RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LLGL1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020536

Ensembl transcript IDs: ENSMUST00000052346.10, ENSMUST00000108719.4

Found 326 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACCCACAGGGTCAGAGGTGGCCTTCTAAATGCACAGGATTTCAGTaGTGCCAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCT +
Preference number: 1 (lower is better)
Translates to: HPQGQRWPSKCTGFQ*CQARPFHDCGSPMP
Trigger: AGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTGGCAGCACTGAAATCCTGTGCATTTAGAAGGCCACCTCTGACCCTGTGGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR GCA 90 bp AAGCATCAACTCCTACACCCACAGGGTCAGAGGTGGCCTTCTAAATaGACAGGATTTCAGTGCTGCCAGGCCAGGCCCTTTCATGACTGT +
Preference number: 1 (lower is better)
Translates to: KHQLLHPQGQRWPSK*TGFQCCQARPFHDC
Trigger: ACAGTCATGAAAGGGCCTGGCCTGGCAGCACTGAAATCCTGTGCATTTAGAAGGCCACCTCTGACCCTGTGGGTGTAGGAGTTGATGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR GCA 90 bp AGCACCTCATTTAATCAGAAGGGTGTAGGCCCGACAAGCATCATCTaGCTCCAGGTTCCGCAGGTTCTTCTCAGAGTCCTCAGGAGAGCT +
Preference number: 1 (lower is better)
Translates to: STSFNQKGVGPTSII*LQVPQVLLRVLRRA
Trigger: AGCTCTCCTGAGGACTCTGAGAAGAACCTGCGGAACCTGGAGGCAGATGATGCTTGTCGGGCCTACACCCTTCTGATTAAATGAGGTGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108719.4
3UTR-3UTR TCA 90 bp CCAGGTCATGCCTGCCTGCGGGGTAGGCAGCCCCTTTCAGTGATGGCCCAAGATGGGTTCCAGCTGGAGTaGGGGATGGCAGCTGCTGTG +
Preference number: 2 (lower is better)
Translates to: PGHACLRGRQPLSVMAQDGFQLE*GMAAAV
Trigger: CACAGCAGCTGCCATCCCTCACTCCAGCTGGAACCC...ATCTTGGGCCATCACTGAAAGGGGCTGCCTACCCCGCAGGCAGGCATGACCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR TCA 90 bp CGGCTGAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCTGGATCCCCTATGCCTaGCAGCCAGAGGAAGGCAGC +
Preference number: 2 (lower is better)
Translates to: RLSLRLGCVQGPASVSGSWIPYA*QPEEGS
Trigger: GCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCA...GGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGCCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR TCA 90 bp GGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACAGGGTTCCAGCTGGAGTaGGGGATGGCAGCTGCTGTG +
Preference number: 2 (lower is better)
Translates to: GKPILTAAHTRAHTRTHTGFQLE*GMAAAV
Trigger: CACAGCAGCTGCCATCCCTCACTCCAGCTGGAACCC...TGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp AGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTAAGGGGCGTGAGGGATGGCAGCTaGTGTGTGGTAAGGCCAGGC +
Preference number: 2 (lower is better)
Translates to: RLGCVQGPASVSGSVLRGVRDGS*CVVRPG
Trigger: GCCTGGCCTTACCACACAGCAGCTGCCATCCCTCAC...GCCCCTTAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR CCA 90 bp CGGCTGAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCAGTGATGGCCCAAGATaGGCTTGCTGGGGAGCTAGG +
Preference number: 2 (lower is better)
Translates to: RLSLRLGCVQGPASVSGSSDGPR*ACWGAR
Trigger: CCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACT...GGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR CAA 90 bp TACAGTATGGAGTGCAAAAGGATGCTCGCACCCCTCCGGCTGAGCTaGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCC +
Preference number: 2 (lower is better)
Translates to: YSMECKRMLAPLRLS*RLGCVQGPASVSGS
Trigger: GGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGCCGGAGGGGTGCGAGCATCCTTTTGCACTCCATACTGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp TGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGTGAGGGATGGCAGCTaGTGTGTGGTAAGGCCAGGC +
Preference number: 2 (lower is better)
Translates to: WHLQGSPSSLPHTHVHTHVRDGS*CVVRPG
Trigger: GCCTGGCCTTACCACACAGCAGCTGCCATCCCTCAC...GTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR CCA 90 bp GCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACACCTCTCCAAGATGGGCTTGCTaGGGAGCTAGGAGGGTACCA +
Preference number: 2 (lower is better)
Translates to: AHPHCRTHTCTHTHTHTSPRWAC*GARRVP
Trigger: TGGTACCCTCCTAGCTCCCCAGCAAGCCCATCTTGG...AGAGGTGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR TCA 90 bp CCAGGTCATGCCTGCCTGCGGGGTAGGCAGCCCCTTTCAGTGATGGCCCAAGATTCAGTGACTCTCCTGTaGAATGGGCTCTGTGGACTG +
Preference number: 2 (lower is better)
Translates to: PGHACLRGRQPLSVMAQDSVTLL*NGLCGL
Trigger: CAGTCCACAGAGCCCATTTCACAGGAGAGTCACTGA...ATCTTGGGCCATCACTGAAAGGGGCTGCCTACCCCGCAGGCAGGCATGACCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR TCA 90 bp AGGCAGCCCCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGACCTATCAGCCTCAGTaGCTCTCCTGTGAAATGGGC +
Preference number: 2 (lower is better)
Translates to: RQPLSVMAQDGLAGELGGTYQPQ*LSCEMG
Trigger: GCCCATTTCACAGGAGAGTCACTGAGGCTGATAGGT...CCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGGGGCTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp GGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACATGCACAGGATTTCAGTaGTGCCAGGCCAGGCCCTTT +
Preference number: 2 (lower is better)
Translates to: GKPILTAAHTRAHTRTHTCTGFQ*CQARPF
Trigger: AAAGGGCCTGGCCTGGCAGCACTGAAATCCTGTGCA...TGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp AGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGAAGAAGACCCCTAGTTaGCCTGGGGATGGCGGCTTG +
Preference number: 2 (lower is better)
Translates to: RPGPFMTVDPLCLTARGRKKTPS*PGDGGL
Trigger: CAAGCCGCCATCCCCAGGGCAACTAGGGGTCTTCTT...CCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000108719.4
3UTR-3UTR CCA 90 bp CATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACCAAGATGGGCTTGCTaGGGAGCTAGGAGGGTACCA +
Preference number: 2 (lower is better)
Translates to: HLQGSPSSLPHTHVHTHAPRWAC*GARRVP
Trigger: TGGTACCCTCCTAGCTCCCCAGCAAGCCCATCTTGG...TGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR CCA 90 bp CATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCAAGTGATGGCCCAAGATaGGCTTGCTGGGGAGCTAGG +
Preference number: 2 (lower is better)
Translates to: HLQGSPSSLPHTHVHTHASDGPR*ACWGAR
Trigger: CCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACT...TGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR TCA 90 bp GCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACACCTCTACCTATCAGCCTCAGTaGCTCTCCTGTGAAATGGGC +
Preference number: 2 (lower is better)
Translates to: AHPHCRTHTCTHTHTHTSTYQPQ*LSCEMG
Trigger: GCCCATTTCACAGGAGAGTCACTGAGGCTGATAGGT...AGAGGTGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp CATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCAGTGGTAAGGCCAGGCTaGCCCACAGCACCTCATTTA +
Preference number: 2 (lower is better)
Translates to: HLQGSPSSLPHTHVHTHAVVRPG*PTAPHL
Trigger: TAAATGAGGTGCTGTGGGGCAGCCTGGCCTTACCAC...TGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp AGCCGAAGGTGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACATAAGGTCCATGTaGTGGCTCAATAGGCAGGAC +
Preference number: 2 (lower is better)
Translates to: SRRWHLQGSPSSLPHTHVHIRSM*WLNRQD
Trigger: GTCCTGCCTATTGAGCCAGCACATGGACCTTATGTG...CACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCACCTTCGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp GCCCAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTGAAGCCCATCCTCACTaGCGCACACACACGTGCACA +
Preference number: 2 (lower is better)
Translates to: AQQSLVTGAHNTHRPGASEAHPH*RTHTCT
Trigger: TGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTC...ACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR TCA 90 bp GCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCAGTCCAGGGGCCAGGCCCTTTCATaGCTGTGGATCCCCTATGCC +
Preference number: 2 (lower is better)
Translates to: ARSKYQNCFRNDWPAQSRGQALS*LWIPYA
Trigger: GGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCC...CCTGGACTGAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp AATGACACCATTAGAGAAGCCTGCAGGGTTCCAGCTGGAGTGAGGGATGGCAGCTGCACAGGATTTCAGTaGTGCCAGGCCAGGCCCTTT +
Preference number: 2 (lower is better)
Translates to: NDTIREACRVPAGVRDGSCTGFQ*CQARPF
Trigger: AAAGGGCCTGGCCTGGCAGCACTGAAATCCTGTGCA...GCTGCCATCCCTCACTCCAGCTGGAACCCTGCAGGCTTCTCTAATGGTGTCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR CCA 90 bp GGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACAATAAGGTCCATGTGCTaGCTCAATAGGCAGGACCTA +
Preference number: 2 (lower is better)
Translates to: GKPILTAAHTRAHTRTHTIRSMC*LNRQDL
Trigger: TAGGTCCTGCCTATTGAGCCAGCACATGGACCTTAT...TGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR TCA 90 bp ACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCTGGATCCCCTATGCCTaGCAGCCAGAGGAAGGCAGC +
Preference number: 2 (lower is better)
Translates to: THRPGASTKTALEMTGQLWIPYA*QPEEGS
Trigger: GCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCA...GAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR CCA 90 bp CAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGAGTAATCAGAAGGGCTaGGGTAAGAAGACCCCTAGT +
Preference number: 2 (lower is better)
Translates to: QARPFHDCGSPMPDSQRKSNQKG*GKKTPS
Trigger: ACTAGGGGTCTTCTTACCCCAGCCCTTCTGATTACT...CTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp GCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCAGTCCAGGACTGTGGATCCCCTATaGCTGACAGCCAGAGGAAGG +
Preference number: 2 (lower is better)
Translates to: ARSKYQNCFRNDWPAQSRTVDPL*LTARGR
