTCTGCAAATTGTCCCTTCTACTCCCGTGTCTTATGGCTTGTTTGTAACGGAAGTCTTCTaGATAGAAGGTTGTGTTCTT +
Preference number: 2 (lower is better)
Translates to: AFLPLQIVPSTPVSYGLFVTEVF*IEGCVL
Trigger: AAGAACACAACCTTCTATCCAGAAGACTTCCGTTAC...AAACAAGCCATAAGACACGGGAGTAGAAGGGACAATTTGCAGAGGAAGGAAGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CCA 90 bp AGGTGCCTGAAGCCTGGAATTTTAGCTGATGTGCCTGGACTTGCCCAGTTCTTATTTTCTAATGCATGCTaGATATGGCGTAAAGCTACT +
Preference number: 2 (lower is better)
Translates to: RCLKPGILADVPGLAQFLFSNAC*IWRKAT
Trigger: AGTAGCTTTACGCCATATCCAGCATGCATTAGAAAA...TAAGAACTGGGCAAGTCCAGGCACATCAGCTAAAATTCCAGGCTTCAGGCACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 90 bp GCCTTGTCTGGGCTTGAGTCTCATCCTGTACATTGGTCTTATGAGTaGTTAGATCTGTGTGAAATCTTTCTCCAAGAGATAAGTTTCCCC +
Preference number: 2 (lower is better)
Translates to: ALSGLESHPVHWSYE*LDLCEIFLQEISFP
Trigger: GGGGAAACTTATCTCTTGGAGAAAGATTTCACACAGATCTAACAACTCATAAGACCAATGTACAGGATGAGACTCAAGCCCAGACAAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 90 bp CCTTTGCAGAAAACCACACTTATCAAATACAGGAAACAAGAGATCTaGTGGAGCCCAGTCGAAACAGGTATACCAGCAATAAAACTCGTG +
Preference number: 2 (lower is better)
Translates to: PLQKTTLIKYRKQEI*WSPVETGIPAIKLV
Trigger: CACGAGTTTTATTGCTGGTATACCTGTTTCGACTGGGCTCCACAAGATCTCTTGTTTCCTGTATTTGATAAGTGTGGTTTTCTGCAAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 90 bp TCATCCTTCATCAAGGAGACGTCTCTTTGCAACCGATGGAGACCTTaGCAGAAAACCACACTTATCAAATACAGGAAACAAGAGATCTTG +
Preference number: 2 (lower is better)
Translates to: SSFIKETSLCNRWRP*QKTTLIKYRKQEIL
Trigger: CAAGATCTCTTGTTTCCTGTATTTGATAAGTGTGGTTTTCTGCAAAGGTCTCCATCGGTTGCAAAGAGACGTCTCCTTGATGAAGGATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 72 bp TTAGGTGCATACTGCTCTTGCAGGGGACCGGAGCTCTaGTCCAAGCCCGGTTCCCAGCTCCCAGGTCAGCCT +
Preference number: 3 (lower is better)
Translates to: LGAYCSCRGPEL*SKPGSQLPGQP
Trigger: AGGCTGACCTGGGAGCTGGGAACCGGGCTTGGAGCAGAGCTCCGGTCCCCTGCAAGAGCAGTATGCACCTAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR GCA 72 bp GAGCTGGAGAGTTGGCTCCCTGGGTTAGGTGCATACTaGTCTTGCAGGGGACCGGAGCTCTGCTCCAAGCCC +
Preference number: 3 (lower is better)
Translates to: ELESWLPGLGAY*SCRGPELCSKP
Trigger: GGGCTTGGAGCAGAGCTCCGGTCCCCTGCAAGAGCAGTATGCACCTAACCCAGGGAGCCAACTCTCCAGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR GCA 72 bp CCTGTAGGAGCTGGAGAGTTGGCTCCCTGGGTTAGGTaGATACTGCTCTTGCAGGGGACCGGAGCTCTGCTC +
Preference number: 3 (lower is better)
Translates to: PVGAGELAPWVR*ILLLQGTGALL
Trigger: GAGCAGAGCTCCGGTCCCCTGCAAGAGCAGTATGCACCTAACCCAGGGAGCCAACTCTCCAGCTCCTACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CCA 72 bp CTTCAGGAATGCCTGTGTGGTTCTTCAGCTTGTGCGTaGAATGCTGAGGACCCGGGGGCTGGGGCAGCAGGA +
Preference number: 3 (lower is better)
Translates to: LQECLCGSSACA*NAEDPGAGAAG
Trigger: TCCTGCTGCCCCAGCCCCCGGGTCCTCAGCATTCCACGCACAAGCTGAAGAACCACACAGGCATTCCTGAAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 72 bp ACACTCTGGAGACCAGGTGGGCAGCCCACTGCATCTTaGTTCTGGCTAACAAGCGGTTCTCCTGTGGTAGCT +
Preference number: 3 (lower is better)
Translates to: TLWRPGGQPTAS*FWLTSGSPVVA
Trigger: AGCTACCACAGGAGAACCGCTTGTTAGCCAGAAGCAAGATGCAGTGGGCTGCCCACCTGGTCTCCAGAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 72 bp CACTCTTTGCTCTTTTGTCCAACCTCCGGTCCCAGCTaGGCCCACTGCTCAGGACGTAACGGAAGTCTTCTG +
Preference number: 3 (lower is better)
Translates to: HSLLFCPTSGPS*AHCSGRNGSLL
Trigger: CAGAAGACTTCCGTTACGTCCTGAGCAGTGGGCGCAGCTGGGACCGGAGGTTGGACAAAAGAGCAAAGAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 72 bp GCGCCTCTGCAAGTCTCTTCAGAGTGCCTGCATCACTaGCAGATTGCTGAAGAACTCCCACATGGACTGCAC +
Preference number: 3 (lower is better)
Translates to: APLQVSSECLHH*QIAEELPHGLH
Trigger: GTGCAGTCCATGTGGGAGTTCTTCAGCAATCTGGCAGTGATGCAGGCACTCTGAAGAGACTTGCAGAGGCGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR GCA 72 bp AACACCCTGATAGTCGGACTGAGAGACGTGCGCCTCTaGAAGTCTCTTCAGAGTGCCTGCATCACTGCCAGA +
Preference number: 3 (lower is better)
Translates to: NTLIVGLRDVRL*KSLQSACITAR
Trigger: TCTGGCAGTGATGCAGGCACTCTGAAGAGACTTGCAGAGGCGCACGTCTCTCAGTCCGACTATCAGGGTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CCA 72 bp GCTGCGCCCACTGCTCAGGACGTAACGGAAGTCTTCTaGATAGAAGGTTGTGTTCTTGGCAGAGCCTCTGGA +
Preference number: 3 (lower is better)
Translates to: AAPTAQDVTEVF*IEGCVLGRASG
Trigger: TCCAGAGGCTCTGCCAAGAACACAACCTTCTATCCAGAAGACTTCCGTTACGTCCTGAGCAGTGGGCGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CAA 90 bp CCTCTGCAAGTCTCTTCAGAGTGCCTGCATCACTGCCAGATTGCTGAAGAACTCTGGCCTGTCTTCTTCTaGAGGACACGCCGAGAGGTC +
Preference number: 3 (lower is better)
Translates to: PLQVSSECLHHCQIAEELWPVFF*RTRREV
Trigger: GACCTCTCGGCGTGTCCTCAAGAAGAAGACAGGCCA...GAGTTCTTCAGCAATCTGGCAGTGATGCAGGCACTCTGAAGAGACTTGCAGAGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR TCA 72 bp AGATCTTCAGGTGGAGAATCTGGCCTGTCTTCTTCTTaGGGACACGCCGAGAGGTCAGTACATGGGGGACAC +
Preference number: 3 (lower is better)
Translates to: RSSGGESGLSSS*GHAERSVHGGH
Trigger: GTGTCCCCCATGTACTGACCTCTCGGCGTGTCCTCAAGAAGAAGACAGGCCAGATTCTCCACCTGAAGATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR GCA 72 bp GCTGAAGAACTCCCACATGGACTGCACACACTGTCATaGAGGAATTCCATTAGCCAAGACCCCGGGGCAGAA +
Preference number: 3 (lower is better)
Translates to: AEELPHGLHTLS*RNSISQDPGAE
Trigger: TTCTGCCCCGGGGTCTTGGCTAATGGAATTCCTGCATGACAGTGTGTGCAGTCCATGTGGGAGTTCTTCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR GCA 72 bp AGAGACGTGCGCCTCTGCAAGTCTCTTCAGAGTGCCTaGATCACTGCCAGATTGCTGAAGAACTCCCACATG +
Preference number: 3 (lower is better)
Translates to: RDVRLCKSLQSA*ITARLLKNSHM
Trigger: CATGTGGGAGTTCTTCAGCAATCTGGCAGTGATGCAGGCACTCTGAAGAGACTTGCAGAGGCGCACGTCTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR-3UTR CAA 90 bp TCACCGCCTTCCTTCCTCTGCAAATTGTCCCTTCTACTCCCGTGTCTTATGGCTCTTCTGGCTTCAGGTTaGTTGAGAGCGCCATGCTCC +
Preference number: 3 (lower is better)
Translates to: SPPSFLCKLSLLLPCLMALLASG*LRAPCS
Trigger: GGAGCATGGCGCTCTCAACAAACCTGAAGCCAGAAG...AGCCATAAGACACGGGAGTAGAAGGGACAATTTGCAGAGGAAGGAAGGCGGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 72 bp AGAAGAACAGGGTCTGTTACACTCCGCGGCATTCACTaGTGTGGAGGGACTAGAAGTTTCCTGGAAGCTGCT +
Preference number: 3 (lower is better)
Translates to: RRTGSVTLRGIH*CGGTRSFLEAA
Trigger: AGCAGCTTCCAGGAAACTTCTAGTCCCTCCACAGCAGTGAATGCCGCGGAGTGTAACAGACCCTGTTCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 72 bp CAGAAGACCAGCATGCGGGGGTCCTGTATTCCAAGATaGAGAGACAACCAAATGAGCTCACAGGTTGGACTG +
Preference number: 3 (lower is better)
Translates to: QKTSMRGSCIPR*RDNQMSSQVGL
Trigger: CAGTCCAACCTGTGAGCTCATTTGGTTGTCTCTCCATCTTGGAATACAGGACCCCCGCATGCTGGTCTTCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CAA 90 bp GGTCTGTTGTTTCAACACCCTGATAGTCGGACTGAGAGACGTGCGCCTCTGCAATGCATCACTGCCAGATaGCTGAAGAACTCCCACATG +
Preference number: 3 (lower is better)
Translates to: GLLFQHPDSRTERRAPLQCITAR*LKNSHM
Trigger: CATGTGGGAGTTCTTCAGCAATCTGGCAGTGATGCA...TTGCAGAGGCGCACGTCTCTCAGTCCGACTATCAGGGTGTTGAAACAACAGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR-3UTR CAA 90 bp ATGATTTATGTGAGAGGGTTCAGCCCACTGTGGGTCCAGCAATCCCTGGGAGGTTCCTTCCTCTGCAAATaGTCCCTTCTACTCCCGTGT +
Preference number: 3 (lower is better)
Translates to: MIYVRGFSPLWVQQSLGGSFLCK*SLLLPC
Trigger: ACACGGGAGTAGAAGGGACAATTTGCAGAGGAAGGA...ACCTCCCAGGGATTGCTGGACCCACAGTGGGCTGAACCCTCTCACATAAATCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CAA 90 bp CAGCATGCGGGGGTCCTGTATTCCAAGATGGAGAGACAACCAAATGAGCTCACATATGTCCTCACCAGGTaGGCCTTTGGGCAAGCTTGT +
Preference number: 3 (lower is better)
Translates to: QHAGVLYSKMERQPNELTYVLTR*AFGQAC
Trigger: ACAAGCTTGCCCAAAGGCCAACCTGGTGAGGACATA...TGTGAGCTCATTTGGTTGTCTCTCCATCTTGGAATACAGGACCCCCGCATGCTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR TCA 72 bp AGTCTCTTCAGAGTGCCTGCATCACTGCCAGATTGCTaGAGAACTCCCACATGGACTGCACACACTGTCATG +
Preference number: 3 (lower is better)
Translates to: SLFRVPASLPDC*RTPTWTAHTVM
Trigger: CATGACAGTGTGTGCAGTCCATGTGGGAGTTCTTCAGCAATCTGGCAGTGATGCAGGCACTCTGAAGAGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR-3UTR CAA 90 bp AGGTGCCTGAAGCCTGGAATTTTAGCTGATGTGCCTGGACTTGCCCAGTTCTTATCCCTCCATCCATCTTaGCGATCTAAGCACTTCAGG +
Preference number: 3 (lower is better)
Translates to: RCLKPGILADVPGLAQFLSLHPS*RSKHFR
Trigger: CCTGAAGTGCTTAGATCGCAAAGATGGATGGAGGGA...TAAGAACTGGGCAAGTCCAGGCACATCAGCTAAAATTCCAGGCTTCAGGCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR TCA 72 bp CTTAGGCAATGTAATGGTGTATTTCGAAGGCCAAGCTaGGAGCCTACGTACCCAGTGGTCACTGGTGGGAAT +
Preference number: 3 (lower is better)
Translates to: LRQCNGVFRRPS*EPTYPVVTGGN
Trigger: ATTCCCACCAGTGACCACTGGGTACGTAGGCTCTCAGCTTGGCCTTCGAAATACACCATTACATTGCCTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 72 bp TCTTGGCAGAGCCTCTGGATTGCGACACATGACTCCTaGTCATTGGCTACTATGAGATCTGCTTCCTTCAGA +
Preference number: 3 (lower is better)
Translates to: SWQSLWIATHDS*SLATMRSASFR
Trigger: TCTGAAGGAAGCAGATCTCATAGTAGCCAATGAGCAGGAGTCATGTGTCGCAATCCAGAGGCTCTGCCAAGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 72 bp TGCTCACATTGTCTTAAGGATCTCCCATCCCCAGAATaGTTTCAGATCTCTCTCCCTGACAGTGCCCCAATG +
Preference number: 3 (lower is better)
Translates to: CSHCLKDLPSPE*FQISLPDSAPM
Trigger: CATTGGGGCACTGTCAGGGAGAGAGATCTGAAAGCATTCTGGGGATGGGAGATCCTTAAGACAATGTGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 72 bp CAGGAAGGTCTGGAAACTTGTTGGCCTTATTGTCCTTaGTTTAGGCTAGATGGCTGGGCGCCTTCTAGTTTC +
Preference number: 3 (lower is better)
Translates to: QEGLETCWPYCP*FRLDGWAPSSF
Trigger: GAAACTAGAAGGCGCCCAGCCATCTAGCCTAAAGCAAGGACAATAAGGCCAACAAGTTTCCAGACCTTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 72 bp CTTCTGGATAGAAGGTTGTGTTCTTGGCAGAGCCTCTaGATTGCGACACATGACTCCTGCTCATTGGCTACT +
Preference number: 3 (lower is better)
Translates to: LLDRRLCSWQSL*IATHDSCSLAT
Trigger: AGTAGCCAATGAGCAGGAGTCATGTGTCGCAATCCAGAGGCTCTGCCAAGAACACAACCTTCTATCCAGAAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CAA 90 bp AGGGGATTCTGGGGTAGGTGGCCTTTATCTTACTCCATCTCTAAGGGCATTCCACATGACTCCTGCTCATaGGCTACTATGAGATCTGCT +
