Pregenerated sensors for LLPH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020224Ensembl transcript IDs: ENSMUST00000020444.16, ENSMUST00000130198.3, ENSMUST00000220107.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGCCTTGAACTCACAGAGATCCACCTGCCTCCACCTCTTGAGTGCTaGGATGAAAGGGGTGCACCACCACGCCTGTCTCCCTTGCCAGTC | + |
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Preference number: 1 (lower is better) Translates to: GLELTEIHLPPPLEC*DERGAPPRLSPLPV Trigger: GACTGGCAAGGGAGACAGGCGTGGTGGTGCACCCCTTTCATCCCAGCACTCAAGAGGTGGAGGCAGGTGGATCTCTGTGAGTTCAAGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 ENSMUST00000220107.2 |
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| 3UTR TCA 90 bp | GTGCCAGTGACGGCCACAAGAGGGCGCATCCTTGGGAGTTGGTTTTaGGCCACCCAACAAGAAACAGAAGTTGACTCTTCCTCAGGCTCT | + |
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Preference number: 1 (lower is better) Translates to: VPVTATRGRILGSWF*ATQQETEVDSSSGS Trigger: AGAGCCTGAGGAAGAGTCAACTTCTGTTTCTTGTTGGGTGGCTCAAAACCAACTCCCAAGGATGCGCCCTCTTGTGGCCGTCACTGGCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| 3UTR TCA 90 bp | ACCGAAGGACTCCCCTCGTCTCCACTTCTATTCCCATTTAGCTCCTaGAAGATTACAAGTGAGGGCACCAAGGCAGTCTCCAGGCAGAAA | + |
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Preference number: 1 (lower is better) Translates to: TEGLPSSPLLFPFSS*KITSEGTKAVSRQK Trigger: TTTCTGCCTGGAGACTGCCTTGGTGCCCTCACTTGTAATCTTTCAGGAGCTAAATGGGAATAGAAGTGGAGACGAGGGGAGTCCTTCGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220107.2 |
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| 3UTR GCA 90 bp | GAGCTATCATGTGGTTGTTGTGAATTGTTACTTAGGACCTCTGTTTaGTCTGGTCAATCCCACTTGCTCCGGTCAGCCCGATCGCTCTGG | + |
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Preference number: 1 (lower is better) Translates to: ELSCGCCELLLRTSV*SGQSHLLRSARSLW Trigger: CCAGAGCGATCGGGCTGACCGGAGCAAGTGGGATTGACCAGAGCAAACAGAGGTCCTAAGTAACAATTCACAACAACCACATGATAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR GCA 90 bp | AGGGTGTCAGATCTCATTACAGGTAGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCAGGACTTTCAGAAGAGCAGTCAGTGCTC | + |
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Preference number: 1 (lower is better) Translates to: RVSDLITGSCEPPCG*WDLNSGLSEEQSVL Trigger: GAGCACTGACTGCTCTTCTGAAAGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACTACCTGTAATGAGATCTGACACCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR CCA 90 bp | TTTGCTTGTATTTTCAAGACACGGTTTCTCTGTGTAATGGAGCCCTaGGTGCTTTGGAATTGCTCTGTAGACCAGGCTGGCCTTGAACTC | + |
|
Preference number: 1 (lower is better) Translates to: FACIFKTRFLCVMEP*VLWNCSVDQAGLEL Trigger: GAGTTCAAGGCCAGCCTGGTCTACAGAGCAATTCCAAAGCACCCAGGGCTCCATTACACAGAGAAACCGTGTCTTGAAAATACAAGCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 ENSMUST00000220107.2 |
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| 3UTR GCA 90 bp | GTGAATTGTTACTTAGGACCTCTGTTTGCTCTGGTCAATCCCACTTaGTCCGGTCAGCCCGATCGCTCTGGCCCAAAGATTTATTATAAA | + |
|