Trigger: CCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGT...CCTGGACTGAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp AAGCCGAAGGTGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTAGCAAGTACCAAAACTaGTTTAGAAATGACTGGCCA +
Preference number: 2 (lower is better)
Translates to: KPKVASTGKPILTAAHTRSKYQN*FRNDWP
Trigger: TGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCT...ACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCACCTTCGGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR CCA 90 bp CAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTACCATAAGGTCCATGTGCTaGCTCAATAGGCAGGACCTA +
Preference number: 2 (lower is better)
Translates to: QQSLVTGAHNTHRPGASTIRSMC*LNRQDL
Trigger: TAGGTCCTGCCTATTGAGCCAGCACATGGACCTTAT...GGTACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp TACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCACATAAGGTCCATGTaGTGGCTCAATAGGCAGGAC +
Preference number: 2 (lower is better)
Translates to: YTQARSKYQNCFRNDWPAHIRSM*WLNRQD
Trigger: GTCCTGCCTATTGAGCCAGCACATGGACCTTATGTG...AGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR CCA 90 bp ACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCATGGGCTCTGTGGACTaGATAAGCATCAACTCCTAC +
Preference number: 2 (lower is better)
Translates to: THRPGASTKTALEMTGQLMGSVD*ISINSY
Trigger: GTAGGAGTTGATGCTTATCCAGTCCACAGAGCCCAT...GAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR CAA 90 bp GAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAAATACTCTGCTaGAGGAGAAAGGAAGTACAGTATGGAGTGCAAAAGGATGCTCGC +
Preference number: 2 (lower is better)
Translates to: EMTGQLSPGVRKILC*RRKEVQYGVQKDAR
Trigger: GCGAGCATCCTTTTGCACTCCATACTGTACTTCCTTTCTCCTCAAGCAGAGTATTTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR CCA 90 bp ACACAATACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGTGCTTTAGAAATGACTaGCCAGCTCAGTCCAGGCGT +
Preference number: 2 (lower is better)
Translates to: TQYTQARSKYQNCFRNDWCFRND*PAQSRR
Trigger: ACGCCTGGACTGAGCTGGCCAGTCATTTCTAAAGCA...CCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp AGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAAAGGTGGCCTTCTAAATaGACAGGATTTCAGTGCTGC +
Preference number: 2 (lower is better)
Translates to: STKTALEMTGQLSPGVRKRWPSK*TGFQCC
Trigger: GCAGCACTGAAATCCTGTGCATTTAGAAGGCCACCT...TTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR CCA 90 bp ACACAATACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGAAAGGAAGTACAGTATaGAGTGCAAAAGGATGCTCG +
Preference number: 2 (lower is better)
Translates to: TQYTQARSKYQNCFRNDWKGSTV*SAKGCS
Trigger: CGAGCATCCTTTTGCACTCCATACTGTACTTCCTTT...CCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp ACACAATACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGAGCAAGTACCAAAACTaGTTTAGAAATGACTGGCCA +
Preference number: 2 (lower is better)
Translates to: TQYTQARSKYQNCFRNDWSKYQN*FRNDWP
Trigger: TGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCT...CCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATTGTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR-3UTR GCA 90 bp ACACAATACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGGTTAGAAAAATACTCTaGTTGAGGAGAAAGGAAGTA +
Preference number: 2 (lower is better)
Translates to: TQYTQARSKYQNCFRNDWVRKIL*LRRKEV
Trigger: TACTTCCTTTCTCCTCAAGCAGAGTATTTTTCTAAC...CCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATTGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR GCA 72 bp GCCTGCAGGGTTCCAGCTGGAGTGAGGGATGGCAGCTaGTGTGTGGTAAGGCCAGGCTGCCCCACAGCACCT +
Preference number: 3 (lower is better)
Translates to: ACRVPAGVRDGS*CVVRPGCPTAP
Trigger: AGGTGCTGTGGGGCAGCCTGGCCTTACCACACAGCAGCTGCCATCCCTCACTCCAGCTGGAACCCTGCAGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108719.4
3UTR-3UTR CAA 90 bp CATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACCCCTCCGGCTGAGCTaGAGGCTGGGATGTGTTCAG +
Preference number: 3 (lower is better)
Translates to: HLQGSPSSLPHTHVHTHAPLRLS*RLGCVQ
Trigger: CTGAACACATCCCAGCCTCAAGCTCAGCCGGAGGGG...TGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR GCA 72 bp GCCAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATaGCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGAG +
Preference number: 3 (lower is better)
Translates to: ARPGPFMTVDPL*LTARGRQLGFE
Trigger: CTCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR TCA 72 bp GTCCGTGTTAAGGGGCAAGGCAAGACCGACAGATGGTaGCGACTAAGGGGAGCAAACCCAGGTCATGCCTGC +
Preference number: 3 (lower is better)
Translates to: VRVKGQGKTDRW*RLRGANPGHAC
Trigger: GCAGGCATGACCTGGGTTTGCTCCCCTTAGTCGTCACCATCTGTCGGTCTTGCCTTGCCCCTTAACACGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR GCA 72 bp CTCCTACACCCACAGGGTCAGAGGTGGCCTTCTAAATaGACAGGATTTCAGTGCTGCCAGGCCAGGCCCTTT +
Preference number: 3 (lower is better)
Translates to: LLHPQGQRWPSK*TGFQCCQARPF
Trigger: AAAGGGCCTGGCCTGGCAGCACTGAAATCCTGTGCATTTAGAAGGCCACCTCTGACCCTGTGGGTGTAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR GCA 72 bp CAGAGGTGGCCTTCTAAATGCACAGGATTTCAGTGCTaGCAGGCCAGGCCCTTTCATGACTGTGGATCCCCT +
Preference number: 3 (lower is better)
Translates to: QRWPSKCTGFQC*QARPFHDCGSP
Trigger: AGGGGATCCACAGTCATGAAAGGGCCTGGCCTGGCAGCACTGAAATCCTGTGCATTTAGAAGGCCACCTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR GCA 72 bp TTTAATCAGAAGGGTGTAGGCCCGACAAGCATCATCTaGCTCCAGGTTCCGCAGGTTCTTCTCAGAGTCCTC +
Preference number: 3 (lower is better)
Translates to: FNQKGVGPTSII*LQVPQVLLRVL
Trigger: GAGGACTCTGAGAAGAACCTGCGGAACCTGGAGGCAGATGATGCTTGTCGGGCCTACACCCTTCTGATTAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108719.4
3UTR CCA 72 bp GATAAGCATCAACTCCTACACCCACAGGGTCAGAGGTaGCCTTCTAAATGCACAGGATTTCAGTGCTGCCAG +
Preference number: 3 (lower is better)
Translates to: DKHQLLHPQGQR*PSKCTGFQCCQ
Trigger: CTGGCAGCACTGAAATCCTGTGCATTTAGAAGGCCACCTCTGACCCTGTGGGTGTAGGAGTTGATGCTTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR GCA 72 bp ACACAATACACACAGGCCAGGAGCAAGTACCAAAACTaGTTTAGAAATGACTGGCCAGCTCAGTCCAGGCGT +
Preference number: 3 (lower is better)
Translates to: TQYTQARSKYQN*FRNDWPAQSRR
Trigger: ACGCCTGGACTGAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR TCA 72 bp GCCAGCTCAGTCCAGGCGTTAGAAAAATACTCTGCTTaGGGAGAAAGGAAGTACAGTATGGAGTGCAAAAGG +
Preference number: 3 (lower is better)
Translates to: ASSVQALEKYSA*GERKYSMECKR
Trigger: CCTTTTGCACTCCATACTGTACTTCCTTTCTCCTCAAGCAGAGTATTTTTCTAACGCCTGGACTGAGCTGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
3UTR GCA 72 bp ACTGGCCAGCTCAGTCCAGGCGTTAGAAAAATACTCTaGTTGAGGAGAAAGGAAGTACAGTATGGAGTGCAA +
Preference number: 3 (lower is better)
Translates to: TGQLSPGVRKIL*LRRKEVQYGVQ
Trigger: TTGCACTCCATACTGTACTTCCTTTCTCCTCAAGCAGAGTATTTTTCTAACGCCTGGACTGAGCTGGCCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GCTGAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTTGCCCGCCCACATGGTaGGCCCGTGGTGGGTCGCAT +
Preference number: 4 (lower is better)
Translates to: AELEAGMCSGPSISQRVRCPPTW*ARGGSH
Trigger: ATGCGACCCACCACGGGCCCACCATGTGGGCGGGCA...ACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACATGGTGCCCGCCCACATaGTGGGCCCGTGGTGGGTCG +
Preference number: 4 (lower is better)
Translates to: GKPILTAAHTRAHTRTHTWCPPT*WARGGS
Trigger: CGACCCACCACGGGCCCACCATGTGGGCGGGCACCA...TGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACACCTCTGCCGCCTTGCATGTCTaGCGCCTGGGCCAGGTCCCG +
Preference number: 4 (lower is better)
Translates to: AHPHCRTHTCTHTHTHTSAALHV*RLGQVP
Trigger: CGGGACCTGGCCCAGGCGCCAGACATGCAAGGCGGC...AGAGGTGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp CCAGGTCATGCCTGCCTGCGGGGTAGGCAGCCCCTTTCAGTGATGGCCCAAGATGGGTTCAGCCGCTCGTaGCCCTTCCACGTGAAGCCC +
Preference number: 4 (lower is better)
Translates to: PGHACLRGRQPLSVMAQDGFSRS*PFHVKP
Trigger: GGGCTTCACGTGGAAGGGTCACGAGCGGCTGAACCC...ATCTTGGGCCATCACTGAAAGGGGCTGCCTACCCCGCAGGCAGGCATGACCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GCTGCCAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGATTAAGCTTCTCGCGCTaGGGGTCGGCGCCCTGCCGC +
Preference number: 4 (lower is better)
Translates to: AARPGPFMTVDPLCLTARLSFSR*GSAPCR
Trigger: GCGGCAGGGCGCCGACCCGCAGCGCGAGAAGCTTAA...TCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTGGCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GCTGAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTCAGCAGCCCCGTGTGTaGGTTCAGCCGCTCGTGACC +
Preference number: 4 (lower is better)
Translates to: AELEAGMCSGPSISQRVRQQPRV*VQPLVT
Trigger: GGTCACGAGCGGCTGAACCCACACACGGGGCTGCTG...ACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGTGCGGGTCGGCGCCCTaGCGCCGGAACCGAAACTTC +
Preference number: 4 (lower is better)
Translates to: RPGPFMTVDPLCLTARGRCGSAP*RRNRNF
Trigger: GAAGTTTCGGTTCCGGCGGCAGGGCGCCGACCCGCA...CCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GCTGAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTCTGCCCCTCCAGCAGTaGCAGGGTGGCTACATCCAG +
Preference number: 4 (lower is better)
Translates to: AELEAGMCSGPSISQRVRLPLQQ*QGGYIQ
Trigger: CTGGATGTAGCCACCCTGGCACTGCTGGAGGGGCAG...ACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AGGCAGCCCCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGGCACCTGGCCTGCAGTaGCAGCTACCACCATCTGGG +
Preference number: 4 (lower is better)
Translates to: RQPLSVMAQDGLAGELGGAPGLQ*QLPPSG
