RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LLGL2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020782

Ensembl transcript IDs: ENSMUST00000103032.11, ENSMUST00000128826.2, ENSMUST00000133250.8, ENSMUST00000137900.2, ENSMUST00000155878.8, ENSMUST00000172552.8, ENSMUST00000173289.8, ENSMUST00000177736.8

Found 366 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGCCCCTGGCCCGGCTTaGGCTGGCAAGGCCCTCAGT +
Preference number: 2 (lower is better)
Translates to: GRPRWELPSPEARSSNRKAPGPA*AGKALS
Trigger: ACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGC...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
3UTR-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGGCACTGGCAGCCCCTaGCCCGGCTTGGGCTGGCAA +
Preference number: 2 (lower is better)
Translates to: GRPRWELPSPEARSSNRKGTGSP*PGLGWQ
Trigger: TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCC...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
3UTR-3UTR CCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCCCCTGGCCCGGCTTaGGCTGGCAAGGCCCTCAGT +
Preference number: 2 (lower is better)
Translates to: RPRWELPSPEARSSNRKVAPGPA*AGKALS
Trigger: ACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGC...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
3UTR-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGGCACTGGCAGCCCCTaGCCCGGCTTGGGCTGGCAA +
Preference number: 2 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWGTGSP*PGLGWQ
Trigger: TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
3UTR-3UTR CAA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGAGCCCCTGGCCCGGCTaGGGCTGGCAAGGCCCTCAG +
Preference number: 3 (lower is better)
Translates to: GRPRWELPSPEARSSNRKSPWPG*GWQGPQ
Trigger: CTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCT...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCCGTCCTCGTGCCCTGTaGGCAGCAGGTCCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALRPRAL*AAGPSG
Trigger: CCCAGAGGGACCTGCTGCTCACAGGGCACGAGGACG...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGACTCGCCGCACCCGTaGGCCCTCCAGGGCCGTCAG +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQDSPHP*ALQGRQ
Trigger: CTGACGGCCCTGGAGGGCTCACGGGTGCGGCGAGTC...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGACTCGCCGCACCCGTaGGCCCTCCAGGGCCGTCAG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVDSPHP*ALQGRQ
Trigger: CTGACGGCCCTGGAGGGCTCACGGGTGCGGCGAGTC...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCCGTCCTCCCGGCGGATaGAGCTGTACCGCACCTGGG +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALRPPGG*SCTAPG
Trigger: CCCAGGTGCGGTACAGCTGCATCCGCCGGGAGGACG...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCACGGGCCACTGGCAGTaGCTGCCGTCGGAGTGGCAG +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALTGHWQ*LPSEWQ
Trigger: CTGCCACTCCGACGGCAGCCACTGCCAGTGGCCCGT...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCGGGCAGCTGGACTGGTaGCCAGCCGGGTGTCTGCAG +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALGQLDW*PAGCLQ
Trigger: CTGCAGACACCCGGCTGGCCACCAGTCCAGCTGCCC...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGCTGCCCTGCCGTGCCTaGCACAGCCAGGTAGCCGCT +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKLPCRA*HSQVAA
Trigger: AGCGGCTACCTGGCTGTGGCAGGCACGGCAGGGCAG...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGCGGTGCCTCCGTTGGTaGCAGCCCACAGGGAGGGAC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKRCLRW*QPTGRD
Trigger: GTCCCTCCCTGTGGGCTGGCACCAACGGAGGCACCG...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCCGTCGAGCACCAGGATaGCCACCACAGGCGCGCGAT +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALRRAPG*PPQARD
Trigger: ATCGCGCGCCTGTGGTGGGCATCCTGGTGCTCGACG...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTACGGGCCACTGGCAGTaGCTGCCGTCGGAGTGGCAG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSTGHWQ*LPSEWQ
Trigger: CTGCCACTCCGACGGCAGCCACTGCCAGTGGCCCGT...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGGCGGTCCCCATAGCTaGCCCGTGGCATACCGCCCT +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKGGPHS*PVAYRP
Trigger: AGGGCGGTATGCCACGGGCCAGCTATGGGGACCGCC...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTGGGCAGCTGGACTGGTaGCCAGCCGGGTGTCTGCAG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSGQLDW*PAGCLQ
Trigger: CTGCAGACACCCGGCTGGCCACCAGTCCAGCTGCCC...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCGTAGGGCAGCTGGACTaGTGGCCAGCCGGGTGTCTG +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALVGQLD*WPAGCL
Trigger: CAGACACCCGGCTGGCCACCAGTCCAGCTGCCCTAC...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCCCTGAAGGTCCCAGATaGCGACGAGGCCTCGGCTGT +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALPEGPR*RRGLGC
Trigger: ACAGCCGAGGCCTCGTCGTCATCTGGGACCTTCAGG...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGAGCGCTCGGCTGCCCTaGAGGTCCCAGATGACGACG +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKSARLP*RSQMTT
Trigger: CGTCGTCATCTGGGACCTTCAGGGCAGCCGAGCGCT...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGCCGTTGTGGACCACTaGGATGCAGTGGCGGTCCCC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKAVVDH*DAVAVP
Trigger: GGGGACCGCCACTGCATCTCAGTGGTCCACAACGGC...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCGTCCTCGTGCCCTGTaGGCAGCAGGTCCCTCTGGG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWRPRAL*AAGPSG
Trigger: CCCAGAGGGACCTGCTGCTCACAGGGCACGAGGACG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTCCTCACCCTGGGCAATaGGGTTCTCGCTGGGGTCCG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSPHPGQ*GSRWGP
Trigger: CGGACCCCAGCGAGAACCTCATTGCCCAGGGTGAGG...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGCAGAGCCAAGGAGGTaGCCACAGCTGGGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQAEPRR*PQLGAG
Trigger: GCCAGCCCCCAGCTGTGGTCACCTCCTTGGCTCTGC...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCACCGCACCTGGGGCTTaGGCAGGGGCATTGAGACCA +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALTAPGA*AGALRP
Trigger: TGGTCTCAATGCCCCTGCTCAAGCCCCAGGTGCGGT...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCCGGAACCCCGGGAGCTaGACCACAAACACGTTGCCG +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALRNPGS*TTNTLP
Trigger: CGGCAACGTGTTTGTGGTGCAGCTCCCGGGGTTCCG...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGCACCTGCCCTGCCGTaGCTGCCACAGCCAGGTAGC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWAPALP*LPQPGS
Trigger: GCTACCTGGCTGTGGCAGGCACGGCAGGGCAGGTGC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGCACCTGCCCTGCCGTaGCTGCCACAGCCAGGTAGC +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQAPALP*LPQPGS
Trigger: GCTACCTGGCTGTGGCAGGCACGGCAGGGCAGGTGC...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAACACCAGCACCTGCCCTaGCGTGCCTGCCACAGCCAG +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQHQHLP*RACHSQ
Trigger: CTGGCTGTGGCAGGCACGGCAGGGCAGGTGCTGGTG...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCACCAGCACCTGCCCTaGCGTGCCTGCCACAGCCAG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWHQHLP*RACHSQ
Trigger: CTGGCTGTGGCAGGCACGGCAGGGCAGGTGCTGGTG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGCCGCCACTCGGAGTaGAGAGCCAAGGAGGTGACC +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALSRHSE*RAKEVT
Trigger: GGTCACCTCCTTGGCTCTGCACTCCGAGTGGCGGCT...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGTTCACAGCCTGGGCCTaGGCCTCGCCTGTGGGGCCA +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVFTAWA*ASPVGP
Trigger: TGGCCCCACAGGCGAGGCGCAGGCCCAGGCTGTGAA...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000103032.11
CDS-3UTR GCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCGGTGCCTCCGTTGGTaGCAGCCCACAGGGAGGGAC +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVRCLRW*QPTGRD
Trigger: GTCCCTCCCTGTGGGCTGGCACCAACGGAGGCACCG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCGTCCTCCCGGCGGATaGAGCTGTACCGCACCTGGG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWRPPGG*SCTAPG
Trigger: CCCAGGTGCGGTACAGCTGCATCCGCCGGGAGGACG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGGCGGTCCCCATAGCTaGCCCGTGGCATACCGCCCT +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWGGPHS*PVAYRP
Trigger: AGGGCGGTATGCCACGGGCCAGCTATGGGGACCGCC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCCACAGGGAGGGACAGTaGCGGGAACTGTCCCTCAGG +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALHREGQ*RELSLR
Trigger: CCTGAGGGACAGTTCCCGCCACTGTCCCTCCCTGTG...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGAGACGGTGCCTCCGTTaGTGCCAGCCCACAGGGAGG +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKRRCLR*CQPTGR
Trigger: CCTCCCTGTGGGCTGGCACCAACGGAGGCACCGTCT...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTCCTGAAGGTCCCAGATaGCGACGAGGCCTCGGCTGT +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSPEGPR*RRGLGC
Trigger: ACAGCCGAGGCCTCGTCGTCATCTGGGACCTTCAGG...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAAGCGCTCGGCTGCCCTaGAGGTCCCAGATGACGACG +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQSARLP*RSQMTT
Trigger: CGTCGTCATCTGGGACCTTCAGGGCAGCCGAGCGCT...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTGGCTGCTGAGGAAATaGCTGAGCGCTCGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSWLLRK*LSARLP
Trigger: GGGCAGCCGAGCGCTCAGTCATTTCCTCAGCAGCCA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTCGCCCTGGAAGATGGTaGAGGGCAACCCTTGCCTGG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSRPGRW*RATLAW
Trigger: CCAGGCAAGGGTTGCCCTTCACCATCTTCCAGGGCG...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCCGTTGTGGACCACTaGGATGCAGTGGCGGTCCCC +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVAVVDH*DAVAVP
Trigger: GGGGACCGCCACTGCATCTCAGTGGTCCACAACGGC...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTCATGGTGGAGAAGTGTaGGTTCTGGCGGCTGCCCGC +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSHGGEV*VLAAAR
Trigger: GCGGGCAGCCGCCAGAACTCACACTTCTCCACCATG...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGCATGGTGGAGAAGTGTaGGTTCTGGCGGCTGCCCGC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKHGGEV*VLAAAR
Trigger: GCGGGCAGCCGCCAGAACTCACACTTCTCCACCATG...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCCTCACCCTGGGCAATaGGGTTCTCGCTGGGGTCCG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVPHPGQ*GSRWGP
Trigger: CGGACCCCAGCGAGAACCTCATTGCCCAGGGTGAGG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCCCGTCCGCTCAGCCTTaGTATTCACAGCCTGGGCCT +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALPSAQP*YSQPGP
Trigger: AGGCCCAGGCTGTGAATATCAAGGCTGAGCGGACGG...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAAGGAAGCTATGCCGCTaGCGTCCTCCCGGCGGATGC +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQRKLCR*RPPGGC
Trigger: GCATCCGCCGGGAGGACGTCAGCGGCATAGCTTCCT...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGAGGAAGCTATGCCGCTaGCGTCCTCCCGGCGGATGC +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVRKLCR*RPPGGC
Trigger: GCATCCGCCGGGAGGACGTCAGCGGCATAGCTTCCT...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTCGGAACCCCGGGAGCTaGACCACAAACACGTTGCCG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSRNPGS*TTNTLP
Trigger: CGGCAACGTGTTTGTGGTGCAGCTCCCGGGGTTCCG...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTTGGGGTCTCGAGGGTaGTCCTGCAGAGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSLGSRG*SCRAST
Trigger: GGTGGAGGCTCTGCAGGAGCACCCTCGAGACCCCAA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTCAAAGGAGCCCACCTTaGGGAGTGGGGGCCACTCGT +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSQRSPP*GVGATR
Trigger: ACGAGTGGCCCCCACTCCGCAAGGTGGGCTCCTTTG...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTAGGTCAGCCTCCACCTaGTCCACAGCATGCTCGGCC +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSRSAST*STACSA