Preference number: 1 (lower is better) Translates to: VNCYLGPLFALVNPT*SGQPDRSGPKIYYK Trigger: TTTATAATAAATCTTTGGGCCAGAGCGATCGGGCTGACCGGAGCAAGTGGGATTGACCAGAGCAAACAGAGGTCCTAAGTAACAATTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR CCA 90 bp | GTGTCAGATCTCATTACAGGTAGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCAGGACTTTCAGAAGAGCAGTCAGTGCTCTTA | + |
|
Preference number: 1 (lower is better) Translates to: VSDLITGSCEPPCGC*DLNSGLSEEQSVLL Trigger: TAAGAGCACTGACTGCTCTTCTGAAAGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACTACCTGTAATGAGATCTGACAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR CCA 90 bp | AGATCCACTGATGGCCTTTTTAAGACTATTTTAGTTATTAGTGCGTaGGAAGGTGTGCATAGAATGTCGGTGCCAGTGACGGCCACAAGA | + |
|
Preference number: 1 (lower is better) Translates to: RSTDGLFKTILVISA*EGVHRMSVPVTATR Trigger: TCTTGTGGCCGTCACTGGCACCGACATTCTATGCACACCTTCCCACGCACTAATAACTAAAATAGTCTTAAAAAGGCCATCAGTGGATCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| 3UTR TCA 90 bp | TTTGAACTCAGGACTTTCAGAAGAGCAGTCAGTGCTCTTACCCGCTaGGCCATCTCACCAGCCCTAGACTTTATCATTATTTTAAGCTAC | + |
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Preference number: 1 (lower is better) Translates to: FELRTFRRAVSALTR*AISPALDFIIILSY Trigger: GTAGCTTAAAATAATGATAAAGTCTAGGGCTGGTGAGATGGCTCAGCGGGTAAGAGCACTGACTGCTCTTCTGAAAGTCCTGAGTTCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR GCA 90 bp | AGCCCGATCGCTCTGGCCCAAAGATTTATTATAAATAACTACAGTTaGTGTCCTCAGACACACCAGAAGAGGGTGTCAGATCTCATTACA | + |
|
Preference number: 1 (lower is better) Translates to: SPIALAQRFIINNYS*CPQTHQKRVSDLIT Trigger: TGTAATGAGATCTGACACCCTCTTCTGGTGTGTCTGAGGACAGCAACTGTAGTTATTTATAATAAATCTTTGGGCCAGAGCGATCGGGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR-3UTR GCA 90 bp | GAAAGGGGTGCACCACCACGCCTGTCTCCCTTGCCAGTCTTTAAGGTCTACCAGCCTCCACCTCTTGAGTaGTGGGATGAAAGGGGTGCA | + |
|
Preference number: 2 (lower is better) Translates to: ERGAPPRLSPLPVFKVYQPPPLE*WDERGA Trigger: TGCACCCCTTTCATCCCAGCACTCAAGAGGTGGAGG...CTGGTAGACCTTAAAGACTGGCAAGGGAGACAGGCGTGGTGGTGCACCCCTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220107.2 |
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| 3UTR CAA 90 bp | CCTTGCCAGTCTTTAAGGTCTACCAGGCCAGGCCCTTCGCGGCCTTaGCTCTGCTTTTCCCTCGTTTCTTTTCTCTCTTGGCCTTCAGTC | + |
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Preference number: 2 (lower is better) Translates to: PCQSLRSTRPGPSRP*LCFSLVSFLSWPSV Trigger: GACTGAAGGCCAAGAGAGAAAAGAAACGAGGGAAAAGCAGAGCAAAGGCCGCGAAGGGCCTGGCCTGGTAGACCTTAAAGACTGGCAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220107.2 |
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| 3UTR-3UTR CCA 90 bp | GAAAGGGGTGCACCACCACGCCTGTCTCCCTTGCCAGTCTTTAAGGTCTACCAGCTTTTTCTTTGCCTCTaGTTCATCCACACTGGGTAC | + |
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Preference number: 2 (lower is better) Translates to: ERGAPPRLSPLPVFKVYQLFLCL*FIHTGY Trigger: GTACCCAGTGTGGATGAACCAGAGGCAAAGAAAAAG...CTGGTAGACCTTAAAGACTGGCAAGGGAGACAGGCGTGGTGGTGCACCCCTTTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220107.2 |
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| 3UTR-3UTR GCA 90 bp | ATGGAGCCCTGGGTGCTTTGGAATTGCTCTGTAGACCAGGCTGGCCTTGAACTCGCTTACAATACTCAGTaGCAGGCAGTATCCAATCAC | + |