Trigger: CCCAGATGGTGGTAGCTGGCACTGCAGGCCAGGTGC...CCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGGGGCTGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGCAGAGCCCGAGTTGGTaGCCGCCCACATGGTGGGCC +
Preference number: 4 (lower is better)
Translates to: QARPFHDCGSPMPDSQRKQSPSW*PPTWWA
Trigger: GGCCCACCATGTGGGCGGGCACCAACTCGGGCTCTG...CTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CGGCTGAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCTTAGCTGCACCTCCTTaGCCAGCACCGCCTCCACTG +
Preference number: 4 (lower is better)
Translates to: RLSLRLGCVQGPASVSGSLAAPP*PAPPPL
Trigger: CAGTGGAGGCGGTGCTGGGCAAGGAGGTGCAGCTAA...GGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTATGCCCGCCCACATGGTaGGCCCGTGGTGGGTCGCAT +
Preference number: 4 (lower is better)
Translates to: SLRLGCVQGPASVSGSVLCPPTW*ARGGSH
Trigger: ATGCGACCCACCACGGGCCCACCATGTGGGCGGGCA...TAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GCTGAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTACACAGAGCCCGAGTTaGTGCCCGCCCACATGGTGG +
Preference number: 4 (lower is better)
Translates to: AELEAGMCSGPSISQRVRTQSPS*CPPTWW
Trigger: CCACCATGTGGGCGGGCACCAACTCGGGCTCTGTGT...ACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGTGCATGTCTGGCGCCTaGGCCAGGTCCCGGGAAGCC +
Preference number: 4 (lower is better)
Translates to: QARPFHDCGSPMPDSQRKCMSGA*ARSREA
Trigger: GGCTTCCCGGGACCTGGCCCAGGCGCCAGACATGCA...CTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp CCAGGTCATGCCTGCCTGCGGGGTAGGCAGCCCCTTTCAGTGATGGCCCAAGATGAACCACATCTGGGCTaGGAGTCTGCCCCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: PGHACLRGRQPLSVMAQDEPHLG*ESAPPA
Trigger: TGCTGGAGGGGCAGACTCTCAGCCCAGATGTGGTTC...ATCTTGGGCCATCACTGAAAGGGGCTGCCTACCCCGCAGGCAGGCATGACCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp GGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACACTGCTGGGACCTCACTaGGCTCCAGCACCAGCACCT +
Preference number: 4 (lower is better)
Translates to: GKPILTAAHTRAHTRTHTLLGPH*APAPAP
Trigger: AGGTGCTGGTGCTGGAGCTCAGTGAGGTCCCAGCAG...TGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp AGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTAGGGTTCAGCCGCTCGTaGCCCTTCCACGTGAAGCCC +
Preference number: 4 (lower is better)
Translates to: SLRLGCVQGPASVSGSVLGFSRS*PFHVKP
Trigger: GGGCTTCACGTGGAAGGGTCACGAGCGGCTGAACCC...TAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp AGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTAAGGGGCCATCACCCAGGTTGGTaGGGCAGGCAAGGCAGGTCT +
Preference number: 4 (lower is better)
Translates to: RLGCVQGPASVSGSVLRGHHPGW*GRQGRS
Trigger: AGACCTGCCTTGCCTGCCTCACCAACCTGGGTGATG...GCCCCTTAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp ACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGAGGAATGCGGGTCGGCGCCCTaGCGCCGGAACCGAAACTTC +
Preference number: 4 (lower is better)
Translates to: TVDPLCLTARGRQLGFEECGSAP*RRNRNF
Trigger: GAAGTTTCGGTTCCGGCGGCAGGGCGCCGACCCGCA...TTCCTCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AGGCAGCCCCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGCACCAGCACCTGGCCTaGAGTGCCAGCTACCACCAT +
Preference number: 4 (lower is better)
Translates to: RQPLSVMAQDGLAGELGGHQHLA*SASYHH
Trigger: ATGGTGGTAGCTGGCACTGCAGGCCAGGTGCTGGTG...CCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGGGGCTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GCTGCCAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGATCGTGTGGGCAGGTCTaGTCGGCCAGCTGGGCATTG +
Preference number: 4 (lower is better)
Translates to: AARPGPFMTVDPLCLTARSCGQV*SASWAL
Trigger: CAATGCCCAGCTGGCCGAGCAGACCTGCCCACACGA...TCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTGGCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AGCCGAAGGTGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGTCGTGTGGGCAGGTCTaGTCGGCCAGCTGGGCATTG +
Preference number: 4 (lower is better)
Translates to: SRRWHLQGSPSSLPHTHVSCGQV*SASWAL
Trigger: CAATGCCCAGCTGGCCGAGCAGACCTGCCCACACGA...CACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCACCTTCGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTGGCTCAATGCGGCGCTaGACGGGTGTCATCTCCAGG +
Preference number: 4 (lower is better)
Translates to: ELEAGMCSGPSISQRVRVGSMRR*TGVISR
Trigger: CCTGGAGATGACACCCGTGCAGCGCCGCATTGAGCC...AACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CCAGGTCATGCCTGCCTGCGGGGTAGGCAGCCCCTTTCAGTGATGGCCCAAGATTCCGCCTGCTGTGGCTaGTGGAACCTCCAGCGCATA +
Preference number: 4 (lower is better)
Translates to: PGHACLRGRQPLSVMAQDSACCG*WNLQRI
Trigger: TATGCGCTGGAGGTTCCAGCAGCCACAGCAGGCGGA...ATCTTGGGCCATCACTGAAAGGGGCTGCCTACCCCGCAGGCAGGCATGACCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CGGCTGAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCTCATCCTCCACAGCCTaGGCCAGGCTGTCAGCATGT +
Preference number: 4 (lower is better)
Translates to: RLSLRLGCVQGPASVSGSSSSTA*ARLSAC
Trigger: ACATGCTGACAGCCTGGCCCAGGCTGTGGAGGATGA...GGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GCCCAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTTGGTGCCCGCCCACATaGTGGGCCCGTGGTGGGTCG +
Preference number: 4 (lower is better)
Translates to: AQQSLVTGAHNTHRPGASWCPPT*WARGGS
Trigger: CGACCCACCACGGGCCCACCATGTGGGCGGGCACCA...ACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp AAGCCGAAGGTGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTCAGATGTCCCTGGAGTaGCTCCACAGGGCCCAAGGC +
Preference number: 4 (lower is better)
Translates to: KPKVASTGKPILTAAHTRQMSLE*LHRAQG
Trigger: GCCTTGGGCCCTGTGGAGTCACTCCAGGGACATCTG...ACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCACCTTCGGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp CATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACTGCTGGGACCTCACTaGGCTCCAGCACCAGCACCT +
Preference number: 4 (lower is better)
Translates to: HLQGSPSSLPHTHVHTHALLGPH*APAPAP
Trigger: AGGTGCTGGTGCTGGAGCTCAGTGAGGTCCCAGCAG...TGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GCTGAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGCAGGCTGTGGGCTCTaGTGCTCACCAGCACTTACA +
Preference number: 4 (lower is better)
Translates to: AELEAGMCSGPSISQRVRAGCGL*CSPALT
Trigger: TGTAAGTGCTGGTGAGCAGCAGAGCCCACAGCCTGC...ACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGAAGCAGCAGCCCACGCTaGGAGGGTTCCTGGGCCAAG +
Preference number: 4 (lower is better)
Translates to: HDCGSPMPDSQRKAARLRSSSPR*EGSWAK
Trigger: CTTGGCCCAGGAACCCTCGCAGCGTGGGCTGCTGCT...TCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp ACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGAGGAAAGCAGCAGCCCACGCTaGGAGGGTTCCTGGGCCAAG +
Preference number: 4 (lower is better)
Translates to: TVDPLCLTARGRQLGFEESSSPR*EGSWAK
Trigger: CTTGGCCCAGGAACCCTCGCAGCGTGGGCTGCTGCT...TTCCTCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGGCTCAATGCGGCGCTaGACGGGTGTCATCTCCAGG +
Preference number: 4 (lower is better)
Translates to: QARPFHDCGSPMPDSQRKGSMRR*TGVISR
Trigger: CCTGGAGATGACACCCGTGCAGCGCCGCATTGAGCC...CTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AAGCCGAAGGTGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTTCCAGCACCAGCACCTaGCCTGCAGTGCCAGCTACC +
Preference number: 4 (lower is better)
Translates to: KPKVASTGKPILTAAHTRSSTST*PAVPAT
Trigger: GGTAGCTGGCACTGCAGGCCAGGTGCTGGTGCTGGA...ACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCACCTTCGGCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCAACACAGAGCCCGAGTTaGTGCCCGCCCACATGGTGG +
Preference number: 4 (lower is better)
Translates to: HLQGSPSSLPHTHVHTHATQSPS*CPPTWW
Trigger: CCACCATGTGGGCGGGCACCAACTCGGGCTCTGTGT...TGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AATGACACCATTAGAGAAGCCTGCAGGGTTCCAGCTGGAGTGAGGGATGGCAGCTGCATGTCTGGCGCCTaGGCCAGGTCCCGGGAAGCC +
Preference number: 4 (lower is better)
Translates to: NDTIREACRVPAGVRDGSCMSGA*ARSREA
Trigger: GGCTTCCCGGGACCTGGCCCAGGCGCCAGACATGCA...GCTGCCATCCCTCACTCCAGCTGGAACCCTGCAGGCTTCTCTAATGGTGTCATT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp CCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGTGGTGCCGATGGCCATaGTGCGGAGCTCAGGATCGA +
Preference number: 4 (lower is better)
Translates to: PGPFMTVDPLCLTARGRQWCRWP*CGAQDR
Trigger: TCGATCCTGAGCTCCGCATCATGGCCATCGGCACCA...CTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp CCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGGAACCACATCTGGGCTaGGAGTCTGCCCCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: PGPFMTVDPLCLTARGRQEPHLG*ESAPPA
Trigger: TGCTGGAGGGGCAGACTCTCAGCCCAGATGTGGTTC...CTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp AGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTAAGGGGCCCCGACTGTAGCCTATaGGGATCTTGCTGGGGTCTT +
Preference number: 4 (lower is better)
Translates to: RLGCVQGPASVSGSVLRGPDCSL*GSCWGL
Trigger: AAGACCCCAGCAAGATCCTCATAGGCTACAGTCGGG...GCCCCTTAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGACTGCCCCTCCAGCAGTaGCAGGGTGGCTACATCCAG +
Preference number: 4 (lower is better)
Translates to: HDCGSPMPDSQRKAARLRLPLQQ*QGGYIQ
Trigger: CTGGATGTAGCCACCCTGGCACTGCTGGAGGGGCAG...TCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTAAGGGGCGGCTGTGGGCTCTGCTaGTCACCAGCACTTACAATG +
Preference number: 4 (lower is better)
Translates to: RLGCVQGPASVSGSVLRGGCGLC*SPALTM
