RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LMBRD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073725

Ensembl transcript IDs: ENSMUST00000095062.10, ENSMUST00000186096.7, ENSMUST00000186190.2, ENSMUST00000190195.2, ENSMUST00000191471.7

Found 203 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TCTGGTTCCCAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTaGACATGGAAGCAGTCAGTCACCATCCGCTGTCCTGTCATGGTC +
Preference number: 1 (lower is better)
Translates to: SGSQEQSQKTFAMCR*TWKQSVTIRCPVMV
Trigger: GACCATGACAGGACAGCGGATGGTGACTGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 90 bp TCCCAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATaGAAGCAGTCAGTCACCATCCGCTGTCCTGTCATGGTCCACACA +
Preference number: 1 (lower is better)
Translates to: SQEQSQKTFAMCRCT*KQSVTIRCPVMVHT
Trigger: TGTGTGGACCATGACAGGACAGCGGATGGTGACTGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR GCA 90 bp AGTTATTCTGGTTCCCAAGAACAAAGTCAGAAAACCTTTGCAATGTaGAGGTGCACATGGAAGCAGTCAGTCACCATCCGCTGTCCTGTC +
Preference number: 1 (lower is better)
Translates to: SYSGSQEQSQKTFAM*RCTWKQSVTIRCPV
Trigger: GACAGGACAGCGGATGGTGACTGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 90 bp ACAGGCAAAGTGCTGGCAGAGCTGGCTTCTAGAGGTCTCTTTCTTTaGCTTATAGATTGCCTTTTTCTGTGTCCTTCCATGACTTCGTCC +
Preference number: 1 (lower is better)
Translates to: TGKVLAELASRGLFL*LIDCLFLCPSMTSS
Trigger: GGACGAAGTCATGGAAGGACACAGAAAAAGGCAATCTATAAGCCAAAGAAAGAGACCTCTAGAAGCCAGCTCTGCCAGCACTTTGCCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR TCA 90 bp GAGCAGCCAGTGCTCTTAACTGCTGAGCCATTTCTCCAGCTAGAGTaGGGACTTCAACATGTGACTTTGGAAGGATATATTCTAACAGGG +
Preference number: 1 (lower is better)
Translates to: EQPVLLTAEPFLQLE*GLQHVTLEGYILTG
Trigger: CCCTGTTAGAATATATCCTTCCAAAGTCACATGTTGAAGTCCTCACTCTAGCTGGAGAAATGGCTCAGCAGTTAAGAGCACTGGCTGCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 90 bp CTGAGCTGGCTAGAAGCTGGTTCCAGGCTTCTCATTTCCGATTCATaGCTACATAAATTGATCACTTTGAAGTCGACATGGGACATGAGG +
Preference number: 1 (lower is better)
Translates to: LSWLEAGSRLLISDS*LHKLITLKSTWDMR
Trigger: CCTCATGTCCCATGTCGACTTCAAAGTGATCAATTTATGTAGCCATGAATCGGAAATGAGAAGCCTGGAACCAGCTTCTAGCCAGCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR CCA 90 bp ATTTCCGATTCATGGCTACATAAATTGATCACTTTGAAGTCGACATaGGACATGAGGGCCCTCAGTCTTTGGAAAGCCAATGCTCTGAAT +
Preference number: 1 (lower is better)
Translates to: ISDSWLHKLITLKST*DMRALSLWKANALN
Trigger: ATTCAGAGCATTGGCTTTCCAAAGACTGAGGGCCCTCATGTCCCATGTCGACTTCAAAGTGATCAATTTATGTAGCCATGAATCGGAAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR CCA 90 bp GTACTCTCTACATGTTATTCTACGAGTATTCTCTACGAGTTATTCTaGTTCCCAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTG +
Preference number: 1 (lower is better)
Translates to: VLSTCYSTSILYELF*FPRTKSENLCNVQV
Trigger: CACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGAATACTCGTAGAATAACATGTAGAGAGTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR GCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCCGTCCCCAAGCTGCCTaGAGAGCCCAGACATCTCTA +
Preference number: 2 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPRPQAA*RAQTSL
Trigger: TAGAGATGTCTGGGCTCTGCAGGCAGCTTGGGGACG...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp TTCCTTAGGGGAAAGGCTGCCTGGGCATTCAAGTATGCAGAAGGAACCATTCAAGGGAGGCCAAGGGACTaGCCCACACCCCCAAAACGT +
Preference number: 2 (lower is better)
Translates to: FLRGKAAWAFKYAEGTIQGRPRD*PTPPKR
Trigger: ACGTTTTGGGGGTGTGGGTCAGTCCCTTGGCCTCCC...TTGAATGGTTCCTTCTGCATACTTGAATGCCCAGGCAGCCTTTCCCCTAAGGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCGGCGGTCTTGATTTTTaGTGGGCACAATATGGGAGC +
Preference number: 2 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPGGLDF*WAQYGS
Trigger: GCTCCCATATTGTGCCCACCAAAAATCAAGACCGCC...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCAGGGGAAAGGCTGCCTaGGCATTCAAGTATGCAGAA +
Preference number: 2 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPRGKAA*AFKYAE
Trigger: TTCTGCATACTTGAATGCCCAGGCAGCCTTTCCCCT...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCGTTGCCTTGGCTCAATaGCAAACACCATGGACTCAA +
Preference number: 2 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPVALAQ*QTPWTQ
Trigger: TTGAGTCCATGGTGTTTGCCATTGAGCCAAGGCAAC...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CCA 90 bp TGCAGCAGCCCTGAGCTGGCTAGAAGCTGGTTCCAGGCTTCTCATTTCCGATTCACTTTGAAGTCGACATaGGACATGAGGGCCCTCAGT +
Preference number: 2 (lower is better)
Translates to: CSSPELARSWFQASHFRFTLKST*DMRALS
Trigger: ACTGAGGGCCCTCATGTCCCATGTCGACTTCAAAGT...GAATCGGAAATGAGAAGCCTGGAACCAGCTTCTAGCCAGCTCAGGGCTGCTGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR-3UTR GCA 90 bp TTCCTTAGGGGAAAGGCTGCCTGGGCATTCAAGTATGCAGAAGGAACCATTCAACGTCCCCAAGCTGCCTaGAGAGCCCAGACATCTCTA +
Preference number: 2 (lower is better)
Translates to: FLRGKAAWAFKYAEGTIQRPQAA*RAQTSL
Trigger: TAGAGATGTCTGGGCTCTGCAGGCAGCTTGGGGACG...TTGAATGGTTCCTTCTGCATACTTGAATGCCCAGGCAGCCTTTCCCCTAAGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CCA 90 bp TGTCCTGTCATGGTCCACACAAACAGCCAAGAGCCAGCATCTTCTCTCCTCCAGGGCGGTCTTGATTTTTaGTGGGCACAATATGGGAGC +
Preference number: 2 (lower is better)
Translates to: CPVMVHTNSQEPASSLLQGGLDF*WAQYGS
Trigger: GCTCCCATATTGTGCCCACCAAAAATCAAGACCGCC...CTGGAGGAGAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR GCA 90 bp TGCAGCAGCCCTGAGCTGGCTAGAAGCTGGTTCCAGGCTTCTCATTTCCGATTCACAGGCCAGGCCTTTTaGTATAAACAAACAGCAGAG +
Preference number: 2 (lower is better)
Translates to: CSSPELARSWFQASHFRFTGQAF*YKQTAE
Trigger: CTCTGCTGTTTGTTTATAGCAAAAGGCCTGGCCTGT...GAATCGGAAATGAGAAGCCTGGAACCAGCTTCTAGCCAGCTCAGGGCTGCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR-3UTR GCA 90 bp TGCAGCAGCCCTGAGCTGGCTAGAAGCTGGTTCCAGGCTTCTCATTTCCGATTCAAAACCTTTGCAATGTaGAGGTGCACATGGAAGCAG +
Preference number: 2 (lower is better)
Translates to: CSSPELARSWFQASHFRFKTFAM*RCTWKQ
Trigger: CTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTT...GAATCGGAAATGAGAAGCCTGGAACCAGCTTCTAGCCAGCTCAGGGCTGCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR-3UTR CCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCATTATCCAACAGCTATaGAAGCCAGATGTTGACAGG +
Preference number: 2 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPIIQQL*KPDVDR
Trigger: CCTGTCAACATCTGGCTTCCATAGCTGTTGGATAAT...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp TGCAGCAGCCCTGAGCTGGCTAGAAGCTGGTTCCAGGCTTCTCATTTCCGATTCTCCAAATCCTTTACATaGGAAGCAGCTGAGTATGCT +
Preference number: 2 (lower is better)
Translates to: CSSPELARSWFQASHFRFSKSFT*EAAEYA
Trigger: AGCATACTCAGCTGCTTCTCATGTAAAGGATTTGGA...GAATCGGAAATGAGAAGCCTGGAACCAGCTTCTAGCCAGCTCAGGGCTGCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR-3UTR TCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCGAGGACTTCAACATGTaGCTTTGGAAGGATATATTC +
Preference number: 2 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPEDFNM*LWKDIF
Trigger: GAATATATCCTTCCAAAGTCACATGTTGAAGTCCTC...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp TGTCCTGTCATGGTCCACACAAACAGCCAAGAGCCAGCATCTTCTCTCCTCCAGTTTCTCCAGCTAGAGTaGGGACTTCAACATGTGACT +
Preference number: 2 (lower is better)
Translates to: CPVMVHTNSQEPASSLLQFLQLE*GLQHVT
Trigger: AGTCACATGTTGAAGTCCTCACTCTAGCTGGAGAAA...CTGGAGGAGAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR GCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCTTAAGATCTGAACACTaGCACCTGGAACACATCTTA +
Preference number: 2 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPLRSEH*HLEHIL
Trigger: TAAGATGTGTTCCAGGTGGCAGTGTTCAGATCTTAA...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCATTCTGTGTCCTTCCATaGCTTCGTCCCCAAGCTGCC +
Preference number: 2 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSFCVLP*LRPQAA
Trigger: GGCAGCTTGGGGACGAAGTCATGGAAGGACACAGAA...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCAGACTCATTATGTTATaGGCAGAATTGAAAGCAAGC +
Preference number: 2 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPRLIML*AELKAS
Trigger: GCTTGCTTTCAATTCTGCCCATAACATAATGAGTCT...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp TGCAGCAGCCCTGAGCTGGCTAGAAGCTGGTTCCAGGCTTCTCATTTCCGATTCTTCACAGCGAAGCAATaGACTAATTCCATTTCTGTT +
Preference number: 2 (lower is better)
Translates to: CSSPELARSWFQASHFRFFTAKQ*TNSISV
Trigger: AACAGAAATGGAATTAGTTCATTGCTTCGCTGTGAA...GAATCGGAAATGAGAAGCCTGGAACCAGCTTCTAGCCAGCTCAGGGCTGCTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR-3UTR CCA 90 bp TGCAGCAGCCCTGAGCTGGCTAGAAGCTGGTTCCAGGCTTCTCATTTCCGATTCATTCCCTCACAAACCTaGAAACTCTGTATTTACACA +