|
Preference number: 2 (lower is better) Translates to: MEPWVLWNCSVDQAGLELAYNTQ*QAVSNH Trigger: GTGATTGGATACTGCCTGGCACTGAGTATTGTAAGC...GAGTTCAAGGCCAGCCTGGTCTACAGAGCAATTCCAAAGCACCCAGGGCTCCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| 3UTR-3UTR TCA 90 bp | TGTTACTTAGGACCTCTGTTTGCTCTGGTCAATCCCACTTGCTCCGGTCAGCCCACAAGAAACAGAAGTTaGCTCTTCCTCAGGCTCTTG | + |
|
Preference number: 2 (lower is better) Translates to: CYLGPLFALVNPTCSGQPTRNRS*LFLRLL Trigger: CAAGAGCCTGAGGAAGAGTCAACTTCTGTTTCTTGT...GGGCTGACCGGAGCAAGTGGGATTGACCAGAGCAAACAGAGGTCCTAAGTAACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR CAA 90 bp | GATCTCATTACAGGTAGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCAGGACTTTCAGAAGAGCAGTCAGTGCTCTTACCCGCT | + |
|
Preference number: 2 (lower is better) Translates to: DLITGSCEPPCGCWD*NSGLSEEQSVLLPA Trigger: AGCGGGTAAGAGCACTGACTGCTCTTCTGAAAGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACTACCTGTAATGAGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR-3UTR GCA 90 bp | CCCAACAAGAAACAGAAGTTGACTCTTCCTCAGGCTCTTGATACCCTATTTTTGCCTCCACCTCTTGAGTaGTGGGATGAAAGGGGTGCA | + |
|
Preference number: 2 (lower is better) Translates to: PNKKQKLTLPQALDTLFLPPPLE*WDERGA Trigger: TGCACCCCTTTCATCCCAGCACTCAAGAGGTGGAGG...CAAAAATAGGGTATCAAGAGCCTGAGGAAGAGTCAACTTCTGTTTCTTGTTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| 3UTR-3UTR GCA 90 bp | GTATATGAGTACACTGTATCTGTACAGATGGTTGTGAGCTATCATGTGGTTGTTCCTCCACCTCTTGAGTaGTGGGATGAAAGGGGTGCA | + |
|
Preference number: 2 (lower is better) Translates to: VYEYTVSVQMVVSYHVVVPPPLE*WDERGA Trigger: TGCACCCCTTTCATCCCAGCACTCAAGAGGTGGAGG...AACAACCACATGATAGCTCACAACCATCTGTACAGATACAGTGTACTCATATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR-3UTR TCA 90 bp | GAGGATCACTTGTTTTACACAATAATCTATACATGTAATAGTCCACCTGAGCTATCTTCCTCAGGCTCTTaGTACCCTATTTTTGAATAT | + |
|
Preference number: 2 (lower is better) Translates to: EDHLFYTIIYTCNSPPELSSSGS*YPIFEY Trigger: ATATTCAAAAATAGGGTATCAAGAGCCTGAGGAAGA...TAGCTCAGGTGGACTATTACATGTATAGATTATTGTGTAAAACAAGTGATCCTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR GCA 72 bp | GGGATGAAAGGGGTGCACCACCACGCCTGTCTCCCTTaGCAGTCTTTAAGGTCTACCAGGCCAGGCCCTTCG | + |
|
Preference number: 3 (lower is better) Translates to: GMKGVHHHACLP*QSLRSTRPGPS Trigger: CGAAGGGCCTGGCCTGGTAGACCTTAAAGACTGGCAAGGGAGACAGGCGTGGTGGTGCACCCCTTTCATCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220107.2 |
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| 3UTR TCA 72 bp | GTGCGTGGGAAGGTGTGCATAGAATGTCGGTGCCAGTaGCGGCCACAAGAGGGCGCATCCTTGGGAGTTGGT | + |
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Preference number: 3 (lower is better) Translates to: VRGKVCIECRCQ*RPQEGASLGVG Trigger: ACCAACTCCCAAGGATGCGCCCTCTTGTGGCCGTCACTGGCACCGACATTCTATGCACACCTTCCCACGCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| 3UTR GCA 72 bp | TACTTAGGACCTCTGTTTGCTCTGGTCAATCCCACTTaGTCCGGTCAGCCCGATCGCTCTGGCCCAAAGATT | + |