Trigger: GGCCGAGCATGCTGTGGAGCAGGTGGAGGCTGACCT...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTGCCAACTCCATGTTCTaGAGGCCCGTCCGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSANSMF*RPVRSA
Trigger: GGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGGC...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCGTCGAGCACCAGGATaGCCACCACAGGCGCGCGAT +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVRRAPG*PPQARD
Trigger: ATCGCGCGCCTGTGGTGGGCATCCTGGTGCTCGACG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGCAGAGCGGGTTCCGATaGCCAGGATGCGCAGCGAAG +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKQSGFR*PGCAAK
Trigger: CTTCGCTGCGCATCCTGGCCATCGGAACCCGCTCTG...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCCCCATAGCTGGCCCGTaGCATACCGCCCTGGAAGAT +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALPIAGP*HTALED
Trigger: ATCTTCCAGGGCGGTATGCCACGGGCCAGCTATGGG...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGTAGGGCAGCTGGACTaGTGGCCAGCCGGGTGTCTG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWVGQLD*WPAGCL
Trigger: CAGACACCCGGCTGGCCACCAGTCCAGCTGCCCTAC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAAGACGGTGCCTCCGTTaGTGCCAGCCCACAGGGAGG +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQRRCLR*CQPTGR
Trigger: CCTCCCTGTGGGCTGGCACCAACGGAGGCACCGTCT...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCCTCTTCGACAGGTCATaGGCGACTTCCAGGGGCTCG +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALLFDRS*ATSRGS
Trigger: CGAGCCCCTGGAAGTCGCCCATGACCTGTCGAAGAG...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGGGCGCCATATAGCTTaGCAGCTCCAGAGCGGGTTC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKGRHIA*QLQSGF
Trigger: GAACCCGCTCTGGAGCTGTCAAGCTATATGGCGCCC...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGTGGCTGCTGAGGAAATaGCTGAGCGCTCGGCTGCCC +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVWLLRK*LSARLP
Trigger: GGGCAGCCGAGCGCTCAGTCATTTCCTCAGCAGCCA...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCGTCGGAGTGGCAGGTaGCAATCAGGCAGCCATCCC +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVRRSGR*QSGSHP
Trigger: GGGATGGCTGCCTGATTGTCACCTGCCACTCCGACG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCGCCCTGGAAGATGGTaGAGGGCAACCCTTGCCTGG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVRPGRW*RATLAW
Trigger: CCAGGCAAGGGTTGCCCTTCACCATCTTCCAGGGCG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGTGGGGTCCGTGTCTGTaGGGAACACCCTCACAGTGC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKWGPCL*GTPSQC
Trigger: GCACTGTGAGGGTGTTCCTCACAGACACGGACCCCA...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAATCCGGACAAAGCCAGTaGAGGAGTCCTCCGCGGAGC +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQSGQSQ*RSPPRS
Trigger: GCTCCGCGGAGGACTCCTTCACTGGCTTTGTCCGGA...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCTGTCACCCAAGTTGGTaGGCACTGCCAGGTGGTGCT +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALCHPSW*ALPGGA
Trigger: AGCACCACCTGGCAGTGCTCACCAACTTGGGTGACA...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAACCGCACCTGGGGCTTaGGCAGGGGCATTGAGACCA +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQTAPGA*AGALRP
Trigger: TGGTCTCAATGCCCCTGCTCAAGCCCCAGGTGCGGT...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCCTGCTTCTCCATTGCTaGGCCTGCAACCCACAGCCA +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALLLLHC*ACNPQP
Trigger: TGGCTGTGGGTTGCAGGCTCAGCAATGGAGAAGCAG...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTGTAGATGGCTGCTCTaGGCCTGGGGCCTCACCTCG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWCRWLL*AWGLTS
Trigger: CGAGGTGAGGCCCCAGGCTCAGAGCAGCCATCTACA...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAAGCTCTCTTCTTCCTaGAGCTCTGACACCCCGCCC +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALKLSSS*SSDTPP
Trigger: GGGCGGGGTGTCAGAGCTGCAGGAAGAAGAGAGCTT...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGCACCACAAACACGTTaGCGCTCTCGGTGCCCAGGT +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKAPQTR*RSRCPG
Trigger: ACCTGGGCACCGAGAGCGGCAACGTGTTTGTGGTGC...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTGCACCACAAACACGTTaGCGCTCTCGGTGCCCAGGT +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSAPQTR*RSRCPG
Trigger: ACCTGGGCACCGAGAGCGGCAACGTGTTTGTGGTGC...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGTTGGGGTCTCGAGGGTaGTCCTGCAGAGCCTCCACC +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVLGSRG*SCRAST
Trigger: GGTGGAGGCTCTGCAGGAGCACCCTCGAGACCCCAA...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAAGTCGAAGGCCGTCTaGTGGCCGTTGTGGACCACT +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALKSKAV*WPLWTT
Trigger: AGTGGTCCACAACGGCCAGCAGACGGCCTTCGACTT...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAACAAAGGAGCCCACCTTaGGGAGTGGGGGCCACTCGT +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQQRSPP*GVGATR
Trigger: ACGAGTGGCCCCCACTCCGCAAGGTGGGCTCCTTTG...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTACCTGCTCCACAGCATaGTCGGCCGCCTCATCGTTC +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSTCSTA*SAASSF
Trigger: GAACGATGAGGCGGCCGAGCATGCTGTGGAGCAGGT...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGAGGTCAGCCTCCACCTaGTCCACAGCATGCTCGGCC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWRSAST*STACSA
Trigger: GGCCGAGCATGCTGTGGAGCAGGTGGAGGCTGACCT...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAAGCCGCCACTCGGAGTaGAGAGCCAAGGAGGTGACC +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQSRHSE*RAKEVT
Trigger: GGTCACCTCCTTGGCTCTGCACTCCGAGTGGCGGCT...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGCGAAACCATGGCTGGTaGCAAAGGCCACAAGCCGCC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKRNHGW*QRPQAA
Trigger: GGCGGCTTGTGGCCTTTGGCACCAGCCATGGTTTCG...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGCCAACTCCATGTTCTaGAGGCCCGTCCGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWANSMF*RPVRSA
Trigger: GGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGGC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGAAAAGGCGTAGACGGTaGCTCCGTTGGTGCCAGCCC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKKRRRR*LRWCQP
Trigger: GGGCTGGCACCAACGGAGGCACCGTCTACGCCTTTT...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCAGAGCGGGTTCCGATaGCCAGGATGCGCAGCGAAG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWQSGFR*PGCAAK
Trigger: CTTCGCTGCGCATCCTGGCCATCGGAACCCGCTCTG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGGTTCTGGGTGTCACTaGAGACGGGCCACTGGCAGT +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKGSGCH*RRATGS
Trigger: ACTGCCAGTGGCCCGTCTCCAGTGACACCCAGAACC...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCGCTGCGCAGAGGTTCTaGGTTCTGGGTGTCACTGGA +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALAAQRF*VLGVTG
Trigger: TCCAGTGACACCCAGAACCCAGAACCTCTGCGCAGC...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGCCCATAGCTGGCCCGTaGCATACCGCCCTGGAAGAT +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKPIAGP*HTALED
Trigger: ATCTTCCAGGGCGGTATGCCACGGGCCAGCTATGGG...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTCGAAGGCCGTCTGCTaGCCGTTGTGGACCACTGAG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSSKAVC*PLWTTE
Trigger: CTCAGTGGTCCACAACGGCCAGCAGACGGCCTTCGA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGGCCGAAACCATGGCTaGTGCCAAAGGCCACAAGCC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKGRNHG*CQRPQA
Trigger: GGCTTGTGGCCTTTGGCACCAGCCATGGTTTCGGCC...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTCAGCTGTACCGCACCTaGGGCTTGAGCAGGGGCATT +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSQLYRT*GLSRGI
Trigger: AATGCCCCTGCTCAAGCCCCAGGTGCGGTACAGCTG...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGGCGCCATATAGCTTaGCAGCTCCAGAGCGGGTTC +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVGRHIA*QLQSGF
Trigger: GAACCCGCTCTGGAGCTGTCAAGCTATATGGCGCCC...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTTCTTCCTGCAGCTCTaGCACCCCGCCCTTGACCTT +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSFFLQL*HPALDL
Trigger: AAGGTCAAGGGCGGGGTGTCAGAGCTGCAGGAAGAA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCGTGTCTGCAGGTCAATaGCTACCAGTTCCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALVSAGQ*LPVPPR
Trigger: CCGAGGAGGAACTGGTAGTCATTGACCTGCAGACAC...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGTGGGGTCCGTGTCTGTaGGGAACACCCTCACAGTGC +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVWGPCL*GTPSQC
Trigger: GCACTGTGAGGGTGTTCCTCACAGACACGGACCCCA...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGTGCCGCCGTTGCTGGTaGTCGAAGAGGCCGAAACCA +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVCRRCW*SKRPKP
Trigger: TGGTTTCGGCCTCTTCGATCACCAGCAACGGCGGCA...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAACCGTCCGCTCAGCCTTaGTATTCACAGCCTGGGCCT +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQPSAQP*YSQPGP
Trigger: AGGCCCAGGCTGTGAATATCAAGGCTGAGCGGACGG...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTCTTGAGCAGGGGCATTaGGACCACCTGGATGTCACC +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSLEQGH*DHLDVT
Trigger: GGTGACATCCAGGTGGTCTCAATGCCCCTGCTCAAG...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTTCCGATGGCCAGGATaGGCAGCGAAGGGCTATAGC +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSFRWPG*AAKGYS
Trigger: GCTATAGCCCTTCGCTGCGCATCCTGGCCATCGGAA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGTTCCGATGGCCAGGATaGGCAGCGAAGGGCTATAGC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKFRWPG*AAKGYS
Trigger: GCTATAGCCCTTCGCTGCGCATCCTGGCCATCGGAA...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCGGCAGGAAGTGGATCTaGAGCACTGCGTTGTTCTCC +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALGRKWI*STALFS
Trigger: GGAGAACAACGCAGTGCTGCAGATCCACTTCCTGCC...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGAAGCTCTCTTCTTCCTaGAGCTCTGACACCCCGCCC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKKLSSS*SSDTPP
Trigger: GGGCGGGGTGTCAGAGCTGCAGGAAGAAGAGAGCTT...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGAGAATCTCAGTGACCTaGGTGGCACTGGGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWRISVT*VALGAA
Trigger: GGCTGCCCCCAGTGCCACGCAGGTCACTGAGATTCT...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAAGAATCTCAGTGACCTaGGTGGCACTGGGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQRISVT*VALGAA
Trigger: GGCTGCCCCCAGTGCCACGCAGGTCACTGAGATTCT...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCGTTGCCGCTCTCGGTaGCCAGGTAGAGCAGTTCTC +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVRCRSR*PGRAVL
Trigger: GAGAACTGCTCTACCTGGGCACCGAGAGCGGCAACG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCGTTGCCGCTCTCGGTaGCCAGGTAGAGCAGTTCTC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWRCRSR*PGRAVL
Trigger: GAGAACTGCTCTACCTGGGCACCGAGAGCGGCAACG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGTCTCGAGGGTGCTCCTaGAGAGCCTCCACCATCTCA +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKSRGCS*RASTIS
Trigger: TGAGATGGTGGAGGCTCTGCAGGAGCACCCTCGAGA...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGTGTGGACCACTGAGATaGAGTGGCGGTCCCCATAGC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKCGPLR*SGGPHS
Trigger: GCTATGGGGACCGCCACTGCATCTCAGTGGTCCACA...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGACCTGCTCCACAGCATaGTCGGCCGCCTCATCGTTC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWTCSTA*SAASSF
Trigger: GAACGATGAGGCGGCCGAGCATGCTGTGGAGCAGGT...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGAAAAGGCGTAGACGGTaGCTCCGTTGGTGCCAGCCC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWKRRRR*LRWCQP
Trigger: GGGCTGGCACCAACGGAGGCACCGTCTACGCCTTTT...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTCAAACACTCGCCGGTaGCGAGCCTCCTCTGGCAAC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWSNTRR*RASSGN