Preference number: 3 (lower is better)
Translates to: RGFWGRWPLSYSISKGIPHDSCS*ATMRSA
Trigger: AGCAGATCTCATAGTAGCCAATGAGCAGGAGTCATG...TGGAATGCCCTTAGAGATGGAGTAAGATAAAGGCCACCTACCCCAGAATCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR TCA 72 bp GGATTGCGACACATGACTCCTGCTCATTGGCTACTATaGGATCTGCTTCCTTCAGAACAATCTCCCATGGCA +
Preference number: 3 (lower is better)
Translates to: GLRHMTPAHWLL*DLLPSEQSPMA
Trigger: TGCCATGGGAGATTGTTCTGAAGGAAGCAGATCTCATAGTAGCCAATGAGCAGGAGTCATGTGTCGCAATCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR GCA 72 bp ATCACTGCCAGATTGCTGAAGAACTCCCACATGGACTaGACACACTGTCATGCAGGAATTCCATTAGCCAAG +
Preference number: 3 (lower is better)
Translates to: ITARLLKNSHMD*THCHAGIPLAK
Trigger: CTTGGCTAATGGAATTCCTGCATGACAGTGTGTGCAGTCCATGTGGGAGTTCTTCAGCAATCTGGCAGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR-3UTR CAA 90 bp AGGGGATTCTGGGGTAGGTGGCCTTTATCTTACTCCATCTCTAAGGGCATTCCAAACCGATGGAGACCTTaGCAGAAAACCACACTTATC +
Preference number: 3 (lower is better)
Translates to: RGFWGRWPLSYSISKGIPNRWRP*QKTTLI
Trigger: GATAAGTGTGGTTTTCTGCAAAGGTCTCCATCGGTT...TGGAATGCCCTTAGAGATGGAGTAAGATAAAGGCCACCTACCCCAGAATCCCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CAA 90 bp AGGTGCCTGAAGCCTGGAATTTTAGCTGATGTGCCTGGACTTGCCCAGTTCTTATTTCCTGGAAGCTGCTaGTCTTTGACTTGTGTTGAA +
Preference number: 3 (lower is better)
Translates to: RCLKPGILADVPGLAQFLFPGSC*SLTCVE
Trigger: TTCAACACAAGTCAAAGACAAGCAGCTTCCAGGAAA...TAAGAACTGGGCAAGTCCAGGCACATCAGCTAAAATTCCAGGCTTCAGGCACCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR-3UTR CAA 90 bp CAGCATGCGGGGGTCCTGTATTCCAAGATGGAGAGACAACCAAATGAGCTCACATCGAGCTATAGTCATTaGAGAAAAGGAAATCTCAGC +
Preference number: 3 (lower is better)
Translates to: QHAGVLYSKMERQPNELTSSYSH*RKGNLS
Trigger: GCTGAGATTTCCTTTTCTCAAATGACTATAGCTCGA...TGTGAGCTCATTTGGTTGTCTCTCCATCTTGGAATACAGGACCCCCGCATGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR TCA 72 bp TCTTTGACTTGTGTTGAAATGCTGAAGAAATGGGTCTaGTGTCAGCAGAGGAGACACACTCTGGAGACCAGG +
Preference number: 3 (lower is better)
Translates to: SLTCVEMLKKWV*CQQRRHTLETR
Trigger: CCTGGTCTCCAGAGTGTGTCTCCTCTGCTGACATCAGACCCATTTCTTCAGCATTTCAACACAAGTCAAAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 72 bp ACAAGCGGTTCTCCTGTGGTAGCTACTGGATACTCTTaGCTCAACTTTTTCATCCTTCATCAAGGAGACGTC +
Preference number: 3 (lower is better)
Translates to: TSGSPVVATGYS*LNFFILHQGDV
Trigger: GACGTCTCCTTGATGAAGGATGAAAAAGTTGAGCCAAGAGTATCCAGTAGCTACCACAGGAGAACCGCTTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR TCA 72 bp AGGTTGGCCTTTGGGCAAGCTTGTGCTTCATTCTCTTaGTTAATGATTTATGTGAGAGGGTTCAGCCCACTG +
Preference number: 3 (lower is better)
Translates to: RLAFGQACASFS*LMIYVRGFSPL
Trigger: CAGTGGGCTGAACCCTCTCACATAAATCATTAATCAAGAGAATGAAGCACAAGCTTGCCCAAAGGCCAACCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR TCA 72 bp ATCTCTAAGGGCATTCCATTAAAAGGGCATGGGAGCTaGAACCTGTTACCAGGAAGGTCTGGAAACTTGTTG +
Preference number: 3 (lower is better)
Translates to: ISKGIPLKGHGS*NLLPGRSGNLL
Trigger: CAACAAGTTTCCAGACCTTCCTGGTAACAGGTTTCAGCTCCCATGCCCTTTTAATGGAATGCCCTTAGAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 72 bp AGCATGAGCTTCCTGGAAAATTCTCATTTATCTGGCTaGGGTCTGTTGTTTCAACACCCTGATAGTCGGACT +
Preference number: 3 (lower is better)
Translates to: SMSFLENSHLSG*GLLFQHPDSRT
Trigger: AGTCCGACTATCAGGGTGTTGAAACAACAGACCCCAGCCAGATAAATGAGAATTTTCCAGGAAGCTCATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR GCA 72 bp ATATGTCCTCACCAGGTTGGCCTTTGGGCAAGCTTGTaGTTCATTCTCTTGATTAATGATTTATGTGAGAGG +
Preference number: 3 (lower is better)
Translates to: ICPHQVGLWASL*FILLINDLCER
Trigger: CCTCTCACATAAATCATTAATCAAGAGAATGAAGCACAAGCTTGCCCAAAGGCCAACCTGGTGAGGACATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CCA 72 bp CCAGCCTTGTCTGGGCTTGAGTCTCATCCTGTACATTaGTCTTATGAGTTGTTAGATCTGTGTGAAATCTTT +
Preference number: 3 (lower is better)
Translates to: PALSGLESHPVH*SYELLDLCEIF
Trigger: AAAGATTTCACACAGATCTAACAACTCATAAGACCAATGTACAGGATGAGACTCAAGCCCAGACAAGGCTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR TCA 72 bp GCAGAAGTTGGGTTTGCTTGTGTTTGTCTCAATAATTaGCAATCTATTGGGCTAGCAACACTGAAAGCAAGA +
Preference number: 3 (lower is better)
Translates to: AEVGFACVCLNN*QSIGLATLKAR
Trigger: TCTTGCTTTCAGTGTTGCTAGCCCAATAGATTGTCAATTATTGAGACAAACACAAGCAAACCCAACTTCTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CCA 72 bp ACCACACTTATCAAATACAGGAAACAAGAGATCTTGTaGAGCCCAGTCGAAACAGGTATACCAGCAATAAAA +
Preference number: 3 (lower is better)
Translates to: TTLIKYRKQEIL*SPVETGIPAIK
Trigger: TTTTATTGCTGGTATACCTGTTTCGACTGGGCTCCACAAGATCTCTTGTTTCCTGTATTTGATAAGTGTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp ACCGGAGCTCTGCTCCAAGCCCGGTTCCCAGCTCCCAGGTCAGCCTCTCGCGTTGATGTGGAGAAGTGTTaGGATTGCGGCACCAGGGGC +
Preference number: 4 (lower is better)
Translates to: TGALLQARFPAPRSASRVDVEKC*DCGTRG
Trigger: GCCCCTGGTGCCGCAATCCCAACACTTCTCCACATC...AACGCGAGAGGCTGACCTGGGAGCTGGGAACCGGGCTTGGAGCAGAGCTCCGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp CTCTGCTCCAAGCCCGGTTCCCAGCTCCCAGGTCAGCCTCTCGCGTTTAGATCTCTGGGGCTGCCTCCGTaGAACCATGGAGCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: LCSKPGSQLPGQPLAFRSLGLPP*NHGAGA
Trigger: AGCACCAGCTCCATGGTTCCACGGAGGCAGCCCCAG...AGATCTAAACGCGAGAGGCTGACCTGGGAGCTGGGAACCGGGCTTGGAGCAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 72 bp GGAGAGTTGGCTCCCTGGGTTAGGTGCATACTGCTCTaGCAGGGGACCGGAGCTCTGCTCCAAGCCCGGTTC +
Preference number: 4 (lower is better)
Translates to: GELAPWVRCILL*QGTGALLQARF
Trigger: GAACCGGGCTTGGAGCAGAGCTCCGGTCCCCTGCAAGAGCAGTATGCACCTAACCCAGGGAGCCAACTCTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp GCCCACTGTGGGTCCAGCAATCCCTGGGAGGTTGCCCTGGGTGGTAGCAGAAAGGATGTGGAGAAGTGTTaGGATTGCGGCACCAGGGGC +
Preference number: 4 (lower is better)
Translates to: AHCGSSNPWEVALGGSRKDVEKC*DCGTRG
Trigger: GCCCCTGGTGCCGCAATCCCAACACTTCTCCACATC...CTTTCTGCTACCACCCAGGGCAACCTCCCAGGGATTGCTGGACCCACAGTGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp CTCTGCTCCAAGCCCGGTTCCCAGCTCCCAGGTCAGCCTCTCGCGTTTAGATCTGAGTGTACCAGGCAATaGCCTCACCATTGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: LCSKPGSQLPGQPLAFRSECTRQ*PHHWAC
Trigger: GCAAGCCCAATGGTGAGGCCATTGCCTGGTACACTC...AGATCTAAACGCGAGAGGCTGACCTGGGAGCTGGGAACCGGGCTTGGAGCAGAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR GCA 90 bp CTGAGAGACGTGCGCCTCTGCAAGTCTCTTCAGAGTGCCTGCATCACTGCCAGAGAACCATGGAGCTGGTaGTCTGCTTTCCCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: LRDVRLCKSLQSACITAREPWSW*SAFPGC
Trigger: GCAGCCTGGGAAAGCAGAGCACCAGCTCCATGGTTC...TCTGGCAGTGATGCAGGCACTCTGAAGAGACTTGCAGAGGCGCACGTCTCTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp GGTCTGTTGTTTCAACACCCTGATAGTCGGACTGAGAGACGTGCGCCTCTGCAACTCACGTTCTCGGCTTaGGGTGTGTGGGCGGTGAGC +
Preference number: 4 (lower is better)
Translates to: GLLFQHPDSRTERRAPLQLTFSA*GVWAVS
Trigger: GCTCACCGCCCACACACCCCAAGCCGAGAACGTGAG...TTGCAGAGGCGCACGTCTCTCAGTCCGACTATCAGGGTGTTGAAACAACAGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 72 bp CACACTCTGGAGACCAGGTGGGCAGCCCACTGCATCTaGCTTCTGGCTAACAAGCGGTTCTCCTGTGGTAGC +
Preference number: 4 (lower is better)
Translates to: HTLETRWAAHCI*LLANKRFSCGS
Trigger: GCTACCACAGGAGAACCGCTTGTTAGCCAGAAGCAAGATGCAGTGGGCTGCCCACCTGGTCTCCAGAGTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR TCA 90 bp GCCCACTGTGGGTCCAGCAATCCCTGGGAGGTTGCCCTGGGTGGTAGCAGAAAGTTTCATTGGAGGAGTTaGCAAGCCTCACAAAGAGGC +
Preference number: 4 (lower is better)
Translates to: AHCGSSNPWEVALGGSRKFHWRS*QASQRG
Trigger: GCCTCTTTGTGAGGCTTGTCAACTCCTCCAATGAAA...CTTTCTGCTACCACCCAGGGCAACCTCCCAGGGATTGCTGGACCCACAGTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp CCCGGTTCCCAGCTCCCAGGTCAGCCTCTCGCGTTTAGATCTTCAGGTGGAGAACAGGCTTGCTTCCAGTaGATAGGAGTGTACCAGGCA +
Preference number: 4 (lower is better)
Translates to: PGSQLPGQPLAFRSSGGEQACFQ*IGVYQA
Trigger: TGCCTGGTACACTCCTATCCACTGGAAGCAAGCCTG...TTCTCCACCTGAAGATCTAAACGCGAGAGGCTGACCTGGGAGCTGGGAACCGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 72 bp GGTCAAGATGTGGCCCTGCCCAGTATGGACCCAGCCTaGTCTGGGCTTGAGTCTCATCCTGTACATTGGTCT +
Preference number: 4 (lower is better)
Translates to: GQDVALPSMDPA*SGLESHPVHWS
Trigger: AGACCAATGTACAGGATGAGACTCAAGCCCAGACAAGGCTGGGTCCATACTGGGCAGGGCCACATCTTGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 72 bp TCTAAGCACTTCAGGACTGTCACACTCTTTGCTCTTTaGTCCAACCTCCGGTCCCAGCTGCGCCCACTGCTC +
Preference number: 4 (lower is better)
Translates to: SKHFRTVTLFAL*SNLRSQLRPLL
Trigger: GAGCAGTGGGCGCAGCTGGGACCGGAGGTTGGACAAAAGAGCAAAGAGTGTGACAGTCCTGAAGTGCTTAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR GCA 90 bp GGTTTCAGTCTGACGTCATCACACATGCAGCACGCATGCTCCCCTCGTATCCACGAGAAGTGTTGGGATTaGGGCACCAGGGGCTCTTAT +
Preference number: 4 (lower is better)
Translates to: GFSLTSSHMQHACSPRIHEKCWD*GTRGSY
Trigger: ATAAGAGCCCCTGGTGCCGCAATCCCAACACTTCTC...GTGGATACGAGGGGAGCATGCGTGCTGCATGTGTGATGACGTCAGACTGAAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp GCGGCATTCACTGCTGTGGAGGGACTAGAAGTTTCCTGGAAGCTGCTTGTCTTTGTCCGTTGGTGGCTGTaGCTTTGCTTCCGAAGCTGC +
Preference number: 4 (lower is better)
Translates to: AAFTAVEGLEVSWKLLVFVRWWL*LCFRSC
Trigger: GCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGAC...AAAGACAAGCAGCTTCCAGGAAACTTCTAGTCCCTCCACAGCAGTGAATGCCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp ATGATTTATGTGAGAGGGTTCAGCCCACTGTGGGTCCAGCAATCCCTGGGAGGTGAGTGTACCAGGCAATaGCCTCACCATTGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: MIYVRGFSPLWVQQSLGGECTRQ*PHHWAC
Trigger: GCAAGCCCAATGGTGAGGCCATTGCCTGGTACACTC...ACCTCCCAGGGATTGCTGGACCCACAGTGGGCTGAACCCTCTCACATAAATCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR TCA 90 bp CCCAGCTCCCAGGTCAGCCTCTCGCGTTTAGATCTTCAGGTGGAGAATCTGGCCAATGTCCGAGTCATGTaGGTCAATCAGAGAGCTGTA +
Preference number: 4 (lower is better)
Translates to: PSSQVSLSRLDLQVENLANVRVM*VNQRAV
Trigger: TACAGCTCTCTGATTGACTCACATGACTCGGACATT...GGCCAGATTCTCCACCTGAAGATCTAAACGCGAGAGGCTGACCTGGGAGCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp GGTCTGTTGTTTCAACACCCTGATAGTCGGACTGAGAGACGTGCGCCTCTGCAACAATGGCCTCACCATTaGGCTTGCACAAGATGGTCG +