Trigger: CATTGTAAGTGCTGGTGAGCAGCAGAGCCCACAGCC...GCCCCTTAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACACCTCTGCAGGCTGTGGGCTCTaGTGCTCACCAGCACTTACA +
Preference number: 4 (lower is better)
Translates to: AHPHCRTHTCTHTHTHTSAGCGL*CSPALT
Trigger: TGTAAGTGCTGGTGAGCAGCAGAGCCCACAGCCTGC...AGAGGTGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CCAGGTCATGCCTGCCTGCGGGGTAGGCAGCCCCTTTCAGTGATGGCCCAAGATCCAGCACAGGGCTCTTaGGCTGGTAGTCAAAAAGGC +
Preference number: 4 (lower is better)
Translates to: PGHACLRGRQPLSVMAQDPAQGS*AGSQKG
Trigger: GCCTTTTTGACTACCAGCGCAAGAGCCCTGTGCTGG...ATCTTGGGCCATCACTGAAAGGGGCTGCCTACCCCGCAGGCAGGCATGACCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGTACCAAGTCAGACCGAGGCTCAATaGGGCGCTGCACGGGTGTCA +
Preference number: 4 (lower is better)
Translates to: PFSDGPRWACWGARRVPSQTEAQ*GAARVS
Trigger: TGACACCCGTGCAGCGCCGCATTGAGCCTCGGTCTG...ACTTGGTACCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTATCCGCCTGCTGTGGCTaGTGGAACCTCCAGCGCATA +
Preference number: 4 (lower is better)
Translates to: SLRLGCVQGPASVSGSVLSACCG*WNLQRI
Trigger: TATGCGCTGGAGGTTCCAGCAGCCACAGCAGGCGGA...TAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp ACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGAGGAACCGCTTCTCTCCGCCTaGTGTGGCTGCTGGAACCTC +
Preference number: 4 (lower is better)
Translates to: TVDPLCLTARGRQLGFEEPLLSA*CGCWNL
Trigger: GAGGTTCCAGCAGCCACAGCAGGCGGAGAGAAGCGG...TTCCTCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GCTGCCAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGATCTTGCAGATGTCCCTaGAGTGACTCCACAGGGCCC +
Preference number: 4 (lower is better)
Translates to: AARPGPFMTVDPLCLTARSCRCP*SDSTGP
Trigger: GGGCCCTGTGGAGTCACTCCAGGGACATCTGCAAGA...TCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTGGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CCGACAAGCATCATCTGCCTCCAGGTTCCGCAGGTTCTTCTCAGAGTCCTCAGGAGTGGGCTGCAGCGTTaGGGGGCTGCCAGTGTCTGT +
Preference number: 4 (lower is better)
Translates to: PTSIICLQVPQVLLRVLRSGLQR*GAASVC
Trigger: ACAGACACTGGCAGCCCCCCAACGCTGCAGCCCACT...CCTGAGGACTCTGAGAAGAACCTGCGGAACCTGGAGGCAGATGATGCTTGTCGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGGGGCCCACAGCTTGCTaGGGACATTGGCAACATGGG +
Preference number: 4 (lower is better)
Translates to: RPGPFMTVDPLCLTARGRGPTAC*GHWQHG
Trigger: CCCATGTTGCCAATGTCCCCAGCAAGCTGTGGGCCC...CCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCAGCCAACTCAAGGCACTaGAGGCAGGCTGTGGGCTCT +
Preference number: 4 (lower is better)
Translates to: HLQGSPSSLPHTHVHTHAANSRH*RQAVGS
Trigger: AGAGCCCACAGCCTGCCTCCAGTGCCTTGAGTTGGC...TGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CGGCTGAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCACAGTGGCCCCTCCATaGCCAAAGAATCATTGGGGT +
Preference number: 4 (lower is better)
Translates to: RLSLRLGCVQGPASVSGSTVAPP*PKNHWG
Trigger: ACCCCAATGATTCTTTGGCCATGGAGGGGCCACTGT...GGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CCAGGTCATGCCTGCCTGCGGGGTAGGCAGCCCCTTTCAGTGATGGCCCAAGATCTGGTCCCATTAGCCTaGCTCAGCTTGGGTGACTCT +
Preference number: 4 (lower is better)
Translates to: PGHACLRGRQPLSVMAQDLVPLA*LSLGDS
Trigger: AGAGTCACCCAAGCTGAGCCAGGCTAATGGGACCAG...ATCTTGGGCCATCACTGAAAGGGGCTGCCTACCCCGCAGGCAGGCATGACCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AGGCAGCCCCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGCCCAGAGATGCAAGCTaGTGTCATCTAGCAGGGTCA +
Preference number: 4 (lower is better)
Translates to: RQPLSVMAQDGLAGELGGPRDAS*CHLAGS
Trigger: TGACCCTGCTAGATGACAGCAGCTTGCATCTCTGGG...CCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGGGGCTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTAAGGGGCCCCAGAGATGCAAGCTaGTGTCATCTAGCAGGGTCA +
Preference number: 4 (lower is better)
Translates to: RLGCVQGPASVSGSVLRGPRDAS*CHLAGS
Trigger: TGACCCTGCTAGATGACAGCAGCTTGCATCTCTGGG...GCCCCTTAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTATGCGGGCCCACAGCTTaGTGGGGACATTGGCAACAT +
Preference number: 4 (lower is better)
Translates to: SLRLGCVQGPASVSGSVLCGPTA*WGHWQH
Trigger: ATGTTGCCAATGTCCCCAGCAAGCTGTGGGCCCGCA...TAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp TGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACTGCGGGCCCACAGCTTaGTGGGGACATTGGCAACAT +
Preference number: 4 (lower is better)
Translates to: WHLQGSPSSLPHTHVHTHCGPTA*WGHWQH
Trigger: ATGTTGCCAATGTCCCCAGCAAGCTGTGGGCCCGCA...GTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGCACCAGCACTTACAATaGGGGCCCACAGCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: QARPFHDCGSPMPDSQRKHQHLQ*GPTACW
Trigger: CCAGCAAGCTGTGGGCCCGCATTGTAAGTGCTGGTG...CTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACCAGCACTTACAATaGGGGCCCACAGCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: HLQGSPSSLPHTHVHTHAHQHLQ*GPTACW
Trigger: CCAGCAAGCTGTGGGCCCGCATTGTAAGTGCTGGTG...TGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GCCCAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTGCACCTGGCCTGCAGTaGCAGCTACCACCATCTGGG +
Preference number: 4 (lower is better)
Translates to: AQQSLVTGAHNTHRPGASAPGLQ*QLPPSG
Trigger: CCCAGATGGTGGTAGCTGGCACTGCAGGCCAGGTGC...ACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTGGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGTACCAAGTCACCAGCACCTGGCCTaGAGTGCCAGCTACCACCAT +
Preference number: 4 (lower is better)
Translates to: PFSDGPRWACWGARRVPSHQHLA*SASYHH
Trigger: ATGGTGGTAGCTGGCACTGCAGGCCAGGTGCTGGTG...ACTTGGTACCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AAGCCGAAGGTGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGGCTGCCAGTGTCTGTaGACCAGATGGCATAGCTGC +
Preference number: 4 (lower is better)
Translates to: KPKVASTGKPILTAAHTRGCQCL*TRWHSC
Trigger: GCAGCTATGCCATCTGGTCCACAGACACTGGCAGCC...ACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCACCTTCGGCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGGGCTGCCAGTGTCTGTaGACCAGATGGCATAGCTGC +
Preference number: 4 (lower is better)
Translates to: RPGPFMTVDPLCLTARGRGCQCL*TRWHSC
Trigger: GCAGCTATGCCATCTGGTCCACAGACACTGGCAGCC...CCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTGTCACACTCATCCTCTaGCTGTGTGCTGTGCACCGT +
Preference number: 4 (lower is better)
Translates to: ELEAGMCSGPSISQRVRVVTLIL*LCAVHR
Trigger: ACGGTGCACAGCACACAGCCAGAGGATGAGTGTGAC...AACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCAAGCACGGCTAAGGCCTaGGGGTTGTCACACTCATCC +
Preference number: 4 (lower is better)
Translates to: HLQGSPSSLPHTHVHTHASTAKA*GLSHSS
Trigger: GGATGAGTGTGACAACCCCCAGGCCTTAGCCGTGCT...TGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp TGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCTTGCTGGGGACATTaGCAACATGGGCAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: WHLQGSPSSLPHTHVHTHACWGH*QHGQSR
Trigger: CCTGCTCTGCCCATGTTGCCAATGTCCCCAGCAAGC...GTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp ACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGAGGAAGCCAACTCAAGGCACTaGAGGCAGGCTGTGGGCTCT +
Preference number: 4 (lower is better)
Translates to: TVDPLCLTARGRQLGFEEANSRH*RQAVGS
Trigger: AGAGCCCACAGCCTGCCTCCAGTGCCTTGAGTTGGC...TTCCTCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AATGACACCATTAGAGAAGCCTGCAGGGTTCCAGCTGGAGTGAGGGATGGCAGCTCCAGCACCAGCACCTaGCCTGCAGTGCCAGCTACC +
Preference number: 4 (lower is better)
Translates to: NDTIREACRVPAGVRDGSSSTST*PAVPAT
Trigger: GGTAGCTGGCACTGCAGGCCAGGTGCTGGTGCTGGA...GCTGCCATCCCTCACTCCAGCTGGAACCCTGCAGGCTTCTCTAATGGTGTCATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACACCTCTGTGACTCTTGAAGCCTaGGCTGGGTGGCATTTTGGG +
Preference number: 4 (lower is better)
Translates to: AHPHCRTHTCTHTHTHTSVTLEA*AGWHFG
Trigger: CCCAAAATGCCACCCAGCCCAGGCTTCAAGAGTCAC...AGAGGTGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp TGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACCCCGACTGTAGCCTATaGGGATCTTGCTGGGGTCTT +
Preference number: 4 (lower is better)
Translates to: WHLQGSPSSLPHTHVHTHPDCSL*GSCWGL
Trigger: AAGACCCCAGCAAGATCCTCATAGGCTACAGTCGGG...GTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp TGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACAGGAAGCGATGCCACTaGTGTCCTCCTTCCGGATAC +
Preference number: 4 (lower is better)
Translates to: WHLQGSPSSLPHTHVHTHRKRCH*CPPSGY
Trigger: GTATCCGGAAGGAGGACATCAGTGGCATCGCTTCCT...GTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp AGCCGAAGGTGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGATCCCCACTAGCAGCTaGATCAATGGACACAGGCGA +
Preference number: 4 (lower is better)
Translates to: SRRWHLQGSPSSLPHTHVIPTSS*INGHRR
Trigger: TCGCCTGTGTCCATTGATTCAGCTGCTAGTGGGGAT...CACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCACCTTCGGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp CCAGGTCATGCCTGCCTGCGGGGTAGGCAGCCCCTTTCAGTGATGGCCCAAGATTCACATATTCCACGGTaGCATCCCCTGTTGTGTCCA +
Preference number: 4 (lower is better)
Translates to: PGHACLRGRQPLSVMAQDSHIPR*HPLLCP
Trigger: TGGACACAACAGGGGATGTCACCGTGGAATATGTGA...ATCTTGGGCCATCACTGAAAGGGGCTGCCTACCCCGCAGGCAGGCATGACCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGAAGGCGAAGAGCTCCTaGTTAAGCTTCTCGCGCTGC +
Preference number: 4 (lower is better)
Translates to: PGPFMTVDPLCLTARGRQKAKSS*LSFSRC
Trigger: GCAGCGCGAGAAGCTTAAGCAGGAGCTCTTCGCCTT...CTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCCAGCACAGGGCTCTTaGGCTGGTAGTCAAAAAGGC +