Trigger: GTTGCCAGAGGAGGCTCGCCACCGGCGAGTGTTTGA...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGTGGCTGCCGTCGGAGTaGCAGGTGACAATCAGGCAG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVWLPSE*QVTIRQ
Trigger: CTGCCTGATTGTCACCTGCCACTCCGACGGCAGCCA...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTGGCTGCCGTCGGAGTaGCAGGTGACAATCAGGCAG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWWLPSE*QVTIRQ
Trigger: CTGCCTGATTGTCACCTGCCACTCCGACGGCAGCCA...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTGTCTGCTGGCCGTTGTaGACCACTGAGATGCAGTGG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSVCWPL*TTEMQW
Trigger: CCACTGCATCTCAGTGGTCCACAACGGCCAGCAGAC...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGTCGAAGGCCGTCTGCTaGCCGTTGTGGACCACTGAG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVSKAVC*PLWTTE
Trigger: CTCAGTGGTCCACAACGGCCAGCAGACGGCCTTCGA...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCTGGGCCACTCCATGGTaGAGAAGTGTGAGTTCTGGC +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALWATPW*RSVSSG
Trigger: GCCAGAACTCACACTTCTCCACCATGGAGTGGCCCA...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGACCACAGCTGGGGGCTaGCACTGCACCAGTACAAAG +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKTTAGG*HCTSTK
Trigger: CTTTGTACTGGTGCAGTGCCAGCCCCCAGCTGTGGT...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGTTGATATTCACAGCCTaGGCCTGCGCCTCGCCTGTG +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKLIFTA*ACASPV
Trigger: CACAGGCGAGGCGCAGGCCCAGGCTGTGAATATCAA...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103032.11
CDS-3UTR CCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCTCTTCGACAGGTCATaGGCGACTTCCAGGGGCTCG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVLFDRS*ATSRGS
Trigger: CGAGCCCCTGGAAGTCGCCCATGACCTGTCGAAGAG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAACAGCTGTACCGCACCTaGGGCTTGAGCAGGGGCATT +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQQLYRT*GLSRGI
Trigger: AATGCCCCTGCTCAAGCCCCAGGTGCGGTACAGCTG...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGTGTCATCCAGCAGAGTaGCCAGCTGACACTGACCAG +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKCHPAE*PADTDQ
Trigger: CTGGTCAGTGTCAGCTGGTCACTCTGCTGGATGACA...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGCTCGGCTGTAGCCAATaGGGATTTGGTTGGGGTCTC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKLGCSQ*GFGWGL
Trigger: GAGACCCCAACCAAATCCTCATTGGCTACAGCCGAG...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTGTCACCCAAGTTGGTaGGCACTGCCAGGTGGTGCT +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWCHPSW*ALPGGA
Trigger: AGCACCACCTGGCAGTGCTCACCAACTTGGGTGACA...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAATGTCACCCAAGTTGGTaGGCACTGCCAGGTGGTGCT +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQCHPSW*ALPGGA
Trigger: AGCACCACCTGGCAGTGCTCACCAACTTGGGTGACA...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAACTTGAGCAGGGGCATTaGGACCACCTGGATGTCACC +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQLEQGH*DHLDVT
Trigger: GGTGACATCCAGGTGGTCTCAATGCCCCTGCTCAAG...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCTTGAGCAGGGGCATTaGGACCACCTGGATGTCACC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWLEQGH*DHLDVT
Trigger: GGTGACATCCAGGTGGTCTCAATGCCCCTGCTCAAG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCTGCTTCTCCATTGCTaGGCCTGCAACCCACAGCCA +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWLLLHC*ACNPQP
Trigger: TGGCTGTGGGTTGCAGGCTCAGCAATGGAGAAGCAG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTCTCGAGGGTGCTCCTaGAGAGCCTCCACCATCTCA +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWSRGCS*RASTIS
Trigger: TGAGATGGTGGAGGCTCTGCAGGAGCACCCTCGAGA...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTGTGGACCACTGAGATaGAGTGGCGGTCCCCATAGC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWCGPLR*SGGPHS
Trigger: GCTATGGGGACCGCCACTGCATCTCAGTGGTCCACA...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGAAGTCGAAGGCCGTCTaGTGGCCGTTGTGGACCACT +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWKSKAV*WPLWTT
Trigger: AGTGGTCCACAACGGCCAGCAGACGGCCTTCGACTT...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAATTGGTGGCTCCCTTaGATGTCTGGGCTCTTCGAC +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALNWWLP*MSGLFD
Trigger: GTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATT...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTCAAGTTGGTGAGCACTaGCAGGTGGTGCTCCCCATA +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSQVGEH*QVVLPI
Trigger: TATGGGGAGCACCACCTGGCAGTGCTCACCAACTTG...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGGTCCCCCTCCAGCGTaGTCTGGATTTCCTTTAGGA +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKGPPPA*SGFPLG
Trigger: TCCTAAAGGAAATCCAGAGCACGCTGGAGGGGGACC...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCGTGGCATACCGCCCTaGAAGATGGTGAAGGGCAAC +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVRGIPP*KMVKGN
Trigger: GTTGCCCTTCACCATCTTCCAGGGCGGTATGCCACG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCGTGGCATACCGCCCTaGAAGATGGTGAAGGGCAAC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWRGIPP*KMVKGN
Trigger: GTTGCCCTTCACCATCTTCCAGGGCGGTATGCCACG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGTCTGCTGGCCGTTGTaGACCACTGAGATGCAGTGG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWVCWPL*TTEMQW
Trigger: CCACTGCATCTCAGTGGTCCACAACGGCCAGCAGAC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCATGTTGGAGACGTGGTaGGAGCAGGTGATAGCGGAA +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALMLETW*EQVIAE
Trigger: TTCCGCTATCACCTGCTCCCACCACGTCTCCAACAT...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCACTCGTCCTCACCCTaGGCAATGAGGTTCTCGCTG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVHSSSP*AMRFSL
Trigger: CAGCGAGAACCTCATTGCCCAGGGTGAGGACGAGTG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCACTCGTCCTCACCCTaGGCAATGAGGTTCTCGCTG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWHSSSP*AMRFSL
Trigger: CAGCGAGAACCTCATTGCCCAGGGTGAGGACGAGTG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGACCACAGCTGGGGGCTaGCACTGCACCAGTACAAAG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVTTAGG*HCTSTK
Trigger: CTTTGTACTGGTGCAGTGCCAGCCCCCAGCTGTGGT...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTGCTCCCTTGCATGTCTaGGCTCTTCGACAGGTCATG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSAPLHV*ALRQVM
Trigger: CATGACCTGTCGAAGAGCCCAGACATGCAAGGGAGC...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGCTTCAGCTTCAGTTTaGCGCTCACCTTGGGCAGTG +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKASASV*RSPWAV
Trigger: CACTGCCCAAGGTGAGCGCCAAACTGAAGCTGAAGC...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAATGTCATCCAGCAGAGTaGCCAGCTGACACTGACCAG +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQCHPAE*PADTDQ
Trigger: CTGGTCAGTGTCAGCTGGTCACTCTGCTGGATGACA...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTTCTCCGGAAGAGTaGGGTAGAATCTCAGTGACC +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALSSPEE*GRISVT
Trigger: GGTCACTGAGATTCTACCTCACTCTTCCGGAGAACT...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAACTCGGCTGTAGCCAATaGGGATTTGGTTGGGGTCTC +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQLGCSQ*GFGWGL
Trigger: GAGACCCCAACCAAATCCTCATTGGCTACAGCCGAG...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTGTCTGCAGGTCAATaGCTACCAGTTCCTCCTCGG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVVSAGQ*LPVPPR
Trigger: CCGAGGAGGAACTGGTAGTCATTGACCTGCAGACAC...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGTGAAGTGTGCACTTaGCAAAGACCTGCCGCCGTT +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVGEVCT*QRPAAV
Trigger: AACGGCGGCAGGTCTTTGTCAAGTGCACACTTCACC...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGGTGAAGTGTGCACTTaGCAAAGACCTGCCGCCGTT +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWGEVCT*QRPAAV
Trigger: AACGGCGGCAGGTCTTTGTCAAGTGCACACTTCACC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTCTTCTTGGCTTTGGTTaGATCCACCAAACACCGGGG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSLLGFG*IHQTPG
Trigger: CCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAG...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCAGGAAGTGGATCTaGAGCACTGCGTTGTTCTCC +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQGRKWI*STALFS
Trigger: GGAGAACAACGCAGTGCTGCAGATCCACTTCCTGCC...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTTCAGGCTCCACAGGTaGAGGCTATTGTCATCCAGC +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSFRLHR*RLLSSS
Trigger: GCTGGATGACAATAGCCTGCACCTGTGGAGCCTGAA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCAAGTTGGTGAGCACTaGCAGGTGGTGCTCCCCATA +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWQVGEH*QVVLPI
Trigger: TATGGGGAGCACCACCTGGCAGTGCTCACCAACTTG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAACAAGTTGGTGAGCACTaGCAGGTGGTGCTCCCCATA +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQQVGEH*QVVLPI
Trigger: TATGGGGAGCACCACCTGGCAGTGCTCACCAACTTG...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGTCCCCCTCCAGCGTaGTCTGGATTTCCTTTAGGA +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQGPPPA*SGFPLG
Trigger: TCCTAAAGGAAATCCAGAGCACGCTGGAGGGGGACC...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGGTCCCCCTCCAGCGTaGTCTGGATTTCCTTTAGGA +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWGPPPA*SGFPLG
Trigger: TCCTAAAGGAAATCCAGAGCACGCTGGAGGGGGACC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTGGGCCACTCCATGGTaGAGAAGTGTGAGTTCTGGC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWWATPW*RSVSSG
Trigger: GCCAGAACTCACACTTCTCCACCATGGAGTGGCCCA...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTGGTGCCACCATCTATaGGCCACTCCATGGTGGAGA +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWWCHHL*ATPWWR
Trigger: TCTCCACCATGGAGTGGCCCATAGATGGTGGCACCA...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAATGGTGCCACCATCTATaGGCCACTCCATGGTGGAGA +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQWCHHL*ATPWWR
Trigger: TCTCCACCATGGAGTGGCCCATAGATGGTGGCACCA...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCTCCCTTGCATGTCTaGGCTCTTCGACAGGTCATG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVAPLHV*ALRQVM
Trigger: CATGACCTGTCGAAGAGCCCAGACATGCAAGGGAGC...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGCTTCAGCTTCAGTTTaGCGCTCACCTTGGGCAGTG +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQASASV*RSPWAV
Trigger: CACTGCCCAAGGTGAGCGCCAAACTGAAGCTGAAGC...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTGGCATTGAGACCACCTaGATGTCACCCAAGTTGGTG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSGIETT*MSPKLV
Trigger: CACCAACTTGGGTGACATCCAGGTGGTCTCAATGCC...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGCAACCAGCCACTTGGTaGAGAGAGAAAAGCGCTCGA +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKQPATW*REKSAR
Trigger: TCGAGCGCTTTTCTCTCTCCACCAAGTGGCTGGTTG...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCGTTCAACCAGCCACTTaGTGGAGAGAGAAAAGCGCT +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALVQPAT*WREKSA
Trigger: AGCGCTTTTCTCTCTCCACCAAGTGGCTGGTTGAAC...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGCGTTGTTCTCCTTGTaGAGGCCCATGAACTCTACC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWALFSL*RPMNST
Trigger: GGTAGAGTTCATGGGCCTTCACAAGGAGAACAACGC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGAGCTGGTCACTGGGGTaGAGTGTGCACTTGACAAAG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWSWSLG*SVHLTK
Trigger: CTTTGTCAAGTGCACACTTCACCCCAGTGACCAGCT...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGAGCTGGTCACTGGGGTaGAGTGTGCACTTGACAAAG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVSWSLG*SVHLTK