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Preference number: 3 (lower is better) Translates to: YLGPLFALVNPT*SGQPDRSGPKI Trigger: AATCTTTGGGCCAGAGCGATCGGGCTGACCGGAGCAAGTGGGATTGACCAGAGCAAACAGAGGTCCTAAGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR-3UTR CAA 90 bp | GAAAGGGGTGCACCACCACGCCTGTCTCCCTTGCCAGTCTTTAAGGTCTACCAGCCATTTTCATGTCATTaGAGGGCAGAAGGAGCAAGC | + |
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Preference number: 3 (lower is better) Translates to: ERGAPPRLSPLPVFKVYQPFSCH*RAEGAS Trigger: GCTTGCTCCTTCTGCCCTCAAATGACATGAAAATGG...CTGGTAGACCTTAAAGACTGGCAAGGGAGACAGGCGTGGTGGTGCACCCCTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220107.2 |
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| 3UTR CCA 72 bp | ACACGGTTTCTCTGTGTAATGGAGCCCTGGGTGCTTTaGAATTGCTCTGTAGACCAGGCTGGCCTTGAACTC | + |
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Preference number: 3 (lower is better) Translates to: TRFLCVMEPWVL*NCSVDQAGLEL Trigger: GAGTTCAAGGCCAGCCTGGTCTACAGAGCAATTCCAAAGCACCCAGGGCTCCATTACACAGAGAAACCGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 ENSMUST00000220107.2 |
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| 3UTR-3UTR CAA 90 bp | TGTGAATTGTTACTTAGGACCTCTGTTTGCTCTGGTCAATCCCACTTGCTCCGGCTGGGTGCTTTGGAATaGCTCTGTAGACCAGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: CELLLRTSVCSGQSHLLRLGALE*LCRPGW Trigger: CCAGCCTGGTCTACAGAGCAATTCCAAAGCACCCAG...CCGGAGCAAGTGGGATTGACCAGAGCAAACAGAGGTCCTAAGTAACAATTCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR TCA 72 bp | CTCCCCTCGTCTCCACTTCTATTCCCATTTAGCTCCTaGAAGATTACAAGTGAGGGCACCAAGGCAGTCTCC | + |
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Preference number: 3 (lower is better) Translates to: LPSSPLLFPFSS*KITSEGTKAVS Trigger: GGAGACTGCCTTGGTGCCCTCACTTGTAATCTTTCAGGAGCTAAATGGGAATAGAAGTGGAGACGAGGGGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220107.2 |
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| 3UTR TCA 72 bp | CAGGTAGTTGTGAGCCACCATGTGGTTGCTGGGATTTaGACTCAGGACTTTCAGAAGAGCAGTCAGTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: QVVVSHHVVAGI*TQDFQKSSQCS Trigger: AGAGCACTGACTGCTCTTCTGAAAGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACTACCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR GCA 72 bp | TGTGGTTGTTGTGAATTGTTACTTAGGACCTCTGTTTaGTCTGGTCAATCCCACTTGCTCCGGTCAGCCCGA | + |
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Preference number: 3 (lower is better) Translates to: CGCCELLLRTSV*SGQSHLLRSAR Trigger: TCGGGCTGACCGGAGCAAGTGGGATTGACCAGAGCAAACAGAGGTCCTAAGTAACAATTCACAACAACCACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR-3UTR CAA 90 bp | GTGCCAGGCAGTATCCAATCACAACTTCAGCATAACATTCTTTCATCACCAAAGCTGGGTGCTTTGGAATaGCTCTGTAGACCAGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: VPGSIQSQLQHNILSSPKLGALE*LCRPGW Trigger: CCAGCCTGGTCTACAGAGCAATTCCAAAGCACCCAG...CTTTGGTGATGAAAGAATGTTATGCTGAAGTTGTGATTGGATACTGCCTGGCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| 3UTR-3UTR CAA 90 bp | GTGCCAGGCAGTATCCAATCACAACTTCAGCATAACATTCTTTCATCACCAAAGGGAGCCCTGGGTGCTTaGGAATTGCTCTGTAGACCA | + |
|