Preference number: 4 (lower is better)
Translates to: GLLFQHPDSRTERRAPLQQWPHH*ACTRWS
Trigger: CGACCATCTTGTGCAAGCCCAATGGTGAGGCCATTG...TTGCAGAGGCGCACGTCTCTCAGTCCGACTATCAGGGTGTTGAAACAACAGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp GGTCTGTTGTTTCAACACCCTGATAGTCGGACTGAGAGACGTGCGCCTCTGCAATGGTTTGGGCTTGGTTaGCTGAGGCTTGAGCTGTGT +
Preference number: 4 (lower is better)
Translates to: GLLFQHPDSRTERRAPLQWFGLG*LRLELC
Trigger: ACACAGCTCAAGCCTCAGCCAACCAAGCCCAAACCA...TTGCAGAGGCGCACGTCTCTCAGTCCGACTATCAGGGTGTTGAAACAACAGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 72 bp TGGCCCTGCCCAGTATGGACCCAGCCTTGTCTGGGCTaGAGTCTCATCCTGTACATTGGTCTTATGAGTTGT +
Preference number: 4 (lower is better)
Translates to: WPCPVWTQPCLG*SLILYIGLMSC
Trigger: ACAACTCATAAGACCAATGTACAGGATGAGACTCAAGCCCAGACAAGGCTGGGTCCATACTGGGCAGGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 72 bp TCCACGCCCCCTTCACCGCCTTCCTTCCTCTGCAAATaGTCCCTTCTACTCCCGTGTCTTATGGCTTGTTTT +
Preference number: 4 (lower is better)
Translates to: STPPSPPSFLCK*SLLLPCLMACF
Trigger: AAAACAAGCCATAAGACACGGGAGTAGAAGGGACAATTTGCAGAGGAAGGAAGGCGGTGAAGGGGGCGTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR TCA 90 bp CTTCCTGTAGGAGCTGGAGAGTTGGCTCCCTGGGTTAGGTGCATACTGCTCTTGTTTCATTGGAGGAGTTaGCAAGCCTCACAAAGAGGC +
Preference number: 4 (lower is better)
Translates to: LPVGAGELAPWVRCILLLFHWRS*QASQRG
Trigger: GCCTCTTTGTGAGGCTTGTCAACTCCTCCAATGAAA...CAAGAGCAGTATGCACCTAACCCAGGGAGCCAACTCTCCAGCTCCTACAGGAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR GCA 90 bp ATCACTGCCAGATTGCTGAAGAACTCCCACATGGACTGCACACACTGTCATGCAATGGAGCTGGTGCTCTaGTTTCCCAGGCTGCTGTCT +
Preference number: 4 (lower is better)
Translates to: ITARLLKNSHMDCTHCHAMELVL*FPRLLS
Trigger: AGACAGCAGCCTGGGAAAGCAGAGCACCAGCTCCAT...TGCATGACAGTGTGTGCAGTCCATGTGGGAGTTCTTCAGCAATCTGGCAGTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR GCA 90 bp CCTCTGCAAGTCTCTTCAGAGTGCCTGCATCACTGCCAGATTGCTGAAGAACTCGAGAAGTGTTGGGATTaGGGCACCAGGGGCTCTTAT +
Preference number: 4 (lower is better)
Translates to: PLQVSSECLHHCQIAEELEKCWD*GTRGSY
Trigger: ATAAGAGCCCCTGGTGCCGCAATCCCAACACTTCTC...GAGTTCTTCAGCAATCTGGCAGTGATGCAGGCACTCTGAAGAGACTTGCAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp GATCTGTGTGAAATCTTTCTCCAAGAGATAAGTTTCCCCTCTGGCTGGTGCCGGAGGCTGCTGTCTTTGTaGGAGCAGCTCAGGATGGTG +
Preference number: 4 (lower is better)
Translates to: DLCEIFLQEISFPSGWCRRLLSL*EQLRMV
Trigger: CACCATCCTGAGCTGCTCCCACAAAGACAGCAGCCT...CCGGCACCAGCCAGAGGGGAAACTTATCTCTTGGAGAAAGATTTCACACAGATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp CTCATTTATCTGGCTGGGGTCTGTTGTTTCAACACCCTGATAGTCGGACTGAGAGTCCGTTGGTGGCTGTaGCTTTGCTTCCGAAGCTGC +
Preference number: 4 (lower is better)
Translates to: LIYLAGVCCFNTLIVGLRVRWWL*LCFRSC
Trigger: GCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGAC...TCTCAGTCCGACTATCAGGGTGTTGAAACAACAGACCCCAGCCAGATAAATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp TATCTAACTAGTCCTGGTCAAGATGTGGCCCTGCCCAGTATGGACCCAGCCTTGCCAAACAAAGTCCGTTaGTGGCTGTGGCTTTGCTTC +
Preference number: 4 (lower is better)
Translates to: YLTSPGQDVALPSMDPALPNKVR*WLWLCF
Trigger: GAAGCAAAGCCACAGCCACCAACGGACTTTGTTTGG...CAAGGCTGGGTCCATACTGGGCAGGGCCACATCTTGACCAGGACTAGTTAGATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp GTAGGAGCTGGAGAGTTGGCTCCCTGGGTTAGGTGCATACTGCTCTTGCAGGGGATCCATCCAAACATGTaGTTTCTCATTGATGGGACC +
Preference number: 4 (lower is better)
Translates to: VGAGELAPWVRCILLLQGIHPNM*FLIDGT
Trigger: GGTCCCATCAATGAGAAACCACATGTTTGGATGGAT...CCCCTGCAAGAGCAGTATGCACCTAACCCAGGGAGCCAACTCTCCAGCTCCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR TCA 90 bp GTAGGAGCTGGAGAGTTGGCTCCCTGGGTTAGGTGCATACTGCTCTTGCAGGGGTCACAAAGAGGCCCTTaGTATTTACCTCAGCTATTT +
Preference number: 4 (lower is better)
Translates to: VGAGELAPWVRCILLLQGSQRGP*YLPQLF
Trigger: AAATAGCTGAGGTAAATATCAAGGGCCTCTTTGTGA...CCCCTGCAAGAGCAGTATGCACCTAACCCAGGGAGCCAACTCTCCAGCTCCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR TCA 90 bp TGTTGTTTCAACACCCTGATAGTCGGACTGAGAGACGTGCGCCTCTGCAAGTCTTGGTTGGCTGAGGCTTaGGCTGTGTATCTAAACTGC +
Preference number: 4 (lower is better)
Translates to: CCFNTLIVGLRDVRLCKSWLAEA*AVYLNC
Trigger: GCAGTTTAGATACACAGCTCAAGCCTCAGCCAACCA...AGACTTGCAGAGGCGCACGTCTCTCAGTCCGACTATCAGGGTGTTGAAACAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp TGTTGTTTCAACACCCTGATAGTCGGACTGAGAGACGTGCGCCTCTGCAAGTCTAACAAAGTCCGTTGGTaGCTGTGGCTTTGCTTCCGA +
Preference number: 4 (lower is better)
Translates to: CCFNTLIVGLRDVRLCKSNKVRW*LWLCFR
Trigger: TCGGAAGCAAAGCCACAGCCACCAACGGACTTTGTT...AGACTTGCAGAGGCGCACGTCTCTCAGTCCGACTATCAGGGTGTTGAAACAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp TCACCGCCTTCCTTCCTCTGCAAATTGTCCCTTCTACTCCCGTGTCTTATGGCTAACAAAGTCCGTTGGTaGCTGTGGCTTTGCTTCCGA +
Preference number: 4 (lower is better)
Translates to: SPPSFLCKLSLLLPCLMANKVRW*LWLCFR
Trigger: TCGGAAGCAAAGCCACAGCCACCAACGGACTTTGTT...AGCCATAAGACACGGGAGTAGAAGGGACAATTTGCAGAGGAAGGAAGGCGGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp GAAGATGATGGAGGGCTTTCCCCTTCGGGAATTGCATTAGCAGAAGGCAGTTGTCAGGCTTGCTTCCAGTaGATAGGAGTGTACCAGGCA +
Preference number: 4 (lower is better)
Translates to: EDDGGLSPSGIALAEGSCQACFQ*IGVYQA
Trigger: TGCCTGGTACACTCCTATCCACTGGAAGCAAGCCTG...ACAACTGCCTTCTGCTAATGCAATTCCCGAAGGGGAAAGCCCTCCATCATCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp GAAGATGATGGAGGGCTTTCCCCTTCGGGAATTGCATTAGCAGAAGGCAGTTGTTGGTTTGGGCTTGGTTaGCTGAGGCTTGAGCTGTGT +
Preference number: 4 (lower is better)
Translates to: EDDGGLSPSGIALAEGSCWFGLG*LRLELC
Trigger: ACACAGCTCAAGCCTCAGCCAACCAAGCCCAAACCA...ACAACTGCCTTCTGCTAATGCAATTCCCGAAGGGGAAAGCCCTCCATCATCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 72 bp TGCAAGTCTCTTCAGAGTGCCTGCATCACTGCCAGATaGCTGAAGAACTCCCACATGGACTGCACACACTGT +
Preference number: 4 (lower is better)
Translates to: CKSLQSACITAR*LKNSHMDCTHC
Trigger: ACAGTGTGTGCAGTCCATGTGGGAGTTCTTCAGCAATCTGGCAGTGATGCAGGCACTCTGAAGAGACTTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 72 bp GTAGGTTGTTTCTGTTCCCTTCTGGCTTCAGGTTTGTaGAGAGCGCCATGCTCCCTCCATCCATCTTTGCGA +
Preference number: 4 (lower is better)
Translates to: VGCFCSLLASGL*RAPCSLHPSLR
Trigger: TCGCAAAGATGGATGGAGGGAGCATGGCGCTCTCAACAAACCTGAAGCCAGAAGGGAACAGAAACAACCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 72 bp GGGTCCCTAGCTGAGGGACTCTGTTCTCAGTCCAGTTaGGTGACCACAGTGCTCACCTCTCTTATTTTCTCA +
Preference number: 4 (lower is better)
Translates to: GSLAEGLCSQSS*VTTVLTSLIFS
Trigger: TGAGAAAATAAGAGAGGTGAGCACTGTGGTCACCAAACTGGACTGAGAACAGAGTCCCTCAGCTAGGGACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR TCA 90 bp GACACACTCTGGAGACCAGGTGGGCAGCCCACTGCATCTTGCTTCTGGCTAACATCACAAAGAGGCCCTTaGTATTTACCTCAGCTATTT +
Preference number: 4 (lower is better)
Translates to: DTLWRPGGQPTASCFWLTSQRGP*YLPQLF
Trigger: AAATAGCTGAGGTAAATATCAAGGGCCTCTTTGTGA...TGTTAGCCAGAAGCAAGATGCAGTGGGCTGCCCACCTGGTCTCCAGAGTGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR TCA 90 bp AGGTGCCTGAAGCCTGGAATTTTAGCTGATGTGCCTGGACTTGCCCAGTTCTTATGGTTGGCTGAGGCTTaGGCTGTGTATCTAAACTGC +
Preference number: 4 (lower is better)
Translates to: RCLKPGILADVPGLAQFLWLAEA*AVYLNC
Trigger: GCAGTTTAGATACACAGCTCAAGCCTCAGCCAACCA...TAAGAACTGGGCAAGTCCAGGCACATCAGCTAAAATTCCAGGCTTCAGGCACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR GCA 90 bp GCTACTATGAGATCTGCTTCCTTCAGAACAATCTCCCATGGCAAGCTTAGTCATCACTGCTGCTTGCTGTaGAGGGGTCCTGGGATACCT +
Preference number: 4 (lower is better)
Translates to: ATMRSASFRTISHGKLSHHCCLL*RGPGIP
Trigger: AGGTATCCCAGGACCCCTGCACAGCAAGCAGCAGTG...ATGACTAAGCTTGCCATGGGAGATTGTTCTGAAGGAAGCAGATCTCATAGTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp TTAGATCTGTGTGAAATCTTTCTCCAAGAGATAAGTTTCCCCTCTGGCTGGTGCGCCTCCGTGGAACCATaGAGCTGGTGCTCTGCTTTC +
Preference number: 4 (lower is better)
Translates to: LDLCEIFLQEISFPSGWCASVEP*SWCSAF
Trigger: GAAAGCAGAGCACCAGCTCCATGGTTCCACGGAGGC...GCACCAGCCAGAGGGGAAACTTATCTCTTGGAGAAAGATTTCACACAGATCTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp GAAGATGATGGAGGGCTTTCCCCTTCGGGAATTGCATTAGCAGAAGGCAGTTGTCCAAACAAAGTCCGTTaGTGGCTGTGGCTTTGCTTC +
Preference number: 4 (lower is better)
Translates to: EDDGGLSPSGIALAEGSCPNKVR*WLWLCF
Trigger: GAAGCAAAGCCACAGCCACCAACGGACTTTGTTTGG...ACAACTGCCTTCTGCTAATGCAATTCCCGAAGGGGAAAGCCCTCCATCATCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp TCCCCTTCGGGAATTGCATTAGCAGAAGGCAGTTGTAGGTTGTTTCTGTTCCCTCAATGGCCTCACCATTaGGCTTGCACAAGATGGTCG +
Preference number: 4 (lower is better)
Translates to: SPSGIALAEGSCRLFLFPQWPHH*ACTRWS
Trigger: CGACCATCTTGTGCAAGCCCAATGGTGAGGCCATTG...AGGGAACAGAAACAACCTACAACTGCCTTCTGCTAATGCAATTCCCGAAGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp CTTCCTGTAGGAGCTGGAGAGTTGGCTCCCTGGGTTAGGTGCATACTGCTCTTGCTTTCTCCTCGTTTGTaGAAGAGACAGATGCTGTTA +
Preference number: 4 (lower is better)
Translates to: LPVGAGELAPWVRCILLLLSPRL*KRQMLL
Trigger: TAACAGCATCTGTCTCTTCCACAAACGAGGAGAAAG...CAAGAGCAGTATGCACCTAACCCAGGGAGCCAACTCTCCAGCTCCTACAGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp CTTCCTGTAGGAGCTGGAGAGTTGGCTCCCTGGGTTAGGTGCATACTGCTCTTGGGGCGTTTTCTGTATTaGTTCTTCTTTCTCCTCGTT +
Preference number: 4 (lower is better)
Translates to: LPVGAGELAPWVRCILLLGRFLY*FFFLLV
Trigger: AACGAGGAGAAAGAAGAACCAATACAGAAAACGCCC...CAAGAGCAGTATGCACCTAACCCAGGGAGCCAACTCTCCAGCTCCTACAGGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 72 bp TGCTCAGGACGTAACGGAAGTCTTCTGGATAGAAGGTaGTGTTCTTGGCAGAGCCTCTGGATTGCGACACAT +
Preference number: 4 (lower is better)
Translates to: CSGRNGSLLDRR*CSWQSLWIATH
Trigger: ATGTGTCGCAATCCAGAGGCTCTGCCAAGAACACAACCTTCTATCCAGAAGACTTCCGTTACGTCCTGAGCA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 72 bp GTTGTAGGTTGTTTCTGTTCCCTTCTGGCTTCAGGTTaGTTGAGAGCGCCATGCTCCCTCCATCCATCTTTG +
Preference number: 4 (lower is better)
Translates to: VVGCFCSLLASG*LRAPCSLHPSL