Preference number: 2 (lower is better)
Translates to: CSSPELARSWFQASHFRFIPSQT*KLCIYT
Trigger: TGTGTAAATACAGAGTTTCCAGGTTTGTGAGGGAAT...GAATCGGAAATGAGAAGCCTGGAACCAGCTTCTAGCCAGCTCAGGGCTGCTGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR-3UTR CCA 90 bp AGTGGCCAACATCAAGTGTGCTGTGTCTGTAGATTGTTTCTAAATCAGTACATTGCAGCAGCCCTGAGCTaGCTAGAAGCTGGTTCCAGG +
Preference number: 2 (lower is better)
Translates to: SGQHQVCCVCRLFLNQYIAAALS*LEAGSR
Trigger: CCTGGAACCAGCTTCTAGCCAGCTCAGGGCTGCTGC...AATGTACTGATTTAGAAACAATCTACAGACACAGCACACTTGATGTTGGCCACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR CAA 90 bp TCTCTACGAGTTATTCTGGTTCCCAAGAACAAAGTCAGAAAACCTTaGCAATGTGCAGGTGCACATGGAAGCAGTCAGTCACCATCCGCT +
Preference number: 2 (lower is better)
Translates to: SLRVILVPKNKVRKP*QCAGAHGSSQSPSA
Trigger: AGCGGATGGTGACTGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CAA 90 bp GAAGCTGGTTCCAGGCTTCTCATTTCCGATTCATGGCTACATAAATaGATCACTTTGAAGTCGACATGGGACATGAGGGCCCTCAGTCTT +
Preference number: 2 (lower is better)
Translates to: EAGSRLLISDSWLHK*ITLKSTWDMRALSL
Trigger: AAGACTGAGGGCCCTCATGTCCCATGTCGACTTCAAAGTGATCAATTTATGTAGCCATGAATCGGAAATGAGAAGCCTGGAACCAGCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR-3UTR CCA 90 bp TGTCCTGTCATGGTCCACACAAACAGCCAAGAGCCAGCATCTTCTCTCCTCCAGATTCCCTCACAAACCTaGAAACTCTGTATTTACACA +
Preference number: 2 (lower is better)
Translates to: CPVMVHTNSQEPASSLLQIPSQT*KLCIYT
Trigger: TGTGTAAATACAGAGTTTCCAGGTTTGTGAGGGAAT...CTGGAGGAGAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCATGTTATGGGCAGAATTaGAAGCAAGCTGCCCATGAG +
Preference number: 2 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSCYGQN*KQAAHE
Trigger: CTCATGGGCAGCTTGCTTTCAATTCTGCCCATAACA...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR GCA 90 bp TTCCTTAGGGGAAAGGCTGCCTGGGCATTCAAGTATGCAGAAGGAACCATTCAAAGCCTTTATTTTCACTaGCCAGAACGCAGTCAGAAA +
Preference number: 2 (lower is better)
Translates to: FLRGKAAWAFKYAEGTIQSLYFH*PERSQK
Trigger: TTTCTGACTGCGTTCTGGGCAGTGAAAATAAAGGCT...TTGAATGGTTCCTTCTGCATACTTGAATGCCCAGGCAGCCTTTCCCCTAAGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CCA 90 bp TGTCCTGTCATGGTCCACACAAACAGCCAAGAGCCAGCATCTTCTCTCCTCCAGAGAAACACCATAAAATaGCATCATATCCCATCACAA +
Preference number: 2 (lower is better)
Translates to: CPVMVHTNSQEPASSLLQRNTIK*HHIPSQ
Trigger: TTGTGATGGGATATGATGCCATTTTATGGTGTTTCT...CTGGAGGAGAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CCA 90 bp TGTCCTGTCATGGTCCACACAAACAGCCAAGAGCCAGCATCTTCTCTCCTCCAGAGAGGTCTCTTTCTTTaGCTTATAGATTGCCTTTTT +
Preference number: 2 (lower is better)
Translates to: CPVMVHTNSQEPASSLLQRGLFL*LIDCLF
Trigger: AAAAAGGCAATCTATAAGCCAAAGAAAGAGACCTCT...CTGGAGGAGAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp TTCCTTAGGGGAAAGGCTGCCTGGGCATTCAAGTATGCAGAAGGAACCATTCAAACCAACACAACTTCATaGTGGGCTTCATATATAAGG +
Preference number: 2 (lower is better)
Translates to: FLRGKAAWAFKYAEGTIQTNTTS*WASYIR
Trigger: CCTTATATATGAAGCCCATCATGAAGTTGTGTTGGT...TTGAATGGTTCCTTCTGCATACTTGAATGCCCAGGCAGCCTTTCCCCTAAGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCAATGTCAAGAAAAAGCTaGGAGGAGTCAGGACTTGGA +
Preference number: 2 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSMSRKS*EESGLG
Trigger: TCCAAGTCCTGACTCCTCTCAGCTTTTTCTTGACAT...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR GCA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCACGTGTGTTAGTTAGTTaGCTTGGCTCAATGGCAAAC +
Preference number: 2 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSRVLVS*LGSMAN
Trigger: GTTTGCCATTGAGCCAAGGCAACTAACTAACACACG...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR GCA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCAAATGGCCAAGAGCCCTaGAAGCAAATAAAACATCAG +
Preference number: 2 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSNGQEP*KQIKHQ
Trigger: CTGATGTTTTATTTGCTTGCAGGGCTCTTGGCCATT...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp GAGTATTCTCTACGAGTTATTCTGGTTCCCAAGAACAAAGTCAGAAAACCTTTGTGTTATGGGCAGAATTaGAAGCAAGCTGCCCATGAG +
Preference number: 2 (lower is better)
Translates to: EYSLRVILVPKNKVRKPLCYGQN*KQAAHE
Trigger: CTCATGGGCAGCTTGCTTTCAATTCTGCCCATAACA...CAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGAATACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp AGGAACCATTCAAGTACGGCTATGAGGAATCACTCATGTAAATACAGAGGAAATCCATGGATTAAGATCTaGACACTGCCACCTGGAACA +
Preference number: 2 (lower is better)
Translates to: RNHSSTAMRNHSCKYRGNPWIKI*TLPPGT
Trigger: TGTTCCAGGTGGCAGTGTTCAGATCTTAATCCATGG...ATTTCCTCTGTATTTACATGAGTGATTCCTCATAGCCGTACTTGAATGGTTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CCA 90 bp GAGTATTCTCTACGAGTTATTCTGGTTCCCAAGAACAAAGTCAGAAAACCTTTGTTGGTGGGCACAATATaGGAGCCTAATACTGACAGG +
Preference number: 2 (lower is better)
Translates to: EYSLRVILVPKNKVRKPLLVGTI*EPNTDR
Trigger: CCTGTCAGTATTAGGCTCCCATATTGTGCCCACCAA...CAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGAATACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CCA 90 bp GAGTATTCTCTACGAGTTATTCTGGTTCCCAAGAACAAAGTCAGAAAACCTTTGGTTGCCTTGGCTCAATaGCAAACACCATGGACTCAA +
Preference number: 2 (lower is better)
Translates to: EYSLRVILVPKNKVRKPLVALAQ*QTPWTQ
Trigger: TTGAGTCCATGGTGTTTGCCATTGAGCCAAGGCAAC...CAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGAATACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp GCCATTTCTCCAGCTAGAGTGAGGACTTCAACATGTGACTTTGGAAGGATATATTATATAAGGCGGTCTTaGTTTTTGGTGGGCACAATA +
Preference number: 2 (lower is better)
Translates to: AISPARVRTSTCDFGRIYYIRRS*FLVGTI
Trigger: TATTGTGCCCACCAAAAATCAAGACCGCCTTATATA...ATATATCCTTCCAAAGTCACATGTTGAAGTCCTCACTCTAGCTGGAGAAATGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR GCA 90 bp AGGAACCATTCAAGTACGGCTATGAGGAATCACTCATGTAAATACAGAGGAAATAGCCTTTATTTTCACTaGCCAGAACGCAGTCAGAAA +
Preference number: 2 (lower is better)
Translates to: RNHSSTAMRNHSCKYRGNSLYFH*PERSQK
Trigger: TTTCTGACTGCGTTCTGGGCAGTGAAAATAAAGGCT...ATTTCCTCTGTATTTACATGAGTGATTCCTCATAGCCGTACTTGAATGGTTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR GCA 90 bp GAGTATTCTCTACGAGTTATTCTGGTTCCCAAGAACAAAGTCAGAAAACCTTTGCTGGGCATTCAAGTATaGAGAAGGAACCATTCAAGT +
Preference number: 2 (lower is better)
Translates to: EYSLRVILVPKNKVRKPLLGIQV*RRNHSS
Trigger: ACTTGAATGGTTCCTTCTGCATACTTGAATGCCCAG...CAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGAATACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp GAGTATTCTCTACGAGTTATTCTGGTTCCCAAGAACAAAGTCAGAAAACCTTTGACCAACACAACTTCATaGTGGGCTTCATATATAAGG +
Preference number: 2 (lower is better)
Translates to: EYSLRVILVPKNKVRKPLTNTTS*WASYIR
Trigger: CCTTATATATGAAGCCCATCATGAAGTTGTGTTGGT...CAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGAATACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp AGGAACCATTCAAGTACGGCTATGAGGAATCACTCATGTAAATACAGAGGAAATGAGGACTTCAACATGTaGCTTTGGAAGGATATATTC +
Preference number: 2 (lower is better)
Translates to: RNHSSTAMRNHSCKYRGNEDFNM*LWKDIF
Trigger: GAATATATCCTTCCAAAGTCACATGTTGAAGTCCTC...ATTTCCTCTGTATTTACATGAGTGATTCCTCATAGCCGTACTTGAATGGTTCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR GCA 90 bp GAGTATTCTCTACGAGTTATTCTGGTTCCCAAGAACAAAGTCAGAAAACCTTTGTTAAGATCTGAACACTaGCACCTGGAACACATCTTA +
Preference number: 2 (lower is better)
Translates to: EYSLRVILVPKNKVRKPLLRSEH*HLEHIL
Trigger: TAAGATGTGTTCCAGGTGGCAGTGTTCAGATCTTAA...CAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGAATACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CCA 90 bp TTCTTTCACAGGTTTCCAAATCCTTTACATGAGAAGCAGCTGAGTATGCTGTCAAGACTCATTATGTTATaGGCAGAATTGAAAGCAAGC +
Preference number: 2 (lower is better)
Translates to: FFHRFPNPLHEKQLSMLSRLIML*AELKAS
Trigger: GCTTGCTTTCAATTCTGCCCATAACATAATGAGTCT...TGACAGCATACTCAGCTGCTTCTCATGTAAAGGATTTGGAAACCTGTGAAAGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp GAGTATTCTCTACGAGTTATTCTGGTTCCCAAGAACAAAGTCAGAAAACCTTTGCAATGGGTTGTCAAGTaGAAATGTATTATCCAACAG +
Preference number: 2 (lower is better)
Translates to: EYSLRVILVPKNKVRKPLQWVVK*KCIIQQ
Trigger: CTGTTGGATAATACATTTTCACTTGACAACCCATTG...CAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGAATACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR TCA 90 bp GAGTATTCTCTACGAGTTATTCTGGTTCCCAAGAACAAAGTCAGAAAACCTTTGTTCACAGCGAAGCAATaGACTAATTCCATTTCTGTT +
Preference number: 2 (lower is better)