Preference number: 3 (lower is better) Translates to: VPGSIQSQLQHNILSSPKGALGA*ELLCRP Trigger: TGGTCTACAGAGCAATTCCAAAGCACCCAGGGCTCC...CTTTGGTGATGAAAGAATGTTATGCTGAAGTTGTGATTGGATACTGCCTGGCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| 3UTR GCA 72 bp | GATCTCATTACAGGTAGTTGTGAGCCACCATGTGGTTaGTGGGATTTGAACTCAGGACTTTCAGAAGAGCAG | + |
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Preference number: 3 (lower is better) Translates to: DLITGSCEPPCG*WDLNSGLSEEQ Trigger: CTGCTCTTCTGAAAGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACTACCTGTAATGAGATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR CCA 72 bp | CTCATTACAGGTAGTTGTGAGCCACCATGTGGTTGCTaGGATTTGAACTCAGGACTTTCAGAAGAGCAGTCA | + |
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Preference number: 3 (lower is better) Translates to: LITGSCEPPCGC*DLNSGLSEEQS Trigger: TGACTGCTCTTCTGAAAGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACTACCTGTAATGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| 3UTR-3UTR CAA 90 bp | CCATTTTCATGTCATTTGAGGGCAGAAGGAGCAAGCTTTACTAATATGACTAAAACCTGCCTCCACCTCTaGAGTGCTGGGATGAAAGGG | + |
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Preference number: 3 (lower is better) Translates to: PFSCHLRAEGASFTNMTKTCLHL*SAGMKG Trigger: CCCTTTCATCCCAGCACTCAAGAGGTGGAGGCAGGT...TTTAGTCATATTAGTAAAGCTTGCTCCTTCTGCCCTCAAATGACATGAAAATGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220107.2 |
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| 3UTR-3UTR CAA 90 bp | GGCAGTATCCAATCACAACTTCAGCATAACATTCTTTCATCACCAAAGAGATTTGGAGCCCTGGGTGCTTaGGAATTGCTCTGTAGACCA | + |
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Preference number: 3 (lower is better) Translates to: GSIQSQLQHNILSSPKRFGALGA*ELLCRP Trigger: TGGTCTACAGAGCAATTCCAAAGCACCCAGGGCTCC...AAATCTCTTTGGTGATGAAAGAATGTTATGCTGAAGTTGTGATTGGATACTGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| 3UTR CCA 72 bp | GATGGCCTTTTTAAGACTATTTTAGTTATTAGTGCGTaGGAAGGTGTGCATAGAATGTCGGTGCCAGTGACG | + |
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Preference number: 3 (lower is better) Translates to: DGLFKTILVISA*EGVHRMSVPVT Trigger: CGTCACTGGCACCGACATTCTATGCACACCTTCCCACGCACTAATAACTAAAATAGTCTTAAAAAGGCCATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| 3UTR GCA 72 bp | AATAGTTATAACCACATCAATGCTTACAATACTCAGTaGCAGGCAGTATCCAATCACAACTTCAGCATAACA | + |
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Preference number: 3 (lower is better) Translates to: NSYNHINAYNTQ*QAVSNHNFSIT Trigger: TGTTATGCTGAAGTTGTGATTGGATACTGCCTGGCACTGAGTATTGTAAGCATTGATGTGGTTATAACTATT 38% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| 3UTR TCA 72 bp | CAACAAGAAACAGAAGTTGACTCTTCCTCAGGCTCTTaGTACCCTATTTTTGAATATGATAATGTAATAGCT | + |
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Preference number: 3 (lower is better) Translates to: QQETEVDSSSGS*YPIFEYDNVIA Trigger: AGCTATTACATTATCATATTCAAAAATAGGGTATCAAGAGCCTGAGGAAGAGTCAACTTCTGTTTCTTGTTG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| CDS-3UTR GCA 90 bp | GAAAGGGGTGCACCACCACGCCTGTCTCCCTTGCCAGTCTTTAAGGTCTACCAGCGCCCTTCCTCACACTaGATTTTCTCCTGGCGAGGT | + |