Trigger: CAAAGATGGATGGAGGGAGCATGGCGCTCTCAACAAACCTGAAGCCAGAAGGGAACAGAAACAACCTACAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR TCA 90 bp GAAGATGATGGAGGGCTTTCCCCTTCGGGAATTGCATTAGCAGAAGGCAGTTGTTTTCTCCGAGAGAACTaGGAATTCCTCCTTTTGGGC +
Preference number: 4 (lower is better)
Translates to: EDDGGLSPSGIALAEGSCFLREN*EFLLLG
Trigger: GCCCAAAAGGAGGAATTCTCAGTTCTCTCGGAGAAA...ACAACTGCCTTCTGCTAATGCAATTCCCGAAGGGGAAAGCCCTCCATCATCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 72 bp CAGAGCCTCTGGATTGCGACACATGACTCCTGCTCATaGGCTACTATGAGATCTGCTTCCTTCAGAACAATC +
Preference number: 4 (lower is better)
Translates to: QSLWIATHDSCS*ATMRSASFRTI
Trigger: GATTGTTCTGAAGGAAGCAGATCTCATAGTAGCCAATGAGCAGGAGTCATGTGTCGCAATCCAGAGGCTCTG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR GCA 90 bp CACTGTCATGCAGGAATTCCATTAGCCAAGACCCCGGGGCAGAAGTTGGGTTTGTGTGGAAGAGACAGATaGTGTTATCCATCCAAACAT +
Preference number: 4 (lower is better)
Translates to: HCHAGIPLAKTPGQKLGLCGRDR*CYPSKH
Trigger: ATGTTTGGATGGATAACAGCATCTGTCTCTTCCACA...CAAACCCAACTTCTGCCCCGGGGTCTTGGCTAATGGAATTCCTGCATGACAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp TGGAAAATTCTCATTTATCTGGCTGGGGTCTGTTGTTTCAACACCCTGATAGTCCTCTGGACGATAAGGTaGAGCTGTTCTGGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: WKILIYLAGVCCFNTLIVLWTIR*SCSGCW
Trigger: CCAGCACCCAGAACAGCTCCACCTTATCGTCCAGAG...GACTATCAGGGTGTTGAAACAACAGACCCCAGCCAGATAAATGAGAATTTTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTCTGGGGCTGCCTCCGTaGAACCATGGAGCTGGTGCT +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICLGLPP*NHGAGA
Trigger: AGCACCAGCTCCATGGTTCCACGGAGGCAGCCCCAG...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp GATCTGTGTGAAATCTTTCTCCAAGAGATAAGTTTCCCCTCTGGCTGGTGCCGGTTGCTTTCTTTTTCTTaGTCCCTGGGTCTGGTTTGG +
Preference number: 4 (lower is better)
Translates to: DLCEIFLQEISFPSGWCRLLSFS*SLGLVW
Trigger: CCAAACCAGACCCAGGGACCAAGAAAAAGAAAGCAA...CCGGCACCAGCCAGAGGGGAAACTTATCTCTTGGAGAAAGATTTCACACAGATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR TCA 90 bp ACCCCGGGGCAGAAGTTGGGTTTGCTTGTGTTTGTCTCAATAATTGACAATCTACATTTCTTGGGAAAATaGGCGGGACAACGGGATGAG +
Preference number: 4 (lower is better)
Translates to: TPGQKLGLLVFVSIIDNLHFLGK*AGQRDE
Trigger: CTCATCCCGTTGTCCCGCTCATTTTCCCAAGAAATG...TAGATTGTCAATTATTGAGACAAACACAAGCAAACCCAACTTCTGCCCCGGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR GCA 90 bp ACCCCGGGGCAGAAGTTGGGTTTGCTTGTGTTTGTCTCAATAATTGACAATCTAAACTTCTCCCAGGCTTaGTTCCAGTGGATAGGAGTG +
Preference number: 4 (lower is better)
Translates to: TPGQKLGLLVFVSIIDNLNFSQA*FQWIGV
Trigger: CACTCCTATCCACTGGAAGCAAGCCTGGGAGAAGTT...TAGATTGTCAATTATTGAGACAAACACAAGCAAACCCAACTTCTGCCCCGGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATACTCACGTTCTCGGCTTaGGGTGTGTGGGCGGTGAGC +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGILTFSA*GVWAVS
Trigger: GCTCACCGCCCACACACCCCAAGCCGAGAACGTGAG...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp AGGGGATTCTGGGGTAGGTGGCCTTTATCTTACTCCATCTCTAAGGGCATTCCAGGGCGTTTTCTGTATTaGTTCTTCTTTCTCCTCGTT +
Preference number: 4 (lower is better)
Translates to: RGFWGRWPLSYSISKGIPGRFLY*FFFLLV
Trigger: AACGAGGAGAAAGAAGAACCAATACAGAAAACGCCC...TGGAATGCCCTTAGAGATGGAGTAAGATAAAGGCCACCTACCCCAGAATCCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp TCTTTGCGATCTAAGCACTTCAGGACTGTCACACTCTTTGCTCTTTTGTCCAACCTTTTTCTTGGTCCCTaGGTCTGGTTTGGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: SLRSKHFRTVTLFALLSNLFLGP*VWFGLG
Trigger: ACCAAGCCCAAACCAGACCCAGGGACCAAGAAAAAG...GTTGGACAAAAGAGCAAAGAGTGTGACAGTCCTGAAGTGCTTAGATCGCAAAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR GCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGAACCATGGAGCTGGTaGTCTGCTTTCCCAGGCTGC +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICEPWSW*SAFPGC
Trigger: GCAGCCTGGGAAAGCAGAGCACCAGCTCCATGGTTC...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR GCA 90 bp GAAGATGATGGAGGGCTTTCCCCTTCGGGAATTGCATTAGCAGAAGGCAGTTGTTGTGGAAGAGACAGATaGTGTTATCCATCCAAACAT +
Preference number: 4 (lower is better)
Translates to: EDDGGLSPSGIALAEGSCCGRDR*CYPSKH
Trigger: ATGTTTGGATGGATAACAGCATCTGTCTCTTCCACA...ACAACTGCCTTCTGCTAATGCAATTCCCGAAGGGGAAAGCCCTCCATCATCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGTCCGTTGGTGGCTGTaGCTTTGCTTCCGAAGCTGC +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICVRWWL*LCFRSC
Trigger: GCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGAC...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp GCCTTCCTTCCTCTGCAAATTGTCCCTTCTACTCCCGTGTCTTATGGCTTGTTTATCCATCCAAACATGTaGTTTCTCATTGATGGGACC +
Preference number: 4 (lower is better)
Translates to: AFLPLQIVPSTPVSYGLFIHPNM*FLIDGT
Trigger: GGTCCCATCAATGAGAAACCACATGTTTGGATGGAT...AAACAAGCCATAAGACACGGGAGTAGAAGGGACAATTTGCAGAGGAAGGAAGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp TCCCCTTCGGGAATTGCATTAGCAGAAGGCAGTTGTAGGTTGTTTCTGTTCCCTCTTTCTCCTCGTTTGTaGAAGAGACAGATGCTGTTA +
Preference number: 4 (lower is better)
Translates to: SPSGIALAEGSCRLFLFPLSPRL*KRQMLL
Trigger: TAACAGCATCTGTCTCTTCCACAAACGAGGAGAAAG...AGGGAACAGAAACAACCTACAACTGCCTTCTGCTAATGCAATTCCCGAAGGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGATGTGGAGAAGTGTTaGGATTGCGGCACCAGGGGC +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICDVEKC*DCGTRG
Trigger: GCCCCTGGTGCCGCAATCCCAACACTTCTCCACATC...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp TTGACAATCTATTGGGCTAGCAACACTGAAAGCAAGACCTGGATTCTTGCAGTACTTTTTCTTGGTCCCTaGGTCTGGTTTGGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: LTIYWASNTESKTWILAVLFLGP*VWFGLG
Trigger: ACCAAGCCCAAACCAGACCCAGGGACCAAGAAAAAG...TACTGCAAGAATCCAGGTCTTGCTTTCAGTGTTGCTAGCCCAATAGATTGTCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CCA 90 bp AGCGGTTCTCCTGTGGTAGCTACTGGATACTCTTGGCTCAACTTTTTCATCCTTTTGCTTTCTTTTTCTTaGTCCCTGGGTCTGGTTTGG +
Preference number: 4 (lower is better)
Translates to: SGSPVVATGYSWLNFFILLLSFS*SLGLVW
Trigger: CCAAACCAGACCCAGGGACCAAGAAAAAGAAAGCAA...AAGGATGAAAAAGTTGAGCCAAGAGTATCCAGTAGCTACCACAGGAGAACCGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 72 bp GCAGGAATTCCATTAGCCAAGACCCCGGGGCAGAAGTaGGGTTTGCTTGTGTTTGTCTCAATAATTGACAAT +
Preference number: 4 (lower is better)
Translates to: AGIPLAKTPGQK*GLLVFVSIIDN
Trigger: ATTGTCAATTATTGAGACAAACACAAGCAAACCCAACTTCTGCCCCGGGGTCTTGGCTAATGGAATTCCTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 72 bp AGAGATAAGTTTCCCCTCTGGCTGGTGCCGGTTCCATaGACTAGCATGAGCTTCCTGGAAAATTCTCATTTA +
Preference number: 4 (lower is better)
Translates to: RDKFPLWLVPVP*TSMSFLENSHL
Trigger: TAAATGAGAATTTTCCAGGAAGCTCATGCTAGTCAATGGAACCGGCACCAGCCAGAGGGGAAACTTATCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 72 bp AACAAGCGGTTCTCCTGTGGTAGCTACTGGATACTCTaGGCTCAACTTTTTCATCCTTCATCAAGGAGACGT +
Preference number: 4 (lower is better)
Translates to: NKRFSCGSYWIL*AQLFHPSSRRR
Trigger: ACGTCTCCTTGATGAAGGATGAAAAAGTTGAGCCAAGAGTATCCAGTAGCTACCACAGGAGAACCGCTTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 72 bp CAGGTTGGCCTTTGGGCAAGCTTGTGCTTCATTCTCTaGATTAATGATTTATGTGAGAGGGTTCAGCCCACT +
Preference number: 4 (lower is better)
Translates to: QVGLWASLCFIL*INDLCERVQPT
Trigger: AGTGGGCTGAACCCTCTCACATAAATCATTAATCAAGAGAATGAAGCACAAGCTTGCCCAAAGGCCAACCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR TCA 90 bp CCACTTCTTCAGTCATCTATGATCACTGTGACCGGTGTTTCTGAGTTAAGACAGAATGTCCGAGTCATGTaGGTCAATCAGAGAGCTGTA +
Preference number: 4 (lower is better)
Translates to: PLLQSSMITVTGVSELRQNVRVM*VNQRAV
Trigger: TACAGCTCTCTGATTGACTCACATGACTCGGACATT...CTGTCTTAACTCAGAAACACCGGTCACAGTGATCATAGATGACTGAAGAAGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR GCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTATGGAGCTGGTGCTCTaGTTTCCCAGGCTGCTGTCT +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICMELVL*FPRLLS
Trigger: AGACAGCAGCCTGGGAAAGCAGAGCACCAGCTCCAT...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTCTCTGGACGATAAGGTaGAGCTGTTCTGGGTGCTGG +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICLWTIR*SCSGCW
Trigger: CCAGCACCCAGAACAGCTCCACCTTATCGTCCAGAG...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTAGGCTGCTGTCTTTGTaGGAGCAGCTCAGGATGGTG +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICRLLSL*EQLRMV
Trigger: CACCATCCTGAGCTGCTCCCACAAAGACAGCAGCCT...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR GCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGAGAAGTGTTGGGATTaGGGCACCAGGGGCTCTTAT +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICEKCWD*GTRGSY
Trigger: ATAAGAGCCCCTGGTGCCGCAATCCCAACACTTCTC...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATAGAGTGTACCAGGCAATaGCCTCACCATTGGGCTTGC +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGIECTRQ*PHHWAC
Trigger: GCAAGCCCAATGGTGAGGCCATTGCCTGGTACACTC...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
3UTR CAA 72 bp ATTCCATTAGCCAAGACCCCGGGGCAGAAGTTGGGTTaGCTTGTGTTTGTCTCAATAATTGACAATCTATTG +
Preference number: 4 (lower is better)
Translates to: IPLAKTPGQKLG*LVFVSIIDNLL
Trigger: CAATAGATTGTCAATTATTGAGACAAACACAAGCAAACCCAACTTCTGCCCCGGGGTCTTGGCTAATGGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR TCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTCATTTCTTGGGAAAATaGGCGGGACAACGGGATGAG +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICHFLGK*AGQRDE
Trigger: CTCATCCCGTTGTCCCGCTCATTTTCCCAAGAAATG...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR TCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTTGGTTGGCTGAGGCTTaGGCTGTGTATCTAAACTGC +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICWLAEA*AVYLNC
Trigger: GCAGTTTAGATACACAGCTCAAGCCTCAGCCAACCA...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATACAATGGCCTCACCATTaGGCTTGCACAAGATGGTCG +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGIQWPHH*ACTRWS
Trigger: CGACCATCTTGTGCAAGCCCAATGGTGAGGCCATTG...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATACAGGCTTGCTTCCAGTaGATAGGAGTGTACCAGGCA +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGIQACFQ*IGVYQA
Trigger: TGCCTGGTACACTCCTATCCACTGGAAGCAAGCCTG...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATATGGTTTGGGCTTGGTTaGCTGAGGCTTGAGCTGTGT +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGIWFGLG*LRLELC