Translates to: EYSLRVILVPKNKVRKPLFTAKQ*TNSISV
Trigger: AACAGAAATGGAATTAGTTCATTGCTTCGCTGTGAA...CAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGAATACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 72 bp TCCTCTGAGATCCAGGTCTCTCTGGCCTGTTCTCCTTaGGAGACTGAGATGGGACTCAGATGGGAAGGCCTG +
Preference number: 3 (lower is better)
Translates to: SSEIQVSLACSP*ETEMGLRWEGL
Trigger: CAGGCCTTCCCATCTGAGTCCCATCTCAGTCTCCCAAGGAGAACAGGCCAGAGAGACCTGGATCTCAGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR TCA 72 bp GATCCAGGTCTCTCTGGCCTGTTCTCCTTGGGAGACTaGGATGGGACTCAGATGGGAAGGCCTGTGTGCAAA +
Preference number: 3 (lower is better)
Translates to: DPGLSGLFSLGD*DGTQMGRPVCK
Trigger: TTTGCACACAGGCCTTCCCATCTGAGTCCCATCTCAGTCTCCCAAGGAGAACAGGCCAGAGAGACCTGGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR CCA 72 bp AGGTCTCTCTGGCCTGTTCTCCTTGGGAGACTGAGATaGGACTCAGATGGGAAGGCCTGTGTGCAAACTACC +
Preference number: 3 (lower is better)
Translates to: RSLWPVLLGRLR*DSDGKACVQTT
Trigger: GGTAGTTTGCACACAGGCCTTCCCATCTGAGTCCCATCTCAGTCTCCCAAGGAGAACAGGCCAGAGAGACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR GCA 72 bp CTTTTTCTGTGTCCTTCCATGACTTCGTCCCCAAGCTaGCTGCAGAGCCCAGACATCTCTAGGAGGGATCCA +
Preference number: 3 (lower is better)
Translates to: LFLCPSMTSSPS*LQSPDISRRDP
Trigger: TGGATCCCTCCTAGAGATGTCTGGGCTCTGCAGGCAGCTTGGGGACGAAGTCATGGAAGGACACAGAAAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 72 bp CATGGAAGCAGTCAGTCACCATCCGCTGTCCTGTCATaGTCCACACAAACAGCCAAGAGCCAGCATCTTCTC +
Preference number: 3 (lower is better)
Translates to: HGSSQSPSAVLS*STQTAKSQHLL
Trigger: GAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACAGCGGATGGTGACTGACTGCTTCCATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CAA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCTCCCATCACAAGTGGTaGCTGGCATTTGAATTCAGG +
Preference number: 3 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPSHHKW*LAFEFR
Trigger: CCTGAATTCAAATGCCAGCAACCACTTGTGATGGGA...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 72 bp TTCCTTTGCTGCAGCAGCCCTGAGCTGGCTAGAAGCTaGTTCCAGGCTTCTCATTTCCGATTCATGGCTACA +
Preference number: 3 (lower is better)
Translates to: FLCCSSPELARS*FQASHFRFMAT
Trigger: TGTAGCCATGAATCGGAAATGAGAAGCCTGGAACCAGCTTCTAGCCAGCTCAGGGCTGCTGCAGCAAAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR-3UTR CAA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCGCCATGCTCTCATTTTaGATGAAAGCTAGACAGTTC +
Preference number: 3 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPAMLSF*MKARQF
Trigger: GAACTGTCTAGCTTTCATCAAAAATGAGAGCATGGC...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 72 bp GCCTGTTCTCCTTGGGAGACTGAGATGGGACTCAGATaGGAAGGCCTGTGTGCAAACTACCTACTGATCTTT +
Preference number: 3 (lower is better)
Translates to: ACSPWETEMGLR*EGLCANYLLIF
Trigger: AAAGATCAGTAGGTAGTTTGCACACAGGCCTTCCCATCTGAGTCCCATCTCAGTCTCCCAAGGAGAACAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR GCA 72 bp GGTTCCCAAGAACAAAGTCAGAAAACCTTTGCAATGTaGAGGTGCACATGGAAGCAGTCAGTCACCATCCGC +
Preference number: 3 (lower is better)
Translates to: GSQEQSQKTFAM*RCTWKQSVTIR
Trigger: GCGGATGGTGACTGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTGGGAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 72 bp CAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATaGAAGCAGTCAGTCACCATCCGCTGTCCTGTCATG +
Preference number: 3 (lower is better)
Translates to: QSQKTFAMCRCT*KQSVTIRCPVM
Trigger: CATGACAGGACAGCGGATGGTGACTGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CAA 90 bp TGTCCTGTCATGGTCCACACAAACAGCCAAGAGCCAGCATCTTCTCTCCTCCAGGCCATGCTCTCATTTTaGATGAAAGCTAGACAGTTC +
Preference number: 3 (lower is better)
Translates to: CPVMVHTNSQEPASSLLQAMLSF*MKARQF
Trigger: GAACTGTCTAGCTTTCATCAAAAATGAGAGCATGGC...CTGGAGGAGAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CAA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCAGAGAGGAGTCAGGACTaGGAAGCACAGGTAGTGAGG +
Preference number: 3 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSERSQD*EAQVVR
Trigger: CCTCACTACCTGTGCTTCCAAGTCCTGACTCCTCTC...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR GCA 72 bp GTGAGGAAGTTTAGGAGGCAGCGTGTGTTAGTTAGTTaGCTTGGCTCAATGGCAAACACCATGGACTCAATG +
Preference number: 3 (lower is better)
Translates to: VRKFRRQRVLVS*LGSMANTMDSM
Trigger: CATTGAGTCCATGGTGTTTGCCATTGAGCCAAGGCAACTAACTAACACACGCTGCCTCCTAAACTTCCTCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 72 bp GTGCTGGCAGAGCTGGCTTCTAGAGGTCTCTTTCTTTaGCTTATAGATTGCCTTTTTCTGTGTCCTTCCATG +
Preference number: 3 (lower is better)
Translates to: VLAELASRGLFL*LIDCLFLCPSM
Trigger: CATGGAAGGACACAGAAAAAGGCAATCTATAAGCCAAAGAAAGAGACCTCTAGAAGCCAGCTCTGCCAGCAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CAA 90 bp AGTGGCCAACATCAAGTGTGCTGTGTCTGTAGATTGTTTCTAAATCAGTACATTGAGAGGAGTCAGGACTaGGAAGCACAGGTAGTGAGG +
Preference number: 3 (lower is better)
Translates to: SGQHQVCCVCRLFLNQYIERSQD*EAQVVR
Trigger: CCTCACTACCTGTGCTTCCAAGTCCTGACTCCTCTC...AATGTACTGATTTAGAAACAATCTACAGACACAGCACACTTGATGTTGGCCACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR TCA 72 bp AAAATGTATTATCCAACAGCTATGGAAGCCAGATGTTaGCAGGCAAAGTGCTGGCAGAGCTGGCTTCTAGAG +
Preference number: 3 (lower is better)
Translates to: KMYYPTAMEARC*QAKCWQSWLLE
Trigger: CTCTAGAAGCCAGCTCTGCCAGCACTTTGCCTGTCAACATCTGGCTTCCATAGCTGTTGGATAATACATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR GCA 72 bp CAATATGGGAGCCTAATACTGACAGGCCAGGCCTTTTaGTATAAACAAACAGCAGAGAGGCTTAGTGTTGCA +
Preference number: 3 (lower is better)
Translates to: QYGSLILTGQAF*YKQTAERLSVA
Trigger: TGCAACACTAAGCCTCTCTGCTGTTTGTTTATAGCAAAAGGCCTGGCCTGTCAGTATTAGGCTCCCATATTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR GCA 72 bp CACCATAAAATGGCATCATATCCCATCACAAGTGGTTaGTGGCATTTGAATTCAGGACCTCTGAAGAGCAGC +
Preference number: 3 (lower is better)
Translates to: HHKMASYPITSG*WHLNSGPLKSS
Trigger: GCTGCTCTTCAGAGGTCCTGAATTCAAATGCCAGCAACCACTTGTGATGGGATATGATGCCATTTTATGGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 72 bp CATAAAATGGCATCATATCCCATCACAAGTGGTTGCTaGCATTTGAATTCAGGACCTCTGAAGAGCAGCCAG +
Preference number: 3 (lower is better)
Translates to: HKMASYPITSGC*HLNSGPLKSSQ
Trigger: CTGGCTGCTCTTCAGAGGTCCTGAATTCAAATGCCAGCAACCACTTGTGATGGGATATGATGCCATTTTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR-3UTR CAA 90 bp AGGAACCATTCAAGTACGGCTATGAGGAATCACTCATGTAAATACAGAGGAAATAAGTACAGTCAGAACTaGGGCCGAAGATTCAGGGGC +
Preference number: 3 (lower is better)
Translates to: RNHSSTAMRNHSCKYRGNKYSQN*GRRFRG
Trigger: GCCCCTGAATCTTCGGCCCAAGTTCTGACTGTACTT...ATTTCCTCTGTATTTACATGAGTGATTCCTCATAGCCGTACTTGAATGGTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR GCA 72 bp GACCTTAGTAGTACACCAGAAAACACTATTAGTTTATaGTGCATATGTGGGAGTGCAGGCATAGGCAGGTCA +
Preference number: 3 (lower is better)
Translates to: DLSSTPENTISL*CICGSAGIGRS
Trigger: TGACCTGCCTATGCCTGCACTCCCACATATGCAGCATAAACTAATAGTGTTTTCTGGTGTACTACTAAGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR CCA 72 bp GGGTTGATAAAGAATTTCCTTAGGGGAAAGGCTGCCTaGGCATTCAAGTATGCAGAAGGAACCATTCAAGTA +
Preference number: 3 (lower is better)
Translates to: GLIKNFLRGKAA*AFKYAEGTIQV
Trigger: TACTTGAATGGTTCCTTCTGCATACTTGAATGCCCAGGCAGCCTTTCCCCTAAGGAAATTCTTTATCAACCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 72 bp TCATGGCTACATAAATTGATCACTTTGAAGTCGACATaGGACATGAGGGCCCTCAGTCTTTGGAAAGCCAAT +
Preference number: 3 (lower is better)
Translates to: SWLHKLITLKST*DMRALSLWKAN
Trigger: ATTGGCTTTCCAAAGACTGAGGGCCCTCATGTCCCATGTCGACTTCAAAGTGATCAATTTATGTAGCCATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR-3UTR CAA 90 bp TTCCTTAGGGGAAAGGCTGCCTGGGCATTCAAGTATGCAGAAGGAACCATTCAACATGGACTCAATGGGTaGTCAAGTGAAAATGTATTA +
Preference number: 3 (lower is better)
Translates to: FLRGKAAWAFKYAEGTIQHGLNG*SSENVL
Trigger: TAATACATTTTCACTTGACAACCCATTGAGTCCATG...TTGAATGGTTCCTTCTGCATACTTGAATGCCCAGGCAGCCTTTCCCCTAAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 72 bp CTAGAAGCTGGTTCCAGGCTTCTCATTTCCGATTCATaGCTACATAAATTGATCACTTTGAAGTCGACATGG +
Preference number: 3 (lower is better)
Translates to: LEAGSRLLISDS*LHKLITLKSTW
Trigger: CCATGTCGACTTCAAAGTGATCAATTTATGTAGCCATGAATCGGAAATGAGAAGCCTGGAACCAGCTTCTAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR TCA 72 bp CTACTTGAGTTAGACTCATTATGTTATGGGCAGAATTaGAAGCAAGCTGCCCATGAGTTATGCTTACCCACA +
Preference number: 3 (lower is better)