Trigger: CTTTGTCAAGTGCACACTTCACCCCAGTGACCAGCT...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCTTCTTGGCTTTGGTTaGATCCACCAAACACCGGGG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVLLGFG*IHQTPG
Trigger: CCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCTGAGGAGGTCATTTTaGGGCCTGTGCCATTGCCAT +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWLRRSF*GLCHCH
Trigger: ATGGCAATGGCACAGGCCTCAAAATGACCTCCTCAG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAACTGAGGAGGTCATTTTaGGGCCTGTGCCATTGCCAT +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQLRRSF*GLCHCH
Trigger: ATGGCAATGGCACAGGCCTCAAAATGACCTCCTCAG...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGGAAAATCTTCTGGATaGCTAGCCGCGGATCATCGC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWGKSSG*LAADHR
Trigger: GCGATGATCCGCGGCTAGGCATCCAGAAGATTTTCC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGAAAATCTTCTGGATaGCTAGCCGCGGATCATCGC +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVGKSSG*LAADHR
Trigger: GCGATGATCCGCGGCTAGGCATCCAGAAGATTTTCC...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGAATTGGTGGCTCCCTTaGATGTCTGGGCTCTTCGAC +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWNWWLP*MSGLFD
Trigger: GTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATT...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCGTGAATACCTTGAATTaGTCCTCCGACACCACAAGC +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALVNTLN*SSDTTS
Trigger: GCTTGTGGTGTCGGAGGAGCAATTCAAGGTATTCAC...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTTGCTGGGCCGGTTGTaGTTCTTGGCTTTGGTTGAA +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSLLGRL*FLALVE
Trigger: TTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAATGTTGGAGACGTGGTaGGAGCAGGTGATAGCGGAA +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQMLETW*EQVIAE
Trigger: TTCCGCTATCACCTGCTCCCACCACGTCTCCAACAT...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGCTATGGGCCACTCCATaGTGGAGAAGTGTGAGTTCT +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKLWATP*WRSVSS
Trigger: AGAACTCACACTTCTCCACCATGGAGTGGCCCATAG...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGGCATTGAGACCACCTaGATGTCACCCAAGTTGGTG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWGIETT*MSPKLV
Trigger: CACCAACTTGGGTGACATCCAGGTGGTCTCAATGCC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCAACCAGCCACTTGGTaGAGAGAGAAAAGCGCTCGA +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVQPATW*REKSAR
Trigger: TCGAGCGCTTTTCTCTCTCCACCAAGTGGCTGGTTG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCAACCAGCCACTTGGTaGAGAGAGAAAAGCGCTCGA +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWQPATW*REKSAR
Trigger: TCGAGCGCTTTTCTCTCTCCACCAAGTGGCTGGTTG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCTTTGAGTTCCTGACGTaGCCTGAGGAGGTCATTTTG +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALFEFLT*PEEVIL
Trigger: CAAAATGACCTCCTCAGGCCACGTCAGGAACTCAAA...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAAGTTCTCCGGAAGAGTaGGGTAGAATCTCAGTGACC +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQSSPEE*GRISVT
Trigger: GGTCACTGAGATTCTACCTCACTCTTCCGGAGAACT...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR TCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTGACGTAGAGACTTCTTaGGGGACTTTACTCGAGACA +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSDVETS*GTLLET
Trigger: TGTCTCGAGTAAAGTCCCTCAAGAAGTCTCTACGTC...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGTGGTGTGGGAAGCCATaGTCCACTGTCTTGTTAAAC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKWCGKP*STVLLN
Trigger: GTTTAACAAGACAGTGGAGCATGGCTTCCCACACCA...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTGGTGTGGGAAGCCATaGTCCACTGTCTTGTTAAAC +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSWCGKP*STVLLN
Trigger: GTTTAACAAGACAGTGGAGCATGGCTTCCCACACCA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGTGGATCTGCAGCACTaGGTTGTTCTCCTTGTGAAG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWVDLQH*VVLLVK
Trigger: CTTCACAAGGAGAACAACGCAGTGCTGCAGATCCAC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGAACACCCTCACAGTaGTCAGTTTGTAGAGCAGAC +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQGTPSQ*SVCRAD
Trigger: GTCTGCTCTACAAACTGAGCACTGTGAGGGTGTTCC...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGAACACCCTCACAGTaGTCAGTTTGTAGAGCAGAC +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVGTPSQ*SVCRAD
Trigger: GTCTGCTCTACAAACTGAGCACTGTGAGGGTGTTCC...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTGTGAATACCTTGAATTaGTCCTCCGACACCACAAGC +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSVNTLN*SSDTTS
Trigger: GCTTGTGGTGTCGGAGGAGCAATTCAAGGTATTCAC...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTTGCTGGGCCGGTTGTaGTTCTTGGCTTTGGTTGAA +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWLLGRL*FLALVE
Trigger: TTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAA...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCAGAGGAAAATCTTCTaGATGCCTAGCCGCGGATCA +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVQRKIF*MPSRGS
Trigger: TGATCCGCGGCTAGGCATCCAGAAGATTTTCCTCTG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGACACCACAAGCAATTaGTGGCTCCCTTGCATGTCT +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWDTTSN*WLPCMS
Trigger: AGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGACACCACAAGCAATTaGTGGCTCCCTTGCATGTCT +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQDTTSN*WLPCMS
Trigger: AGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTC...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTTCAACCAGCCACTTaGTGGAGAGAGAAAAGCGCT +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVVQPAT*WREKSA
Trigger: AGCGCTTTTCTCTCTCCACCAAGTGGCTGGTTGAAC...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCTGTGCTTCTTGGCTTTaGTTGAATCCACCAAACACC +
Preference number: 4 (lower is better)
Translates to: KVARALAAPGPAWAGKALCASWL*LNPPNT
Trigger: GGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACA...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTTTGAGTTCCTGACGTaGCCTGAGGAGGTCATTTTG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSFEFLT*PEEVIL
Trigger: CAAAATGACCTCCTCAGGCCACGTCAGGAACTCAAA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTCCATCTCCATCACTTTaGCTCTTTGAGTTCCTGACG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSPSPSL*LFEFLT
Trigger: CGTCAGGAACTCAAAGAGCCAAAGTGATGGAGATGG...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128826.2
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGACTGTCTTGTTAAACTaGAACAGATCCCGCTTCAGC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKTVLLN*NRSRFS
Trigger: GCTGAAGCGGGATCTGTTCCAGTTTAACAAGACAGT...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGTGTGCTTCTTGGCTTTaGTTGAATCCACCAAACACC +
Preference number: 4 (lower is better)
Translates to: GRPRWELPSPEARSSNRKCASWL*LNPPNT
Trigger: GGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACA...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTGTGCTTCTTGGCTTTaGTTGAATCCACCAAACACC +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSCASWL*LNPPNT
Trigger: GGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGTTTGAGTTCCTGACGTaGCCTGAGGAGGTCATTTTG +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVFEFLT*PEEVIL
Trigger: CAAAATGACCTCCTCAGGCCACGTCAGGAACTCAAA...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTCATCTCCATCACTTTaGCTCTTTGAGTTCCTGACG +
Preference number: 4 (lower is better)
Translates to: ARALAAPGPAWAGKALSSSSPSL*LFEFLT
Trigger: CGTCAGGAACTCAAAGAGCCAAAGTGATGGAGATGA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR GCA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGTAGCCGCTGTATTTaGAGAGGAAAATCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: RPRWELPSPEARSSNRKVGSRCI*RGKSSG
Trigger: TCCAGAAGATTTTCCTCTGCAAATACAGCGGCTACC...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAACTGTCTTGTTAAACTaGAACAGATCCCGCTTCAGC +
Preference number: 4 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQTVLLN*NRSRFS
Trigger: GCTGAAGCGGGATCTGTTCCAGTTTAACAAGACAGT...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CCA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTCATCTCCATCACTTTaGCTCTTTGAGTTCCTGACG +
Preference number: 4 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWSSPSL*LFEFLT
Trigger: CGTCAGGAACTCAAAGAGCCAAAGTGATGGAGATGA...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGTCAAAGGAGCCCACCTaGCGGAGTGGGGGCCACTCG +
Preference number: 5 (lower is better)
Translates to: GRPRWELPSPEARSSNRKSKEPT*RSGGHS
Trigger: CGAGTGGCCCCCACTCCGCAAGGTGGGCTCCTTTGA...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGTCGGGGAGGGGCACGTaGTGTCCGTCGAGCACCAGG +
Preference number: 5 (lower is better)
Translates to: RPRWELPSPEARSSNRKVSGRGT*CPSSTR
Trigger: CCTGGTGCTCGACGGACACAACGTGCCCCTCCCCGA...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAATCGGGGAGGGGCACGTaGTGTCCGTCGAGCACCAGG +
Preference number: 5 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQSGRGT*CPSSTR
Trigger: CCTGGTGCTCGACGGACACAACGTGCCCCTCCCCGA...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTCTGACACCCCGCCCTaGACCTTCAGGCTCCACAGG +
Preference number: 5 (lower is better)
Translates to: ARALAAPGPAWAGKALSSSDTPP*TFRLHR
Trigger: CCTGTGGAGCCTGAAGGTCAAGGGCGGGGTGTCAGA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAATCAAAGGAGCCCACCTaGCGGAGTGGGGGCCACTCG +
Preference number: 5 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQSKEPT*RSGGHS
Trigger: CGAGTGGCCCCCACTCCGCAAGGTGGGCTCCTTTGA...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGTACCGCACCTGGGGCTaGAGCAGGGGCATTGAGACC +
Preference number: 5 (lower is better)
Translates to: GRPRWELPSPEARSSNRKYRTWG*SRGIET
Trigger: GGTCTCAATGCCCCTGCTCAAGCCCCAGGTGCGGTA...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTTACCGCACCTGGGGCTaGAGCAGGGGCATTGAGACC +
Preference number: 5 (lower is better)
Translates to: ARALAAPGPAWAGKALSSYRTWG*SRGIET
Trigger: GGTCTCAATGCCCCTGCTCAAGCCCCAGGTGCGGTA...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS TCA 90 bp GCACGGGCGCCAACTCCATGTTCTGCAGGCCCGTCCGCTCAGCCTTaGTATTCACAGCCTGGGCCTGCGCCTCGCCTGTGGGGCCACCAG +
Preference number: 5 (lower is better)
Translates to: ARAPTPCSAGPSAQP*YSQPGPAPRLWGHQ
Trigger: CTGGTGGCCCCACAGGCGAGGCGCAGGCCCAGGCTGTGAATATCAAGGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGGCGCCCGTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103032.11
CDS-3UTR CAA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTCTGACACCCCGCCCTaGACCTTCAGGCTCCACAGG +
Preference number: 5 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWSDTPP*TFRLHR
Trigger: CCTGTGGAGCCTGAAGGTCAAGGGCGGGGTGTCAGA...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGTGCACCACAAACACGTaGCCGCTCTCGGTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: RPRWELPSPEARSSNRKVCTTNT*PLSVPR
Trigger: CCTGGGCACCGAGAGCGGCAACGTGTTTGTGGTGCA...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTAGCTTCAGGGGGATGTaGGAGACGTGGTGGGAGCAG +
Preference number: 5 (lower is better)
Translates to: ARALAAPGPAWAGKALSSSFRGM*ETWWEQ
Trigger: CTGCTCCCACCACGTCTCCAACATCCCCCTGAAGCT...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTAAAGACCTGCCGCCGTaGCTGGTGATCGAAGAGGCC +
Preference number: 5 (lower is better)
Translates to: ARALAAPGPAWAGKALSSKDLPP*LVIEEA
Trigger: GGCCTCTTCGATCACCAGCAACGGCGGCAGGTCTTT...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS TCA 90 bp AGCCCTGCAGCTGCCAAAGTGGGCGACACCGACTCGCCGCACCCGTaGGCCCTCCAGGGCCGTCAGCTTCAGCTTCAGTTTGGCGCTCAC +
Preference number: 5 (lower is better)
Translates to: SPAAAKVGDTDSPHP*ALQGRQLQLQFGAH
Trigger: GTGAGCGCCAAACTGAAGCTGAAGCTGACGGCCCTGGAGGGCTCACGGGTGCGGCGAGTCGGTGTCGCCCACTTTGGCAGCTGCAGGGCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 90 bp CAGGAGGCACGCGCAGGGAAAAGGCGTAGACGGTGCCTCCGTTGGTaGCAGCCCACAGGGAGGGACAGTGGCGGGAACTGTCCCTCAGGT +