Preference number: 4 (lower is better)
Translates to: RPGPFMTVDPLCLTARGRPAQGS*AGSQKG
Trigger: GCCTTTTTGACTACCAGCGCAAGAGCCCTGTGCTGG...CCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GCCCAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTTTAGCTGCACCTCCTTaGCCAGCACCGCCTCCACTG +
Preference number: 4 (lower is better)
Translates to: AQQSLVTGAHNTHRPGASLAAPP*PAPPPL
Trigger: CAGTGGAGGCGGTGCTGGGCAAGGAGGTGCAGCTAA...ACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AAGCCGAAGGTGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTACCACAGGTGCTCGGTaGATTAGCTGCACCTCCTTG +
Preference number: 4 (lower is better)
Translates to: KPKVASTGKPILTAAHTRTTGAR*ISCTSL
Trigger: CAAGGAGGTGCAGCTAATGCACCGAGCACCTGTGGT...ACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCACCTTCGGCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTATGCTCCACAGTCTTGTaGAAGGCGAAGAGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: SLRLGCVQGPASVSGSVLCSTVL*KAKSSC
Trigger: GCAGGAGCTCTTCGCCTTCCACAAGACTGTGGAGCA...TAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTAAGGGGCTGTCTGTGGACCAGATaGCATAGCTGCCATCACTGT +
Preference number: 4 (lower is better)
Translates to: RLGCVQGPASVSGSVLRGCLWTR*HSCHHC
Trigger: ACAGTGATGGCAGCTATGCCATCTGGTCCACAGACA...GCCCCTTAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGGCAGCCCCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGTGTCTGTGGACCAGATaGCATAGCTGCCATCACTGT +
Preference number: 4 (lower is better)
Translates to: RQPLSVMAQDGLAGELGGCLWTR*HSCHHC
Trigger: ACAGTGATGGCAGCTATGCCATCTGGTCCACAGACA...CCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGGGGCTGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGATCATCCTCCACAGCCTaGGCCAGGCTGTCAGCATGT +
Preference number: 4 (lower is better)
Translates to: HDCGSPMPDSQRKAARLRSSSTA*ARLSAC
Trigger: ACATGCTGACAGCCTGGCCCAGGCTGTGGAGGATGA...TCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTACCTCTCTCCGCCTGCTGTaGCTGCTGGAACCTCCAGCG +
Preference number: 4 (lower is better)
Translates to: QQSLVTGAHNTHRPGASTSLRLL*LLEPPA
Trigger: CGCTGGAGGTTCCAGCAGCCACAGCAGGCGGAGAGA...GGTACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAAATACTCTGCTTGAGGAGAGCCGCCTTGCATGTCTaGCGCCTGGGCCAGGTCCCG +
Preference number: 4 (lower is better)
Translates to: EMTGQLSPGVRKILCLRRAALHV*RLGQVP
Trigger: CGGGACCTGGCCCAGGCGCCAGACATGCAAGGCGGC...TCTCCTCAAGCAGAGTATTTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp CCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGTGGGCGCAGCCATTATaGTGGATGATCTCCCAGAGA +
Preference number: 4 (lower is better)
Translates to: PGPFMTVDPLCLTARGRQWAQPL*WMISQR
Trigger: TCTCTGGGAGATCATCCATCATAATGGCTGCGCCCA...CTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp ACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGAGGAAGCCACAGAATCTTGTTaGTGGCCTTGCAGGGGAAGG +
Preference number: 4 (lower is better)
Translates to: TVDPLCLTARGRQLGFEEATESC*WPCRGR
Trigger: CCTTCCCCTGCAAGGCCATCAACAAGATTCTGTGGC...TTCCTCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp AAGCCGAAGGTGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGTCTCAGTGACTTCTTaGGGGACTTCACCCGTGACA +
Preference number: 4 (lower is better)
Translates to: KPKVASTGKPILTAAHTRVSVTS*GTSPVT
Trigger: TGTCACGGGTGAAGTCCCTCAAGAAGTCACTGAGAC...ACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCACCTTCGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp CAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTACCCATCACCCAGGTTGGTaGGGCAGGCAAGGCAGGTCT +
Preference number: 4 (lower is better)
Translates to: QQSLVTGAHNTHRPGASTHHPGW*GRQGRS
Trigger: AGACCTGCCTTGCCTGCCTCACCAACCTGGGTGATG...GGTACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp GAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTTCACATATTCCACGGTaGCATCCCCTGTTGTGTCCA +
Preference number: 4 (lower is better)
Translates to: ELEAGMCSGPSISQRVRVSHIPR*HPLLCP
Trigger: TGGACACAACAGGGGATGTCACCGTGGAATATGTGA...AACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GCTGCCAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGATCTGGCTGTGTGCTGTaGACCGTGAAGAAGTCAATG +
Preference number: 4 (lower is better)
Translates to: AARPGPFMTVDPLCLTARSGCVL*TVKKSM
Trigger: CATTGACTTCTTCACGGTGCACAGCACACAGCCAGA...TCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTGGCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGTACCAAGTGGCTGTGGGCTCTGCTaGTCACCAGCACTTACAATG +
Preference number: 4 (lower is better)
Translates to: PFSDGPRWACWGARRVPSGCGLC*SPALTM
Trigger: CATTGTAAGTGCTGGTGAGCAGCAGAGCCCACAGCC...ACTTGGTACCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAAATACTCTGCTTGAGGAGACAGAGCCCGAGTTGGTaGCCGCCCACATGGTGGGCC +
Preference number: 4 (lower is better)
Translates to: EMTGQLSPGVRKILCLRRQSPSW*PPTWWA
Trigger: GGCCCACCATGTGGGCGGGCACCAACTCGGGCTCTG...TCTCCTCAAGCAGAGTATTTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCAGTCCAGGCCGCTTCTCTCCGCCTaGTGTGGCTGCTGGAACCTC +
Preference number: 4 (lower is better)
Translates to: ARSKYQNCFRNDWPAQSRPLLSA*CGCWNL
Trigger: GAGGTTCCAGCAGCCACAGCAGGCGGAGAGAAGCGG...CCTGGACTGAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp ACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGAGGAAACCACAGGTGCTCGGTaGATTAGCTGCACCTCCTTG +
Preference number: 4 (lower is better)
Translates to: TVDPLCLTARGRQLGFEETTGAR*ISCTSL
Trigger: CAAGGAGGTGCAGCTAATGCACCGAGCACCTGTGGT...TTCCTCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGTACCAAGTTGCTCCACAGTCTTGTaGAAGGCGAAGAGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: PFSDGPRWACWGARRVPSCSTVL*KAKSSC
Trigger: GCAGGAGCTCTTCGCCTTCCACAAGACTGTGGAGCA...ACTTGGTACCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGTGGCATTGTCAAAACTaGGTCTGCTGGGTGGGTGGA +
Preference number: 4 (lower is better)
Translates to: RPGPFMTVDPLCLTARGRWHCQN*VCWVGG
Trigger: TCCACCCACCCAGCAGACCCAGTTTTGACAATGCCA...CCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCATGGCATTGTCAAAACTaGGTCTGCTGGGTGGGTGGA +
Preference number: 4 (lower is better)
Translates to: HLQGSPSSLPHTHVHTHAWHCQN*VCWVGG
Trigger: TCCACCCACCCAGCAGACCCAGTTTTGACAATGCCA...TGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp ACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCCAGCAGCCCCGTGTGTaGGTTCAGCCGCTCGTGACC +
Preference number: 4 (lower is better)
Translates to: THRPGASTKTALEMTGQLQQPRV*VQPLVT
Trigger: GGTCACGAGCGGCTGAACCCACACACGGGGCTGCTG...GAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCAGTCCAGGCACATGGTGGGCCCGTaGTGGGTCGCATCTCGAAGG +
Preference number: 4 (lower is better)
Translates to: ARSKYQNCFRNDWPAQSRHMVGP*WVASRR
Trigger: CCTTCGAGATGCGACCCACCACGGGCCCACCATGTG...CCTGGACTGAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AATGACACCATTAGAGAAGCCTGCAGGGTTCCAGCTGGAGTGAGGGATGGCAGCGGCACCGAGAAGACGTaGACATCACCCAGGTTGGTG +
Preference number: 4 (lower is better)
Translates to: NDTIREACRVPAGVRDGSGTEKT*TSPRLV
Trigger: CACCAACCTGGGTGATGTCCACGTCTTCTCGGTGCC...GCTGCCATCCCTCACTCCAGCTGGAACCCTGCAGGCTTCTCTAATGGTGTCATT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCAGGCTGGGTGGCATTTTaGGGCCAGCTTATATCCAGA +
Preference number: 4 (lower is better)
Translates to: HLQGSPSSLPHTHVHTHAGWVAF*GQLISR
Trigger: TCTGGATATAAGCTGGCCCCAAAATGCCACCCAGCC...TGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGTACCAAGTGTGACTCTTGAAGCCTaGGCTGGGTGGCATTTTGGG +
Preference number: 4 (lower is better)
Translates to: PFSDGPRWACWGARRVPSVTLEA*AGWHFG
Trigger: CCCAAAATGCCACCCAGCCCAGGCTTCAAGAGTCAC...ACTTGGTACCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp GGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTATGGGCGCAGCCATTATaGTGGATGATCTCCCAGAGA +
Preference number: 4 (lower is better)
Translates to: GPFMTVDPLCLTARGRQLWAQPL*WMISQR
Trigger: TCTCTGGGAGATCATCCATCATAATGGCTGCGCCCA...TAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp CCGACAAGCATCATCTGCCTCCAGGTTCCGCAGGTTCTTCTCAGAGTCCTCAGGAAAGAATCATTGGGGTaGAGGGTGCACCTAGCCAGC +
Preference number: 4 (lower is better)
Translates to: PTSIICLQVPQVLLRVLRKESLG*RVHLAS
Trigger: GCTGGCTAGGTGCACCCTTCACCCCAATGATTCTTT...CCTGAGGACTCTGAGAAGAACCTGCGGAACCTGGAGGCAGATGATGCTTGTCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp ACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGAGGAAGTCTCAGTGACTTCTTaGGGGACTTCACCCGTGACA +
Preference number: 4 (lower is better)
Translates to: TVDPLCLTARGRQLGFEEVSVTS*GTSPVT
Trigger: TGTCACGGGTGAAGTCCCTCAAGAAGTCACTGAGAC...TTCCTCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp TTAGAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAAATACTCTGCTTGAGGTTAAGCTTCTCGCGCTaGGGGTCGGCGCCCTGCCGC +
Preference number: 4 (lower is better)
Translates to: LEMTGQLSPGVRKILCLRLSFSR*GSAPCR
Trigger: GCGGCAGGGCGCCGACCCGCAGCGCGAGAAGCTTAA...CCTCAAGCAGAGTATTTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTCTAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp ACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGAGGAAATCTTGCTGGGGTCTTaGAGATGTCCCTGGAGTGAC +
Preference number: 4 (lower is better)
Translates to: TVDPLCLTARGRQLGFEEILLGS*RCPWSD
Trigger: GTCACTCCAGGGACATCTGCAAGACCCCAGCAAGAT...TTCCTCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGTCTGGGCTGTGTACTTaGAAAGCGCAACCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: RPGPFMTVDPLCLTARGRSGLCT*KAQPSG