Translates to: LLELDSLCYGQN*KQAAHELCLPT
Trigger: TGTGGGTAAGCATAACTCATGGGCAGCTTGCTTTCAATTCTGCCCATAACATAATGAGTCTAACTCAAGTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR TCA 72 bp ACATATTCTTGTAGAGGTACTCCATGGATTAAGATCTaGACACTGCCACCTGGAACACATCTTAGAGTCTTG +
Preference number: 3 (lower is better)
Translates to: TYSCRGTPWIKI*TLPPGTHLRVL
Trigger: CAAGACTCTAAGATGTGTTCCAGGTGGCAGTGTTCAGATCTTAATCCATGGAGTACCTCTACAAGAATATGT
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR TCA 72 bp CAATGGCAAACACCATGGACTCAATGGGTTGTCAAGTaGAAATGTATTATCCAACAGCTATGGAAGCCAGAT +
Preference number: 3 (lower is better)
Translates to: QWQTPWTQWVVK*KCIIQQLWKPD
Trigger: ATCTGGCTTCCATAGCTGTTGGATAATACATTTTCACTTGACAACCCATTGAGTCCATGGTGTTTGCCATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR TCA 72 bp TTCAAGTATGCAGAAGGAACCATTCAAGTACGGCTATaGGGAATCACTCATGTAAATACAGAGGAAATGGCC +
Preference number: 3 (lower is better)
Translates to: FKYAEGTIQVRL*GITHVNTEEMA
Trigger: GGCCATTTCCTCTGTATTTACATGAGTGATTCCTCATAGCCGTACTTGAATGGTTCCTTCTGCATACTTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR GCA 72 bp CTAGCTGACATTAGCGAATTAAGCCTTTATTTTCACTaGCCAGAACGCAGTCAGAAAACTCTGTTAAGTCAC +
Preference number: 3 (lower is better)
Translates to: LADISELSLYFH*PERSQKTLLSH
Trigger: GTGACTTAACAGAGTTTTCTGACTGCGTTCTGGGCAGTGAAAATAAAGGCTTAATTCGCTAATGTCAGCTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CCA 72 bp ACATGTTATTCTACGAGTATTCTCTACGAGTTATTCTaGTTCCCAAGAACAAAGTCAGAAAACCTTTGCAAT +
Preference number: 3 (lower is better)
Translates to: TCYSTSILYELF*FPRTKSENLCN
Trigger: ATTGCAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGAATACTCGTAGAATAACATGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCCGGGTAACAGTACACTaGTCTTTAGGGGCATCTGCG +
Preference number: 4 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPRVTVH*SLGASA
Trigger: CGCAGATGCCCCTAAAGATCAGTGTACTGTTACCCG...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp TGTCCTGTCATGGTCCACACAAACAGCCAAGAGCCAGCATCTTCTCTCCTCCAGGCAGCAGTGCTGATGTaGTCAGAGCAACAGCCAGTG +
Preference number: 4 (lower is better)
Translates to: CPVMVHTNSQEPASSLLQAAVLM*SEQQPV
Trigger: CACTGGCTGTTGCTCTGATCACATCAGCACTGCTGC...CTGGAGGAGAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCTGGTATGAAGGACAATaGGCAGGAGGATCATGCAGA +
Preference number: 4 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPWYEGQ*AGGSCR
Trigger: TCTGCATGATCCTCCTGCTCATTGTCCTTCATACCA...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp AAAGGTCACTTCAGAGAAGCCAGGTTCAGTGTTCAGCACCCATATGGCGGCTCAACCTCACTTTCCCGCTaGCTCTGGTACTTCCGAACG +
Preference number: 4 (lower is better)
Translates to: KGHFREARFSVQHPYGGSTSLSR*LWYFRT
Trigger: CGTTCGGAAGTACCAGAGTCAGCGGGAAAGTGAGGT...TGAGCCGCCATATGGGTGCTGAACACTGAACCTGGCTTCTCTGAAGTGACCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186096.7
CDS-3UTR TCA 90 bp AAAGGTCACTTCAGAGAAGCCAGGTTCAGTGTTCAGCACCCATATGGCGGCTCAGCAGCAGTGCTGATGTaGTCAGAGCAACAGCCAGTG +
Preference number: 4 (lower is better)
Translates to: KGHFREARFSVQHPYGGSAAVLM*SEQQPV
Trigger: CACTGGCTGTTGCTCTGATCACATCAGCACTGCTGC...TGAGCCGCCATATGGGTGCTGAACACTGAACCTGGCTTCTCTGAAGTGACCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186096.7
CDS-3UTR TCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCCGTCAGCCCAGTCCTTaGATGTGCCATTTTGATTTT +
Preference number: 4 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPRQPSP*MCHFDF
Trigger: AAAATCAAAATGGCACATTCAAGGACTGGGCTGACG...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCAATAGTATGCAGCACTaGAGAACCAGAACTTGTGGA +
Preference number: 4 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPNSMQH*RTRTCG
Trigger: TCCACAAGTTCTGGTTCTTCAGTGCTGCATACTATT...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CCA 90 bp GTGGCTAAAGGTCACTTCAGAGAAGCCAGGTTCAGTGTTCAGCACCCATATGGCTTTGGGTGCATTTGCTaGCGTCGTCCTCATCCTTCT +
Preference number: 4 (lower is better)
Translates to: VAKGHFREARFSVQHPYGFGCIC*RRPHPS
Trigger: AGAAGGATGAGGACGACGCCAGCAAATGCACCCAAA...GCCATATGGGTGCTGAACACTGAACCTGGCTTCTCTGAAGTGACCTTTAGCCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186096.7
CDS-3UTR CCA 90 bp GTGGCTAAAGGTCACTTCAGAGAAGCCAGGTTCAGTGTTCAGCACCCATATGGCAGCGCCGTTTTAATTTaGGTGCATTTGCTGGCGTCG +
Preference number: 4 (lower is better)
Translates to: VAKGHFREARFSVQHPYGSAVLI*VHLLAS
Trigger: CGACGCCAGCAAATGCACCCAAATTAAAACGGCGCT...GCCATATGGGTGCTGAACACTGAACCTGGCTTCTCTGAAGTGACCTTTAGCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186096.7
CDS-3UTR CCA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCCAAAAGCATGTTCAGTaGATTGCTCAGGTTAGTTCC +
Preference number: 4 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPQKHVQ*IAQVSS
Trigger: GGAACTAACCTGAGCAATCCACTGAACATGCTTTTG...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp AGGCTTAGTGTTGCAACTGAAGCAGTAACGGAGCTTACAGACAAGCAAGAGTACAGAGCTGCCAGGCCTTaGCCAGTTCCAAGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: RLSVATEAVTELTDKQEYRAARP*PVPRSS
Trigger: TGAAGACCTTGGAACTGGTCAAGGCCTGGCAGCTCT...GTACTCTTGCTTGTCTGTAAGCTCCGTTACTGCTTCAGTTGCAACACTAAGCCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CAA 72 bp CAGGGAATCAATCAGAGCAGCAAGTACAGTCAGAACTaGGGCCGAAGATTCAGGGGCAGACGAGTTAACTCT +
Preference number: 4 (lower is better)
Translates to: QGINQSSKYSQN*GRRFRGRRVNS
Trigger: AGAGTTAACTCGTCTGCCCCTGAATCTTCGGCCCAAGTTCTGACTGTACTTGCTGCTCTGATTGATTCCCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp AAAGGTCACTTCAGAGAAGCCAGGTTCAGTGTTCAGCACCCATATGGCGGCTCACGTCAGCCCAGTCCTTaGATGTGCCATTTTGATTTT +
Preference number: 4 (lower is better)
Translates to: KGHFREARFSVQHPYGGSRQPSP*MCHFDF
Trigger: AAAATCAAAATGGCACATTCAAGGACTGGGCTGACG...TGAGCCGCCATATGGGTGCTGAACACTGAACCTGGCTTCTCTGAAGTGACCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186096.7
CDS-3UTR TCA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCAAGAGCTGCCAGGCCTTaGCCAGTTCCAAGGTCTTCA +
Preference number: 4 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSRAARP*PVPRSS
Trigger: TGAAGACCTTGGAACTGGTCAAGGCCTGGCAGCTCT...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp AGGCTTAGTGTTGCAACTGAAGCAGTAACGGAGCTTACAGACAAGCAAGAGTACAGAAATAAGAGTGCCTaGGGCCTGGTTCGCCCTCTT +
Preference number: 4 (lower is better)
Translates to: RLSVATEAVTELTDKQEYRNKSA*GLVRPL
Trigger: AAGAGGGCGAACCAGGCCTCAGGCACTCTTATTTCT...GTACTCTTGCTTGTCTGTAAGCTCCGTTACTGCTTCAGTTGCAACACTAAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp AGGCTTAGTGTTGCAACTGAAGCAGTAACGGAGCTTACAGACAAGCAAGAGTACTGGCACAGCGAGGGTTaGATTGCCTTTATGGGCATC +
Preference number: 4 (lower is better)
Translates to: RLSVATEAVTELTDKQEYWHSEG*IAFMGI
Trigger: GATGCCCATAAAGGCAATTCAACCCTCGCTGTGCCA...GTACTCTTGCTTGTCTGTAAGCTCCGTTACTGCTTCAGTTGCAACACTAAGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR GCA 90 bp TGCAGCAGCCCTGAGCTGGCTAGAAGCTGGTTCCAGGCTTCTCATTTCCGATTCAGTCTTTCTTCACATTaGTTTAAGGCACGTCTATCC +
Preference number: 4 (lower is better)
Translates to: CSSPELARSWFQASHFRFSLSSH*FKARLS
Trigger: GGATAGACGTGCCTTAAAGCAATGTGAAGAAAGACT...GAATCGGAAATGAGAAGCCTGGAACCAGCTTCTAGCCAGCTCAGGGCTGCTGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
CDS-3UTR GCA 90 bp TGTCCTGTCATGGTCCACACAAACAGCCAAGAGCCAGCATCTTCTCTCCTCCAGTCAATGAATTCCAAGTaGCGCTCTCTTTTCCTAAGC +
Preference number: 4 (lower is better)
Translates to: CPVMVHTNSQEPASSLLQSMNSK*RSLFLS
Trigger: GCTTAGGAAAAGAGAGCGGCACTTGGAATTCATTGA...CTGGAGGAGAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CCA 90 bp TTCCTTAGGGGAAAGGCTGCCTGGGCATTCAAGTATGCAGAAGGAACCATTCAATTTGGGTGCATTTGCTaGCGTCGTCCTCATCCTTCT +
Preference number: 4 (lower is better)
Translates to: FLRGKAAWAFKYAEGTIQFGCIC*RRPHPS
Trigger: AGAAGGATGAGGACGACGCCAGCAAATGCACCCAAA...TTGAATGGTTCCTTCTGCATACTTGAATGCCCAGGCAGCCTTTCCCCTAAGGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CAA 72 bp ATGGCATCATATCCCATCACAAGTGGTTGCTGGCATTaGAATTCAGGACCTCTGAAGAGCAGCCAGTGCTCT +
Preference number: 4 (lower is better)
Translates to: MASYPITSGCWH*NSGPLKSSQCS
Trigger: AGAGCACTGGCTGCTCTTCAGAGGTCCTGAATTCAAATGCCAGCAACCACTTGTGATGGGATATGATGCCAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp TGCTTACCCACAAGCAATACTGAGACATTGTTTAGCCAATCAGCGGAAGCTACTAGAAATAAGAGTGCCTaGGGCCTGGTTCGCCCTCTT +
Preference number: 4 (lower is better)
Translates to: CLPTSNTETLFSQSAEATRNKSA*GLVRPL
Trigger: AAGAGGGCGAACCAGGCCTCAGGCACTCTTATTTCT...AGTAGCTTCCGCTGATTGGCTAAACAATGTCTCAGTATTGCTTGTGGGTAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCATGGCACAGCGAGGGTTaGATTGCCTTTATGGGCATC +