Preference number: 5 (lower is better)
Translates to: QEARAGKRRRRCLRW*QPTGRDSGGNCPSG
Trigger: ACCTGAGGGACAGTTCCCGCCACTGTCCCTCCCTGTGGGCTGGCACCAACGGAGGCACCGTCTACGCCTTTTCCCTGCGCGTGCCTCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTCCAATGAGGATTTGGTaGGGGTCTCGAGGGTGCTCC +
Preference number: 5 (lower is better)
Translates to: ARALAAPGPAWAGKALSSPMRIW*GSRGCS
Trigger: GGAGCACCCTCGAGACCCCAACCAAATCCTCATTGG...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGCCAATGAGGATTTGGTaGGGGTCTCGAGGGTGCTCC +
Preference number: 5 (lower is better)
Translates to: GRPRWELPSPEARSSNRKPMRIW*GSRGCS
Trigger: GGAGCACCCTCGAGACCCCAACCAAATCCTCATTGG...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGAGCTTCAGGGGGATGTaGGAGACGTGGTGGGAGCAG +
Preference number: 5 (lower is better)
Translates to: RPRWELPSPEARSSNRKVSFRGM*ETWWEQ
Trigger: CTGCTCCCACCACGTCTCCAACATCCCCCTGAAGCT...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGAAAGACCTGCCGCCGTaGCTGGTGATCGAAGAGGCC +
Preference number: 5 (lower is better)
Translates to: RPRWELPSPEARSSNRKVKDLPP*LVIEEA
Trigger: GGCCTCTTCGATCACCAGCAACGGCGGCAGGTCTTT...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGCTTCAGCTTCAGTTaGGCGCTCACCTTGGGCAGT +
Preference number: 5 (lower is better)
Translates to: KVARALAAPGPAWAGKALSFSFS*ALTLGS
Trigger: ACTGCCCAAGGTGAGCGCCAAACTGAAGCTGAAGCT...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCGGTTCAACCAGCCACTaGGTGGAGAGAGAAAAGCGC +
Preference number: 5 (lower is better)
Translates to: KVARALAAPGPAWAGKALGSTSH*VEREKR
Trigger: GCGCTTTTCTCTCTCCACCAAGTGGCTGGTTGAACC...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCGGCCGGTTGTGCTTCTaGGCTTTGGTTGAATCCACC +
Preference number: 5 (lower is better)
Translates to: KVARALAAPGPAWAGKALGRLCF*ALVEST
Trigger: GGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCC...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CCA 90 bp TGGGTGTCACTGGAGACGGGCCACTGGCAGTGGCTGCCGTCGGAGTaGCAGGTGACAATCAGGCAGCCATCCCGCTGCCAGCTGGCATTC +
Preference number: 5 (lower is better)
Translates to: WVSLETGHWQWLPSE*QVTIRQPSRCQLAF
Trigger: GAATGCCAGCTGGCAGCGGGATGGCTGCCTGATTGTCACCTGCCACTCCGACGGCAGCCACTGCCAGTGGCCCGTCTCCAGTGACACCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 90 bp GGGCCTGCGCCTCGCCTGTGGGGCCACCAGGCCGCCGTTTATGACTaGACACTCTGCTGCGACGCATCCGACGGAATGACTGACGTAGAG +
Preference number: 5 (lower is better)
Translates to: GPAPRLWGHQAAVYD*TLCCDASDGMTDVE
Trigger: CTCTACGTCAGTCATTCCGTCGGATGCGTCGCAGCAGAGTGTCCAGTCATAAACGGCGGCCTGGTGGCCCCACAGGCGAGGCGCAGGCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103032.11
CDS-3UTR CAA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGTGGATGTCACCCAAGTaGGTGAGCACTGCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWWMSPK*VSTARW
Trigger: CCACCTGGCAGTGCTCACCAACTTGGGTGACATCCA...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAATGGATGTCACCCAAGTaGGTGAGCACTGCCAGGTGG +
Preference number: 5 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQWMSPK*VSTARW
Trigger: CCACCTGGCAGTGCTCACCAACTTGGGTGACATCCA...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTGGTTCAACCAGCCACTaGGTGGAGAGAGAAAAGCGC +
Preference number: 5 (lower is better)
Translates to: ARALAAPGPAWAGKALSSGSTSH*VEREKR
Trigger: GCGCTTTTCTCTCTCCACCAAGTGGCTGGTTGAACC...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTGGCCGGTTGTGCTTCTaGGCTTTGGTTGAATCCACC +
Preference number: 5 (lower is better)
Translates to: ARALAAPGPAWAGKALSSGRLCF*ALVEST
Trigger: GGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCC...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS TCA 90 bp TCGCCGGTGGCGAGCCTCCTCTGGCAACCATTGCAGCACCTCATCTaGACAGATGGTCCTGTCGTGCAGCGTGCGGAACCCCGGGAGCTG +
Preference number: 5 (lower is better)
Translates to: SPVASLLWQPLQHLI*TDGPVVQRAEPREL
Trigger: CAGCTCCCGGGGTTCCGCACGCTGCACGACAGGACCATCTGTTCAGATGAGGTGCTGCAATGGTTGCCAGAGGAGGCTCGCCACCGGCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 90 bp AAGCCAGTGAAGGAGTCCTCCGCGGAGCGAGCCTCAATCTTCCGTTaGACGGGCGCCAACTCCATGTTCTGCAGGCCCGTCCGCTCAGCC +
Preference number: 5 (lower is better)
Translates to: KPVKESSAERASIFR*TGANSMFCRPVRSA
Trigger: GGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGGCGCCCGTGCAACGGAAGATTGAGGCTCGCTCCGCGGAGGACTCCTTCACTGGCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 90 bp AGAGGTTCTGGGTTCTGGGTGTCACTGGAGACGGGCCACTGGCAGTaGCTGCCGTCGGAGTGGCAGGTGACAATCAGGCAGCCATCCCGC +
Preference number: 5 (lower is better)
Translates to: RGSGFWVSLETGHWQ*LPSEWQVTIRQPSR
Trigger: GCGGGATGGCTGCCTGATTGTCACCTGCCACTCCGACGGCAGCCACTGCCAGTGGCCCGTCTCCAGTGACACCCAGAACCCAGAACCTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 90 bp GCTATGCCGCTGACGTCCTCCCGGCGGATGCAGCTGTACCGCACCTaGGGCTTGAGCAGGGGCATTGAGACCACCTGGATGTCACCCAAG +
Preference number: 5 (lower is better)
Translates to: AMPLTSSRRMQLYRT*GLSRGIETTWMSPK
Trigger: CTTGGGTGACATCCAGGTGGTCTCAATGCCCCTGCTCAAGCCCCAGGTGCGGTACAGCTGCATCCGCCGGGAGGACGTCAGCGGCATAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CCA 90 bp GGGGCCTCACCTCGCCTGTGGGGCCACCAGGCCGCCGTTTATGACTaGACACTCTGCTGCGACGCATCCGACGGAATGACTGACGTAGAG +
Preference number: 5 (lower is better)
Translates to: GASPRLWGHQAAVYD*TLCCDASDGMTDVE
Trigger: CTCTACGTCAGTCATTCCGTCGGATGCGTCGCAGCAGAGTGTCCAGTCATAAACGGCGGCCTGGTGGCCCCACAGGCGAGGTGAGGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCACAGGTGCAGGCTATaGTCATCCAGCAGAGTGACC +
Preference number: 5 (lower is better)
Translates to: RPRWELPSPEARSSNRKVHRCRL*SSSRVT
Trigger: GGTCACTCTGCTGGATGACAATAGCCTGCACCTGTG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAACACAGGTGCAGGCTATaGTCATCCAGCAGAGTGACC +
Preference number: 5 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQHRCRL*SSSRVT
Trigger: GGTCACTCTGCTGGATGACAATAGCCTGCACCTGTG...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGTAGCCAATGAGGATTaGGTTGGGGTCTCGAGGGTG +
Preference number: 5 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWVANED*VGVSRV
Trigger: CACCCTCGAGACCCCAACCAAATCCTCATTGGCTAC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGTAGCCAATGAGGATTaGGTTGGGGTCTCGAGGGTG +
Preference number: 5 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQVANED*VGVSRV
Trigger: CACCCTCGAGACCCCAACCAAATCCTCATTGGCTAC...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCAATTGGTGGCTCCCTaGCATGTCTGGGCTCTTCGA +
Preference number: 5 (lower is better)
Translates to: RPRWELPSPEARSSNRKVQLVAP*HVWALR
Trigger: TCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGAGTTTGGCGCTCACCTaGGGCAGTGTGAATACCTTG +
Preference number: 5 (lower is better)
Translates to: GRPRWELPSPEARSSNRKSLALT*GSVNTL
Trigger: CAAGGTATTCACACTGCCCAAGGTGAGCGCCAAACT...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGAGCTTCAGCTTCAGTTaGGCGCTCACCTTGGGCAGT +
Preference number: 5 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWSFSFS*ALTLGS
Trigger: ACTGCCCAAGGTGAGCGCCAAACTGAAGCTGAAGCT...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGTTCAACCAGCCACTaGGTGGAGAGAGAAAAGCGC +
Preference number: 5 (lower is better)
Translates to: RPRWELPSPEARSSNRKVGSTSH*VEREKR
Trigger: GCGCTTTTCTCTCTCCACCAAGTGGCTGGTTGAACC...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGGGCCGGTTGTGCTTCTaGGCTTTGGTTGAATCCACC +
Preference number: 5 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWGRLCF*ALVEST
Trigger: GGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCC...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGCCTGAGGAGGTCATTTaGAGGCCTGTGCCATTGCCA +
Preference number: 5 (lower is better)
Translates to: RPRWELPSPEARSSNRKVPEEVI*RPVPLP
Trigger: TGGCAATGGCACAGGCCTCAAAATGACCTCCTCAGG...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGGCCTGAGGAGGTCATTTaGAGGCCTGTGCCATTGCCA +
Preference number: 5 (lower is better)
Translates to: GPGGSSPLLRPGAATGRWPEEVI*RPVPLP
Trigger: TGGCAATGGCACAGGCCTCAAAATGACCTCCTCAGG...CCACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAACCTGAGGAGGTCATTTaGAGGCCTGTGCCATTGCCA +
Preference number: 5 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQPEEVI*RPVPLP
Trigger: TGGCAATGGCACAGGCCTCAAAATGACCTCCTCAGG...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS GCA 90 bp TGTCGTGCAGCGTGCGGAACCCCGGGAGCTGCACCACAAACACGTTaGCGCTCTCGGTGCCCAGGTAGAGCAGTTCTCCGGAAGAGTGAG +
Preference number: 5 (lower is better)
Translates to: CRAACGTPGAAPQTR*RSRCPGRAVLRKSE
Trigger: CTCACTCTTCCGGAGAACTGCTCTACCTGGGCACCGAGAGCGGCAACGTGTTTGTGGTGCAGCTCCCGGGGTTCCGCACGCTGCACGACA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 90 bp CTGGATTCAGATCCTGAGGGAGAGCTGTATGGTCCTGTAGATGGCTaGTCTGAGCCTGGGGCCTCACCTCGCCTGTGGGGCCACCAGGCC +
Preference number: 5 (lower is better)
Translates to: LDSDPEGELYGPVDG*SEPGASPRLWGHQA
Trigger: GGCCTGGTGGCCCCACAGGCGAGGTGAGGCCCCAGGCTCAGAGCAGCCATCTACAGGACCATACAGCTCTCCCTCAGGATCTGAATCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGGTGAGTTTGGCGCTCACCTaGGGCAGTGTGAATACCTTG +
Preference number: 5 (lower is better)
Translates to: RPRWELPSPEARSSNRKVSLALT*GSVNTL
Trigger: CAAGGTATTCACACTGCCCAAGGTGAGCGCCAAACT...CACCTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 90 bp GGCGAGCCTCCTCTGGCAACCATTGCAGCACCTCATCTGAACAGATaGTCCTGTCGTGCAGCGTGCGGAACCCCGGGAGCTGCACCACAA +
Preference number: 5 (lower is better)
Translates to: GEPPLATIAAPHLNR*SCRAACGTPGAAPQ
Trigger: TTGTGGTGCAGCTCCCGGGGTTCCGCACGCTGCACGACAGGACCATCTGTTCAGATGAGGTGCTGCAATGGTTGCCAGAGGAGGCTCGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 90 bp GTGCCACCATCTATGGGCCACTCCATGGTGGAGAAGTGTGAGTTCTaGCGGCTGCCCGCGGCGATGATGCGTTCCCATAGCTTCAGGGGG +
Preference number: 5 (lower is better)
Translates to: VPPSMGHSMVEKCEF*RLPAAMMRSHSFRG
Trigger: CCCCCTGAAGCTATGGGAACGCATCATCGCCGCGGGCAGCCGCCAGAACTCACACTTCTCCACCATGGAGTGGCCCATAGATGGTGGCAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAAACCTTGGCCATATTaGGTGAAGACACAGGAAGCT +
Preference number: 5 (lower is better)
Translates to: KVARALAAPGPAWAGKALKPWPY*VKTQEA
Trigger: AGCTTCCTGTGTCTTCACCAAATATGGCCAAGGTTT...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS TCA 90 bp ACTCCATGGTGGAGAAGTGTGAGTTCTGGCGGCTGCCCGCGGCGATaGTGCGTTCCCATAGCTTCAGGGGGATGTTGGAGACGTGGTGGG +
Preference number: 5 (lower is better)
Translates to: TPWWRSVSSGGCPRR*CVPIASGGCWRRGG
Trigger: CCCACCACGTCTCCAACATCCCCCTGAAGCTATGGGAACGCATCATCGCCGCGGGCAGCCGCCAGAACTCACACTTCTCCACCATGGAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS TCA 90 bp CCCCCTCCAGCGTGCTCTGGATTTCCTTTAGGACCCAGGCGTCATTaGGCAGCGCGTGCTCCATCACTGGGCCCGGCTTCTTCTCATCTC +
Preference number: 5 (lower is better)
Translates to: PPPACSGFPLGPRRH*AARAPSLGPASSHL
Trigger: GAGATGAGAAGAAGCCGGGCCCAGTGATGGAGCACGCGCTGCTCAATGACGCCTGGGTCCTAAAGGAAATCCAGAGCACGCTGGAGGGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 90 bp ACCATTGCAGCACCTCATCTGAACAGATGGTCCTGTCGTGCAGCGTaGGGAACCCCGGGAGCTGCACCACAAACACGTTGCCGCTCTCGG +
Preference number: 5 (lower is better)
Translates to: TIAAPHLNRWSCRAA*GTPGAAPQTRCRSR
Trigger: CCGAGAGCGGCAACGTGTTTGTGGTGCAGCTCCCGGGGTTCCGCACGCTGCACGACAGGACCATCTGTTCAGATGAGGTGCTGCAATGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 90 bp TTGCTCCTCCGACACCACAAGCAATTGGTGGCTCCCTTGCATGTCTaGGCTCTTCGACAGGTCATGGGCGACTTCCAGGGGCTCGGGGAG +
Preference number: 5 (lower is better)
Translates to: LLLRHHKQLVAPLHV*ALRQVMGDFQGLGE
Trigger: CTCCCCGAGCCCCTGGAAGTCGCCCATGACCTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTCGGAGGAGCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCAGTAGTAAACCTTGGCCATATTaGGTGAAGACACAGGAAGCT +
Preference number: 5 (lower is better)
Translates to: ARALAAPGPAWAGKALSSKPWPY*VKTQEA
Trigger: AGCTTCCTGTGTCTTCACCAAATATGGCCAAGGTTT...ACTACTGAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS TCA 90 bp GCACGGGCGCCAACTCCATGTTCTGCAGGCCCGTCCGCTCAGCCTTaGTATTCACAGCCTGGGCCTGCGCTTGATCTGGATTCAGATCCT +