Trigger: ACACAGCTCAAGCCTCAGCCAACCAAGCCCAAACCA...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
3UTR CAA 72 bp ATCAAGGAGACGTCTCTTTGCAACCGATGGAGACCTTaGCAGAAAACCACACTTATCAAATACAGGAAACAA +
Preference number: 4 (lower is better)
Translates to: IKETSLCNRWRP*QKTTLIKYRKQ
Trigger: TTGTTTCCTGTATTTGATAAGTGTGGTTTTCTGCAAAGGTCTCCATCGGTTGCAAAGAGACGTCTCCTTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
3UTR CAA 72 bp AAGATATGTCCTCACCAGGTTGGCCTTTGGGCAAGCTaGTGCTTCATTCTCTTGATTAATGATTTATGTGAG +
Preference number: 4 (lower is better)
Translates to: KICPHQVGLWAS*CFILLINDLCE
Trigger: CTCACATAAATCATTAATCAAGAGAATGAAGCACAAGCTTGCCCAAAGGCCAACCTGGTGAGGACATATCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR TCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGAGCGTGGTGGAGTCTaGATCCATTATCTTTGGGAA +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICERGGV*IHYLWE
Trigger: TTCCCAAAGATAATGGATTCAGACTCCACCACGCTC...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATAAACAAAGTCCGTTGGTaGCTGTGGCTTTGCTTCCGA +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGINKVRW*LWLCFR
Trigger: TCGGAAGCAAAGCCACAGCCACCAACGGACTTTGTT...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATACCAAACAAAGTCCGTTaGTGGCTGTGGCTTTGCTTC +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGIPNKVR*WLWLCF
Trigger: GAAGCAAAGCCACAGCCACCAACGGACTTTGTTTGG...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATACTTTTTCTTGGTCCCTaGGTCTGGTTTGGGCTTGGT +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGILFLGP*VWFGLG
Trigger: ACCAAGCCCAAACCAGACCCAGGGACCAAGAAAAAG...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR TCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATATTTCATTGGAGGAGTTaGCAAGCCTCACAAAGAGGC +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGIFHWRS*QASQRG
Trigger: GCCTCTTTGTGAGGCTTGTCAACTCCTCCAATGAAA...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
3UTR CAA 72 bp GGGCTTGAGTCTCATCCTGTACATTGGTCTTATGAGTaGTTAGATCTGTGTGAAATCTTTCTCCAAGAGATA +
Preference number: 4 (lower is better)
Translates to: GLESHPVHWSYE*LDLCEIFLQEI
Trigger: TATCTCTTGGAGAAAGATTTCACACAGATCTAACAACTCATAAGACCAATGTACAGGATGAGACTCAAGCCC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
3UTR CAA 72 bp AAAACCACACTTATCAAATACAGGAAACAAGAGATCTaGTGGAGCCCAGTCGAAACAGGTATACCAGCAATA +
Preference number: 4 (lower is better)
Translates to: KTTLIKYRKQEI*WSPVETGIPAI
Trigger: TATTGCTGGTATACCTGTTTCGACTGGGCTCCACAAGATCTCTTGTTTCCTGTATTTGATAAGTGTGGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR TCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATAAATGTCCGAGTCATGTaGGTCAATCAGAGAGCTGTA +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGINVRVM*VNQRAV
Trigger: TACAGCTCTCTGATTGACTCACATGACTCGGACATT...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTATCCATCCAAACATGTaGTTTCTCATTGATGGGACC +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICIHPNM*FLIDGT
Trigger: GGTCCCATCAATGAGAAACCACATGTTTGGATGGAT...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTCTTTCTCCTCGTTTGTaGAAGAGACAGATGCTGTTA +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICLSPRL*KRQMLL
Trigger: TAACAGCATCTGTCTCTTCCACAAACGAGGAGAAAG...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATATTGCTTTCTTTTTCTTaGTCCCTGGGTCTGGTTTGG +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGILLSFS*SLGLVW
Trigger: CCAAACCAGACCCAGGGACCAAGAAAAAGAAAGCAA...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR TCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTTCACAAAGAGGCCCTTaGTATTTACCTCAGCTATTT +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICSQRGP*YLPQLF
Trigger: AAATAGCTGAGGTAAATATCAAGGGCCTCTTTGTGA...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR GCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTTGTGGAAGAGACAGATaGTGTTATCCATCCAAACAT +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICCGRDR*CYPSKH
Trigger: ATGTTTGGATGGATAACAGCATCTGTCTCTTCCACA...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATAGGGCGTTTTCTGTATTaGTTCTTCTTTCTCCTCGTT +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGIGRFLY*FFFLLV
Trigger: AACGAGGAGAAAGAAGAACCAATACAGAAAACGCCC...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CCA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTATCTTTGGGAAGAAGTaGACTGAAGAATGCTGTTTC +
Preference number: 4 (lower is better)
Translates to: RTASVIKRDPQKFIAIICIFGKK*TEECCF
Trigger: GAAACAGCATTCTTCAGTCCACTTCTTCCCAAAGAT...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR GCA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATATGTACTTTACTGTCTTaGTTATTGATGCTGGTGACA +
Preference number: 4 (lower is better)
Translates to: ASVIKRDPQKFIAIICGICTLLS*LLMLVT
Trigger: TGTCACCAGCATCAATAAGCAAGACAGTAAAGTACA...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp CCGGAGCTCTGCTCCAAGCCCGGTTCCCAGCTCCCAGGTCAGCCTCTCGCGTTTGCTCACGTTCTCGGCTaGGGGTGTGTGGGCGGTGAG +
Preference number: 5 (lower is better)
Translates to: PELCSKPGSQLPGQPLAFAHVLG*GCVGGE
Trigger: CTCACCGCCCACACACCCCAAGCCGAGAACGTGAGC...AAACGCGAGAGGCTGACCTGGGAGCTGGGAACCGGGCTTGGAGCAGAGCTCCGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CAA 90 bp ACCGGAGCTCTGCTCCAAGCCCGGTTCCCAGCTCCCAGGTCAGCCTCTCGCGTTGGAGAAGTGTTGGGATaGCGGCACCAGGGGCTCTTA +
Preference number: 5 (lower is better)
Translates to: TGALLQARFPAPRSASRVGEVLG*RHQGLL
Trigger: TAAGAGCCCCTGGTGCCGCAATCCCAACACTTCTCC...AACGCGAGAGGCTGACCTGGGAGCTGGGAACCGGGCTTGGAGCAGAGCTCCGGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS GCA 90 bp GAGCTCGACTGGGGCTGCCTCCGTGGAACCATGGAGCTGGTGCTCTaGTTTCCCAGGCTGCTGTCTTTGTGGGAGCAGCTCAGGATGGTG +
Preference number: 5 (lower is better)
Translates to: ELDWGCLRGTMELVL*FPRLLSLWEQLRMV
Trigger: CACCATCCTGAGCTGCTCCCACAAAGACAGCAGCCTGGGAAAGCAGAGCACCAGCTCCATGGTTCCACGGAGGCAGCCCCAGTCGAGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS CCA 90 bp ACGTATCCACGTCAGAGCTCGACTGGGGCTGCCTCCGTGGAACCATaGAGCTGGTGCTCTGCTTTCCCAGGCTGCTGTCTTTGTGGGAGC +
Preference number: 5 (lower is better)
Translates to: TYPRQSSTGAASVEP*SWCSAFPGCCLCGS
Trigger: GCTCCCACAAAGACAGCAGCCTGGGAAAGCAGAGCACCAGCTCCATGGTTCCACGGAGGCAGCCCCAGTCGAGCTCTGACGTGGATACGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS GCA 90 bp CTTGCTCTGTTCCTCCCAAACAAAGTCCGTTGGTGGCTGTGGCTTTaGTTCCGAAGCTGCTGCCCACACTGTCACCGTGGAGTTGGCCTG +
Preference number: 5 (lower is better)
Translates to: LALFLPNKVRWWLWL*FRSCCPHCHRGVGL
Trigger: CAGGCCAACTCCACGGTGACAGTGTGGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGACTTTGTTTGGGAGGAACAGAGCAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS-3UTR CAA 90 bp CCGGAGCTCTGCTCCAAGCCCGGTTCCCAGCTCCCAGGTCAGCCTCTCGCGTTTTTTGCTTTCTTTTTCTaGGTCCCTGGGTCTGGTTTG +
Preference number: 5 (lower is better)
Translates to: PELCSKPGSQLPGQPLAFFAFFF*VPGSGL
Trigger: CAAACCAGACCCAGGGACCAAGAAAAAGAAAGCAAA...AAACGCGAGAGGCTGACCTGGGAGCTGGGAACCGGGCTTGGAGCAGAGCTCCGG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CAA 90 bp AGTCTGACGTCATCACACATGCAGCACGCATGCTCCCCTCGTATCCACGCCCCCTTCCTCCTTTTGGGCTaGACACTGCTGCTTGCTGTG +
Preference number: 5 (lower is better)
Translates to: SLTSSHMQHACSPRIHAPFLLLG*TLLLAV
Trigger: CACAGCAAGCAGCAGTGTCAAGCCCAAAAGGAGGAA...GGGGGCGTGGATACGAGGGGAGCATGCGTGCTGCATGTGTGATGACGTCAGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS GCA 90 bp TTTGCTTCCGAAGCTGCTGCCCACACTGTCACCGTGGAGTTGGCCTaGAGTGTGATGTTGTCGGGGAACTGGTACAAGGAGACTGCGTGT +
Preference number: 5 (lower is better)
Translates to: FASEAAAHTVTVELA*SVMLSGNWYKETAC
Trigger: ACACGCAGTCTCCTTGTACCAGTTCCCCGACAACATCACACTGCAGGCCAACTCCACGGTGACAGTGTGGGCAGCAGCTTCGGAAGCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CCA 90 bp TCGGAACTTGCTCTGTTCCTCCCAAACAAAGTCCGTTGGTGGCTGTaGCTTTGCTTCCGAAGCTGCTGCCCACACTGTCACCGTGGAGTT +
Preference number: 5 (lower is better)
Translates to: SELALFLPNKVRWWL*LCFRSCCPHCHRGV
Trigger: AACTCCACGGTGACAGTGTGGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGACTTTGTTTGGGAGGAACAGAGCAAGTTCCGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CCA 90 bp ACTGGATCGGAACTTGCTCTGTTCCTCCCAAACAAAGTCCGTTGGTaGCTGTGGCTTTGCTTCCGAAGCTGCTGCCCACACTGTCACCGT +
Preference number: 5 (lower is better)
Translates to: TGSELALFLPNKVRW*LWLCFRSCCPHCHR
Trigger: ACGGTGACAGTGTGGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGACTTTGTTTGGGAGGAACAGAGCAAGTTCCGATCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS-3UTR CAA 90 bp GAGCTCTGCTCCAAGCCCGGTTCCCAGCTCCCAGGTCAGCCTCTCGCGTTTAGATTTTCATTGGAGGAGTaGACAAGCCTCACAAAGAGG +
Preference number: 5 (lower is better)
Translates to: ELCSKPGSQLPGQPLAFRFSLEE*TSLTKR
Trigger: CCTCTTTGTGAGGCTTGTCAACTCCTCCAATGAAAA...TCTAAACGCGAGAGGCTGACCTGGGAGCTGGGAACCGGGCTTGGAGCAGAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CAA 90 bp CTCTGCTCCAAGCCCGGTTCCCAGCTCCCAGGTCAGCCTCTCGCGTTTAGATCTGTGTCCATTCACGTTTaGCTGAAGAATGTGGTTTCC +
Preference number: 5 (lower is better)
Translates to: LCSKPGSQLPGQPLAFRSVSIHV*LKNVVS
Trigger: GGAAACCACATTCTTCAGCAAAACGTGAATGGACAC...AGATCTAAACGCGAGAGGCTGACCTGGGAGCTGGGAACCGGGCTTGGAGCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CAA 90 bp AGGTGCCTGAAGCCTGGAATTTTAGCTGATGTGCCTGGACTTGCCCAGTTCTTATTGGTGGCTGTGGCTTaGCTTCCGAAGCTGCTGCCC +
Preference number: 5 (lower is better)
Translates to: RCLKPGILADVPGLAQFLLVAVA*LPKLLP
Trigger: GGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAA...TAAGAACTGGGCAAGTCCAGGCACATCAGCTAAAATTCCAGGCTTCAGGCACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS TCA 90 bp CCAGCTGTCCTCTGGACGATAAGGTGGAGCTGTTCTGGGTGCTGGTaGTCTGGTAGAAGCCAATTGGCATTTCTTGGGAAAATGAGCGGG +
Preference number: 5 (lower is better)
Translates to: PAVLWTIRWSCSGCW*SGRSQLAFLGKMSG
Trigger: CCCGCTCATTTTCCCAAGAAATGCCAATTGGCTTCTACCAGATCACCAGCACCCAGAACAGCTCCACCTTATCGTCCAGAGGACAGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp TCTCATTTATCTGGCTGGGGTCTGTTGTTTCAACACCCTGATAGTCGGACTGAGTTGGTGGCTGTGGCTTaGCTTCCGAAGCTGCTGCCC +
Preference number: 5 (lower is better)