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Preference number: 4 (lower is better) Translates to: ERGAPPRLSPLPVFKVYQRPSSH*IFSWRG Trigger: ACCTCGCCAGGAGAAAATGCAGTGTGAGGAAGGGCG...CTGGTAGACCTTAAAGACTGGCAAGGGAGACAGGCGTGGTGGTGCACCCCTTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220107.2 |
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| CDS-3UTR GCA 90 bp | ATGGAGCCCTGGGTGCTTTGGAATTGCTCTGTAGACCAGGCTGGCCTTGAACTCCGCCCTTCCTCACACTaGATTTTCTCCTGGCGAGGT | + |
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Preference number: 4 (lower is better) Translates to: MEPWVLWNCSVDQAGLELRPSSH*IFSWRG Trigger: ACCTCGCCAGGAGAAAATGCAGTGTGAGGAAGGGCG...GAGTTCAAGGCCAGCCTGGTCTACAGAGCAATTCCAAAGCACCCAGGGCTCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 ENSMUST00000220107.2 |
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| 3UTR CAA 72 bp | TTACTTAGGACCTCTGTTTGCTCTGGTCAATCCCACTaGCTCCGGTCAGCCCGATCGCTCTGGCCCAAAGAT | + |
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Preference number: 4 (lower is better) Translates to: LLRTSVCSGQSH*LRSARSLWPKD Trigger: ATCTTTGGGCCAGAGCGATCGGGCTGACCGGAGCAAGTGGGATTGACCAGAGCAAACAGAGGTCCTAAGTAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| CDS-3UTR CCA 90 bp | GCTGGGATGAAAGGGGTGCACCACCACGCCTGTCTCCCTTGCCAGTCTTTAAGGCTTTTTCTTTGCCTCTaGTTCATCCACACTGGGTAC | + |
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Preference number: 4 (lower is better) Translates to: AGMKGVHHHACLPCQSLRLFLCL*FIHTGY Trigger: GTACCCAGTGTGGATGAACCAGAGGCAAAGAAAAAG...CCTTAAAGACTGGCAAGGGAGACAGGCGTGGTGGTGCACCCCTTTCATCCCAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| CDS-3UTR GCA 90 bp | TGGGATTTGAACTCAGGACTTTCAGAAGAGCAGTCAGTGCTCTTACCCGCTGAGCGCCCTTCCTCACACTaGATTTTCTCCTGGCGAGGT | + |
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Preference number: 4 (lower is better) Translates to: WDLNSGLSEEQSVLLPAERPSSH*IFSWRG Trigger: ACCTCGCCAGGAGAAAATGCAGTGTGAGGAAGGGCG...CTCAGCGGGTAAGAGCACTGACTGCTCTTCTGAAAGTCCTGAGTTCAAATCCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| CDS-3UTR GCA 90 bp | GAGGGCGCATCCTTGGGAGTTGGTTTTGAGCCACCCAACAAGAAACAGAAGTTGTCGCGGCCTTTGCTCTaGTTTTCCCTCGTTTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: EGASLGVGFEPPNKKQKLSRPLL*FSLVSF Trigger: AAAAGAAACGAGGGAAAAGCAGAGCAAAGGCCGCGA...CAACTTCTGTTTCTTGTTGGGTGGCTCAAAACCAACTCCCAAGGATGCGCCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| 3UTR CAA 72 bp | ACAGGTAGTTGTGAGCCACCATGTGGTTGCTGGGATTaGAACTCAGGACTTTCAGAAGAGCAGTCAGTGCTC | + |
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Preference number: 4 (lower is better) Translates to: TGSCEPPCGCWD*NSGLSEEQSVL Trigger: GAGCACTGACTGCTCTTCTGAAAGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACTACCTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| CDS-3UTR CCA 90 bp | CCCAACAAGAAACAGAAGTTGACTCTTCCTCAGGCTCTTGATACCCTATTTTTGCACTGCATTTTCTCCTaGCGAGGTTTGGCTACCACC | + |
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Preference number: 4 (lower is better) Translates to: PNKKQKLTLPQALDTLFLHCIFS*RGLATT Trigger: GGTGGTAGCCAAACCTCGCCAGGAGAAAATGCAGTG...CAAAAATAGGGTATCAAGAGCCTGAGGAAGAGTCAACTTCTGTTTCTTGTTGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| CDS-3UTR CCA 90 bp | TGTGAATTGTTACTTAGGACCTCTGTTTGCTCTGGTCAATCCCACTTGCTCCGGCTTTTTCTTTGCCTCTaGTTCATCCACACTGGGTAC | + |