Preference number: 5 (lower is better)
Translates to: ARAPTPCSAGPSAQP*YSQPGPALDLDSDP
Trigger: AGGATCTGAATCCAGATCAAGCGCAGGCCCAGGCTGTGAATATCAAGGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGGCGCCCGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177736.8
CDS GCA 90 bp TGCGGAACCCCGGGAGCTGCACCACAAACACGTTGCCGCTCTCGGTaGCCAGGTAGAGCAGTTCTCCGGAAGAGTGAGGTAGAATCTCAG +
Preference number: 5 (lower is better)
Translates to: CGTPGAAPQTRCRSR*PGRAVLRKSEVESQ
Trigger: CTGAGATTCTACCTCACTCTTCCGGAGAACTGCTCTACCTGGGCACCGAGAGCGGCAACGTGTTTGTGGTGCAGCTCCCGGGGTTCCGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 90 bp TCTGGCAACCATTGCAGCACCTCATCTGAACAGATGGTCCTGTCGTaGAGCGTGCGGAACCCCGGGAGCTGCACCACAAACACGTTGCCG +
Preference number: 5 (lower is better)
Translates to: SGNHCSTSSEQMVLS*SVRNPGSCTTNTLP
Trigger: CGGCAACGTGTTTGTGGTGCAGCTCCCGGGGTTCCGCACGCTGCACGACAGGACCATCTGTTCAGATGAGGTGCTGCAATGGTTGCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 90 bp ACCATCTCAAACACTCGCCGGTGGCGAGCCTCCTCTGGCAACCATTaGAGCACCTCATCTGAACAGATGGTCCTGTCGTGCAGCGTGCGG +
Preference number: 5 (lower is better)
Translates to: TISNTRRWRASSGNH*STSSEQMVLSCSVR
Trigger: CCGCACGCTGCACGACAGGACCATCTGTTCAGATGAGGTGCTGCAATGGTTGCCAGAGGAGGCTCGCCACCGGCGAGTGTTTGAGATGGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 90 bp GCACCTGCCCTGCCGTGCCTGCCACAGCCAGGTAGCCGCTGTATTTaGAGAGGAAAATCTTCTGGATGCCTAGCCGCGGATCATCGCTGT +
Preference number: 5 (lower is better)
Translates to: APALPCLPQPGSRCI*RGKSSGCLAADHRC
Trigger: ACAGCGATGATCCGCGGCTAGGCATCCAGAAGATTTTCCTCTGCAAATACAGCGGCTACCTGGCTGTGGCAGGCACGGCAGGGCAGGTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp CAACAGGAAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAAAACCTTGGCCATATTaGGTGAAGACACAGGAAGCT +
Preference number: 5 (lower is better)
Translates to: QQEGGQGTGSPWPGLGWQKPWPY*VKTQEA
Trigger: AGCTTCCTGTGTCTTCACCAAATATGGCCAAGGTTT...TTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTTCCTGTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp AAGGTGGCCAGGGCACTGGCAGCCCCTGGCCCGGCTTGGGCTGGCAAGGCCCTCTATCAGATAGAAACCTaGGCCATATTTGGTGAAGAC +
Preference number: 5 (lower is better)
Translates to: KVARALAAPGPAWAGKALYQIET*AIFGED
Trigger: GTCTTCACCAAATATGGCCAAGGTTTCTATCTGATA...GAGGGCCTTGCCAGCCCAAGCCGGGCCAGGGGCTGCCAGTGCCCTGGCCACCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS TCA 90 bp CCCTCAGGTAGGTATCAGCGAAATAGAGGGTCCGGACAAAGCCAGTaGAGGAGTCCTCCGCGGAGCGAGCCTCAATCTTCCGTTGCACGG +
Preference number: 5 (lower is better)
Translates to: PSGRYQRNRGSGQSQ*RSPPRSEPQSSVAR
Trigger: CCGTGCAACGGAAGATTGAGGCTCGCTCCGCGGAGGACTCCTTCACTGGCTTTGTCCGGACCCTCTATTTCGCTGATACCTACCTGAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 90 bp AGTGACCAGCTGACACTGACCAGGCAGGAAGTGGATCTGCAGCACTaGGTTGTTCTCCTTGTGAAGGCCCATGAACTCTACCCCGGGGGC +
Preference number: 5 (lower is better)
Translates to: SDQLTLTRQEVDLQH*VVLLVKAHELYPGG
Trigger: GCCCCCGGGGTAGAGTTCATGGGCCTTCACAAGGAGAACAACGCAGTGCTGCAGATCCACTTCCTGCCTGGTCAGTGTCAGCTGGTCACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000103032.11
ENSMUST00000133250.8
ENSMUST00000137900.2
ENSMUST00000155878.8
ENSMUST00000172552.8
ENSMUST00000173289.8
ENSMUST00000177736.8
CDS-3UTR CAA 90 bp GGGCGGCCCCGGTGGGAGCTCCCCTCTCCTGAGGCCAGGAGCAGCAACAGGAAGTATCAGATAGAAACCTaGGCCATATTTGGTGAAGAC +
Preference number: 5 (lower is better)
Translates to: GRPRWELPSPEARSSNRKYQIET*AIFGED
Trigger: GTCTTCACCAAATATGGCCAAGGTTTCTATCTGATA...CTTCCTGTTGCTGCTCCTGGCCTCAGGAGAGGGGAGCTCCCACCGGGGCCGCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS TCA 90 bp CTCTGCTGCGACGCATCCGACGGAATGACTGACGTAGAGACTTCTTaGGGGACTTTACTCGAGACAGAGGGCCCTCCAAGGCCAGCTGGT +
Preference number: 5 (lower is better)
Translates to: LCCDASDGMTDVETS*GTLLETEGPPRPAG
Trigger: ACCAGCTGGCCTTGGAGGGCCCTCTGTCTCGAGTAAAGTCCCTCAAGAAGTCTCTACGTCAGTCATTCCGTCGGATGCGTCGCAGCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 90 bp ACCTTGAATTGCTCCTCCGACACCACAAGCAATTGGTGGCTCCCTTaGATGTCTGGGCTCTTCGACAGGTCATGGGCGACTTCCAGGGGC +
Preference number: 5 (lower is better)
Translates to: TLNCSSDTTSNWWLP*MSGLFDRSWATSRG
Trigger: GCCCCTGGAAGTCGCCCATGACCTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTCGGAGGAGCAATTCAAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 90 bp GGCCTGTGCCATTGCCATTGCTGGGCCGGTTGTGCTTCTTGGCTTTaGTTGAATCCACCAAACACCGGGGTTCAACCAGCCACTTGGTGG +
Preference number: 5 (lower is better)
Translates to: GLCHCHCWAGCASWL*LNPPNTGVQPATWW
Trigger: CCACCAAGTGGCTGGTTGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS GCA 90 bp GGTGAGGATGCCAATTGCCATAGCTCCTCCGGTCCCCCTCCAGCGTaGTCTGGATTTCCTTTAGGACCCCATCTCCATCACTTTGGCTCT +
Preference number: 5 (lower is better)
Translates to: GEDANCHSSSGPPPA*SGFPLGPHLHHFGS
Trigger: AGAGCCAAAGTGATGGAGATGGGGTCCTAAAGGAAATCCAGAGCACGCTGGAGGGGGACCGGAGGAGCTATGGCAATTGGCATCCTCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128826.2
CDS TCA 90 bp TGTGCCATTGCCATTGCTGGGCCGGTTGTGCTTCTTGGCTTTGGTTaGATCCACCAAACACCGGGGTTCAACCAGCCACTTGGTGGAGAG +
Preference number: 5 (lower is better)
Translates to: CAIAIAGPVVLLGFG*IHQTPGFNQPLGGE
Trigger: CTCTCCACCAAGTGGCTGGTTGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CCA 90 bp GGCAGTGTGAATACCTTGAATTGCTCCTCCGACACCACAAGCAATTaGTGGCTCCCTTGCATGTCTGGGCTCTTCGACAGGTCATGGGCG +
Preference number: 5 (lower is better)
Translates to: GSVNTLNCSSDTTSN*WLPCMSGLFDRSWA
Trigger: CGCCCATGACCTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTCGGAGGAGCAATTCAAGGTATTCACACTGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 90 bp GAGGTCATTTTGAGGCCTGTGCCATTGCCATTGCTGGGCCGGTTGTaGTTCTTGGCTTTGGTTGAATCCACCAAACACCGGGGTTCAACC +
Preference number: 5 (lower is better)
Translates to: EVILRPVPLPLLGRL*FLALVESTKHRGST
Trigger: GGTTGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAGGCCTCAAAATGACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CCA 90 bp AGTGTGAATACCTTGAATTGCTCCTCCGACACCACAAGCAATTGGTaGCTCCCTTGCATGTCTGGGCTCTTCGACAGGTCATGGGCGACT +
Preference number: 5 (lower is better)
Translates to: SVNTLNCSSDTTSNW*LPCMSGLFDRSWAT
Trigger: AGTCGCCCATGACCTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTCGGAGGAGCAATTCAAGGTATTCACACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 90 bp TTTAGGACCCCATCTCCATCACTTTGGCTCTTTGAGTTCCTGACGTaGCCTGAGGAGGTCATTTTGAGGCCTGTGCCATTGCCATTGCTG +
Preference number: 5 (lower is better)
Translates to: FRTPSPSLWLFEFLT*PEEVILRPVPLPLL
Trigger: CAGCAATGGCAATGGCACAGGCCTCAAAATGACCTCCTCAGGCCACGTCAGGAACTCAAAGAGCCAAAGTGATGGAGATGGGGTCCTAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128826.2
CDS CCA 90 bp TCCAGCGTGCTCTGGATTTCCTTTAGGACCCCATCTCCATCACTTTaGCTCTTTGAGTTCCTGACGTGGCCTGAGGAGGTCATTTTGAGG +
Preference number: 5 (lower is better)
Translates to: SSVLWISFRTPSPSL*LFEFLTWPEEVILR
Trigger: CCTCAAAATGACCTCCTCAGGCCACGTCAGGAACTCAAAGAGCCAAAGTGATGGAGATGGGGTCCTAAAGGAAATCCAGAGCACGCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128826.2
CDS CCA 90 bp TGGCTTTGGTTGAATCCACCAAACACCGGGGTTCAACCAGCCACTTaGTGGAGAGAGAAAAGCGCTCGAACTCCGAAGGTGATATCAGAT +
Preference number: 5 (lower is better)
Translates to: WLWLNPPNTGVQPAT*WREKSARTPKVISD
Trigger: ATCTGATATCACCTTCGGAGTTCGAGCGCTTTTCTCTCTCCACCAAGTGGCTGGTTGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CCA 90 bp CTTTGGTTGAATCCACCAAACACCGGGGTTCAACCAGCCACTTGGTaGAGAGAGAAAAGCGCTCGAACTCCGAAGGTGATATCAGATAGA +
Preference number: 5 (lower is better)
Translates to: LWLNPPNTGVQPATW*REKSARTPKVISDR
Trigger: TCTATCTGATATCACCTTCGGAGTTCGAGCGCTTTTCTCTCTCCACCAAGTGGCTGGTTGAACCCCGGTGTTTGGTGGATTCAACCAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS TCA 72 bp CGGGCCACTGGCAGTGGCTGCCGTCGGAGTGGCAGGTaGCAATCAGGCAGCCATCCCGCTGCCAGCTGGCAT +
Preference number: 6 (lower is better)
Translates to: RATGSGCRRSGR*QSGSHPAASWH
Trigger: ATGCCAGCTGGCAGCGGGATGGCTGCCTGATTGTCACCTGCCACTCCGACGGCAGCCACTGCCAGTGGCCCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp CCCGTCCGCTCAGCCTTGATATTCACAGCCTGGGCCTaGGCCTCGCCTGTGGGGCCACCAGGCCGCCGTTTA +
Preference number: 6 (lower is better)
Translates to: PVRSALIFTAWA*ASPVGPPGRRL
Trigger: TAAACGGCGGCCTGGTGGCCCCACAGGCGAGGCGCAGGCCCAGGCTGTGAATATCAAGGCTGAGCGGACGGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103032.11
CDS GCA 72 bp CCAGGTGGTGCTCCCCATAGTCCTCAGCCCTGCAGCTaGCAAAGTGGGCGACACCGACTCGCCGCACCCGTG +
Preference number: 6 (lower is better)
Translates to: PGGAPHSPQPCS*QSGRHRLAAPV
Trigger: CACGGGTGCGGCGAGTCGGTGTCGCCCACTTTGGCAGCTGCAGGGCTGAGGACTATGGGGAGCACCACCTGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 72 bp CTGGAGACGGGCCACTGGCAGTGGCTGCCGTCGGAGTaGCAGGTGACAATCAGGCAGCCATCCCGCTGCCAG +
Preference number: 6 (lower is better)
Translates to: LETGHWQWLPSE*QVTIRQPSRCQ
Trigger: CTGGCAGCGGGATGGCTGCCTGATTGTCACCTGCCACTCCGACGGCAGCCACTGCCAGTGGCCCGTCTCCAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 90 bp TGCACGGGCGCCAACTCCATGTTCTGCAGGCCCGTCCGCTCAGCCTaGATATTCACAGCCTGGGCCTGCGCCTCGCCTGTGGGGCCACCA +
Preference number: 6 (lower is better)
Translates to: CTGANSMFCRPVRSA*IFTAWACASPVGPP
Trigger: TGGTGGCCCCACAGGCGAGGCGCAGGCCCAGGCTGTGAATATCAAGGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGGCGCCCGTGCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103032.11
CDS TCA 72 bp ACAGCTGGGGGCTGGCACTGCACCAGTACAAAGGGCTaGAATCCCGCCTCAAAGCACACGGGCCCCGGGCGG +
Preference number: 6 (lower is better)
Translates to: TAGGWHCTSTKG*NPASKHTGPGR
Trigger: CCGCCCGGGGCCCGTGTGCTTTGAGGCGGGATTTCAGCCCTTTGTACTGGTGCAGTGCCAGCCCCCAGCTGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp GCGTGCGGAACCCCGGGAGCTGCACCACAAACACGTTaGCGCTCTCGGTGCCCAGGTAGAGCAGTTCTCCGG +
Preference number: 6 (lower is better)
Translates to: ACGTPGAAPQTR*RSRCPGRAVLR
Trigger: CCGGAGAACTGCTCTACCTGGGCACCGAGAGCGGCAACGTGTTTGTGGTGCAGCTCCCGGGGTTCCGCACGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp ATGGTCCTGTCGTGCAGCGTGCGGAACCCCGGGAGCTaGACCACAAACACGTTGCCGCTCTCGGTGCCCAGG +
Preference number: 6 (lower is better)
Translates to: MVLSCSVRNPGS*TTNTLPLSVPR
Trigger: CCTGGGCACCGAGAGCGGCAACGTGTTTGTGGTGCAGCTCCCGGGGTTCCGCACGCTGCACGACAGGACCAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp CGCGCAGGGAAAAGGCGTAGACGGTGCCTCCGTTGGTaGCAGCCCACAGGGAGGGACAGTGGCGGGAACTGT +
Preference number: 6 (lower is better)
Translates to: RAGKRRRRCLRW*QPTGRDSGGNC
Trigger: ACAGTTCCCGCCACTGTCCCTCCCTGTGGGCTGGCACCAACGGAGGCACCGTCTACGCCTTTTCCCTGCGCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp CTGCAGGAGGCACGCGCAGGGAAAAGGCGTAGACGGTaGCTCCGTTGGTGCCAGCCCACAGGGAGGGACAGT +
Preference number: 6 (lower is better)
Translates to: LQEARAGKRRRR*LRWCQPTGRDS
Trigger: ACTGTCCCTCCCTGTGGGCTGGCACCAACGGAGGCACCGTCTACGCCTTTTCCCTGCGCGTGCCTCCTGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp GCACTGCCAGGTGGTGCTCCCCATAGTCCTCAGCCCTaGAGCTGCCAAAGTGGGCGACACCGACTCGCCGCA +
Preference number: 6 (lower is better)
Translates to: ALPGGAPHSPQP*SCQSGRHRLAA
Trigger: TGCGGCGAGTCGGTGTCGCCCACTTTGGCAGCTGCAGGGCTGAGGACTATGGGGAGCACCACCTGGCAGTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 72 bp GATGGCTGCTCTGAGCCTGGGGCCTCACCTCGCCTGTaGGGCCACCAGGCCGCCGTTTATGACTGGACACTC +
Preference number: 6 (lower is better)
Translates to: DGCSEPGASPRL*GHQAAVYDWTL
Trigger: GAGTGTCCAGTCATAAACGGCGGCCTGGTGGCCCCACAGGCGAGGTGAGGCCCCAGGCTCAGAGCAGCCATC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177736.8
CDS TCA 72 bp TGCGCCTCGCCTGTGGGGCCACCAGGCCGCCGTTTATaGCTGGACACTCTGCTGCGACGCATCCGACGGAAT +
Preference number: 6 (lower is better)
Translates to: CASPVGPPGRRL*LDTLLRRIRRN
Trigger: ATTCCGTCGGATGCGTCGCAGCAGAGTGTCCAGTCATAAACGGCGGCCTGGTGGCCCCACAGGCGAGGCGCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103032.11
CDS TCA 72 bp GCTGCCAAAGTGGGCGACACCGACTCGCCGCACCCGTaGGCCCTCCAGGGCCGTCAGCTTCAGCTTCAGTTT +