Translates to: SHLSGWGLLFQHPDSRTELVAVA*LPKLLP
Trigger: GGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAA...CTCAGTCCGACTATCAGGGTGTTGAAACAACAGACCCCAGCCAGATAAATGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CAA 90 bp ATTTATGTGAGAGGGTTCAGCCCACTGTGGGTCCAGCAATCCCTGGGAGGTTGCACATGTGGTTTCTCATaGATGGGACCACCACTGAGC +
Preference number: 5 (lower is better)
Translates to: IYVRGFSPLWVQQSLGGCTCGFS*MGPPLS
Trigger: GCTCAGTGGTGGTCCCATCAATGAGAAACCACATGT...GCAACCTCCCAGGGATTGCTGGACCCACAGTGGGCTGAACCCTCTCACATAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CAA 90 bp AGGTGCCTGAAGCCTGGAATTTTAGCTGATGTGCCTGGACTTGCCCAGTTCTTAGGAGAAGTGTTGGGATaGCGGCACCAGGGGCTCTTA +
Preference number: 5 (lower is better)
Translates to: RCLKPGILADVPGLAQFLGEVLG*RHQGLL
Trigger: TAAGAGCCCCTGGTGCCGCAATCCCAACACTTCTCC...TAAGAACTGGGCAAGTCCAGGCACATCAGCTAAAATTCCAGGCTTCAGGCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS CCA 90 bp ACGGATGTGGAGAAGTGTTGGGATTGCGGCACCAGGGGCTCTTATTaGGTAAGACAGTTGGCGGGATTTCCTTTTCTCTGTAGAGGACAG +
Preference number: 5 (lower is better)
Translates to: TDVEKCWDCGTRGSY*VRQLAGFPFLCRGQ
Trigger: CTGTCCTCTACAGAGAAAAGGAAATCCCGCCAACTGTCTTACCCAATAAGAGCCCCTGGTGCCGCAATCCCAACACTTCTCCACATCCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CCA 90 bp AGTCATGTGAGTCAATCAGAGAGCTGTACGGATGTGGAGAAGTGTTaGGATTGCGGCACCAGGGGCTCTTATTGGGTAAGACAGTTGGCG +
Preference number: 5 (lower is better)
Translates to: SHVSQSESCTDVEKC*DCGTRGSYWVRQLA
Trigger: CGCCAACTGTCTTACCCAATAAGAGCCCCTGGTGCCGCAATCCCAACACTTCTCCACATCCGTACAGCTCTCTGATTGACTCACATGACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS-3UTR CAA 90 bp TGTTGTTTCAACACCCTGATAGTCGGACTGAGAGACGTGCGCCTCTGCAAGTCTCCCAAACAAAGTCCGTaGGTGGCTGTGGCTTTGCTT +
Preference number: 5 (lower is better)
Translates to: CCFNTLIVGLRDVRLCKSPKQSP*VAVALL
Trigger: AAGCAAAGCCACAGCCACCAACGGACTTTGTTTGGG...AGACTTGCAGAGGCGCACGTCTCTCAGTCCGACTATCAGGGTGTTGAAACAACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CAA 90 bp GCGGCATTCACTGCTGTGGAGGGACTAGAAGTTTCCTGGAAGCTGCTTGTCTTTCCCAAACAAAGTCCGTaGGTGGCTGTGGCTTTGCTT +
Preference number: 5 (lower is better)
Translates to: AAFTAVEGLEVSWKLLVFPKQSP*VAVALL
Trigger: AAGCAAAGCCACAGCCACCAACGGACTTTGTTTGGG...AAAGACAAGCAGCTTCCAGGAAACTTCTAGTCCCTCCACAGCAGTGAATGCCGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS CCA 90 bp TCGAATTCAATGTCAGTCTCTAACTTCTCCCAGGCTTGCTTCCAGTaGATAGGAGTGTACCAGGCAATGGCCTCACCATTGGGCTTGCAC +
Preference number: 5 (lower is better)
Translates to: SNSMSVSNFSQACFQ*IGVYQAMASPLGLH
Trigger: GTGCAAGCCCAATGGTGAGGCCATTGCCTGGTACACTCCTATCCACTGGAAGCAAGCCTGGGAGAAGTTAGAGACTGACATTGAATTCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS-3UTR CAA 90 bp GAGCTAGTCCTTTGGGATATGAATGCTTCCTGTAGGAGCTGGAGAGTTGGCTCCACATGTGGTTTCTCATaGATGGGACCACCACTGAGC +
Preference number: 5 (lower is better)
Translates to: ELVLWDMNASCRSWRVGSTCGFS*MGPPLS
Trigger: GCTCAGTGGTGGTCCCATCAATGAGAAACCACATGT...GGAGCCAACTCTCCAGCTCCTACAGGAAGCATTCATATCCCAAAGGACTAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS TCA 90 bp GCTTTCTTTTTCTTGGTCCCTGGGTCTGGTTTGGGCTTGGTTGGCTaGGGCTTGAGCTGTGTATCTAAACTGCTTTCGGAAATGTCCGAG +
Preference number: 5 (lower is better)
Translates to: AFFFLVPGSGLGLVG*GLSCVSKLLSEMSE
Trigger: CTCGGACATTTCCGAAAGCAGTTTAGATACACAGCTCAAGCCTCAGCCAACCAAGCCCAAACCAGACCCAGGGACCAAGAAAAAGAAAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS GCA 90 bp GTTGGCCTGCAGTGTGATGTTGTCGGGGAACTGGTACAAGGAGACTaGGTGTCCATTCACGTTTTGCTGAAGAATGTGGTTTCCAATCTC +
Preference number: 5 (lower is better)
Translates to: VGLQCDVVGELVQGD*VSIHVLLKNVVSNL
Trigger: GAGATTGGAAACCACATTCTTCAGCAAAACGTGAATGGACACGCAGTCTCCTTGTACCAGTTCCCCGACAACATCACACTGCAGGCCAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS-3UTR CAA 90 bp TGGAAAATTCTCATTTATCTGGCTGGGGTCTGTTGTTTCAACACCCTGATAGTCCCCAGGCTGCTGTCTTaGTGGGAGCAGCTCAGGATG +
Preference number: 5 (lower is better)
Translates to: WKILIYLAGVCCFNTLIVPRLLS*WEQLRM
Trigger: CATCCTGAGCTGCTCCCACAAAGACAGCAGCCTGGG...GACTATCAGGGTGTTGAAACAACAGACCCCAGCCAGATAAATGAGAATTTTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CAA 90 bp ATGATTTATGTGAGAGGGTTCAGCCCACTGTGGGTCCAGCAATCCCTGGGAGGTTTTTCATTGGAGGAGTaGACAAGCCTCACAAAGAGG +
Preference number: 5 (lower is better)
Translates to: MIYVRGFSPLWVQQSLGGFSLEE*TSLTKR
Trigger: CCTCTTTGTGAGGCTTGTCAACTCCTCCAATGAAAA...ACCTCCCAGGGATTGCTGGACCCACAGTGGGCTGAACCCTCTCACATAAATCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CAA 90 bp GGTCTGTTGTTTCAACACCCTGATAGTCGGACTGAGAGACGTGCGCCTCTGCAATCTACTTCCTTTTCATaGGAGGAGTTGACAAGCCTC +
Preference number: 5 (lower is better)
Translates to: GLLFQHPDSRTERRAPLQSTSFS*EELTSL
Trigger: GAGGCTTGTCAACTCCTCCAATGAAAAGGAAGTAGA...TTGCAGAGGCGCACGTCTCTCAGTCCGACTATCAGGGTGTTGAAACAACAGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CAA 90 bp ACTTCAGGACTGTCACACTCTTTGCTCTTTTGTCCAACCTCCGGTCCCAGCTGCGTGTCCATTCACGTTTaGCTGAAGAATGTGGTTTCC +
Preference number: 5 (lower is better)
Translates to: TSGLSHSLLFCPTSGPSCVSIHV*LKNVVS
Trigger: GGAAACCACATTCTTCAGCAAAACGTGAATGGACAC...GCAGCTGGGACCGGAGGTTGGACAAAAGAGCAAAGAGTGTGACAGTCCTGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CAA 90 bp TATCTAACTAGTCCTGGTCAAGATGTGGCCCTGCCCAGTATGGACCCAGCCTTGAGGGCGTTTTCTGTATaGGTTCTTCTTTCTCCTCGT +
Preference number: 5 (lower is better)
Translates to: YLTSPGQDVALPSMDPALRAFSV*VLLSPR
Trigger: ACGAGGAGAAAGAAGAACCAATACAGAAAACGCCCT...CAAGGCTGGGTCCATACTGGGCAGGGCCACATCTTGACCAGGACTAGTTAGATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS GCA 90 bp GAGCATCTTTCGAATTCAATGTCAGTCTCTAACTTCTCCCAGGCTTaGTTCCAGTGGATAGGAGTGTACCAGGCAATGGCCTCACCATTG +
Preference number: 5 (lower is better)
Translates to: EHLSNSMSVSNFSQA*FQWIGVYQAMASPL
Trigger: CAATGGTGAGGCCATTGCCTGGTACACTCCTATCCACTGGAAGCAAGCCTGGGAGAAGTTAGAGACTGACATTGAATTCGAAAGATGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS-3UTR CAA 90 bp CACTGTCATGCAGGAATTCCATTAGCCAAGACCCCGGGGCAGAAGTTGGGTTTGCTCACAAAGAGGCCCTaGATATTTACCTCAGCTATT +
Preference number: 5 (lower is better)
Translates to: HCHAGIPLAKTPGQKLGLLTKRP*IFTSAI
Trigger: AATAGCTGAGGTAAATATCAAGGGCCTCTTTGTGAG...CAAACCCAACTTCTGCCCCGGGGTCTTGGCTAATGGAATTCCTGCATGACAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS TCA 90 bp AGAAGCCAATTGGCATTTCTTGGGAAAATGAGCGGGACAACGGGATaGGCGTGGTGGAGTCTGAATCCATTATCTTTGGGAAGAAGTGGA +
Preference number: 5 (lower is better)
Translates to: RSQLAFLGKMSGTTG*AWWSLNPLSLGRSG
Trigger: TCCACTTCTTCCCAAAGATAATGGATTCAGACTCCACCACGCTCATCCCGTTGTCCCGCTCATTTTCCCAAGAAATGCCAATTGGCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp CCTCTGCAAGTCTCTTCAGAGTGCCTGCATCACTGCCAGATTGCTGAAGAACTCTCTGGTAGAAGCCAATaGGCATTTCTTGGGAAAATG +
Preference number: 5 (lower is better)
Translates to: PLQVSSECLHHCQIAEELSGRSQ*AFLGKM
Trigger: CATTTTCCCAAGAAATGCCAATTGGCTTCTACCAGA...GAGTTCTTCAGCAATCTGGCAGTGATGCAGGCACTCTGAAGAGACTTGCAGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111706.8
CDS-3UTR CAA 90 bp GCCTTCCTTCCTCTGCAAATTGTCCCTTCTACTCCCGTGTCTTATGGCTTGTTTAGGGCGTTTTCTGTATaGGTTCTTCTTTCTCCTCGT +
Preference number: 5 (lower is better)
Translates to: AFLPLQIVPSTPVSYGLFRAFSV*VLLSPR
Trigger: ACGAGGAGAAAGAAGAACCAATACAGAAAACGCCCT...AAACAAGCCATAAGACACGGGAGTAGAAGGGACAATTTGCAGAGGAAGGAAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CAA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATACCCAGGCTGCTGTCTTaGTGGGAGCAGCTCAGGATG +
Preference number: 5 (lower is better)
Translates to: ASVIKRDPQKFIAIICGIPRLLS*WEQLRM
Trigger: CATCCTGAGCTGCTCCCACAAAGACAGCAGCCTGGG...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATATTGGTGGCTGTGGCTTaGCTTCCGAAGCTGCTGCCC +
Preference number: 5 (lower is better)
Translates to: ASVIKRDPQKFIAIICGILVAVA*LPKLLP
Trigger: GGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAA...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS CCA 90 bp CTTGGGAGGGCGTTTTCTGTATTGGTTCTTCTTTCTCCTCGTTTGTaGAAGAGACAGATGCTGTTATCCATCCAAACATGTGGTTTCTCA +
Preference number: 5 (lower is better)
Translates to: LGRAFSVLVLLSPRL*KRQMLLSIQTCGFS
Trigger: TGAGAAACCACATGTTTGGATGGATAACAGCATCTGTCTCTTCCACAAACGAGGAGAAAGAAGAACCAATACAGAAAACGCCCTCCCAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CCA 90 bp GGGATGAGCGTGGTGGAGTCTGAATCCATTATCTTTGGGAAGAAGTaGACTGAAGAATGCTGTTTCGATGGAGTGATGGTTCCAATTTTT +
Preference number: 5 (lower is better)
Translates to: GMSVVESESIIFGKK*TEECCFDGVMVPIF
Trigger: AAAAATTGGAACCATCACTCCATCGAAACAGCATTCTTCAGTCCACTTCTTCCCAAAGATAATGGATTCAGACTCCACCACGCTCATCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111708.9
ENSMUST00000149666.2
CDS-3UTR CAA 90 bp GTCCCTTCTACTCCCGTGTCTTATGGCTTGTTTTCTAATGCATGCTGGATATGGCTCACAAAGAGGCCCTaGATATTTACCTCAGCTATT +
Preference number: 5 (lower is better)
Translates to: VPSTPVSYGLFSNACWIWLTKRP*IFTSAI
Trigger: AATAGCTGAGGTAAATATCAAGGGCCTCTTTGTGAG...CCATATCCAGCATGCATTAGAAAACAAGCCATAAGACACGGGAGTAGAAGGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CAA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATAGGAGAAGTGTTGGGATaGCGGCACCAGGGGCTCTTA +
Preference number: 5 (lower is better)
Translates to: ASVIKRDPQKFIAIICGIGEVLG*RHQGLL
Trigger: TAAGAGCCCCTGGTGCCGCAATCCCAACACTTCTCC...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp GCTACTATGAGATCTGCTTCCTTCAGAACAATCTCCCATGGCAAGCTTAGTCATTTTGCTTTCTTTTTCTaGGTCCCTGGGTCTGGTTTG +
Preference number: 5 (lower is better)
Translates to: ATMRSASFRTISHGKLSHFAFFF*VPGSGL
Trigger: CAAACCAGACCCAGGGACCAAGAAAAAGAAAGCAAA...ATGACTAAGCTTGCCATGGGAGATTGTTCTGAAGGAAGCAGATCTCATAGTAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS CCA 90 bp TTTACCTCAGCTATTTTAATTTCTCCGAGAGAACTGGATGTAAATTaGCCGACTTCCTCAAGGATCACAGAAAGGTGTTCGCTCACGTTC +
Preference number: 5 (lower is better)
Translates to: FTSAILISPRELDVN*PTSSRITERCSLTF
Trigger: GAACGTGAGCGAACACCTTTCTGTGATCCTTGAGGAAGTCGGCCAATTTACATCCAGTTCTCTCGGAGAAATTAAAATAGCTGAGGTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATACCCAAACAAAGTCCGTaGGTGGCTGTGGCTTTGCTT +
Preference number: 5 (lower is better)
Translates to: ASVIKRDPQKFIAIICGIPKQSP*VAVALL