Preference number: 4 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSWHSEG*IAFMGI
Trigger: GATGCCCATAAAGGCAATTCAACCCTCGCTGTGCCA...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp GCCATTTCTCCAGCTAGAGTGAGGACTTCAACATGTGACTTTGGAAGGATATATACCTCACTTTCCCGCTaGCTCTGGTACTTCCGAACG +
Preference number: 4 (lower is better)
Translates to: AISPARVRTSTCDFGRIYTSLSR*LWYFRT
Trigger: CGTTCGGAAGTACCAGAGTCAGCGGGAAAGTGAGGT...ATATATCCTTCCAAAGTCACATGTTGAAGTCCTCACTCTAGCTGGAGAAATGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000191471.7
CDS-3UTR GCA 90 bp TGTCCTGTCATGGTCCACACAAACAGCCAAGAGCCAGCATCTTCTCTCCTCCAGAGTCTTTCTTCACATTaGTTTAAGGCACGTCTATCC +
Preference number: 4 (lower is better)
Translates to: CPVMVHTNSQEPASSLLQSLSSH*FKARLS
Trigger: GGATAGACGTGCCTTAAAGCAATGTGAAGAAAGACT...CTGGAGGAGAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CCA 90 bp TGTCCTGTCATGGTCCACACAAACAGCCAAGAGCCAGCATCTTCTCTCCTCCAGAAGAACCAGAACTTGTaGAGGAAAATGTATGTTCGG +
Preference number: 4 (lower is better)
Translates to: CPVMVHTNSQEPASSLLQKNQNL*RKMYVR
Trigger: CCGAACATACATTTTCCTCCACAAGTTCTGGTTCTT...CTGGAGGAGAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CCA 90 bp TTCCTTAGGGGAAAGGCTGCCTGGGCATTCAAGTATGCAGAAGGAACCATTCAATTGAGTTGTTGTTGTTaGGCAGATGCAGAGGCACAA +
Preference number: 4 (lower is better)
Translates to: FLRGKAAWAFKYAEGTIQLSCCC*ADAEAQ
Trigger: TTGTGCCTCTGCATCTGCCCAACAACAACAACTCAA...TTGAATGGTTCCTTCTGCATACTTGAATGCCCAGGCAGCCTTTCCCCTAAGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp AAAGGTCACTTCAGAGAAGCCAGGTTCAGTGTTCAGCACCCATATGGCGGCTCAACACACAGAAGAGAATaGCAGAATACAGAGTATAGT +
Preference number: 4 (lower is better)
Translates to: KGHFREARFSVQHPYGGSTHRRE*QNTEYS
Trigger: ACTATACTCTGTATTCTGTCATTCTCTTCTGTGTGT...TGAGCCGCCATATGGGTGCTGAACACTGAACCTGGCTTCTCTGAAGTGACCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186096.7
CDS-3UTR TCA 90 bp AGCGGAAGCTACTTAAAAGTTTCACATTATTCCAGAGACCCTAAGGCACAAGACTCAAGGTCAGAGAGCTaGTGGAAAAGGACAGAGCTG +
Preference number: 4 (lower is better)
Translates to: SGSYLKVSHYSRDPKAQDSRSES*WKRTEL
Trigger: CAGCTCTGTCCTTTTCCATCAGCTCTCTGACCTTGA...GTCTTGTGCCTTAGGGTCTCTGGAATAATGTGAAACTTTTAAGTAGCTTCCGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp TGCTTACCCACAAGCAATACTGAGACATTGTTTAGCCAATCAGCGGAAGCTACTACCAGCTGTTTTCAATaGATTCCAAGTGCCGCTCTC +
Preference number: 4 (lower is better)
Translates to: CLPTSNTETLFSQSAEATTSCFQ*IPSAAL
Trigger: GAGAGCGGCACTTGGAATTCATTGAAAACAGCTGGT...AGTAGCTTCCGCTGATTGGCTAAACAATGTCTCAGTATTGCTTGTGGGTAAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CCA 90 bp AGCGGAAGCTACTTAAAAGTTTCACATTATTCCAGAGACCCTAAGGCACAAGACTTTGGGTGCATTTGCTaGCGTCGTCCTCATCCTTCT +
Preference number: 4 (lower is better)
Translates to: SGSYLKVSHYSRDPKAQDFGCIC*RRPHPS
Trigger: AGAAGGATGAGGACGACGCCAGCAAATGCACCCAAA...GTCTTGTGCCTTAGGGTCTCTGGAATAATGTGAAACTTTTAAGTAGCTTCCGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CCA 90 bp AGCGGAAGCTACTTAAAAGTTTCACATTATTCCAGAGACCCTAAGGCACAAGACACGTCTATCCCTCGCTaGCAAAGGTCGACCATCTTT +
Preference number: 4 (lower is better)
Translates to: SGSYLKVSHYSRDPKAQDTSIPR*QRSTIF
Trigger: AAAGATGGTCGACCTTTGCCAGCGAGGGATAGACGT...GTCTTGTGCCTTAGGGTCTCTGGAATAATGTGAAACTTTTAAGTAGCTTCCGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CAA 72 bp GAAAATGTATTATCCAACAGCTATGGAAGCCAGATGTaGACAGGCAAAGTGCTGGCAGAGCTGGCTTCTAGA +
Preference number: 4 (lower is better)
Translates to: ENVLSNSYGSQM*TGKVLAELASR
Trigger: TCTAGAAGCCAGCTCTGCCAGCACTTTGCCTGTCAACATCTGGCTTCCATAGCTGTTGGATAATACATTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
3UTR CAA 72 bp TCCAGGCTTCTCATTTCCGATTCATGGCTACATAAATaGATCACTTTGAAGTCGACATGGGACATGAGGGCC +
Preference number: 4 (lower is better)
Translates to: SRLLISDSWLHK*ITLKSTWDMRA
Trigger: GGCCCTCATGTCCCATGTCGACTTCAAAGTGATCAATTTATGTAGCCATGAATCGGAAATGAGAAGCCTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
CDS-3UTR TCA 90 bp CATTCAGCGACAGTAATAAGATTCAGGCAGAAAACTGACATACATACAAGCATGAGAAATAAGAGTGCCTaGGGCCTGGTTCGCCCTCTT +
Preference number: 4 (lower is better)
Translates to: HSATVIRFRQKTDIHTSMRNKSA*GLVRPL
Trigger: AAGAGGGCGAACCAGGCCTCAGGCACTCTTATTTCT...CATGCTTGTATGTATGTCAGTTTTCTGCCTGAATCTTATTACTGTCGCTGAATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190195.2
CDS-3UTR TCA 90 bp GCGACAGTAATAAGATTCAGGCAGAAAACTGACATACATACAAGCATGCACTTATGGCACAGCGAGGGTTaGATTGCCTTTATGGGCATC +
Preference number: 4 (lower is better)
Translates to: ATVIRFRQKTDIHTSMHLWHSEG*IAFMGI
Trigger: GATGCCCATAAAGGCAATTCAACCCTCGCTGTGCCA...TAAGTGCATGCTTGTATGTATGTCAGTTTTCTGCCTGAATCTTATTACTGTCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190195.2
CDS-3UTR TCA 90 bp GCGACAGTAATAAGATTCAGGCAGAAAACTGACATACATACAAGCATGCACTTACGGGTAACAGTACACTaGTCTTTAGGGGCATCTGCG +
Preference number: 4 (lower is better)
Translates to: ATVIRFRQKTDIHTSMHLRVTVH*SLGASA
Trigger: CGCAGATGCCCCTAAAGATCAGTGTACTGTTACCCG...TAAGTGCATGCTTGTATGTATGTCAGTTTTCTGCCTGAATCTTATTACTGTCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190195.2
CDS-3UTR TCA 90 bp AGGAACCATTCAAGTACGGCTATGAGGAATCACTCATGTAAATACAGAGGAAATCGGGTAACAGTACACTaGTCTTTAGGGGCATCTGCG +
Preference number: 4 (lower is better)
Translates to: RNHSSTAMRNHSCKYRGNRVTVH*SLGASA
Trigger: CGCAGATGCCCCTAAAGATCAGTGTACTGTTACCCG...ATTTCCTCTGTATTTACATGAGTGATTCCTCATAGCCGTACTTGAATGGTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR GCA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCAATCTTTAGGGGCATCTaGGTCACATCTTTTTGGCAC +
Preference number: 4 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSIFRGI*VTSFWH
Trigger: GTGCCAAAAAGATGTGACGCAGATGCCCCTAAAGAT...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp AGTGGCCAACATCAAGTGTGCTGTGTCTGTAGATTGTTTCTAAATCAGTACATTTCAAGGTCAGAGAGCTaGTGGAAAAGGACAGAGCTG +
Preference number: 4 (lower is better)
Translates to: SGQHQVCCVCRLFLNQYISRSES*WKRTEL
Trigger: CAGCTCTGTCCTTTTCCATCAGCTCTCTGACCTTGA...AATGTACTGATTTAGAAACAATCTACAGACACAGCACACTTGATGTTGGCCACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
CDS-3UTR TCA 90 bp TTCTTTCACAGGTTTCCAAATCCTTTACATGAGAAGCAGCTGAGTATGCTGTCAACCAGCTGTTTTCAATaGATTCCAAGTGCCGCTCTC +
Preference number: 4 (lower is better)
Translates to: FFHRFPNPLHEKQLSMLSTSCFQ*IPSAAL
Trigger: GAGAGCGGCACTTGGAATTCATTGAAAACAGCTGGT...TGACAGCATACTCAGCTGCTTCTCATGTAAAGGATTTGGAAACCTGTGAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR GCA 90 bp GCCATTTCTCCAGCTAGAGTGAGGACTTCAACATGTGACTTTGGAAGGATATATATCTTTAGGGGCATCTaGGTCACATCTTTTTGGCAC +
Preference number: 4 (lower is better)
Translates to: AISPARVRTSTCDFGRIYIFRGI*VTSFWH
Trigger: GTGCCAAAAAGATGTGACGCAGATGCCCCTAAAGAT...ATATATCCTTCCAAAGTCACATGTTGAAGTCCTCACTCTAGCTGGAGAAATGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR GCA 90 bp TTCCTTAGGGGAAAGGCTGCCTGGGCATTCAAGTATGCAGAAGGAACCATTCAAGTTACCAAAATAGTATaGAGCACTGAAGAACCAGAA +
Preference number: 4 (lower is better)
Translates to: FLRGKAAWAFKYAEGTIQVTKIV*STEEPE
Trigger: TTCTGGTTCTTCAGTGCTGCATACTATTTTGGTAAC...TTGAATGGTTCCTTCTGCATACTTGAATGCCCAGGCAGCCTTTCCCCTAAGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CCA 90 bp AGTGGCCAACATCAAGTGTGCTGTGTCTGTAGATTGTTTCTAAATCAGTACATTACGTCTATCCCTCGCTaGCAAAGGTCGACCATCTTT +
Preference number: 4 (lower is better)
Translates to: SGQHQVCCVCRLFLNQYITSIPR*QRSTIF
Trigger: AAAGATGGTCGACCTTTGCCAGCGAGGGATAGACGT...AATGTACTGATTTAGAAACAATCTACAGACACAGCACACTTGATGTTGGCCACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
3UTR CAA 72 bp CCTTGGCTCAATGGCAAACACCATGGACTCAATGGGTaGTCAAGTGAAAATGTATTATCCAACAGCTATGGA +
Preference number: 4 (lower is better)
Translates to: PWLNGKHHGLNG*SSENVLSNSYG
Trigger: TCCATAGCTGTTGGATAATACATTTTCACTTGACAACCCATTGAGTCCATGGTGTTTGCCATTGAGCCAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp GAGTATTCTCTACGAGTTATTCTGGTTCCCAAGAACAAAGTCAGAAAACCTTTGTGGTATGAAGGACAATaGGCAGGAGGATCATGCAGA +
Preference number: 4 (lower is better)
Translates to: EYSLRVILVPKNKVRKPLWYEGQ*AGGSCR
Trigger: TCTGCATGATCCTCCTGCTCATTGTCCTTCATACCA...CAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGAATACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp GCGACAGTAATAAGATTCAGGCAGAAAACTGACATACATACAAGCATGCACTTATGGTATGAAGGACAATaGGCAGGAGGATCATGCAGA +
Preference number: 4 (lower is better)
Translates to: ATVIRFRQKTDIHTSMHLWYEGQ*AGGSCR