Preference number: 6 (lower is better)
Translates to: AAKVGDTDSPHP*ALQGRQLQLQF
Trigger: AAACTGAAGCTGAAGCTGACGGCCCTGGAGGGCTCACGGGTGCGGCGAGTCGGTGTCGCCCACTTTGGCAGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 72 bp GGGTTCTGGGTGTCACTGGAGACGGGCCACTGGCAGTaGCTGCCGTCGGAGTGGCAGGTGACAATCAGGCAG +
Preference number: 6 (lower is better)
Translates to: GFWVSLETGHWQ*LPSEWQVTIRQ
Trigger: CTGCCTGATTGTCACCTGCCACTCCGACGGCAGCCACTGCCAGTGGCCCGTCTCCAGTGACACCCAGAACCC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 72 bp CTGACGTCCTCCCGGCGGATGCAGCTGTACCGCACCTaGGGCTTGAGCAGGGGCATTGAGACCACCTGGATG +
Preference number: 6 (lower is better)
Translates to: LTSSRRMQLYRT*GLSRGIETTWM
Trigger: CATCCAGGTGGTCTCAATGCCCCTGCTCAAGCCCCAGGTGCGGTACAGCTGCATCCGCCGGGAGGACGTCAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS TCA 72 bp CCAACTCCATGTTCTGCAGGCCCGTCCGCTCAGCCTTaGTATTCACAGCCTGGGCCTGCGCCTCGCCTGTGG +
Preference number: 6 (lower is better)
Translates to: PTPCSAGPSAQP*YSQPGPAPRLW
Trigger: CCACAGGCGAGGCGCAGGCCCAGGCTGTGAATATCAAGGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103032.11
CDS TCA 72 bp CTCACCTCGCCTGTGGGGCCACCAGGCCGCCGTTTATaGCTGGACACTCTGCTGCGACGCATCCGACGGAAT +
Preference number: 6 (lower is better)
Translates to: LTSPVGPPGRRL*LDTLLRRIRRN
Trigger: ATTCCGTCGGATGCGTCGCAGCAGAGTGTCCAGTCATAAACGGCGGCCTGGTGGCCCCACAGGCGAGGTGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177736.8
CDS GCA 72 bp AAGGAGTCCTCCGCGGAGCGAGCCTCAATCTTCCGTTaGACGGGCGCCAACTCCATGTTCTGCAGGCCCGTC +
Preference number: 6 (lower is better)
Translates to: KESSAERASIFR*TGANSMFCRPV
Trigger: GACGGGCCTGCAGAACATGGAGTTGGCGCCCGTGCAACGGAAGATTGAGGCTCGCTCCGCGGAGGACTCCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp GATCCTGAGGGAGAGCTGTATGGTCCTGTAGATGGCTaGTCTGAGCCTGGGGCCTCACCTCGCCTGTGGGGC +
Preference number: 6 (lower is better)
Translates to: DPEGELYGPVDG*SEPGASPRLWG
Trigger: GCCCCACAGGCGAGGTGAGGCCCCAGGCTCAGAGCAGCCATCTACAGGACCATACAGCTCTCCCTCAGGATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177736.8
CDS CCA 72 bp CCTCGCCTGTGGGGCCACCAGGCCGCCGTTTATGACTaGACACTCTGCTGCGACGCATCCGACGGAATGACT +
Preference number: 6 (lower is better)
Translates to: PRLWGHQAAVYD*TLCCDASDGMT
Trigger: AGTCATTCCGTCGGATGCGTCGCAGCAGAGTGTCCAGTCATAAACGGCGGCCTGGTGGCCCCACAGGCGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 72 bp GCCAACTCCATGTTCTGCAGGCCCGTCCGCTCAGCCTaGATATTCACAGCCTGGGCCTGCGCCTCGCCTGTG +
Preference number: 6 (lower is better)
Translates to: ANSMFCRPVRSA*IFTAWACASPV
Trigger: CACAGGCGAGGCGCAGGCCCAGGCTGTGAATATCAAGGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103032.11
CDS CAA 72 bp GAAGGAGTCCTCCGCGGAGCGAGCCTCAATCTTCCGTaGCACGGGCGCCAACTCCATGTTCTGCAGGCCCGT +
Preference number: 6 (lower is better)
Translates to: EGVLRGASLNLP*HGRQLHVLQAR
Trigger: ACGGGCCTGCAGAACATGGAGTTGGCGCCCGTGCAACGGAAGATTGAGGCTCGCTCCGCGGAGGACTCCTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 90 bp AAAGCCAGTGAAGGAGTCCTCCGCGGAGCGAGCCTCAATCTTCCGTaGCACGGGCGCCAACTCCATGTTCTGCAGGCCCGTCCGCTCAGC +
Preference number: 6 (lower is better)
Translates to: KASEGVLRGASLNLP*HGRQLHVLQARPLS
Trigger: GCTGAGCGGACGGGCCTGCAGAACATGGAGTTGGCGCCCGTGCAACGGAAGATTGAGGCTCGCTCCGCGGAGGACTCCTTCACTGGCTTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS TCA 72 bp GCCACCATCTATGGGCCACTCCATGGTGGAGAAGTGTaGGTTCTGGCGGCTGCCCGCGGCGATGATGCGTTC +
Preference number: 6 (lower is better)
Translates to: ATIYGPLHGGEV*VLAAARGDDAF
Trigger: GAACGCATCATCGCCGCGGGCAGCCGCCAGAACTCACACTTCTCCACCATGGAGTGGCCCATAGATGGTGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 72 bp AGGCCCATGAACTCTACCCCGGGGGCGCCATATAGCTaGACAGCTCCAGAGCGGGTTCCGATGGCCAGGATG +
Preference number: 6 (lower is better)
Translates to: RPMNSTPGAPYS*TAPERVPMARM
Trigger: CATCCTGGCCATCGGAACCCGCTCTGGAGCTGTCAAGCTATATGGCGCCCCCGGGGTAGAGTTCATGGGCCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000103032.11
ENSMUST00000133250.8
ENSMUST00000137900.2
ENSMUST00000155878.8
ENSMUST00000172552.8
ENSMUST00000173289.8
ENSMUST00000177736.8
CDS CAA 90 bp CGGCTGCCCGCGGCGATGATGCGTTCCCATAGCTTCAGGGGGATGTaGGAGACGTGGTGGGAGCAGGTGATAGCGGAACAGTGCAAGGAA +
Preference number: 6 (lower is better)
Translates to: RLPAAMMRSHSFRGM*ETWWEQVIAEQCKE
Trigger: TTCCTTGCACTGTTCCGCTATCACCTGCTCCCACCACGTCTCCAACATCCCCCTGAAGCTATGGGAACGCATCATCGCCGCGGGCAGCCG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS TCA 72 bp GCAGCTGTACCGCACCTGGGGCTTGAGCAGGGGCATTaGGACCACCTGGATGTCACCCAAGTTGGTGAGCAC +
Preference number: 6 (lower is better)
Translates to: AAVPHLGLEQGH*DHLDVTQVGEH
Trigger: GTGCTCACCAACTTGGGTGACATCCAGGTGGTCTCAATGCCCCTGCTCAAGCCCCAGGTGCGGTACAGCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS TCA 72 bp GCGTGCTCTGGATTTCCTTTAGGACCCAGGCGTCATTaGGCAGCGCGTGCTCCATCACTGGGCCCGGCTTCT +
Preference number: 6 (lower is better)
Translates to: ACSGFPLGPRRH*AARAPSLGPAS
Trigger: AGAAGCCGGGCCCAGTGATGGAGCACGCGCTGCTCAATGACGCCTGGGTCCTAAAGGAAATCCAGAGCACGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp CCGGGAGCTGCACCACAAACACGTTGCCGCTCTCGGTaGCCAGGTAGAGCAGTTCTCCGGAAGAGTGAGGTA +
Preference number: 6 (lower is better)
Translates to: PGAAPQTRCRSR*PGRAVLRKSEV
Trigger: TACCTCACTCTTCCGGAGAACTGCTCTACCTGGGCACCGAGAGCGGCAACGTGTTTGTGGTGCAGCTCCCGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp GCACCTCATCTGAACAGATGGTCCTGTCGTGCAGCGTaGGGAACCCCGGGAGCTGCACCACAAACACGTTGC +
Preference number: 6 (lower is better)
Translates to: APHLNRWSCRAA*GTPGAAPQTRC
Trigger: GCAACGTGTTTGTGGTGCAGCTCCCGGGGTTCCGCACGCTGCACGACAGGACCATCTGTTCAGATGAGGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp TGGGGCCACCAGGCCGCCGTTTATGACTGGACACTCTaGTGCGACGCATCCGACGGAATGACTGACGTAGAG +
Preference number: 6 (lower is better)
Translates to: WGHQAAVYDWTL*CDASDGMTDVE
Trigger: CTCTACGTCAGTCATTCCGTCGGATGCGTCGCAGCAGAGTGTCCAGTCATAAACGGCGGCCTGGTGGCCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 72 bp CCTCTGGCAACCATTGCAGCACCTCATCTGAACAGATaGTCCTGTCGTGCAGCGTGCGGAACCCCGGGAGCT +
Preference number: 6 (lower is better)
Translates to: PLATIAAPHLNR*SCRAACGTPGA
Trigger: AGCTCCCGGGGTTCCGCACGCTGCACGACAGGACCATCTGTTCAGATGAGGTGCTGCAATGGTTGCCAGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 72 bp TCAATGACACGGGAGGTGAAGTCGAAGGCCGTCTGCTaGCCGTTGTGGACCACTGAGATGCAGTGGCGGTCC +
Preference number: 6 (lower is better)
Translates to: SMTREVKSKAVC*PLWTTEMQWRS
Trigger: GGACCGCCACTGCATCTCAGTGGTCCACAACGGCCAGCAGACGGCCTTCGACTTCACCTCCCGTGTCATTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 72 bp TCTATGGGCCACTCCATGGTGGAGAAGTGTGAGTTCTaGCGGCTGCCCGCGGCGATGATGCGTTCCCATAGC +
Preference number: 6 (lower is better)
Translates to: SMGHSMVEKCEF*RLPAAMMRSHS
Trigger: GCTATGGGAACGCATCATCGCCGCGGGCAGCCGCCAGAACTCACACTTCTCCACCATGGAGTGGCCCATAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 72 bp AGCGTGCTCTGGATTTCCTTTAGGACCCAGGCGTCATaGAGCAGCGCGTGCTCCATCACTGGGCCCGGCTTC +
Preference number: 6 (lower is better)
Translates to: SVLWISFRTQAS*SSACSITGPGF
Trigger: GAAGCCGGGCCCAGTGATGGAGCACGCGCTGCTCAATGACGCCTGGGTCCTAAAGGAAATCCAGAGCACGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 90 bp TCCCCCTCCAGCGTGCTCTGGATTTCCTTTAGGACCCAGGCGTCATaGAGCAGCGCGTGCTCCATCACTGGGCCCGGCTTCTTCTCATCT +
Preference number: 6 (lower is better)
Translates to: SPSSVLWISFRTQAS*SSACSITGPGFFSS
Trigger: AGATGAGAAGAAGCCGGGCCCAGTGATGGAGCACGCGCTGCTCAATGACGCCTGGGTCCTAAAGGAAATCCAGAGCACGCTGGAGGGGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS TCA 72 bp GCCACGCAATGTGAAGCTCTCTTCTTCCTGCAGCTCTaGCACCCCGCCCTTGACCTTCAGGCTCCACAGGTG +
Preference number: 6 (lower is better)
Translates to: ATQCEALFFLQL*HPALDLQAPQV
Trigger: CACCTGTGGAGCCTGAAGGTCAAGGGCGGGGTGTCAGAGCTGCAGGAAGAAGAGAGCTTCACATTGCGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000103032.11
ENSMUST00000133250.8
ENSMUST00000137900.2
ENSMUST00000155878.8
ENSMUST00000173289.8
ENSMUST00000177736.8
CDS TCA 72 bp TGGAGAAGTGTGAGTTCTGGCGGCTGCCCGCGGCGATaGTGCGTTCCCATAGCTTCAGGGGGATGTTGGAGA +
Preference number: 6 (lower is better)
Translates to: WRSVSSGGCPRR*CVPIASGGCWR
Trigger: TCTCCAACATCCCCCTGAAGCTATGGGAACGCATCATCGCCGCGGGCAGCCGCCAGAACTCACACTTCTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS TCA 72 bp GGGGCATTGAGACCACCTGGATGTCACCCAAGTTGGTaGGCACTGCCAGGTGGTGCTCCCCATAGTCCTCAG +
Preference number: 6 (lower is better)
Translates to: GALRPPGCHPSW*ALPGGAPHSPQ
Trigger: CTGAGGACTATGGGGAGCACCACCTGGCAGTGCTCACCAACTTGGGTGACATCCAGGTGGTCTCAATGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS GCA 72 bp CATTGCAGCACCTCATCTGAACAGATGGTCCTGTCGTaGAGCGTGCGGAACCCCGGGAGCTGCACCACAAAC +
Preference number: 6 (lower is better)
Translates to: HCSTSSEQMVLS*SVRNPGSCTTN
Trigger: GTTTGTGGTGCAGCTCCCGGGGTTCCGCACGCTGCACGACAGGACCATCTGTTCAGATGAGGTGCTGCAATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp AACACTCGCCGGTGGCGAGCCTCCTCTGGCAACCATTaGAGCACCTCATCTGAACAGATGGTCCTGTCGTGC +
Preference number: 6 (lower is better)
Translates to: NTRRWRASSGNH*STSSEQMVLSC
Trigger: GCACGACAGGACCATCTGTTCAGATGAGGTGCTGCAATGGTTGCCAGAGGAGGCTCGCCACCGGCGAGTGTT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp CCAATGAGGATTTGGTTGGGGTCTCGAGGGTGCTCCTaGAGAGCCTCCACCATCTCAAACACTCGCCGGTGG +
Preference number: 6 (lower is better)
Translates to: PMRIWLGSRGCS*RASTISNTRRW
Trigger: CCACCGGCGAGTGTTTGAGATGGTGGAGGCTCTGCAGGAGCACCCTCGAGACCCCAACCAAATCCTCATTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp AAGTCAATGACACGGGAGGTGAAGTCGAAGGCCGTCTaGTGGCCGTTGTGGACCACTGAGATGCAGTGGCGG +
Preference number: 6 (lower is better)
Translates to: KSMTREVKSKAV*WPLWTTEMQWR
Trigger: CCGCCACTGCATCTCAGTGGTCCACAACGGCCAGCAGACGGCCTTCGACTTCACCTCCCGTGTCATTGACTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp GGCCACCAGGCCGCCGTTTATGACTGGACACTCTGCTaGGACGCATCCGACGGAATGACTGACGTAGAGACT +
Preference number: 6 (lower is better)
Translates to: GHQAAVYDWTLC*DASDGMTDVET
Trigger: AGTCTCTACGTCAGTCATTCCGTCGGATGCGTCGCAGCAGAGTGTCCAGTCATAAACGGCGGCCTGGTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 72 bp CGACACCACAAGCAATTGGTGGCTCCCTTGCATGTCTaGGCTCTTCGACAGGTCATGGGCGACTTCCAGGGG +
Preference number: 6 (lower is better)
Translates to: RHHKQLVAPLHV*ALRQVMGDFQG
Trigger: CCCCTGGAAGTCGCCCATGACCTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS TCA 72 bp CCAACTCCATGTTCTGCAGGCCCGTCCGCTCAGCCTTaGTATTCACAGCCTGGGCCTGCGCTTGATCTGGAT +
Preference number: 6 (lower is better)
Translates to: PTPCSAGPSAQP*YSQPGPALDLD
Trigger: ATCCAGATCAAGCGCAGGCCCAGGCTGTGAATATCAAGGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177736.8
CDS GCA 72 bp TCAATCTTCCGTTGCACGGGCGCCAACTCCATGTTCTaGAGGCCCGTCCGCTCAGCCTTGATATTCACAGCC +
Preference number: 6 (lower is better)
Translates to: SIFRCTGANSMF*RPVRSALIFTA
Trigger: GGCTGTGAATATCAAGGCTGAGCGGACGGGCCTGCAGAACATGGAGTTGGCGCCCGTGCAACGGAAGATTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp CGCGCGATGCATCAGCTGGATCTCCTTGGCCTGCTCTaGCCGGACAGGTTCATCTGTTCTTCTTTCTGCAGG +
Preference number: 6 (lower is better)
Translates to: RAMHQLDLLGLL*PDRFICSSFCR
Trigger: CCTGCAGAAAGAAGAACAGATGAACCTGTCCGGGCAGAGCAGGCCAAGGAGATCCAGCTGATGCATCGCGCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp TGCTCCTCCGACACCACAAGCAATTGGTGGCTCCCTTaGATGTCTGGGCTCTTCGACAGGTCATGGGCGACT +
Preference number: 6 (lower is better)
Translates to: CSSDTTSNWWLP*MSGLFDRSWAT
Trigger: AGTCGCCCATGACCTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTCGGAGGAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp GCCAATTGCCATAGCTCCTCCGGTCCCCCTCCAGCGTaGTCTGGATTTCCTTTAGGACCCCATCTCCATCAC +
Preference number: 6 (lower is better)
Translates to: ANCHSSSGPPPA*SGFPLGPHLHH
Trigger: GTGATGGAGATGGGGTCCTAAAGGAAATCCAGAGCACGCTGGAGGGGGACCGGAGGAGCTATGGCAATTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000128826.2
CDS CCA 72 bp CGTTCCCATAGCTTCAGGGGGATGTTGGAGACGTGGTaGGAGCAGGTGATAGCGGAACAGTGCAAGGAAGCC +