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Preference number: 4 (lower is better) Translates to: CELLLRTSVCSGQSHLLRLFLCL*FIHTGY Trigger: GTACCCAGTGTGGATGAACCAGAGGCAAAGAAAAAG...CCGGAGCAAGTGGGATTGACCAGAGCAAACAGAGGTCCTAAGTAACAATTCACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| CDS-3UTR CCA 90 bp | CCAGGCAGTATCCAATCACAACTTCAGCATAACATTCTTTCATCACCAAAGAGACACTGCATTTTCTCCTaGCGAGGTTTGGCTACCACC | + |
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Preference number: 4 (lower is better) Translates to: PGSIQSQLQHNILSSPKRHCIFS*RGLATT Trigger: GGTGGTAGCCAAACCTCGCCAGGAGAAAATGCAGTG...TCTCTTTGGTGATGAAAGAATGTTATGCTGAAGTTGTGATTGGATACTGCCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| CDS-3UTR GCA 90 bp | CCCAACAAGAAACAGAAGTTGACTCTTCCTCAGGCTCTTGATACCCTATTTTTGTCGCGGCCTTTGCTCTaGTTTTCCCTCGTTTCTTTT | + |
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Preference number: 4 (lower is better) Translates to: PNKKQKLTLPQALDTLFLSRPLL*FSLVSF Trigger: AAAAGAAACGAGGGAAAAGCAGAGCAAAGGCCGCGA...CAAAAATAGGGTATCAAGAGCCTGAGGAAGAGTCAACTTCTGTTTCTTGTTGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| CDS-3UTR CCA 90 bp | CCATTTTCATGTCATTTGAGGGCAGAAGGAGCAAGCTTTACTAATATGACTAAACACTGCATTTTCTCCTaGCGAGGTTTGGCTACCACC | + |
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Preference number: 4 (lower is better) Translates to: PFSCHLRAEGASFTNMTKHCIFS*RGLATT Trigger: GGTGGTAGCCAAACCTCGCCAGGAGAAAATGCAGTG...TTTAGTCATATTAGTAAAGCTTGCTCCTTCTGCCCTCAAATGACATGAAAATGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220107.2 |
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| 3UTR CAA 72 bp | ACAGATGGTTGTGAGCTATCATGTGGTTGTTGTGAATaGTTACTTAGGACCTCTGTTTGCTCTGGTCAATCC | + |
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Preference number: 4 (lower is better) Translates to: TDGCELSCGCCE*LLRTSVCSGQS Trigger: GGATTGACCAGAGCAAACAGAGGTCCTAAGTAACAATTCACAACAACCACATGATAGCTCACAACCATCTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020444.16 |
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| CDS-3UTR CAA 90 bp | GCTGGGATGAAAGGGGTGCACCACCACGCCTGTCTCCCTTGCCAGTCTTTAAGGATACTCTTCAGTCTGTaGAGCTCCCTTGGCGCATTC | + |
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Preference number: 5 (lower is better) Translates to: AGMKGVHHHACLPCQSLRILFSL*SSLGAF Trigger: GAATGCGCCAAGGGAGCTCAACAGACTGAAGAGTAT...CCTTAAAGACTGGCAAGGGAGACAGGCGTGGTGGTGCACCCCTTTCATCCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 ENSMUST00000220107.2 |
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| CDS-3UTR CAA 90 bp | ATGGAGCCCTGGGTGCTTTGGAATTGCTCTGTAGACCAGGCTGGCCTTGAACTCATACTCTTCAGTCTGTaGAGCTCCCTTGGCGCATTC | + |
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Preference number: 5 (lower is better) Translates to: MEPWVLWNCSVDQAGLELILFSL*SSLGAF Trigger: GAATGCGCCAAGGGAGCTCAACAGACTGAAGAGTAT...GAGTTCAAGGCCAGCCTGGTCTACAGAGCAATTCCAAAGCACCCAGGGCTCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 ENSMUST00000220107.2 |