Trigger: TCTGCATGATCCTCCTGCTCATTGTCCTTCATACCA...TAAGTGCATGCTTGTATGTATGTCAGTTTTCTGCCTGAATCTTATTACTGTCGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190195.2
CDS-3UTR GCA 90 bp AGCGGAAGCTACTTAAAAGTTTCACATTATTCCAGAGACCCTAAGGCACAAGACTCAATGAATTCCAAGTaGCGCTCTCTTTTCCTAAGC +
Preference number: 4 (lower is better)
Translates to: SGSYLKVSHYSRDPKAQDSMNSK*RSLFLS
Trigger: GCTTAGGAAAAGAGAGCGGCACTTGGAATTCATTGA...GTCTTGTGCCTTAGGGTCTCTGGAATAATGTGAAACTTTTAAGTAGCTTCCGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CCA 90 bp GAACACATCTTAGAGTCTTGTGGTTTTAGGCAGTTTAACACTTTTTCACGAACTAGCGCCGTTTTAATTTaGGTGCATTTGCTGGCGTCG +
Preference number: 4 (lower is better)
Translates to: EHILESCGFRQFNTFSRTSAVLI*VHLLAS
Trigger: CGACGCCAGCAAATGCACCCAAATTAAAACGGCGCT...AGTTCGTGAAAAAGTGTTAAACTGCCTAAAACCACAAGACTCTAAGATGTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp GAGTATTCTCTACGAGTTATTCTGGTTCCCAAGAACAAAGTCAGAAAACCTTTGCGTCAGCCCAGTCCTTaGATGTGCCATTTTGATTTT +
Preference number: 4 (lower is better)
Translates to: EYSLRVILVPKNKVRKPLRQPSP*MCHFDF
Trigger: AAAATCAAAATGGCACATTCAAGGACTGGGCTGACG...CAAAGGTTTTCTGACTTTGTTCTTGGGAACCAGAATAACTCGTAGAGAATACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCAACACACAGAAGAGAATaGCAGAATACAGAGTATAGT +
Preference number: 4 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSTHRRE*QNTEYS
Trigger: ACTATACTCTGTATTCTGTCATTCTCTTCTGTGTGT...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR TCA 90 bp TCAGCGACAGTAATAAGATTCAGGCAGAAAACTGACATACATACAAGCATGCACAATAGTATGCAGCACTaGAGAACCAGAACTTGTGGA +
Preference number: 4 (lower is better)
Translates to: SATVIRFRQKTDIHTSMHNSMQH*RTRTCG
Trigger: TCCACAAGTTCTGGTTCTTCAGTGCTGCATACTATT...GTGCATGCTTGTATGTATGTCAGTTTTCTGCCTGAATCTTATTACTGTCGCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190195.2
CDS-3UTR TCA 90 bp TTCTTTCACAGGTTTCCAAATCCTTTACATGAGAAGCAGCTGAGTATGCTGTCAAATAGTATGCAGCACTaGAGAACCAGAACTTGTGGA +
Preference number: 4 (lower is better)
Translates to: FFHRFPNPLHEKQLSMLSNSMQH*RTRTCG
Trigger: TCCACAAGTTCTGGTTCTTCAGTGCTGCATACTATT...TGACAGCATACTCAGCTGCTTCTCATGTAAAGGATTTGGAAACCTGTGAAAGAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR GCA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCATCCAAAAGAACCAAATaGCAATGTTTCGAATTCCTG +
Preference number: 4 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSSKRTK*QCFEFL
Trigger: CAGGAATTCGAAACATTGGCATTTGGTTCTTTTGGA...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR GCA 90 bp AACCATTCAGCGACAGTAATAAGATTCAGGCAGAAAACTGACATACATACAAGCATCTTTAGGGGCATCTaGGTCACATCTTTTTGGCAC +
Preference number: 4 (lower is better)
Translates to: NHSATVIRFRQKTDIHTSIFRGI*VTSFWH
Trigger: GTGCCAAAAAGATGTGACGCAGATGCCCCTAAAGAT...GCTTGTATGTATGTCAGTTTTCTGCCTGAATCTTATTACTGTCGCTGAATGGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000190195.2
CDS-3UTR CCA 90 bp AGTGGCCAACATCAAGTGTGCTGTGTCTGTAGATTGTTTCTAAATCAGTACATTTTGAGTTGTTGTTGTTaGGCAGATGCAGAGGCACAA +
Preference number: 4 (lower is better)
Translates to: SGQHQVCCVCRLFLNQYILSCCC*ADAEAQ
Trigger: TTGTGCCTCTGCATCTGCCCAACAACAACAACTCAA...AATGTACTGATTTAGAAACAATCTACAGACACAGCACACTTGATGTTGGCCACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
CDS-3UTR CCA 90 bp GCCATTTCTCCAGCTAGAGTGAGGACTTCAACATGTGACTTTGGAAGGATATATAAGAACCAGAACTTGTaGAGGAAAATGTATGTTCGG +
Preference number: 4 (lower is better)
Translates to: AISPARVRTSTCDFGRIYKNQNL*RKMYVR
Trigger: CCGAACATACATTTTCCTCCACAAGTTCTGGTTCTT...ATATATCCTTCCAAAGTCACATGTTGAAGTCCTCACTCTAGCTGGAGAAATGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CCA 90 bp GAACACATCTTAGAGTCTTGTGGTTTTAGGCAGTTTAACACTTTTTCACGAACTCAAAAGCATGTTCAGTaGATTGCTCAGGTTAGTTCC +
Preference number: 4 (lower is better)
Translates to: EHILESCGFRQFNTFSRTQKHVQ*IAQVSS
Trigger: GGAACTAACCTGAGCAATCCACTGAACATGCTTTTG...AGTTCGTGAAAAAGTGTTAAACTGCCTAAAACCACAAGACTCTAAGATGTGTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CCA 90 bp AACCATTCAGCGACAGTAATAAGATTCAGGCAGAAAACTGACATACATACAAGCAAGAACCAGAACTTGTaGAGGAAAATGTATGTTCGG +
Preference number: 4 (lower is better)
Translates to: NHSATVIRFRQKTDIHTSKNQNL*RKMYVR
Trigger: CCGAACATACATTTTCCTCCACAAGTTCTGGTTCTT...GCTTGTATGTATGTCAGTTTTCTGCCTGAATCTTATTACTGTCGCTGAATGGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190195.2
CDS-3UTR GCA 90 bp AGGAACCATTCAAGTACGGCTATGAGGAATCACTCATGTAAATACAGAGGAAATGTTACCAAAATAGTATaGAGCACTGAAGAACCAGAA +
Preference number: 4 (lower is better)
Translates to: RNHSSTAMRNHSCKYRGNVTKIV*STEEPE
Trigger: TTCTGGTTCTTCAGTGCTGCATACTATTTTGGTAAC...ATTTCCTCTGTATTTACATGAGTGATTCCTCATAGCCGTACTTGAATGGTTCCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR GCA 90 bp CATTCAGCGACAGTAATAAGATTCAGGCAGAAAACTGACATACATACAAGCATGGTTACCAAAATAGTATaGAGCACTGAAGAACCAGAA +
Preference number: 4 (lower is better)
Translates to: HSATVIRFRQKTDIHTSMVTKIV*STEEPE
Trigger: TTCTGGTTCTTCAGTGCTGCATACTATTTTGGTAAC...CATGCTTGTATGTATGTCAGTTTTCTGCCTGAATCTTATTACTGTCGCTGAATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190195.2
CDS-3UTR CAA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCTCTGTTGAGTTGTTGTaGTTGGGCAGATGCAGAGGC +
Preference number: 5 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPSVELL*LGRCRG
Trigger: GCCTCTGCATCTGCCCAACAACAACAACTCAACAGA...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS CCA 90 bp AGGCACGTCTATCCCTCGCTGGCAAAGGTCGACCATCTTTGCTCTTaGATCGAATCGTCTGAATGTGCTGCTCCACTTCCTCGATGTCCT +
Preference number: 5 (lower is better)
Translates to: RHVYPSLAKVDHLCS*IESSECAAPLPRCP
Trigger: AGGACATCGAGGAAGTGGAGCAGCACATTCAGACGATTCGATCCAAGAGCAAAGATGGTCGACCTTTGCCAGCGAGGGATAGACGTGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000186190.2
ENSMUST00000191471.7
CDS GCA 90 bp AGCTTCACCTTTTCCCACTCTGTTGAGTTGTTGTTGTTGGGCAGATaGAGAGGCACAAAGGCACCAACGAGAAGCAGCAGAGCGCAGATC +
Preference number: 5 (lower is better)
Translates to: SFTFSHSVELLLLGR*RGTKAPTRSSRAQI
Trigger: GATCTGCGCTCTGCTGCTTCTCGTTGGTGCCTTTGTGCCTCTGCATCTGCCCAACAACAACAACTCAACAGAGTGGGAAAAGGTGAAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS GCA 90 bp GCTTTAAGGCACGTCTATCCCTCGCTGGCAAAGGTCGACCATCTTTaGTCTTGGATCGAATCGTCTGAATGTGCTGCTCCACTTCCTCGA +
Preference number: 5 (lower is better)
Translates to: ALRHVYPSLAKVDHL*SWIESSECAAPLPR
Trigger: TCGAGGAAGTGGAGCAGCACATTCAGACGATTCGATCCAAGAGCAAAGATGGTCGACCTTTGCCAGCGAGGGATAGACGTGCCTTAAAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000186190.2
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp AAAGGTCACTTCAGAGAAGCCAGGTTCAGTGTTCAGCACCCATATGGCGGCTCAGAGCGCCGTTTTAATTaGGGTGCATTTGCTGGCGTC +
Preference number: 5 (lower is better)
Translates to: KGHFREARFSVQHPYGGSERRFN*GAFAGV
Trigger: GACGCCAGCAAATGCACCCAAATTAAAACGGCGCTC...TGAGCCGCCATATGGGTGCTGAACACTGAACCTGGCTTCTCTGAAGTGACCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186096.7
CDS-3UTR CAA 90 bp TGTCCTGTCATGGTCCACACAAACAGCCAAGAGCCAGCATCTTCTCTCCTCCAGTCTGTTGAGTTGTTGTaGTTGGGCAGATGCAGAGGC +
Preference number: 5 (lower is better)
Translates to: CPVMVHTNSQEPASSLLQSVELL*LGRCRG
Trigger: GCCTCTGCATCTGCCCAACAACAACAACTCAACAGA...CTGGAGGAGAGAAGATGCTGGCTCTTGGCTGTTTGTGTGGACCATGACAGGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS TCA 90 bp ACTGAGGCGCGAGACTGTAGATCATGTAGCTGGTATGAAGGACAATaGGCAGGAGGATCATGCAGAGAAATAAGAGTGCCTGAGGCCTGG +
Preference number: 5 (lower is better)
Translates to: TEARDCRSCSWYEGQ*AGGSCREIRVPEAW
Trigger: CCAGGCCTCAGGCACTCTTATTTCTCTGCATGATCCTCCTGCTCATTGTCCTTCATACCAGCTACATGATCTACAGTCTCGCGCCTCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000190195.2
ENSMUST00000191471.7
CDS CCA 90 bp CAAACAGGAGCTTCACCTTTTCCCACTCTGTTGAGTTGTTGTTGTTaGGCAGATGCAGAGGCACAAAGGCACCAACGAGAAGCAGCAGAG +
Preference number: 5 (lower is better)
Translates to: QTGASPFPTLLSCCC*ADAEAQRHQREAAE
Trigger: CTCTGCTGCTTCTCGTTGGTGCCTTTGTGCCTCTGCATCTGCCCAACAACAACAACTCAACAGAGTGGGAAAAGGTGAAGCTCCTGTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp AAAGGTCACTTCAGAGAAGCCAGGTTCAGTGTTCAGCACCCATATGGCGGCTCATTAATTTGGGTGCATTaGCTGGCGTCGTCCTCATCC +
Preference number: 5 (lower is better)
Translates to: KGHFREARFSVQHPYGGSLIWVH*LASSSS
Trigger: GGATGAGGACGACGCCAGCAAATGCACCCAAATTAA...TGAGCCGCCATATGGGTGCTGAACACTGAACCTGGCTTCTCTGAAGTGACCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186096.7
CDS TCA 90 bp CTCGCTGGCAAAGGTCGACCATCTTTGCTCTTGGATCGAATCGTCTaGATGTGCTGCTCCACTTCCTCGATGTCCTTGAATGTGCCATTT +
Preference number: 5 (lower is better)
Translates to: LAGKGRPSLLLDRIV*MCCSTSSMSLNVPF