Trigger: AAGCAAAGCCACAGCCACCAACGGACTTTGTTTGGG...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTACATGTGGTTTCTCATaGATGGGACCACCACTGAGC +
Preference number: 5 (lower is better)
Translates to: RTASVIKRDPQKFIAIICTCGFS*MGPPLS
Trigger: GCTCAGTGGTGGTCCCATCAATGAGAAACCACATGT...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTTTTTCATTGGAGGAGTaGACAAGCCTCACAAAGAGG +
Preference number: 5 (lower is better)
Translates to: RTASVIKRDPQKFIAIICFSLEE*TSLTKR
Trigger: CCTCTTTGTGAGGCTTGTCAACTCCTCCAATGAAAA...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp GAAAACGGCATTACTCCATATTATTATGCTCACATTGTCTTAAGGATCTCCCATTCTACTTCCTTTTCATaGGAGGAGTTGACAAGCCTC +
Preference number: 5 (lower is better)
Translates to: ENGITPYYYAHIVLRISHSTSFS*EELTSL
Trigger: GAGGCTTGTCAACTCCTCCAATGAAAAGGAAGTAGA...ATGGGAGATCCTTAAGACAATGTGAGCATAATAATATGGAGTAATGCCGTTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS-3UTR CAA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTAGGGCGTTTTCTGTATaGGTTCTTCTTTCTCCTCGT +
Preference number: 5 (lower is better)
Translates to: RTASVIKRDPQKFIAIICRAFSV*VLLSPR
Trigger: ACGAGGAGAAAGAAGAACCAATACAGAAAACGCCCT...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTTTTGCTTTCTTTTTCTaGGTCCCTGGGTCTGGTTTG +
Preference number: 5 (lower is better)
Translates to: RTASVIKRDPQKFIAIICFAFFF*VPGSGL
Trigger: CAAACCAGACCCAGGGACCAAGAAAAAGAAAGCAAA...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTTTACTGTCTTGCTTATaGATGCTGGTGACACTGGCT +
Preference number: 5 (lower is better)
Translates to: RTASVIKRDPQKFIAIICLLSCL*MLVTLA
Trigger: AGCCAGTGTCACCAGCATCAATAAGCAAGACAGTAA...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTCTCACAAAGAGGCCCTaGATATTTACCTCAGCTATT +
Preference number: 5 (lower is better)
Translates to: RTASVIKRDPQKFIAIICLTKRP*IFTSAI
Trigger: AATAGCTGAGGTAAATATCAAGGGCCTCTTTGTGAG...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATATCTACTTCCTTTTCATaGGAGGAGTTGACAAGCCTC +
Preference number: 5 (lower is better)
Translates to: ASVIKRDPQKFIAIICGISTSFS*EELTSL
Trigger: GAGGCTTGTCAACTCCTCCAATGAAAAGGAAGTAGA...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATAGTGTCCATTCACGTTTaGCTGAAGAATGTGGTTTCC +
Preference number: 5 (lower is better)
Translates to: ASVIKRDPQKFIAIICGIVSIHV*LKNVVS
Trigger: GGAAACCACATTCTTCAGCAAAACGTGAATGGACAC...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp AGGACAGCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTCTGAATCCATTATCTTaGGGAAGAAGTGGACTGAAG +
Preference number: 5 (lower is better)
Translates to: RTASVIKRDPQKFIAIICLNPLS*GRSGLK
Trigger: CTTCAGTCCACTTCTTCCCAAAGATAATGGATTCAG...ACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGCTGTCCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATATCTGGTAGAAGCCAATaGGCATTTCTTGGGAAAATG +
Preference number: 5 (lower is better)
Translates to: ASVIKRDPQKFIAIICGISGRSQ*AFLGKM
Trigger: CATTTTCCCAAGAAATGCCAATTGGCTTCTACCAGA...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS-3UTR CAA 90 bp GCTTCGGTCATAAAGCGAGACCCTCAAAAATTTATTGCAATTATTTGTGGAATACTGTACTTTACTGTCTaGCTTATTGATGCTGGTGAC +
Preference number: 5 (lower is better)
Translates to: ASVIKRDPQKFIAIICGILYFTV*LIDAGD
Trigger: GTCACCAGCATCAATAAGCAAGACAGTAAAGTACAG...TATTCCACAAATAATTGCAATAAATTTTTGAGGGTCTCGCTTTATGACCGAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000111708.9
CDS CCA 72 bp CGTCAGAGCTCGACTGGGGCTGCCTCCGTGGAACCATaGAGCTGGTGCTCTGCTTTCCCAGGCTGCTGTCTT +
Preference number: 6 (lower is better)
Translates to: RQSSTGAASVEP*SWCSAFPGCCL
Trigger: AAGACAGCAGCCTGGGAAAGCAGAGCACCAGCTCCATGGTTCCACGGAGGCAGCCCCAGTCGAGCTCTGACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS GCA 72 bp GTCCGTTGGTGGCTGTGGCTTTGCTTCCGAAGCTGCTaGCCACACTGTCACCGTGGAGTTGGCCTGCAGTGT +
Preference number: 6 (lower is better)
Translates to: VRWWLWLCFRSC*PHCHRGVGLQC
Trigger: ACACTGCAGGCCAACTCCACGGTGACAGTGTGGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 72 bp GTTCCTCCCAAACAAAGTCCGTTGGTGGCTGTGGCTTaGCTTCCGAAGCTGCTGCCCACACTGTCACCGTGG +
Preference number: 6 (lower is better)
Translates to: VPPKQSPLVAVA*LPKLLPTLSPW
Trigger: CCACGGTGACAGTGTGGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGACTTTGTTTGGGAGGAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 90 bp CGTGGAACCATGGAGCTGGTGCTCTGCTTTCCCAGGCTGCTGTCTTaGTGGGAGCAGCTCAGGATGGTGGATTTAGAAGCCAGCTGTCCT +
Preference number: 6 (lower is better)
Translates to: RGTMELVLCFPRLLS*WEQLRMVDLEASCP
Trigger: AGGACAGCTGGCTTCTAAATCCACCATCCTGAGCTGCTCCCACAAAGACAGCAGCCTGGGAAAGCAGAGCACCAGCTCCATGGTTCCACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS CAA 90 bp GCTGCTGCCCACACTGTCACCGTGGAGTTGGCCTGCAGTGTGATGTaGTCGGGGAACTGGTACAAGGAGACTGCGTGTCCATTCACGTTT +
Preference number: 6 (lower is better)
Translates to: AAAHTVTVELACSVM*SGNWYKETACPFTF
Trigger: AAACGTGAATGGACACGCAGTCTCCTTGTACCAGTTCCCCGACAACATCACACTGCAGGCCAACTCCACGGTGACAGTGTGGGCAGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 90 bp TGTGGCTTTGCTTCCGAAGCTGCTGCCCACACTGTCACCGTGGAGTaGGCCTGCAGTGTGATGTTGTCGGGGAACTGGTACAAGGAGACT +
Preference number: 6 (lower is better)
Translates to: CGFASEAAAHTVTVE*ACSVMLSGNWYKET
Trigger: AGTCTCCTTGTACCAGTTCCCCGACAACATCACACTGCAGGCCAACTCCACGGTGACAGTGTGGGCAGCAGCTTCGGAAGCAAAGCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 90 bp ACTTGCTCTGTTCCTCCCAAACAAAGTCCGTTGGTGGCTGTGGCTTaGCTTCCGAAGCTGCTGCCCACACTGTCACCGTGGAGTTGGCCT +
Preference number: 6 (lower is better)
Translates to: TCSVPPKQSPLVAVA*LPKLLPTLSPWSWP
Trigger: AGGCCAACTCCACGGTGACAGTGTGGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGACTTTGTTTGGGAGGAACAGAGCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 90 bp CCGGACTGGATCGGAACTTGCTCTGTTCCTCCCAAACAAAGTCCGTaGGTGGCTGTGGCTTTGCTTCCGAAGCTGCTGCCCACACTGTCA +
Preference number: 6 (lower is better)
Translates to: PDWIGTCSVPPKQSP*VAVALLPKLLPTLS
Trigger: TGACAGTGTGGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGACTTTGTTTGGGAGGAACAGAGCAAGTTCCGATCCAGTCCGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 90 bp GCTTGCTTCCAGTGGATAGGAGTGTACCAGGCAATGGCCTCACCATaGGGCTTGCACAAGATGGTCGTGCAGTCCGGACTGGATCGGAAC +
Preference number: 6 (lower is better)
Translates to: ACFQWIGVYQAMASP*GLHKMVVQSGLDRN
Trigger: GTTCCGATCCAGTCCGGACTGCACGACCATCTTGTGCAAGCCCAATGGTGAGGCCATTGCCTGGTACACTCCTATCCACTGGAAGCAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS GCA 72 bp TTCCTCCCAAACAAAGTCCGTTGGTGGCTGTGGCTTTaGTTCCGAAGCTGCTGCCCACACTGTCACCGTGGA +
Preference number: 6 (lower is better)
Translates to: FLPNKVRWWLWL*FRSCCPHCHRG
Trigger: TCCACGGTGACAGTGTGGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGACTTTGTTTGGGAGGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CCA 72 bp GCTCTGTTCCTCCCAAACAAAGTCCGTTGGTGGCTGTaGCTTTGCTTCCGAAGCTGCTGCCCACACTGTCAC +
Preference number: 6 (lower is better)
Translates to: ALFLPNKVRWWL*LCFRSCCPHCH
Trigger: GTGACAGTGTGGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGACTTTGTTTGGGAGGAACAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 72 bp ATAGGAGTGTACCAGGCAATGGCCTCACCATTGGGCTaGCACAAGATGGTCGTGCAGTCCGGACTGGATCGG +
Preference number: 6 (lower is better)
Translates to: IGVYQAMASPLG*HKMVVQSGLDR
Trigger: CCGATCCAGTCCGGACTGCACGACCATCTTGTGCAAGCCCAATGGTGAGGCCATTGCCTGGTACACTCCTAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 72 bp CAGTGGATAGGAGTGTACCAGGCAATGGCCTCACCATaGGGCTTGCACAAGATGGTCGTGCAGTCCGGACTG +
Preference number: 6 (lower is better)
Translates to: QWIGVYQAMASP*GLHKMVVQSGL
Trigger: CAGTCCGGACTGCACGACCATCTTGTGCAAGCCCAATGGTGAGGCCATTGCCTGGTACACTCCTATCCACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 90 bp TTCCAGTGGATAGGAGTGTACCAGGCAATGGCCTCACCATTGGGCTaGCACAAGATGGTCGTGCAGTCCGGACTGGATCGGAACTTGCTC +
Preference number: 6 (lower is better)
Translates to: FQWIGVYQAMASPLG*HKMVVQSGLDRNLL
Trigger: GAGCAAGTTCCGATCCAGTCCGGACTGCACGACCATCTTGTGCAAGCCCAATGGTGAGGCCATTGCCTGGTACACTCCTATCCACTGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS GCA 72 bp CTGAGAATTCCTCCTTTTGGGCTTGACACTGCTGCTTaGTGTGCAGGGGTCCTGGGATACCTCCCACTACTG +
Preference number: 6 (lower is better)
Translates to: LRIPPFGLDTAA*CAGVLGYLPLL
Trigger: CAGTAGTGGGAGGTATCCCAGGACCCCTGCACAGCAAGCAGCAGTGTCAAGCCCAAAAGGAGGAATTCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS CCA 72 bp AGGATCACAGAAAGGTGTTCGCTCACGTTCTCGGCTTaGGGTGTGTGGGCGGTGAGCTTCTTCGATTCTCCA +
Preference number: 6 (lower is better)
Translates to: RITERCSLTFSA*GVWAVSFFDSP
Trigger: TGGAGAATCGAAGAAGCTCACCGCCCACACACCCCAAGCCGAGAACGTGAGCGAACACCTTTCTGTGATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS CCA 72 bp GAACTTGCTCTGTTCCTCCCAAACAAAGTCCGTTGGTaGCTGTGGCTTTGCTTCCGAAGCTGCTGCCCACAC +
Preference number: 6 (lower is better)
Translates to: ELALFLPNKVRW*LWLCFRSCCPH
Trigger: GTGTGGGCAGCAGCTTCGGAAGCAAAGCCACAGCCACCAACGGACTTTGTTTGGGAGGAACAGAGCAAGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CCA 72 bp TTGGGCTTGACACTGCTGCTTGCTGTGCAGGGGTCCTaGGATACCTCCCACTACTGTGAACCTGGATTGACA +
Preference number: 6 (lower is better)
Translates to: LGLTLLLAVQGS*DTSHYCEPGLT
Trigger: TGTCAATCCAGGTTCACAGTAGTGGGAGGTATCCCAGGACCCCTGCACAGCAAGCAGCAGTGTCAAGCCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS CAA 72 bp ATGGAGCTGGTGCTCTGCTTTCCCAGGCTGCTGTCTTaGTGGGAGCAGCTCAGGATGGTGGATTTAGAAGCC +
Preference number: 6 (lower is better)
Translates to: MELVLCFPRLLS*WEQLRMVDLEA
Trigger: GGCTTCTAAATCCACCATCCTGAGCTGCTCCCACAAAGACAGCAGCCTGGGAAAGCAGAGCACCAGCTCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS CAA 72 bp AAGGATCACAGAAAGGTGTTCGCTCACGTTCTCGGCTaGGGGTGTGTGGGCGGTGAGCTTCTTCGATTCTCC +
Preference number: 6 (lower is better)
Translates to: KDHRKVFAHVLG*GCVGGELLRFS
Trigger: GGAGAATCGAAGAAGCTCACCGCCCACACACCCCAAGCCGAGAACGTGAGCGAACACCTTTCTGTGATCCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS CAA 72 bp CACAAGATGGTCGTGCAGTCCGGACTGGATCGGAACTaGCTCTGTTCCTCCCAAACAAAGTCCGTTGGTGGC +
Preference number: 6 (lower is better)
Translates to: HKMVVQSGLDRN*LCSSQTKSVGG