Trigger: TCCAGAAGGTTGCGCTTTGCAAGTACACAGCCCAGA...CCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp AAGCCGAAGGTGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTTCTGGGCTGTGTACTTaGAAAGCGCAACCTTCTGGA +
Preference number: 4 (lower is better)
Translates to: KPKVASTGKPILTAAHTRSGLCT*KAQPSG
Trigger: TCCAGAAGGTTGCGCTTTGCAAGTACACAGCCCAGA...ACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCACCTTCGGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTGAATTGTTCCTCAGATaGAATGAGCACAGCATGGCC +
Preference number: 4 (lower is better)
Translates to: ELEAGMCSGPSISQRVRVELFLR*NEHSMA
Trigger: GGCCATGCTGTGCTCATTGCATCTGAGGAACAATTC...AACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCAGACTGGCAGGGAAACTaGCATTGTCAAAACTGGGTC +
Preference number: 4 (lower is better)
Translates to: HLQGSPSSLPHTHVHTHADWQGN*HCQNWV
Trigger: GACCCAGTTTTGACAATGCCAGTTTCCCTGCCAGTC...TGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp ACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCAGTGGGCTGCAGCGTTaGGGGGCTGCCAGTGTCTGT +
Preference number: 4 (lower is better)
Translates to: THRPGASTKTALEMTGQLSGLQR*GAASVC
Trigger: ACAGACACTGGCAGCCCCCCAACGCTGCAGCCCACT...GAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGTACCAAGTAGGCTCCACTCAGCATaGAGTGTGACAGCAGTGACA +
Preference number: 4 (lower is better)
Translates to: PFSDGPRWACWGARRVPSRLHSA*SVTAVT
Trigger: TGTCACTGCTGTCACACTCCATGCTGAGTGGAGCCT...ACTTGGTACCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTACCCATCCAGCACAGCAATaGCCACCACAGGTGCTCGGT +
Preference number: 4 (lower is better)
Translates to: QQSLVTGAHNTHRPGASTHPAQQ*PPQVLG
Trigger: ACCGAGCACCTGTGGTGGCCATTGCTGTGCTGGATG...GGTACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTACCTCAGCTCGCTTGCTGTaGGCAGAGCTAGGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: QQSLVTGAHNTHRPGASTSARLL*AELGLP
Trigger: AGGAAGCCCTAGCTCTGCCCACAGCAAGCGAGCTGA...GGTACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp GCCCAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTAAAGAATCATTGGGGTaGAGGGTGCACCTAGCCAGC +
Preference number: 4 (lower is better)
Translates to: AQQSLVTGAHNTHRPGASKESLG*RVHLAS
Trigger: GCTGGCTAGGTGCACCCTTCACCCCAATGATTCTTT...ACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp GGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTATCTGGCTGTGTGCTGTaGACCGTGAAGAAGTCAATG +
Preference number: 4 (lower is better)
Translates to: GPFMTVDPLCLTARGRQLSGCVL*TVKKSM
Trigger: CATTGACTTCTTCACGGTGCACAGCACACAGCCAGA...TAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp TACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCAGACCGAGGCTCAATaGGGCGCTGCACGGGTGTCA +
Preference number: 4 (lower is better)
Translates to: YTQARSKYQNCFRNDWPAQTEAQ*GAARVS
Trigger: TGACACCCGTGCAGCGCCGCATTGAGCCTCGGTCTG...AGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GCCCAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTCCAGCAGTGCCAGGGTaGCTACATCCAGGAAGAATA +
Preference number: 4 (lower is better)
Translates to: AQQSLVTGAHNTHRPGASPAVPG*LHPGRI
Trigger: TATTCTTCCTGGATGTAGCCACCCTGGCACTGCTGG...ACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTACCCTGGTCCCATTAGCCTaGCTCAGCTTGGGTGACTCT +
Preference number: 4 (lower is better)
Translates to: QQSLVTGAHNTHRPGASTLVPLA*LSLGDS
Trigger: AGAGTCACCCAAGCTGAGCCAGGCTAATGGGACCAG...GGTACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp AATACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCAGATGTCCCTGGAGTaGCTCCACAGGGCCCAAGGC +
Preference number: 4 (lower is better)
Translates to: NTHRPGASTKTALEMTGQQMSLE*LHRAQG
Trigger: GCCTTGGGCCCTGTGGAGTCACTCCAGGGACATCTG...CTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp GCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCAGTCCAGGGATAAAGTGGTCTCCTaGCTCACAGCTCCGCCACAG +
Preference number: 4 (lower is better)
Translates to: ARSKYQNCFRNDWPAQSRDKVVS*LTAPPQ
Trigger: CTGTGGCGGAGCTGTGAGTCAGGAGACCACTTTATC...CCTGGACTGAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR GCA 90 bp CATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAGGCTTCGAGAATTGTTCCTCAGATaGAATGAGCACAGCATGGCC +
Preference number: 4 (lower is better)
Translates to: HDCGSPMPDSQRKAARLRELFLR*NEHSMA
Trigger: GGCCATGCTGTGCTCATTGCATCTGAGGAACAATTC...TCGAAGCCTAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTACCCCAGCAGTGCCAGGGTaGCTACATCCAGGAAGAATA +
Preference number: 4 (lower is better)
Translates to: QQSLVTGAHNTHRPGASTPAVPG*LHPGRI
Trigger: TATTCTTCCTGGATGTAGCCACCCTGGCACTGCTGG...GGTACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCTGAAGATGATAAAGTaGTCTCCTGACTCACAGCTC +
Preference number: 4 (lower is better)
Translates to: RPGPFMTVDPLCLTARGRLKMIK*SPDSQL
Trigger: GAGCTGTGAGTCAGGAGACCACTTTATCATCTTCAG...CCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AATACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCACATGGTGGGCCCGTaGTGGGTCGCATCTCGAAGG +
Preference number: 4 (lower is better)
Translates to: NTHRPGASTKTALEMTGQHMVGP*WVASRR
Trigger: CCTTCGAGATGCGACCCACCACGGGCCCACCATGTG...CTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp GGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACAGCGCTCAAATTCCGATaGAGAAATCAAGTAAAAGCC +
Preference number: 4 (lower is better)
Translates to: GKPILTAAHTRAHTRTHTALKFR*RNQVKA
Trigger: GGCTTTTACTTGATTTCTCCATCGGAATTTGAGCGC...TGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp CCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGTACCAAGTCTGAAGATGATAAAGTaGTCTCCTGACTCACAGCTC +
Preference number: 4 (lower is better)
Translates to: PFSDGPRWACWGARRVPSLKMIK*SPDSQL
Trigger: GAGCTGTGAGTCAGGAGACCACTTTATCATCTTCAG...ACTTGGTACCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp ACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCGTCACACTCATCCTCTaGCTGTGTGCTGTGCACCGT +
Preference number: 4 (lower is better)
Translates to: THRPGASTKTALEMTGQLVTLIL*LCAVHR
Trigger: ACGGTGCACAGCACACAGCCAGAGGATGAGTGTGAC...GAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp TACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTGCTTGCTGGGGACATTaGCAACATGGGCAGAGCAGG +
Preference number: 4 (lower is better)
Translates to: YTQARSKYQNCFRNDWPAACWGH*QHGQSR
Trigger: CCTGCTCTGCCCATGTTGCCAATGTCCCCAGCAAGC...AGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp TTAGAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAAATACTCTGCTTGAGGGGGCCCACAGCTTGCTaGGGACATTGGCAACATGGG +
Preference number: 4 (lower is better)
Translates to: LEMTGQLSPGVRKILCLRGPTAC*GHWQHG
Trigger: CCCATGTTGCCAATGTCCCCAGCAAGCTGTGGGCCC...CCTCAAGCAGAGTATTTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTCTAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAATCTCTCCGCCTGCTGTaGCTGCTGGAACCTCCAGCG +
Preference number: 4 (lower is better)
Translates to: STKTALEMTGQLSPGVRKSLRLL*LLEPPA
Trigger: CGCTGGAGGTTCCAGCAGCCACAGCAGGCGGAGAGA...TTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGACACGACAGCCTTCATaGGCTGTAAGCTTGAATTTA +
Preference number: 4 (lower is better)
Translates to: RPGPFMTVDPLCLTARGRTRQPS*AVSLNL
Trigger: TAAATTCAAGCTTACAGCCCATGAAGGCTGTCGTGT...CCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTAACACGACAGCCTTCATaGGCTGTAAGCTTGAATTTA +
Preference number: 4 (lower is better)
Translates to: SLRLGCVQGPASVSGSVLTRQPS*AVSLNL
Trigger: TAAATTCAAGCTTACAGCCCATGAAGGCTGTCGTGT...TAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp TACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTGGCACCGAGAAGACGTaGACATCACCCAGGTTGGTG +
Preference number: 4 (lower is better)
Translates to: YTQARSKYQNCFRNDWPAGTEKT*TSPRLV
Trigger: CACCAACCTGGGTGATGTCCACGTCTTCTCGGTGCC...AGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp CAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTACCAGCCATTATGATGGATaGTCTCCCAGAGATGCAAGC +
Preference number: 4 (lower is better)
Translates to: QQSLVTGAHNTHRPGASTSHYDG*SPRDAS
Trigger: GCTTGCATCTCTGGGAGATCATCCATCATAATGGCT...GGTACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp GAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAAATACTCTGCTTGAGGAGAGCCACAGAATCTTGTTaGTGGCCTTGCAGGGGAAGG +
Preference number: 4 (lower is better)
Translates to: EMTGQLSPGVRKILCLRRATESC*WPCRGR
Trigger: CCTTCCCCTGCAAGGCCATCAACAAGATTCTGTGGC...TCTCCTCAAGCAGAGTATTTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp TACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTGATAAAGTGGTCTCCTaGCTCACAGCTCCGCCACAG +
Preference number: 4 (lower is better)
Translates to: YTQARSKYQNCFRNDWPADKVVS*LTAPPQ
Trigger: CTGTGGCGGAGCTGTGAGTCAGGAGACCACTTTATC...AGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp GAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAAATACTCTGCTTGAGGAGAAGGAAGCGATGCCACTaGTGTCCTCCTTCCGGATAC +
Preference number: 4 (lower is better)
Translates to: EMTGQLSPGVRKILCLRRRKRCH*CPPSGY
Trigger: GTATCCGGAAGGAGGACATCAGTGGCATCGCTTCCT...TCTCCTCAAGCAGAGTATTTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp ACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCATCCCCACTAGCAGCTaGATCAATGGACACAGGCGA +
Preference number: 4 (lower is better)
Translates to: THRPGASTKTALEMTGQLIPTSS*INGHRR