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| CDS-3UTR CAA 90 bp | ATGGAGCCCTGGGTGCTTTGGAATTGCTCTGTAGACCAGGCTGGCCTTGAACTCCTTCAGTCTTTTTCTTaGCCTCTGGTTCATCCACAC | + |
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Preference number: 5 (lower is better) Translates to: MEPWVLWNCSVDQAGLELLQSFS*PLVHPH Trigger: GTGTGGATGAACCAGAGGCAAAGAAAAAGACTGAAG...GAGTTCAAGGCCAGCCTGGTCTACAGAGCAATTCCAAAGCACCCAGGGCTCCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| CDS-3UTR CAA 90 bp | GAGGGCGCATCCTTGGGAGTTGGTTTTGAGCCACCCAACAAGAAACAGAAGTTGCTTCAGTCTTTTTCTTaGCCTCTGGTTCATCCACAC | + |
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Preference number: 5 (lower is better) Translates to: EGASLGVGFEPPNKKQKLLQSFS*PLVHPH Trigger: GTGTGGATGAACCAGAGGCAAAGAAAAAGACTGAAG...CAACTTCTGTTTCTTGTTGGGTGGCTCAAAACCAACTCCCAAGGATGCGCCCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| CDS-3UTR CAA 90 bp | CCAGGCAGTATCCAATCACAACTTCAGCATAACATTCTTTCATCACCAAAGAGAATACTCTTCAGTCTGTaGAGCTCCCTTGGCGCATTC | + |
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Preference number: 5 (lower is better) Translates to: PGSIQSQLQHNILSSPKRILFSL*SSLGAF Trigger: GAATGCGCCAAGGGAGCTCAACAGACTGAAGAGTAT...TCTCTTTGGTGATGAAAGAATGTTATGCTGAAGTTGTGATTGGATACTGCCTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 |
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| CDS GCA 72 bp | TCCTCATCTGCGCCGTCACACCGCCCTTCCTCACACTaGATTTTCTCCTGGCGAGGTTTGGCTACCACCACG | + |
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Preference number: 6 (lower is better) Translates to: SSSAPSHRPSSH*IFSWRGLATTT Trigger: CGTGGTGGTAGCCAAACCTCGCCAGGAGAAAATGCAGTGTGAGGAAGGGCGGTGTGACGGCGCAGATGAGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 ENSMUST00000220107.2 |
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| CDS CAA 72 bp | GCATCCCCGTCCACTCTGAGGATACTCTTCAGTCTGTaGAGCTCCCTTGGCGCATTCTTCTTTCTCTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: ASPSTLRILFSL*SSLGAFFFLFS Trigger: CGAGAAGAGAAAGAAGAATGCGCCAAGGGAGCTCAACAGACTGAAGAGTATCCTCAGAGTGGACGGGGATGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 ENSMUST00000220107.2 |
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| CDS CCA 72 bp | CACTCTGAGGATACTCTTCAGTCTGTTGAGCTCCCTTaGCGCATTCTTCTTTCTCTTCTCGGCCCGCATCTT | + |
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Preference number: 6 (lower is better) Translates to: HSEDTLQSVELP*RILLSLLGPHL Trigger: AAGATGCGGGCCGAGAAGAGAAAGAAGAATGCGCCAAGGGAGCTCAACAGACTGAAGAGTATCCTCAGAGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 ENSMUST00000220107.2 |
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| CDS CAA 72 bp | GCATTTTCTCCTGGCGAGGTTTGGCTACCACCACGGTaGCTATCTCCTCAACGTCTTTCATTAGAGCATCCC | + |
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Preference number: 6 (lower is better) Translates to: AFSPGEVWLPPR*LSPQRLSLEHP Trigger: GGGATGCTCTAATGAAAGACGTTGAGGAGATAGCAACCGTGGTGGTAGCCAAACCTCGCCAGGAGAAAATGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020444.16 ENSMUST00000130198.3 ENSMUST00000220107.2 |
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