Trigger: AAATGGCACATTCAAGGACATCGAGGAAGTGGAGCAGCACATTCAGACGATTCGATCCAAGAGCAAAGATGGTCGACCTTTGCCAGCGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186190.2
CDS TCA 90 bp AGTTCCAAGGTCTTCAAACAGGAGCTTCACCTTTTCCCACTCTGTTaGGTTGTTGTTGTTGGGCAGATGCAGAGGCACAAAGGCACCAAC +
Preference number: 5 (lower is better)
Translates to: SSKVFKQELHLFPLC*VVVVGQMQRHKGTN
Trigger: GTTGGTGCCTTTGTGCCTCTGCATCTGCCCAACAACAACAACTCAACAGAGTGGGAAAAGGTGAAGCTCCTGTTTGAAGACCTTGGAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp GAGCCAGCATCTTCTCTCCTCCAGCCCTTAGAGGAGCAACATAACCCCAAGCCCGTGCTTCTAGTGCCTTaGATTAGGTTTAAAGGTAAT +
Preference number: 5 (lower is better)
Translates to: EPASSLLQPLEEQHNPKPVLLVP*IRFKGN
Trigger: ATTACCTTTAAACCTAATCAAAGGCACTAGAAGCAC...GGGCTTGGGGTTATGTTGCTCCTCTAAGGGCTGGAGGAGAGAAGATGCTGGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp AAAGGTCACTTCAGAGAAGCCAGGTTCAGTGTTCAGCACCCATATGGCGGCTCAAATCCCAAAGTGTACTaGAGCGCCGTTTTAATTTGG +
Preference number: 5 (lower is better)
Translates to: KGHFREARFSVQHPYGGSNPKVY*SAVLIW
Trigger: CCAAATTAAAACGGCGCTCAAGTACACTTTGGGATT...TGAGCCGCCATATGGGTGCTGAACACTGAACCTGGCTTCTCTGAAGTGACCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000186096.7
CDS-3UTR CAA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCATCCCACTCTGTTGAGTaGTTGTTGTTGGGCAGATGC +
Preference number: 5 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSSHSVE*LLLGRC
Trigger: GCATCTGCCCAACAACAACAACTCAACAGAGTGGGA...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp CAAGAACAAAGTCAGAAAACCTTTGCAATGTGCAGGTGCACATGGAAGCAGTCATTGGCACAGCGAGGGTaGAATTGCCTTTATGGGCAT +
Preference number: 5 (lower is better)
Translates to: QEQSQKTFAMCRCTWKQSLAQRG*NCLYGH
Trigger: ATGCCCATAAAGGCAATTCAACCCTCGCTGTGCCAA...TGACTGCTTCCATGTGCACCTGCACATTGCAAAGGTTTTCTGACTTTGTTCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp GCCATTTCTCCAGCTAGAGTGAGGACTTCAACATGTGACTTTGGAAGGATATATTCCCACTCTGTTGAGTaGTTGTTGTTGGGCAGATGC +
Preference number: 5 (lower is better)
Translates to: AISPARVRTSTCDFGRIYSHSVE*LLLGRC
Trigger: GCATCTGCCCAACAACAACAACTCAACAGAGTGGGA...ATATATCCTTCCAAAGTCACATGTTGAAGTCCTCACTCTAGCTGGAGAAATGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS GCA 90 bp TCCGATCAAGAACACCACGAGAAAGGCCCAGTTACCAAAATAGTATaGAGCACTGAAGAACCAGAACTTGTGGAGGAAAATGTATGTTCG +
Preference number: 5 (lower is better)
Translates to: SDQEHHEKGPVTKIV*STEEPELVEENVCS
Trigger: CGAACATACATTTTCCTCCACAAGTTCTGGTTCTTCAGTGCTGCATACTATTTTGGTAACTGGGCCTTTCTCGTGGTGTTCTTGATCGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp TTCTTTCACAGGTTTCCAAATCCTTTACATGAGAAGCAGCTGAGTATGCTGTCATTAATTTGGGTGCATTaGCTGGCGTCGTCCTCATCC +
Preference number: 5 (lower is better)
Translates to: FFHRFPNPLHEKQLSMLSLIWVH*LASSSS
Trigger: GGATGAGGACGACGCCAGCAAATGCACCCAAATTAA...TGACAGCATACTCAGCTGCTTCTCATGTAAAGGATTTGGAAACCTGTGAAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp AGGAACCATTCAAGTACGGCTATGAGGAATCACTCATGTAAATACAGAGGAAATGAGCGCCGTTTTAATTaGGGTGCATTTGCTGGCGTC +
Preference number: 5 (lower is better)
Translates to: RNHSSTAMRNHSCKYRGNERRFN*GAFAGV
Trigger: GACGCCAGCAAATGCACCCAAATTAAAACGGCGCTC...ATTTCCTCTGTATTTACATGAGTGATTCCTCATAGCCGTACTTGAATGGTTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp TTCTTTCACAGGTTTCCAAATCCTTTACATGAGAAGCAGCTGAGTATGCTGTCACCTTTTCCCACTCTGTaGAGTTGTTGTTGTTGGGCA +
Preference number: 5 (lower is better)
Translates to: FFHRFPNPLHEKQLSMLSPFPTL*SCCCWA
Trigger: TGCCCAACAACAACAACTCAACAGAGTGGGAAAAGG...TGACAGCATACTCAGCTGCTTCTCATGTAAAGGATTTGGAAACCTGTGAAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp TTCTTTCACAGGTTTCCAAATCCTTTACATGAGAAGCAGCTGAGTATGCTGTCAACAGCGAGGGTTGAATaGCCTTTATGGGCATCAGAA +
Preference number: 5 (lower is better)
Translates to: FFHRFPNPLHEKQLSMLSTARVE*PLWASE
Trigger: TTCTGATGCCCATAAAGGCAATTCAACCCTCGCTGT...TGACAGCATACTCAGCTGCTTCTCATGTAAAGGATTTGGAAACCTGTGAAAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp GCGACAGTAATAAGATTCAGGCAGAAAACTGACATACATACAAGCATGCACTTATTGGCACAGCGAGGGTaGAATTGCCTTTATGGGCAT +
Preference number: 5 (lower is better)
Translates to: ATVIRFRQKTDIHTSMHLLAQRG*NCLYGH
Trigger: ATGCCCATAAAGGCAATTCAACCCTCGCTGTGCCAA...TAAGTGCATGCTTGTATGTATGTCAGTTTTCTGCCTGAATCTTATTACTGTCGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190195.2
CDS-3UTR CAA 90 bp AGGAACCATTCAAGTACGGCTATGAGGAATCACTCATGTAAATACAGAGGAAATTTGGCACAGCGAGGGTaGAATTGCCTTTATGGGCAT +
Preference number: 5 (lower is better)
Translates to: RNHSSTAMRNHSCKYRGNLAQRG*NCLYGH
Trigger: ATGCCCATAAAGGCAATTCAACCCTCGCTGTGCCAA...ATTTCCTCTGTATTTACATGAGTGATTCCTCATAGCCGTACTTGAATGGTTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS TCA 90 bp ACGGCTCATCATCACTTAAGTCCGAATCTTCATCCACTCCTTCTATaGCTGACTTCTTCCCTTTACAGCAGGATACAATTAATCCGATCA +
Preference number: 5 (lower is better)
Translates to: TAHHHLSPNLHPLLL*LTSSLYSRIQLIRS
Trigger: TGATCGGATTAATTGTATCCTGCTGTAAAGGGAAGAAGTCAGTCATAGAAGGAGTGGATGAAGATTCGGACTTAAGTGATGATGAGCCGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp GAACACATCTTAGAGTCTTGTGGTTTTAGGCAGTTTAACACTTTTTCACGAACTTTAATTTGGGTGCATTaGCTGGCGTCGTCCTCATCC +
Preference number: 5 (lower is better)
Translates to: EHILESCGFRQFNTFSRTLIWVH*LASSSS
Trigger: GGATGAGGACGACGCCAGCAAATGCACCCAAATTAA...AGTTCGTGAAAAAGTGTTAAACTGCCTAAAACCACAAGACTCTAAGATGTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp GCCATTTCTCCAGCTAGAGTGAGGACTTCAACATGTGACTTTGGAAGGATATATAATCCCAAAGTGTACTaGAGCGCCGTTTTAATTTGG +
Preference number: 5 (lower is better)
Translates to: AISPARVRTSTCDFGRIYNPKVY*SAVLIW
Trigger: CCAAATTAAAACGGCGCTCAAGTACACTTTGGGATT...ATATATCCTTCCAAAGTCACATGTTGAAGTCCTCACTCTAGCTGGAGAAATGGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp AGTGGCCAACATCAAGTGTGCTGTGTCTGTAGATTGTTTCTAAATCAGTACATTCCTTTTCCCACTCTGTaGAGTTGTTGTTGTTGGGCA +
Preference number: 5 (lower is better)
Translates to: SGQHQVCCVCRLFLNQYIPFPTL*SCCCWA
Trigger: TGCCCAACAACAACAACTCAACAGAGTGGGAAAAGG...AATGTACTGATTTAGAAACAATCTACAGACACAGCACACTTGATGTTGGCCACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
CDS-3UTR CAA 90 bp AGGAACCATTCAAGTACGGCTATGAGGAATCACTCATGTAAATACAGAGGAAATAAAGGTCGACCATCTTaGCTCTTGGATCGAATCGTC +
Preference number: 5 (lower is better)
Translates to: RNHSSTAMRNHSCKYRGNKGRPS*LLDRIV
Trigger: GACGATTCGATCCAAGAGCAAAGATGGTCGACCTTT...ATTTCCTCTGTATTTACATGAGTGATTCCTCATAGCCGTACTTGAATGGTTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp CATTCAGCGACAGTAATAAGATTCAGGCAGAAAACTGACATACATACAAGCATGACAGCGAGGGTTGAATaGCCTTTATGGGCATCAGAA +
Preference number: 5 (lower is better)
Translates to: HSATVIRFRQKTDIHTSMTARVE*PLWASE
Trigger: TTCTGATGCCCATAAAGGCAATTCAACCCTCGCTGT...CATGCTTGTATGTATGTCAGTTTTCTGCCTGAATCTTATTACTGTCGCTGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000190195.2
CDS-3UTR CAA 90 bp GAACACATCTTAGAGTCTTGTGGTTTTAGGCAGTTTAACACTTTTTCACGAACTACAGCGAGGGTTGAATaGCCTTTATGGGCATCAGAA +
Preference number: 5 (lower is better)
Translates to: EHILESCGFRQFNTFSRTTARVE*PLWASE
Trigger: TTCTGATGCCCATAAAGGCAATTCAACCCTCGCTGT...AGTTCGTGAAAAAGTGTTAAACTGCCTAAAACCACAAGACTCTAAGATGTGTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp AGGAACCATTCAAGTACGGCTATGAGGAATCACTCATGTAAATACAGAGGAAATAATCCCAAAGTGTACTaGAGCGCCGTTTTAATTTGG +
Preference number: 5 (lower is better)
Translates to: RNHSSTAMRNHSCKYRGNNPKVY*SAVLIW
Trigger: CCAAATTAAAACGGCGCTCAAGTACACTTTGGGATT...ATTTCCTCTGTATTTACATGAGTGATTCCTCATAGCCGTACTTGAATGGTTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS-3UTR CAA 90 bp AGTGGCCAACATCAAGTGTGCTGTGTCTGTAGATTGTTTCTAAATCAGTACATTGTGCTTCTAGTGCCTTaGATTAGGTTTAAAGGTAAT +
Preference number: 5 (lower is better)
Translates to: SGQHQVCCVCRLFLNQYIVLLVP*IRFKGN
Trigger: ATTACCTTTAAACCTAATCAAAGGCACTAGAAGCAC...AATGTACTGATTTAGAAACAATCTACAGACACAGCACACTTGATGTTGGCCACT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000095062.10
CDS TCA 72 bp AGAGAGCTGATGGAAAAGGACAGAGCTGCCAGGCCTTaGCCAGTTCCAAGGTCTTCAAACAGGAGCTTCACC +
Preference number: 6 (lower is better)
Translates to: RELMEKDRAARP*PVPRSSNRSFT
Trigger: GGTGAAGCTCCTGTTTGAAGACCTTGGAACTGGTCAAGGCCTGGCAGCTCTGTCCTTTTCCATCAGCTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS GCA 72 bp CACGTCTATCCCTCGCTGGCAAAGGTCGACCATCTTTaGTCTTGGATCGAATCGTCTGAATGTGCTGCTCCA +
Preference number: 6 (lower is better)
Translates to: HVYPSLAKVDHL*SWIESSECAAP
Trigger: TGGAGCAGCACATTCAGACGATTCGATCCAAGAGCAAAGATGGTCGACCTTTGCCAGCGAGGGATAGACGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000186190.2