Preference number: 6 (lower is better)
Translates to: RSHSFRGMLETW*EQVIAEQCKEA
Trigger: GGCTTCCTTGCACTGTTCCGCTATCACCTGCTCCCACCACGTCTCCAACATCCCCCTGAAGCTATGGGAACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 72 bp TTGCTCCTCCGACACCACAAGCAATTGGTGGCTCCCTaGCATGTCTGGGCTCTTCGACAGGTCATGGGCGAC +
Preference number: 6 (lower is better)
Translates to: LLLRHHKQLVAP*HVWALRQVMGD
Trigger: GTCGCCCATGACCTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTCGGAGGAGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 90 bp TACCTTGAATTGCTCCTCCGACACCACAAGCAATTGGTGGCTCCCTaGCATGTCTGGGCTCTTCGACAGGTCATGGGCGACTTCCAGGGG +
Preference number: 6 (lower is better)
Translates to: YLELLLRHHKQLVAP*HVWALRQVMGDFQG
Trigger: CCCCTGGAAGTCGCCCATGACCTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTCGGAGGAGCAATTCAAGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 90 bp AGGCCTGTGCCATTGCCATTGCTGGGCCGGTTGTGCTTCTTGGCTTaGGTTGAATCCACCAAACACCGGGGTTCAACCAGCCACTTGGTG +
Preference number: 6 (lower is better)
Translates to: RPVPLPLLGRLCFLA*VESTKHRGSTSHLV
Trigger: CACCAAGTGGCTGGTTGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS TCA 72 bp AGGAAGTGGATCTGCAGCACTGCGTTGTTCTCCTTGTaGAGGCCCATGAACTCTACCCCGGGGGCGCCATAT +
Preference number: 6 (lower is better)
Translates to: RKWICSTALFSL*RPMNSTPGAPY
Trigger: ATATGGCGCCCCCGGGGTAGAGTTCATGGGCCTTCACAAGGAGAACAACGCAGTGCTGCAGATCCACTTCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000103032.11
ENSMUST00000133250.8
ENSMUST00000137900.2
ENSMUST00000155878.8
ENSMUST00000172552.8
ENSMUST00000173289.8
ENSMUST00000177736.8
CDS TCA 72 bp GGCTCCACAGGTGCAGGCTATTGTCATCCAGCAGAGTaGCCAGCTGACACTGACCAGGCAGGAAGTGGATCT +
Preference number: 6 (lower is better)
Translates to: GSTGAGYCHPAE*PADTDQAGSGS
Trigger: AGATCCACTTCCTGCCTGGTCAGTGTCAGCTGGTCACTCTGCTGGATGACAATAGCCTGCACCTGTGGAGCC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000103032.11
ENSMUST00000133250.8
ENSMUST00000137900.2
ENSMUST00000155878.8
ENSMUST00000172552.8
ENSMUST00000173289.8
ENSMUST00000177736.8
CDS TCA 72 bp AGGTATCAGCGAAATAGAGGGTCCGGACAAAGCCAGTaGAGGAGTCCTCCGCGGAGCGAGCCTCAATCTTCC +
Preference number: 6 (lower is better)
Translates to: RYQRNRGSGQSQ*RSPPRSEPQSS
Trigger: GGAAGATTGAGGCTCGCTCCGCGGAGGACTCCTTCACTGGCTTTGTCCGGACCCTCTATTTCGCTGATACCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS GCA 72 bp ATTTCCTTTAGGACCCAGGCGTCATTGAGCAGCGCGTaGTCCATCACTGGGCCCGGCTTCTTCTCATCTCCA +
Preference number: 6 (lower is better)
Translates to: ISFRTQASLSSA*SITGPGFFSSP
Trigger: TGGAGATGAGAAGAAGCCGGGCCCAGTGATGGAGCACGCGCTGCTCAATGACGCCTGGGTCCTAAAGGAAAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 72 bp ACGTGGCCTGAGGAGGTCATTTTGAGGCCTGTGCCATaGCCATTGCTGGGCCGGTTGTGCTTCTTGGCTTTG +
Preference number: 6 (lower is better)
Translates to: TWPEEVILRPVP*PLLGRLCFLAL
Trigger: CAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAGGCCTCAAAATGACCTCCTCAGGCCACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CAA 72 bp CTCTTTGAGTTCCTGACGTGGCCTGAGGAGGTCATTTaGAGGCCTGTGCCATTGCCATTGCTGGGCCGGTTG +
Preference number: 6 (lower is better)
Translates to: LFEFLTWPEEVI*RPVPLPLLGRL
Trigger: CAACCGGCCCAGCAATGGCAATGGCACAGGCCTCAAAATGACCTCCTCAGGCCACGTCAGGAACTCAAAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CAA 90 bp GGGCAGTGTGAATACCTTGAATTGCTCCTCCGACACCACAAGCAATaGGTGGCTCCCTTGCATGTCTGGGCTCTTCGACAGGTCATGGGC +
Preference number: 6 (lower is better)
Translates to: GQCEYLELLLRHHKQ*VAPLHVWALRQVMG
Trigger: GCCCATGACCTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTCGGAGGAGCAATTCAAGGTATTCACACTGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 90 bp CTGTGCCATTGCCATTGCTGGGCCGGTTGTGCTTCTTGGCTTTGGTaGAATCCACCAAACACCGGGGTTCAACCAGCCACTTGGTGGAGA +
Preference number: 6 (lower is better)
Translates to: LCHCHCWAGCASWLW*NPPNTGVQPATWWR
Trigger: TCTCCACCAAGTGGCTGGTTGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CAA 90 bp GAGTTCCTGACGTGGCCTGAGGAGGTCATTTTGAGGCCTGTGCCATaGCCATTGCTGGGCCGGTTGTGCTTCTTGGCTTTGGTTGAATCC +
Preference number: 6 (lower is better)
Translates to: EFLTWPEEVILRPVP*PLLGRLCFLALVES
Trigger: GGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAGGCCTCAAAATGACCTCCTCAGGCCACGTCAGGAACTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS TCA 72 bp GACGCATCCGACGGAATGACTGACGTAGAGACTTCTTaGGGGACTTTACTCGAGACAGAGGGCCCTCCAAGG +
Preference number: 6 (lower is better)
Translates to: DASDGMTDVETS*GTLLETEGPPR
Trigger: CCTTGGAGGGCCCTCTGTCTCGAGTAAAGTCCCTCAAGAAGTCTCTACGTCAGTCATTCCGTCGGATGCGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 72 bp CATTGCCATTGCTGGGCCGGTTGTGCTTCTTGGCTTTaGTTGAATCCACCAAACACCGGGGTTCAACCAGCC +
Preference number: 6 (lower is better)
Translates to: HCHCWAGCASWL*LNPPNTGVQPA
Trigger: GGCTGGTTGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CCA 72 bp ATCACTGGGCCCGGCTTCTTCTCATCTCCATCACTTTaGCTCTTTGAGTTCCTGACGTGGCCTGAGGAGGTC +
Preference number: 6 (lower is better)
Translates to: ITGPGFFSSPSL*LFEFLTWPEEV
Trigger: GACCTCCTCAGGCCACGTCAGGAACTCAAAGAGCCAAAGTGATGGAGATGAGAAGAAGCCGGGCCCAGTGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 72 bp CCATTGCCATTGCTGGGCCGGTTGTGCTTCTTGGCTTaGGTTGAATCCACCAAACACCGGGGTTCAACCAGC +
Preference number: 6 (lower is better)
Translates to: PLPLLGRLCFLA*VESTKHRGSTS
Trigger: GCTGGTTGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CAA 72 bp CCTGTGCCATTGCCATTGCTGGGCCGGTTGTGCTTCTaGGCTTTGGTTGAATCCACCAAACACCGGGGTTCA +
Preference number: 6 (lower is better)
Translates to: PVPLPLLGRLCF*ALVESTKHRGS
Trigger: TGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CAA 90 bp ATTTTGAGGCCTGTGCCATTGCCATTGCTGGGCCGGTTGTGCTTCTaGGCTTTGGTTGAATCCACCAAACACCGGGGTTCAACCAGCCAC +
Preference number: 6 (lower is better)
Translates to: ILRPVPLPLLGRLCF*ALVESTKHRGSTSH
Trigger: GTGGCTGGTTGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAGGCCTCAAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CAA 90 bp GAGGAGGTCATTTTGAGGCCTGTGCCATTGCCATTGCTGGGCCGGTaGTGCTTCTTGGCTTTGGTTGAATCCACCAAACACCGGGGTTCA +
Preference number: 6 (lower is better)
Translates to: EEVILRPVPLPLLGR*CFLALVESTKHRGS
Trigger: TGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAGGCCTCAAAATGACCTCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CAA 90 bp CTGACGTGGCCTGAGGAGGTCATTTTGAGGCCTGTGCCATTGCCATaGCTGGGCCGGTTGTGCTTCTTGGCTTTGGTTGAATCCACCAAA +
Preference number: 6 (lower is better)
Translates to: LTWPEEVILRPVPLP*LGRLCFLALVESTK
Trigger: TTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAGGCCTCAAAATGACCTCCTCAGGCCACGTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS GCA 72 bp CTGACACTGACCAGGCAGGAAGTGGATCTGCAGCACTaGGTTGTTCTCCTTGTGAAGGCCCATGAACTCTAC +
Preference number: 6 (lower is better)
Translates to: LTLTRQEVDLQH*VVLLVKAHELY
Trigger: GTAGAGTTCATGGGCCTTCACAAGGAGAACAACGCAGTGCTGCAGATCCACTTCCTGCCTGGTCAGTGTCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000103032.11
ENSMUST00000133250.8
ENSMUST00000137900.2
ENSMUST00000155878.8
ENSMUST00000172552.8
ENSMUST00000173289.8
ENSMUST00000177736.8
CDS GCA 72 bp GGCATACCGCCCTGGAAGATGGTGAAGGGCAACCCTTaGCTGGTGGTGAGCCAGAAGATTTTCGTTATAGCT +
Preference number: 6 (lower is better)
Translates to: GIPPWKMVKGNP*LVVSQKIFVIA
Trigger: AGCTATAACGAAAATCTTCTGGCTCACCACCAGGCAAGGGTTGCCCTTCACCATCTTCCAGGGCGGTATGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 72 bp ACCTTGAATTGCTCCTCCGACACCACAAGCAATTGGTaGCTCCCTTGCATGTCTGGGCTCTTCGACAGGTCA +
Preference number: 6 (lower is better)
Translates to: TLNCSSDTTSNW*LPCMSGLFDRS
Trigger: TGACCTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTCGGAGGAGCAATTCAAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 72 bp TTGAATCCACCAAACACCGGGGTTCAACCAGCCACTTaGTGGAGAGAGAAAAGCGCTCGAACTCCGAAGGTG +
Preference number: 6 (lower is better)
Translates to: LNPPNTGVQPAT*WREKSARTPKV
Trigger: CACCTTCGGAGTTCGAGCGCTTTTCTCTCTCCACCAAGTGGCTGGTTGAACCCCGGTGTTTGGTGGATTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CCA 72 bp CTGTGCCATTGCCATTGCTGGGCCGGTTGTGCTTCTTaGCTTTGGTTGAATCCACCAAACACCGGGGTTCAA +
Preference number: 6 (lower is better)
Translates to: LCHCHCWAGCAS*LWLNPPNTGVQ
Trigger: TTGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CCA 72 bp AGCCTTGATATTCACAGCCTGGGCCTGCGCTTGATCTaGATTCAGATCCTGAGGGAGAGCTGTATGGTCCTG +
Preference number: 6 (lower is better)
Translates to: SLDIHSLGLRLI*IQILRESCMVL
Trigger: CAGGACCATACAGCTCTCCCTCAGGATCTGAATCCAGATCAAGCGCAGGCCCAGGCTGTGAATATCAAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177736.8
CDS CAA 72 bp GTTGAATCCACCAAACACCGGGGTTCAACCAGCCACTaGGTGGAGAGAGAAAAGCGCTCGAACTCCGAAGGT +
Preference number: 6 (lower is better)
Translates to: VESTKHRGSTSH*VEREKRSNSEG
Trigger: ACCTTCGGAGTTCGAGCGCTTTTCTCTCTCCACCAAGTGGCTGGTTGAACCCCGGTGTTTGGTGGATTCAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CAA 72 bp CCTGAGGAGGTCATTTTGAGGCCTGTGCCATTGCCATaGCTGGGCCGGTTGTGCTTCTTGGCTTTGGTTGAA +
Preference number: 6 (lower is better)
Translates to: PEEVILRPVPLP*LGRLCFLALVE
Trigger: TTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAGGCCTCAAAATGACCTCCTCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CCA 72 bp AATACCTTGAATTGCTCCTCCGACACCACAAGCAATTaGTGGCTCCCTTGCATGTCTGGGCTCTTCGACAGG +
Preference number: 6 (lower is better)
Translates to: NTLNCSSDTTSN*WLPCMSGLFDR
Trigger: CCTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTCGGAGGAGCAATTCAAGGTATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CCA 72 bp AATCCACCAAACACCGGGGTTCAACCAGCCACTTGGTaGAGAGAGAAAAGCGCTCGAACTCCGAAGGTGATA +
Preference number: 6 (lower is better)
Translates to: NPPNTGVQPATW*REKSARTPKVI
Trigger: TATCACCTTCGGAGTTCGAGCGCTTTTCTCTCTCCACCAAGTGGCTGGTTGAACCCCGGTGTTTGGTGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CCA 72 bp CCATCTCCATCACTTTGGCTCTTTGAGTTCCTGACGTaGCCTGAGGAGGTCATTTTGAGGCCTGTGCCATTG +
Preference number: 6 (lower is better)
Translates to: PSPSLWLFEFLT*PEEVILRPVPL
Trigger: CAATGGCACAGGCCTCAAAATGACCTCCTCAGGCCACGTCAGGAACTCAAAGAGCCAAAGTGATGGAGATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128826.2
CDS CCA 72 bp CTCTGGATTTCCTTTAGGACCCCATCTCCATCACTTTaGCTCTTTGAGTTCCTGACGTGGCCTGAGGAGGTC +
Preference number: 6 (lower is better)
Translates to: LWISFRTPSPSL*LFEFLTWPEEV
Trigger: GACCTCCTCAGGCCACGTCAGGAACTCAAAGAGCCAAAGTGATGGAGATGGGGTCCTAAAGGAAATCCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128826.2
CDS CAA 72 bp GAATACCTTGAATTGCTCCTCCGACACCACAAGCAATaGGTGGCTCCCTTGCATGTCTGGGCTCTTCGACAG +
Preference number: 6 (lower is better)
Translates to: EYLELLLRHHKQ*VAPLHVWALRQ
Trigger: CTGTCGAAGAGCCCAGACATGCAAGGGAGCCACCAATTGCTTGTGGTGTCGGAGGAGCAATTCAAGGTATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000103032.11
ENSMUST00000177736.8
CDS CAA 90 bp TTGGCTTTGGTTGAATCCACCAAACACCGGGGTTCAACCAGCCACTaGGTGGAGAGAGAAAAGCGCTCGAACTCCGAAGGTGATATCAGA +
Preference number: 6 (lower is better)
Translates to: LALVESTKHRGSTSH*VEREKRSNSEGDIR
Trigger: TCTGATATCACCTTCGGAGTTCGAGCGCTTTTCTCTCTCCACCAAGTGGCTGGTTGAACCCCGGTGTTTGGTGGATTCAACCAAAGCCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS CAA 72 bp ATTTTGAGGCCTGTGCCATTGCCATTGCTGGGCCGGTaGTGCTTCTTGGCTTTGGTTGAATCCACCAAACAC +
Preference number: 6 (lower is better)
Translates to: ILRPVPLPLLGR*CFLALVESTKH
Trigger: GTGTTTGGTGGATTCAACCAAAGCCAAGAAGCACAACCGGCCCAGCAATGGCAATGGCACAGGCCTCAAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8
CDS TCA 72 bp CTTGGTGGAGAGAGAAAAGCGCTCGAACTCCGAAGGTaGTATCAGATAGAAACCTTGGCCATATTTGGTGAA +
Preference number: 6 (lower is better)
Translates to: LGGERKALELRR*YQIETLAIFGE
Trigger: TTCACCAAATATGGCCAAGGTTTCTATCTGATATCACCTTCGGAGTTCGAGCGCTTTTCTCTCTCCACCAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000103032.11
ENSMUST00000128826.2
ENSMUST00000177736.8