Trigger: TCGCCTGTGTCCATTGATTCAGCTGCTAGTGGGGAT...GAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGGCCCGACAAGCATCATCTGCCTCCAGGTTCCGCAGGTTCTTCTCAGAGTCCTGCGCTCAAATTCCGATaGAGAAATCAAGTAAAAGCC +
Preference number: 4 (lower is better)
Translates to: RPDKHHLPPGSAGSSQSPALKFR*RNQVKA
Trigger: GGCTTTTACTTGATTTCTCCATCGGAATTTGAGCGC...AGGACTCTGAGAAGAACCTGCGGAACCTGGAGGCAGATGATGCTTGTCGGGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp ACACAATACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGTCTTGCAGATGTCCCTaGAGTGACTCCACAGGGCCC +
Preference number: 4 (lower is better)
Translates to: TQYTQARSKYQNCFRNDWSCRCP*SDSTGP
Trigger: GGGCCCTGTGGAGTCACTCCAGGGACATCTGCAAGA...CCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp ACACAATACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGAGCACGGCTAAGGCCTaGGGGTTGTCACACTCATCC +
Preference number: 4 (lower is better)
Translates to: TQYTQARSKYQNCFRNDWSTAKA*GLSHSS
Trigger: GGATGAGTGTGACAACCCCCAGGCCTTAGCCGTGCT...CCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp ACACAATACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCATCCAGCACAGCAATaGCCACCACAGGTGCTCGGT +
Preference number: 4 (lower is better)
Translates to: TQYTQARSKYQNCFRNDWHPAQQ*PPQVLG
Trigger: ACCGAGCACCTGTGGTGGCCATTGCTGTGCTGGATG...CCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp ACACAATACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGTCAGCTCGCTTGCTGTaGGCAGAGCTAGGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: TQYTQARSKYQNCFRNDWSARLL*AELGLP
Trigger: AGGAAGCCCTAGCTCTGCCCACAGCAAGCGAGCTGA...CCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp TTAGAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAAATACTCTGCTTGAGGAGGCTCCACTCAGCATaGAGTGTGACAGCAGTGACA +
Preference number: 4 (lower is better)
Translates to: LEMTGQLSPGVRKILCLRRLHSA*SVTAVT
Trigger: TGTCACTGCTGTCACACTCCATGCTGAGTGGAGCCT...CCTCAAGCAGAGTATTTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTCTAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AATACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGGGCTGGGTGGCATTTTaGGGCCAGCTTATATCCAGA +
Preference number: 4 (lower is better)
Translates to: NTHRPGASTKTALEMTGQGWVAF*GQLISR
Trigger: TCTGGATATAAGCTGGCCCCAAAATGCCACCCAGCC...CTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR TCA 90 bp TACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTAGCCATTATGATGGATaGTCTCCCAGAGATGCAAGC +
Preference number: 4 (lower is better)
Translates to: YTQARSKYQNCFRNDWPASHYDG*SPRDAS
Trigger: GCTTGCATCTCTGGGAGATCATCCATCATAATGGCT...AGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CCA 90 bp AGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAAACAGTGGCCCCTCCATaGCCAAAGAATCATTGGGGT +
Preference number: 4 (lower is better)
Translates to: STKTALEMTGQLSPGVRKTVAPP*PKNHWG
Trigger: ACCCCAATGATTCTTTGGCCATGGAGGGGCCACTGT...TTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp TGGCGCCTGGGCCAGGTCCCGGGAAGCCTCATAGGGCTCAGGCAGTaGCCGGCCACGACCATCCAGCACAGCAATGGCCACCACAGGTGC +
Preference number: 5 (lower is better)
Translates to: WRLGQVPGSLIGLRQ*PATTIQHSNGHHRC
Trigger: GCACCTGTGGTGGCCATTGCTGTGCTGGATGGTCGTGGCCGGCCACTGCCTGAGCCCTATGAGGCTTCCCGGGACCTGGCCCAGGCGCCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp ACACCGGAGAGCGAGTCGTCAGCAGACCGAGGCTCAATGCGGCGCTaGACGGGTGTCATCTCCAGGTCGTGTGGGCAGGTCTGCTCGGCC +
Preference number: 5 (lower is better)
Translates to: TPESESSADRGSMRR*TGVISRSCGQVCSA
Trigger: GGCCGAGCAGACCTGCCCACACGACCTGGAGATGACACCCGTGCAGCGCCGCATTGAGCCTCGGTCTGCTGACGACTCGCTCTCCGGTGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp CGGTGCATTAGCTGCACCTCCTTGCCCAGCACCGCCTCCACTGCCTaGTCAGGCCGCTTCTCTCCGCCTGCTGTGGCTGCTGGAACCTCC +
Preference number: 5 (lower is better)
Translates to: RCISCTSLPSTASTA*SGRFSPPAVAAGTS
Trigger: GGAGGTTCCAGCAGCCACAGCAGGCGGAGAGAAGCGGCCTGAGCAGGCAGTGGAGGCGGTGCTGGGCAAGGAGGTGCAGCTAATGCACCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp CTGCTGGAACCTCCAGCGCATAGGCGAACACAGAGCCCGAGTTGGTaGCCGCCCACATGGTGGGCCCGTGGTGGGTCGCATCTCGAAGGA +
Preference number: 5 (lower is better)
Translates to: LLEPPAHRRTQSPSW*PPTWWARGGSHLEG
Trigger: TCCTTCGAGATGCGACCCACCACGGGCCCACCATGTGGGCGGGCACCAACTCGGGCTCTGTGTTCGCCTATGCGCTGGAGGTTCCAGCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp CGCCTCCACTGCCTGCTCAGGCCGCTTCTCTCCGCCTGCTGTGGCTaGTGGAACCTCCAGCGCATAGGCGAACACAGAGCCCGAGTTGGT +
Preference number: 5 (lower is better)
Translates to: RLHCLLRPLLSACCG*WNLQRIGEHRARVG
Trigger: ACCAACTCGGGCTCTGTGTTCGCCTATGCGCTGGAGGTTCCAGCAGCCACAGCAGGCGGAGAGAAGCGGCCTGAGCAGGCAGTGGAGGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp CAGCAATGGCCACCACAGGTGCTCGGTGCATTAGCTGCACCTCCTTaGCCAGCACCGCCTCCACTGCCTGCTCAGGCCGCTTCTCTCCGC +
Preference number: 5 (lower is better)
Translates to: QQWPPQVLGALAAPP*PAPPPLPAQAASLR
Trigger: GCGGAGAGAAGCGGCCTGAGCAGGCAGTGGAGGCGGTGCTGGGCAAGGAGGTGCAGCTAATGCACCGAGCACCTGTGGTGGCCATTGCTG
66% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp CGGCCACGACCATCCAGCACAGCAATGGCCACCACAGGTGCTCGGTaGATTAGCTGCACCTCCTTGCCCAGCACCGCCTCCACTGCCTGC +
Preference number: 5 (lower is better)
Translates to: RPRPSSTAMATTGAR*ISCTSLPSTASTAC
Trigger: GCAGGCAGTGGAGGCGGTGCTGGGCAAGGAGGTGCAGCTAATGCACCGAGCACCTGTGGTGGCCATTGCTGTGCTGGATGGTCGTGGCCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp CCATCCTCATGGCCAGTGAGCAGCAGCCCACGCTGCGAGGGTTCCTaGGCCAAGTTCCGGCCCCCGGTAATGGGCCAACTCAAGGCACTG +
Preference number: 5 (lower is better)
Translates to: PSSWPVSSSPRCEGS*AKFRPPVMGQLKAL
Trigger: CAGTGCCTTGAGTTGGCCCATTACCGGGGGCCGGAACTTGGCCCAGGAACCCTCGCAGCGTGGGCTGCTGCTCACTGGCCATGAGGATGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp CCGAGGCTCAATGCGGCGCTGCACGGGTGTCATCTCCAGGTCGTGTaGGCAGGTCTGCTCGGCCAGCTGGGCATTGGCCTCCTGCAACTT +
Preference number: 5 (lower is better)
Translates to: PRLNAALHGCHLQVV*AGLLGQLGIGLLQL
Trigger: AAGTTGCAGGAGGCCAATGCCCAGCTGGCCGAGCAGACCTGCCCACACGACCTGGAGATGACACCCGTGCAGCGCCGCATTGAGCCTCGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp TGGCTGCTGGAACCTCCAGCGCATAGGCGAACACAGAGCCCGAGTTaGTGCCCGCCCACATGGTGGGCCCGTGGTGGGTCGCATCTCGAA +
Preference number: 5 (lower is better)
Translates to: WLLEPPAHRRTQSPS*CPPTWWARGGSHLE
Trigger: TTCGAGATGCGACCCACCACGGGCCCACCATGTGGGCGGGCACCAACTCGGGCTCTGTGTTCGCCTATGCGCTGGAGGTTCCAGCAGCCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp ATGCGGCGCTGCACGGGTGTCATCTCCAGGTCGTGTGGGCAGGTCTaGTCGGCCAGCTGGGCATTGGCCTCCTGCAACTTGCTACTGGCA +
Preference number: 5 (lower is better)
Translates to: MRRCTGVISRSCGQV*SASWALASCNLLLA
Trigger: TGCCAGTAGCAAGTTGCAGGAGGCCAATGCCCAGCTGGCCGAGCAGACCTGCCCACACGACCTGGAGATGACACCCGTGCAGCGCCGCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp GAGGCTCCACTCAGCATGGAGTGTGACAGCAGTGACAGCGGCGGGTaGGAGGCACTGTATCAGCATGCGGGGCTGGAATCCGGCAGGCCA +
Preference number: 5 (lower is better)
Translates to: EAPLSMECDSSDSGG*EALYQHAGLESGRP
Trigger: TGGCCTGCCGGATTCCAGCCCCGCATGCTGATACAGTGCCTCCCACCCGCCGCTGTCACTGCTGTCACACTCCATGCTGAGTGGAGCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp CCAGCGCATAGGCGAACACAGAGCCCGAGTTGGTGCCCGCCCACATaGTGGGCCCGTGGTGGGTCGCATCTCGAAGGAACGTGTCAGCAA +
Preference number: 5 (lower is better)
Translates to: PAHRRTQSPSWCPPT*WARGGSHLEGTCQQ
Trigger: TTGCTGACACGTTCCTTCGAGATGCGACCCACCACGGGCCCACCATGTGGGCGGGCACCAACTCGGGCTCTGTGTTCGCCTATGCGCTGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp CCGGTAATGGGCCAACTCAAGGCACTGGAGGCAGGCTGTGGGCTCTaGTGCTCACCAGCACTTACAATGCGGGCCCACAGCTTGCTGGGG +
Preference number: 5 (lower is better)
Translates to: PVMGQLKALEAGCGL*CSPALTMRAHSLLG
Trigger: CCCCAGCAAGCTGTGGGCCCGCATTGTAAGTGCTGGTGAGCAGCAGAGCCCACAGCCTGCCTCCAGTGCCTTGAGTTGGCCCATTACCGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp AGCGTACAACACCGGAGAGCGAGTCGTCAGCAGACCGAGGCTCAATaGGGCGCTGCACGGGTGTCATCTCCAGGTCGTGTGGGCAGGTCT +
Preference number: 5 (lower is better)
Translates to: SVQHRRASRQQTEAQ*GAARVSSPGRVGRS
Trigger: AGACCTGCCCACACGACCTGGAGATGACACCCGTGCAGCGCCGCATTGAGCCTCGGTCTGCTGACGACTCGCTCTCCGGTGTTGTACGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp AAGCAGCCCACCTTGCGGAAGGGCGGCCAGTCATCCTCCACAGCCTaGGCCAGGCTGTCAGCATGTTCACAGTCCGTCTGGAAGAGGCCA +
Preference number: 5 (lower is better)
Translates to: KQPTLRKGGQSSSTA*ARLSACSQSVWKRP
Trigger: TGGCCTCTTCCAGACGGACTGTGAACATGCTGACAGCCTGGCCCAGGCTGTGGAGGATGACTGGCCGCCCTTCCGCAAGGTGGGCTGCTT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp CATAGGGCTCAGGCAGTGGCCGGCCACGACCATCCAGCACAGCAATaGCCACCACAGGTGCTCGGTGCATTAGCTGCACCTCCTTGCCCA +
Preference number: 5 (lower is better)
Translates to: HRAQAVAGHDHPAQQ*PPQVLGALAAPPCP
Trigger: TGGGCAAGGAGGTGCAGCTAATGCACCGAGCACCTGTGGTGGCCATTGCTGTGCTGGATGGTCGTGGCCGGCCACTGCCTGAGCCCTATG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 90 bp GCCTCAGGCCAGGCACCGAGAAGACGTGGACATCACCCAGGTTGGTaGGGCAGGCAAGGCAGGTCTCGGCATAGTCCTCAGACATCACGC +
Preference number: 5 (lower is better)
Translates to: ASGQAPRRRGHHPGW*GRQGRSRHSPQTSR
Trigger: GCGTGATGTCTGAGGACTATGCCGAGACCTGCCTTGCCTGCCTCACCAACCTGGGTGATGTCCACGTCTTCTCGGTGCCTGGCCTGAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp TTGTTCCTCAGATGCAATGAGCACAGCATGGCCGCCTTGCATGTCTaGCGCCTGGGCCAGGTCCCGGGAAGCCTCATAGGGCTCAGGCAG +