ENSMUST00000191471.7
CDS CAA 72 bp CAGAGAGCTGATGGAAAAGGACAGAGCTGCCAGGCCTaGACCAGTTCCAAGGTCTTCAAACAGGAGCTTCAC +
Preference number: 6 (lower is better)
Translates to: QRADGKGQSCQA*TSSKVFKQELH
Trigger: GTGAAGCTCCTGTTTGAAGACCTTGGAACTGGTCAAGGCCTGGCAGCTCTGTCCTTTTCCATCAGCTCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS TCA 72 bp AAAGGTCGACCATCTTTGCTCTTGGATCGAATCGTCTaGATGTGCTGCTCCACTTCCTCGATGTCCTCCGTG +
Preference number: 6 (lower is better)
Translates to: KGRPSLLLDRIV*MCCSTSSMSSV
Trigger: CACGGAGGACATCGAGGAAGTGGAGCAGCACATTCAGACGATTCGATCCAAGAGCAAAGATGGTCGACCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS CCA 72 bp TATCCCTCGCTGGCAAAGGTCGACCATCTTTGCTCTTaGATCGAATCGTCTGAATGTGCTGCTCCACTTCCT +
Preference number: 6 (lower is better)
Translates to: YPSLAKVDHLCS*IESSECAAPLP
Trigger: AGGAAGTGGAGCAGCACATTCAGACGATTCGATCCAAGAGCAAAGATGGTCGACCTTTGCCAGCGAGGGATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000186190.2
ENSMUST00000191471.7
CDS CAA 90 bp ACGAGAAGCAGCAGAGCGCAGATCACAACAAATCCCAAAGTGTACTaGAGCGCCGTTTTAATTTGGGTGCATTTGCTGGCGTCGTCCTCA +
Preference number: 6 (lower is better)
Translates to: TRSSRAQITTNPKVY*SAVLIWVHLLASSS
Trigger: TGAGGACGACGCCAGCAAATGCACCCAAATTAAAACGGCGCTCAAGTACACTTTGGGATTTGTTGTGATCTGCGCTCTGCTGCTTCTCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000186096.7
ENSMUST00000191471.7
CDS CAA 90 bp TCAAACAGGAGCTTCACCTTTTCCCACTCTGTTGAGTTGTTGTTGTaGGGCAGATGCAGAGGCACAAAGGCACCAACGAGAAGCAGCAGA +
Preference number: 6 (lower is better)
Translates to: SNRSFTFSHSVELLL*GRCRGTKAPTRSSR
Trigger: TCTGCTGCTTCTCGTTGGTGCCTTTGTGCCTCTGCATCTGCCCAACAACAACAACTCAACAGAGTGGGAAAAGGTGAAGCTCCTGTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS CAA 90 bp TCTTCAAACAGGAGCTTCACCTTTTCCCACTCTGTTGAGTTGTTGTaGTTGGGCAGATGCAGAGGCACAAAGGCACCAACGAGAAGCAGC +
Preference number: 6 (lower is better)
Translates to: SSNRSFTFSHSVELL*LGRCRGTKAPTRSS
Trigger: GCTGCTTCTCGTTGGTGCCTTTGTGCCTCTGCATCTGCCCAACAACAACAACTCAACAGAGTGGGAAAAGGTGAAGCTCCTGTTTGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS CAA 90 bp AGGTCTTCAAACAGGAGCTTCACCTTTTCCCACTCTGTTGAGTTGTaGTTGTTGGGCAGATGCAGAGGCACAAAGGCACCAACGAGAAGC +
Preference number: 6 (lower is better)
Translates to: RSSNRSFTFSHSVEL*LLGRCRGTKAPTRS
Trigger: GCTTCTCGTTGGTGCCTTTGTGCCTCTGCATCTGCCCAACAACAACAACTCAACAGAGTGGGAAAAGGTGAAGCTCCTGTTTGAAGACCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS CAA 90 bp CCAAGGTCTTCAAACAGGAGCTTCACCTTTTCCCACTCTGTTGAGTaGTTGTTGTTGGGCAGATGCAGAGGCACAAAGGCACCAACGAGA +
Preference number: 6 (lower is better)
Translates to: PRSSNRSFTFSHSVE*LLLGRCRGTKAPTR
Trigger: TCTCGTTGGTGCCTTTGTGCCTCTGCATCTGCCCAACAACAACAACTCAACAGAGTGGGAAAAGGTGAAGCTCCTGTTTGAAGACCTTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS CAA 72 bp AGCTTCACCTTTTCCCACTCTGTTGAGTTGTTGTTGTaGGGCAGATGCAGAGGCACAAAGGCACCAACGAGA +
Preference number: 6 (lower is better)
Translates to: SFTFSHSVELLL*GRCRGTKAPTR
Trigger: TCTCGTTGGTGCCTTTGTGCCTCTGCATCTGCCCAACAACAACAACTCAACAGAGTGGGAAAAGGTGAAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS CAA 72 bp AACAGGAGCTTCACCTTTTCCCACTCTGTTGAGTTGTaGTTGTTGGGCAGATGCAGAGGCACAAAGGCACCA +
Preference number: 6 (lower is better)
Translates to: NRSFTFSHSVEL*LLGRCRGTKAP
Trigger: TGGTGCCTTTGTGCCTCTGCATCTGCCCAACAACAACAACTCAACAGAGTGGGAAAAGGTGAAGCTCCTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS CAA 90 bp CAGTTCCAAGGTCTTCAAACAGGAGCTTCACCTTTTCCCACTCTGTaGAGTTGTTGTTGTTGGGCAGATGCAGAGGCACAAAGGCACCAA +
Preference number: 6 (lower is better)
Translates to: QFQGLQTGASPFPTL*SCCCWADAEAQRHQ
Trigger: TTGGTGCCTTTGTGCCTCTGCATCTGCCCAACAACAACAACTCAACAGAGTGGGAAAAGGTGAAGCTCCTGTTTGAAGACCTTGGAACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS CAA 72 bp AGCAGAGCGCAGATCACAACAAATCCCAAAGTGTACTaGAGCGCCGTTTTAATTTGGGTGCATTTGCTGGCG +
Preference number: 6 (lower is better)
Translates to: SRAQITTNPKVY*SAVLIWVHLLA
Trigger: CGCCAGCAAATGCACCCAAATTAAAACGGCGCTCAAGTACACTTTGGGATTTGTTGTGATCTGCGCTCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000186096.7
ENSMUST00000191471.7
CDS CAA 72 bp GGTCTTCAAACAGGAGCTTCACCTTTTCCCACTCTGTaGAGTTGTTGTTGTTGGGCAGATGCAGAGGCACAA +
Preference number: 6 (lower is better)
Translates to: GLQTGASPFPTL*SCCCWADAEAQ
Trigger: TTGTGCCTCTGCATCTGCCCAACAACAACAACTCAACAGAGTGGGAAAAGGTGAAGCTCCTGTTTGAAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS CAA 90 bp GCAGATCACAACAAATCCCAAAGTGTACTTGAGCGCCGTTTTAATTaGGGTGCATTTGCTGGCGTCGTCCTCATCCTTCTCTTCGTAGTA +
Preference number: 6 (lower is better)
Translates to: ADHNKSQSVLERRFN*GAFAGVVLILLFVV
Trigger: TACTACGAAGAGAAGGATGAGGACGACGCCAGCAAATGCACCCAAATTAAAACGGCGCTCAAGTACACTTTGGGATTTGTTGTGATCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000186096.7
ENSMUST00000191471.7
CDS TCA 72 bp AAAGGTCGACCATCTTTGCTCTTGGATCGAATCGTCTaGATGTGCTGCTCCACTTCCTCGATGTCCTTGAAT +
Preference number: 6 (lower is better)
Translates to: KGRPSLLLDRIV*MCCSTSSMSLN
Trigger: ATTCAAGGACATCGAGGAAGTGGAGCAGCACATTCAGACGATTCGATCCAAGAGCAAAGATGGTCGACCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000186190.2
CDS CAA 72 bp AACAAATCCCAAAGTGTACTTGAGCGCCGTTTTAATTaGGGTGCATTTGCTGGCGTCGTCCTCATCCTTCTC +
Preference number: 6 (lower is better)
Translates to: NKSQSVLERRFN*GAFAGVVLILL
Trigger: GAGAAGGATGAGGACGACGCCAGCAAATGCACCCAAATTAAAACGGCGCTCAAGTACACTTTGGGATTTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000186096.7
ENSMUST00000191471.7
CDS TCA 72 bp ATGAGCAGGAGGATCATGCAGAGAAATAAGAGTGCCTaGGGCCTGGTTCGCCCTCTTCTGATTTTATATAAC +
Preference number: 6 (lower is better)
Translates to: MSRRIMQRNKSA*GLVRPLLILYN
Trigger: GTTATATAAAATCAGAAGAGGGCGAACCAGGCCTCAGGCACTCTTATTTCTCTGCATGATCCTCCTGCTCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000190195.2
ENSMUST00000191471.7
CDS TCA 72 bp GGCATCTGCGTCACATCTTTTTGGCACAGCGAGGGTTaGATTGCCTTTATGGGCATCAGAAGTTATATTGCT +
Preference number: 6 (lower is better)
Translates to: GICVTSFWHSEG*IAFMGIRSYIA
Trigger: AGCAATATAACTTCTGATGCCCATAAAGGCAATTCAACCCTCGCTGTGCCAAAAAGATGTGACGCAGATGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000190195.2
ENSMUST00000191471.7
CDS GCA 72 bp CTGCGTCACATCTTTTTGGCACAGCGAGGGTTGAATTaGCTTTATGGGCATCAGAAGTTATATTGCTCTCTA +
Preference number: 6 (lower is better)
Translates to: LRHIFLAQRGLN*LYGHQKLYCSL
Trigger: TAGAGAGCAATATAACTTCTGATGCCCATAAAGGCAATTCAACCCTCGCTGTGCCAAAAAGATGTGACGCAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000190195.2
ENSMUST00000191471.7
CDS GCA 72 bp GAACACCACGAGAAAGGCCCAGTTACCAAAATAGTATaGAGCACTGAAGAACCAGAACTTGTGGAGGAAAAT +
Preference number: 6 (lower is better)
Translates to: EHHEKGPVTKIV*STEEPELVEEN
Trigger: ATTTTCCTCCACAAGTTCTGGTTCTTCAGTGCTGCATACTATTTTGGTAACTGGGCCTTTCTCGTGGTGTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS CAA 72 bp TCTGCGTCACATCTTTTTGGCACAGCGAGGGTTGAATaGCCTTTATGGGCATCAGAAGTTATATTGCTCTCT +
Preference number: 6 (lower is better)
Translates to: SASHLFGTARVE*PLWASEVILLS
Trigger: AGAGAGCAATATAACTTCTGATGCCCATAAAGGCAATTCAACCCTCGCTGTGCCAAAAAGATGTGACGCAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000095062.10
ENSMUST00000190195.2
ENSMUST00000191471.7
CDS GCA 72 bp ACTTACCACGAGAAAGGCCCAGTTACCAAAATAGTATaGAGCACTGAAGAACCAGAACTTGTGGAGGAAAAT +
Preference number: 6 (lower is better)
Translates to: TYHEKGPVTKIV*STEEPELVEEN
Trigger: ATTTTCCTCCACAAGTTCTGGTTCTTCAGTGCTGCATACTATTTTGGTAACTGGGCCTTTCTCGTGGTAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000190195.2
CDS CAA 72 bp ACTGTTTGTAACAACGGCAAAAGCATGTTCAGTGGATaGCTCAGGTTAGTTCCGAAGATGATGAAACCCGAA +
Preference number: 6 (lower is better)
Translates to: TVCNNGKSMFSG*LRLVPKMMKPE
Trigger: TTCGGGTTTCATCATCTTCGGAACTAACCTGAGCAATCCACTGAACATGCTTTTGCCGTTGTTACAAACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS TCA 72 bp CCGAAGATGATGAAACCCGAATCTATTCCTGCTGAATaGAGAGCTTTATCCAAATTTGACAGGAAGAGAGAA +
Preference number: 6 (lower is better)
Translates to: PKMMKPESIPAE*RALSKFDRKRE
Trigger: TTCTCTCTTCCTGTCAAATTTGGATAAAGCTCTTCATTCAGCAGGAATAGATTCGGGTTTCATCATCTTCGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7
CDS TCA 72 bp CATCACTTAAGTCCGAATCTTCATCCACTCCTTCTATaGCTGACTTCTTCCCTTTACAGCAGGATACAATTA +
Preference number: 6 (lower is better)
Translates to: HHLSPNLHPLLL*LTSSLYSRIQL
Trigger: TAATTGTATCCTGCTGTAAAGGGAAGAAGTCAGTCATAGAAGGAGTGGATGAAGATTCGGACTTAAGTGATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000095062.10
ENSMUST00000191471.7