Trigger: GCCACCAACGGACTTTGTTTGGGAGGAACAGAGCAAGTTCCGATCCAGTCCGGACTGCACGACCATCTTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CCA 72 bp GTGGAGTTGGCCTGCAGTGTGATGTTGTCGGGGAACTaGTACAAGGAGACTGCGTGTCCATTCACGTTTTGC +
Preference number: 6 (lower is better)
Translates to: VELACSVMLSGN*YKETACPFTFC
Trigger: GCAAAACGTGAATGGACACGCAGTCTCCTTGTACCAGTTCCCCGACAACATCACACTGCAGGCCAACTCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS TCA 72 bp TTCTCCGAGAGAACTGAGAATTCCTCCTTTTGGGCTTaGCACTGCTGCTTGCTGTGCAGGGGTCCTGGGATA +
Preference number: 6 (lower is better)
Translates to: FSERTENSSFWA*HCCLLCRGPGI
Trigger: TATCCCAGGACCCCTGCACAGCAAGCAGCAGTGTCAAGCCCAAAAGGAGGAATTCTCAGTTCTCTCGGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8
CDS GCA 72 bp TCAGAGAGCTGTACGGATGTGGAGAAGTGTTGGGATTaGGGCACCAGGGGCTCTTATTGGGTAAGACAGTTG +
Preference number: 6 (lower is better)
Translates to: SESCTDVEKCWD*GTRGSYWVRQL
Trigger: CAACTGTCTTACCCAATAAGAGCCCCTGGTGCCGCAATCCCAACACTTCTCCACATCCGTACAGCTCTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 72 bp GGAGAAGTGTTGGGATTGCGGCACCAGGGGCTCTTATaGGGTAAGACAGTTGGCGGGATTTCCTTTTCTCTG +
Preference number: 6 (lower is better)
Translates to: GEVLGLRHQGLL*GKTVGGISFSL
Trigger: CAGAGAAAAGGAAATCCCGCCAACTGTCTTACCCAATAAGAGCCCCTGGTGCCGCAATCCCAACACTTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 90 bp AAGTGTTGGGATTGCGGCACCAGGGGCTCTTATTGGGTAAGACAGTaGGCGGGATTTCCTTTTCTCTGTAGAGGACAGGGTAGACTTGGG +
Preference number: 6 (lower is better)
Translates to: KCWDCGTRGSYWVRQ*AGFPFLCRGQGRLG
Trigger: CCCAAGTCTACCCTGTCCTCTACAGAGAAAAGGAAATCCCGCCAACTGTCTTACCCAATAAGAGCCCCTGGTGCCGCAATCCCAACACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CCA 72 bp ATGTCAGTCTCTAACTTCTCCCAGGCTTGCTTCCAGTaGATAGGAGTGTACCAGGCAATGGCCTCACCATTG +
Preference number: 6 (lower is better)
Translates to: MSVSNFSQACFQ*IGVYQAMASPL
Trigger: CAATGGTGAGGCCATTGCCTGGTACACTCCTATCCACTGGAAGCAAGCCTGGGAGAAGTTAGAGACTGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CCA 72 bp GAGAAGTGTTGGGATTGCGGCACCAGGGGCTCTTATTaGGTAAGACAGTTGGCGGGATTTCCTTTTCTCTGT +
Preference number: 6 (lower is better)
Translates to: EKCWDCGTRGSY*VRQLAGFPFLC
Trigger: ACAGAGAAAAGGAAATCCCGCCAACTGTCTTACCCAATAAGAGCCCCTGGTGCCGCAATCCCAACACTTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CCA 72 bp AGTCAATCAGAGAGCTGTACGGATGTGGAGAAGTGTTaGGATTGCGGCACCAGGGGCTCTTATTGGGTAAGA +
Preference number: 6 (lower is better)
Translates to: SQSESCTDVEKC*DCGTRGSYWVR
Trigger: TCTTACCCAATAAGAGCCCCTGGTGCCGCAATCCCAACACTTCTCCACATCCGTACAGCTCTCTGATTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS TCA 72 bp CTCTGGACGATAAGGTGGAGCTGTTCTGGGTGCTGGTaGTCTGGTAGAAGCCAATTGGCATTTCTTGGGAAA +
Preference number: 6 (lower is better)
Translates to: LWTIRWSCSGCW*SGRSQLAFLGK
Trigger: TTTCCCAAGAAATGCCAATTGGCTTCTACCAGATCACCAGCACCCAGAACAGCTCCACCTTATCGTCCAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS GCA 72 bp TCGAATTCAATGTCAGTCTCTAACTTCTCCCAGGCTTaGTTCCAGTGGATAGGAGTGTACCAGGCAATGGCC +
Preference number: 6 (lower is better)
Translates to: SNSMSVSNFSQA*FQWIGVYQAMA
Trigger: GGCCATTGCCTGGTACACTCCTATCCACTGGAAGCAAGCCTGGGAGAAGTTAGAGACTGACATTGAATTCGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS TCA 72 bp TTGGCATTTCTTGGGAAAATGAGCGGGACAACGGGATaGGCGTGGTGGAGTCTGAATCCATTATCTTTGGGA +
Preference number: 6 (lower is better)
Translates to: LAFLGKMSGTTG*AWWSLNPLSLG
Trigger: TCCCAAAGATAATGGATTCAGACTCCACCACGCTCATCCCGTTGTCCCGCTCATTTTCCCAAGAAATGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111708.9
ENSMUST00000149666.2
CDS GCA 72 bp CAGTGTGATGTTGTCGGGGAACTGGTACAAGGAGACTaGGTGTCCATTCACGTTTTGCTGAAGAATGTGGTT +
Preference number: 6 (lower is better)
Translates to: QCDVVGELVQGD*VSIHVLLKNVV
Trigger: AACCACATTCTTCAGCAAAACGTGAATGGACACGCAGTCTCCTTGTACCAGTTCCCCGACAACATCACACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CCA 72 bp GAGGACAGGGTAGACTTGGGAGGGCGTTTTCTGTATTaGTTCTTCTTTCTCCTCGTTTGTGGAAGAGACAGA +
Preference number: 6 (lower is better)
Translates to: EDRVDLGGRFLY*FFFLLVCGRDR
Trigger: TCTGTCTCTTCCACAAACGAGGAGAAAGAAGAACCAATACAGAAAACGCCCTCCCAAGTCTACCCTGTCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 72 bp AGAGGACAGGGTAGACTTGGGAGGGCGTTTTCTGTATaGGTTCTTCTTTCTCCTCGTTTGTGGAAGAGACAG +
Preference number: 6 (lower is better)
Translates to: RGQGRLGRAFSV*VLLSPRLWKRQ
Trigger: CTGTCTCTTCCACAAACGAGGAGAAAGAAGAACCAATACAGAAAACGCCCTCCCAAGTCTACCCTGTCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 90 bp GACAGTTGGCGGGATTTCCTTTTCTCTGTAGAGGACAGGGTAGACTaGGGAGGGCGTTTTCTGTATTGGTTCTTCTTTCTCCTCGTTTGT +
Preference number: 6 (lower is better)
Translates to: DSWRDFLFSVEDRVD*GGRFLYWFFFLLVC
Trigger: ACAAACGAGGAGAAAGAAGAACCAATACAGAAAACGCCCTCCCAAGTCTACCCTGTCCTCTACAGAGAAAAGGAAATCCCGCCAACTGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 72 bp CGGGATTTCCTTTTCTCTGTAGAGGACAGGGTAGACTaGGGAGGGCGTTTTCTGTATTGGTTCTTCTTTCTC +
Preference number: 6 (lower is better)
Translates to: RDFLFSVEDRVD*GGRFLYWFFFL
Trigger: GAGAAAGAAGAACCAATACAGAAAACGCCCTCCCAAGTCTACCCTGTCCTCTACAGAGAAAAGGAAATCCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 72 bp CTTATCTCTCCATCCTGTACTTTACTGTCTTGCTTATaGATGCTGGTGACACTGGCTAGAGGCTCCGATGCT +
Preference number: 6 (lower is better)
Translates to: LISPSCTLLSCL*MLVTLARGSDA
Trigger: AGCATCGGAGCCTCTAGCCAGTGTCACCAGCATCAATAAGCAAGACAGTAAAGTACAGGATGGAGAGATAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111708.9
ENSMUST00000149666.2
CDS CAA 90 bp GTTGTCGGGGAACTGGTACAAGGAGACTGCGTGTCCATTCACGTTTaGCTGAAGAATGTGGTTTCCAATCTCTACTTCCTTTTCATTGGA +
Preference number: 6 (lower is better)
Translates to: VVGELVQGDCVSIHV*LKNVVSNLYFLFIG
Trigger: TCCAATGAAAAGGAAGTAGAGATTGGAAACCACATTCTTCAGCAAAACGTGAATGGACACGCAGTCTCCTTGTACCAGTTCCCCGACAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 90 bp AGACTTGGGAGGGCGTTTTCTGTATTGGTTCTTCTTTCTCCTCGTTaGTGGAAGAGACAGATGCTGTTATCCATCCAAACATGTGGTTTC +
Preference number: 6 (lower is better)
Translates to: RLGRAFSVLVLLSPR*WKRQMLLSIQTCGF
Trigger: GAAACCACATGTTTGGATGGATAACAGCATCTGTCTCTTCCACAAACGAGGAGAAAGAAGAACCAATACAGAAAACGCCCTCCCAAGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS GCA 72 bp TCTTTTCTTATCTCTCCATCCTGTACTTTACTGTCTTaGTTATTGATGCTGGTGACACTGGCTAGAGGCTCC +
Preference number: 6 (lower is better)
Translates to: SFLISPSCTLLS*LLMLVTLARGS
Trigger: GGAGCCTCTAGCCAGTGTCACCAGCATCAATAAGCAAGACAGTAAAGTACAGGATGGAGAGATAAGAAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111708.9
ENSMUST00000149666.2
CDS CCA 72 bp GTGGTGGAGTCTGAATCCATTATCTTTGGGAAGAAGTaGACTGAAGAATGCTGTTTCGATGGAGTGATGGTT +
Preference number: 6 (lower is better)
Translates to: VVESESIIFGKK*TEECCFDGVMV
Trigger: AACCATCACTCCATCGAAACAGCATTCTTCAGTCCACTTCTTCCCAAAGATAATGGATTCAGACTCCACCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000111708.9
ENSMUST00000149666.2
CDS CAA 90 bp TGGAAGAGACAGATGCTGTTATCCATCCAAACATGTGGTTTCTCATaGATGGGACCACCACTGAGCATCTTTCGAATTCAATGTCAGTCT +
Preference number: 6 (lower is better)
Translates to: WKRQMLLSIQTCGFS*MGPPLSIFRIQCQS
Trigger: AGACTGACATTGAATTCGAAAGATGCTCAGTGGTGGTCCCATCAATGAGAAACCACATGTTTGGATGGATAACAGCATCTGTCTCTTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS TCA 72 bp TGGTACAAGGAGACTGCGTGTCCATTCACGTTTTGCTaGAGAATGTGGTTTCCAATCTCTACTTCCTTTTCA +
Preference number: 6 (lower is better)
Translates to: WYKETACPFTFC*RMWFPISTSFS
Trigger: TGAAAAGGAAGTAGAGATTGGAAACCACATTCTTCAGCAAAACGTGAATGGACACGCAGTCTCCTTGTACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CCA 72 bp GCTATTTTAATTTCTCCGAGAGAACTGGATGTAAATTaGCCGACTTCCTCAAGGATCACAGAAAGGTGTTCG +
Preference number: 6 (lower is better)
Translates to: AILISPRELDVN*PTSSRITERCS
Trigger: CGAACACCTTTCTGTGATCCTTGAGGAAGTCGGCCAATTTACATCCAGTTCTCTCGGAGAAATTAAAATAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS CAA 72 bp TGGTTTCCAATCTCTACTTCCTTTTCATTGGAGGAGTaGACAAGCCTCACAAAGAGGCCCTTGATATTTACC +
Preference number: 6 (lower is better)
Translates to: WFPISTSFSLEE*TSLTKRPLIFT
Trigger: GGTAAATATCAAGGGCCTCTTTGTGAGGCTTGTCAACTCCTCCAATGAAAAGGAAGTAGAGATTGGAAACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 72 bp CAGATGCTGTTATCCATCCAAACATGTGGTTTCTCATaGATGGGACCACCACTGAGCATCTTTCGAATTCAA +
Preference number: 6 (lower is better)
Translates to: QMLLSIQTCGFS*MGPPLSIFRIQ
Trigger: TTGAATTCGAAAGATGCTCAGTGGTGGTCCCATCAATGAGAAACCACATGTTTGGATGGATAACAGCATCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 72 bp AGGGCGTTTTCTGTATTGGTTCTTCTTTCTCCTCGTTaGTGGAAGAGACAGATGCTGTTATCCATCCAAACA +
Preference number: 6 (lower is better)
Translates to: RAFSVLVLLSPR*WKRQMLLSIQT
Trigger: TGTTTGGATGGATAACAGCATCTGTCTCTTCCACAAACGAGGAGAAAGAAGAACCAATACAGAAAACGCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 90 bp ATTTACCTCAGCTATTTTAATTTCTCCGAGAGAACTGGATGTAAATaGGCCGACTTCCTCAAGGATCACAGAAAGGTGTTCGCTCACGTT +
Preference number: 6 (lower is better)
Translates to: IYLSYFNFSERTGCK*ADFLKDHRKVFAHV
Trigger: AACGTGAGCGAACACCTTTCTGTGATCCTTGAGGAAGTCGGCCAATTTACATCCAGTTCTCTCGGAGAAATTAAAATAGCTGAGGTAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS CAA 72 bp TCATTGGAGGAGTTGACAAGCCTCACAAAGAGGCCCTaGATATTTACCTCAGCTATTTTAATTTCTCCGAGA +
Preference number: 6 (lower is better)
Translates to: SLEELTSLTKRP*IFTSAILISPR
Trigger: TCTCGGAGAAATTAAAATAGCTGAGGTAAATATCAAGGGCCTCTTTGTGAGGCTTGTCAACTCCTCCAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
ENSMUST00000148739.8
CDS CAA 90 bp ACTTCCTTTTCATTGGAGGAGTTGACAAGCCTCACAAAGAGGCCCTaGATATTTACCTCAGCTATTTTAATTTCTCCGAGAGAACTGGAT +
Preference number: 6 (lower is better)
Translates to: TSFSLEELTSLTKRP*IFTSAILISPRELD
Trigger: ATCCAGTTCTCTCGGAGAAATTAAAATAGCTGAGGTAAATATCAAGGGCCTCTTTGTGAGGCTTGTCAACTCCTCCAATGAAAAGGAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000111706.8
ENSMUST00000111708.9
CDS CAA 90 bp ACTTCCTTTTCATTGGAGGAGTTGACAAGCCTCACAAAGAGGCCCTaGATATTTACCTCAGCTATTTTAATTTCTCCGAGAGAACTGAGA +
Preference number: 6 (lower is better)
Translates to: TSFSLEELTSLTKRP*IFTSAILISPRELR
Trigger: TCTCAGTTCTCTCGGAGAAATTAAAATAGCTGAGGTAAATATCAAGGGCCTCTTTGTGAGGCTTGTCAACTCCTCCAATGAAAAGGAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000148739.8