Preference number: 5 (lower is better)
Translates to: LFLRCNEHSMAALHV*RLGQVPGSLIGLRQ
Trigger: CTGCCTGAGCCCTATGAGGCTTCCCGGGACCTGGCCCAGGCGCCAGACATGCAAGGCGGCCATGCTGTGCTCATTGCATCTGAGGAACAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp CCAGGTCATGCCTGCCTGCGGGGTAGGCAGCCCCTTTCAGTGATGGCCCAAGATGCTAAGGCCTGGGGGTaGTCACACTCATCCTCTGGC +
Preference number: 5 (lower is better)
Translates to: PGHACLRGRQPLSVMAQDAKAWG*SHSSSG
Trigger: GCCAGAGGATGAGTGTGACAACCCCCAGGCCTTAGC...ATCTTGGGCCATCACTGAAAGGGGCTGCCTACCCCGCAGGCAGGCATGACCTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTAAGGGGCATGCGGGCCCACAGCTaGCTGGGGACATTGGCAACA +
Preference number: 5 (lower is better)
Translates to: RLGCVQGPASVSGSVLRGMRAHS*LGTLAT
Trigger: TGTTGCCAATGTCCCCAGCAAGCTGTGGGCCCGCAT...GCCCCTTAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp GGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACAAACACAGAGCCCGAGTaGGTGCCCGCCCACATGGTG +
Preference number: 5 (lower is better)
Translates to: GKPILTAAHTRAHTRTHTNTEPE*VPAHMV
Trigger: CACCATGTGGGCGGGCACCAACTCGGGCTCTGTGTT...TGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AGGCAGCCCCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGTGGACATCACCCAGGTaGGTGAGGCAGGCAAGGCAG +
Preference number: 5 (lower is better)
Translates to: RQPLSVMAQDGLAGELGGWTSPR*VRQARQ
Trigger: CTGCCTTGCCTGCCTCACCAACCTGGGTGATGTCCA...CCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGGGGCTGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp GTAATGGGCCAACTCAAGGCACTGGAGGCAGGCTGTGGGCTCTGCTaGTCACCAGCACTTACAATGCGGGCCCACAGCTTGCTGGGGACA +
Preference number: 5 (lower is better)
Translates to: VMGQLKALEAGCGLC*SPALTMRAHSLLGT
Trigger: TGTCCCCAGCAAGCTGTGGGCCCGCATTGTAAGTGCTGGTGAGCAGCAGAGCCCACAGCCTGCCTCCAGTGCCTTGAGTTGGCCCATTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AGGCAGCCCCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGAGCTTGCTGGGGACATaGGCAACATGGGCAGAGCAG +
Preference number: 5 (lower is better)
Translates to: RQPLSVMAQDGLAGELGGSLLGT*ATWAEQ
Trigger: CTGCTCTGCCCATGTTGCCAATGTCCCCAGCAAGCT...CCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGGGGCTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp GGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACAATTAGCTGCACCTCCTaGCCCAGCACCGCCTCCACT +
Preference number: 5 (lower is better)
Translates to: GKPILTAAHTRAHTRTHTISCTS*PSTAST
Trigger: AGTGGAGGCGGTGCTGGGCAAGGAGGTGCAGCTAAT...TGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AGGCAGCCCCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGATGGTATCAGCTCGCTaGCTGTGGGCAGAGCTAGGG +
Preference number: 5 (lower is better)
Translates to: RQPLSVMAQDGLAGELGGMVSAR*LWAELG
Trigger: CCCTAGCTCTGCCCACAGCAAGCGAGCTGATACCAT...CCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGGGGCTGCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 90 bp CACACCGGTAATCATCTGGCACACTGCGCAGAACCACATCTGGGCTaGGAGTCTGCCCCTCCAGCAGTGCCAGGGTGGCTACATCCAGGA +
Preference number: 5 (lower is better)
Translates to: HTGNHLAHCAEPHLG*ESAPPAVPGWLHPG
Trigger: TCCTGGATGTAGCCACCCTGGCACTGCTGGAGGGGCAGACTCTCAGCCCAGATGTGGTTCTGCGCAGTGTGCCAGATGATTACCGGTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTAAGGGGCCGCCACAGAATCTTGTaGATGGCCTTGCAGGGGAAG +
Preference number: 5 (lower is better)
Translates to: RLGCVQGPASVSGSVLRGRHRIL*MALQGK
Trigger: CTTCCCCTGCAAGGCCATCAACAAGATTCTGTGGCG...GCCCCTTAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp CCAGGTCATGCCTGCCTGCGGGGTAGGCAGCCCCTTTCAGTGATGGCCCAAGATCGCCACAGAATCTTGTaGATGGCCTTGCAGGGGAAG +
Preference number: 5 (lower is better)
Translates to: PGHACLRGRQPLSVMAQDRHRIL*MALQGK
Trigger: CTTCCCCTGCAAGGCCATCAACAAGATTCTGTGGCG...ATCTTGGGCCATCACTGAAAGGGGCTGCCTACCCCGCAGGCAGGCATGACCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp GCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACACCTCTCTCCGCCACAGAATCTaGTTGATGGCCTTGCAGGGG +
Preference number: 5 (lower is better)
Translates to: AHPHCRTHTCTHTHTHTSLRHRI*LMALQG
Trigger: CCCCTGCAAGGCCATCAACAAGATTCTGTGGCGGAG...AGAGGTGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTAATGCGGGCCCACAGCTaGCTGGGGACATTGGCAACA +
Preference number: 5 (lower is better)
Translates to: SLRLGCVQGPASVSGSVLMRAHS*LGTLAT
Trigger: TGTTGCCAATGTCCCCAGCAAGCTGTGGGCCCGCAT...TAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp CGGCTGAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCATCTGGGCTGTGTACTaGCAAAGCGCAACCTTCTGG +
Preference number: 5 (lower is better)
Translates to: RLSLRLGCVQGPASVSGSIWAVY*QSATFW
Trigger: CCAGAAGGTTGCGCTTTGCAAGTACACAGCCCAGAT...GGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGTCGGCCAGCTGGGCATaGGCCTCCTGCAACTTGCTA +
Preference number: 5 (lower is better)
Translates to: RPGPFMTVDPLCLTARGRSASWA*ASCNLL
Trigger: TAGCAAGTTGCAGGAGGCCAATGCCCAGCTGGCCGA...CCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp CCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGTGGACATCACCCAGGTaGGTGAGGCAGGCAAGGCAG +
Preference number: 5 (lower is better)
Translates to: PGPFMTVDPLCLTARGRQWTSPR*VRQARQ
Trigger: CTGCCTTGCCTGCCTCACCAACCTGGGTGATGTCCA...CTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp GGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACGCACACACACAGGGCTGGGTGGCATTTaGGGGCCAGCTTATATCCAG +
Preference number: 5 (lower is better)
Translates to: GKPILTAAHTRAHTRTHTGLGGI*GPAYIQ
Trigger: CTGGATATAAGCTGGCCCCAAAATGCCACCCAGCCC...TGTGTGTGTGCGTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp CTTTCCACACCGGTAATCATCTGGCACACTGCGCAGAACCACATCTaGGCTGAGAGTCTGCCCCTCCAGCAGTGCCAGGGTGGCTACATC +
Preference number: 5 (lower is better)
Translates to: LSTPVIIWHTAQNHI*AESLPLQQCQGGYI
Trigger: GATGTAGCCACCCTGGCACTGCTGGAGGGGCAGACTCTCAGCCCAGATGTGGTTCTGCGCAGTGTGCCAGATGATTACCGGTGTGGAAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp AGTGTGAACACCTTGAATTGTTCCTCAGATGCAATGAGCACAGCATaGCCGCCTTGCATGTCTGGCGCCTGGGCCAGGTCCCGGGAAGCC +
Preference number: 5 (lower is better)
Translates to: SVNTLNCSSDAMSTA*PPCMSGAWARSREA
Trigger: GGCTTCCCGGGACCTGGCCCAGGCGCCAGACATGCAAGGCGGCCATGCTGTGCTCATTGCATCTGAGGAACAATTCAAGGTGTTCACACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGTTAAGGGGCGCAGGGAAACTGGCATaGTCAAAACTGGGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: RLGCVQGPASVSGSVLRGAGKLA*SKLGLL
Trigger: CAGCAGACCCAGTTTTGACAATGCCAGTTTCCCTGC...GCCCCTTAACACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AAGCCGAAGGTGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTAGCTTGCTGGGGACATaGGCAACATGGGCAGAGCAG +
Preference number: 5 (lower is better)
Translates to: KPKVASTGKPILTAAHTRSLLGT*ATWAEQ
Trigger: CTGCTCTGCCCATGTTGCCAATGTCCCCAGCAAGCT...ACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCACCTTCGGCTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp CCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGTTGGCCTCCTGCAACTaGCTACTGGCAGCAGGAGTC +
Preference number: 5 (lower is better)
Translates to: PGPFMTVDPLCLTARGRQLASCN*LLAAGV
Trigger: GACTCCTGCTGCCAGTAGCAAGTTGCAGGAGGCCAA...CTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AATGACACCATTAGAGAAGCCTGCAGGGTTCCAGCTGGAGTGAGGGATGGCAGCAACACAGAGCCCGAGTaGGTGCCCGCCCACATGGTG +
Preference number: 5 (lower is better)
Translates to: NDTIREACRVPAGVRDGSNTEPE*VPAHMV
Trigger: CACCATGTGGGCGGGCACCAACTCGGGCTCTGTGTT...GCTGCCATCCCTCACTCCAGCTGGAACCCTGCAGGCTTCTCTAATGGTGTCATT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp GGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAATTAGCTGCACCTCCTaGCCCAGCACCGCCTCCACT +
Preference number: 5 (lower is better)
Translates to: GPFMTVDPLCLTARGRQLISCTS*PSTAST
Trigger: AGTGGAGGCGGTGCTGGGCAAGGAGGTGCAGCTAAT...TAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 90 bp GGTGGGTGGAAGCTGAGGCCTTCCTCCAGGTGGGCGCAGCCATTATaGTGGATGATCTCCCAGAGATGCAAGCTGCTGTCATCTAGCAGG +
Preference number: 5 (lower is better)
Translates to: GGWKLRPSSRWAQPL*WMISQRCKLLSSSR
Trigger: CCTGCTAGATGACAGCAGCTTGCATCTCTGGGAGATCATCCATCATAATGGCTGCGCCCACCTGGAGGAAGGCCTCAGCTTCCACCCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 90 bp GCTGCCAGTGTCTGTGGACCAGATGGCATAGCTGCCATCACTGTGTaGGCTGATAATGCTGCTGCCATCACGGCCCCAACACAGGCTCTC +
Preference number: 5 (lower is better)
Translates to: AASVCGPDGIAAITV*ADNAAAITAPTQAL
Trigger: GAGAGCCTGTGTTGGGGCCGTGATGGCAGCAGCATTATCAGCTCACACAGTGATGGCAGCTATGCCATCTGGTCCACAGACACTGGCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 90 bp GGTGACATCCCCTGTTGTGTCCAGCATGGTATCCCCACTAGCAGCTaGATCAATGGACACAGGCGAGAGAGCGGCCTCGGGTGGTTCCAT +
Preference number: 5 (lower is better)
Translates to: GDIPCCVQHGIPTSS*INGHRRESGLGWFH
Trigger: ATGGAACCACCCGAGGCCGCTCTCTCGCCTGTGTCCATTGATTCAGCTGCTAGTGGGGATACCATGCTGGACACAACAGGGGATGTCACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp CCGACAAGCATCATCTGCCTCCAGGTTCCGCAGGTTCTTCTCAGAGTCCTCAGGTTGGCCTCCTGCAACTaGCTACTGGCAGCAGGAGTC +
Preference number: 5 (lower is better)
Translates to: PTSIICLQVPQVLLRVLRLASCN*LLAAGV
Trigger: GACTCCTGCTGCCAGTAGCAAGTTGCAGGAGGCCAA...CCTGAGGACTCTGAGAAGAACCTGCGGAACCTGGAGGCAGATGATGCTTGTCGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp GGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGCAGCTAATGGTATCAGCTCGCTaGCTGTGGGCAGAGCTAGGG +
Preference number: 5 (lower is better)
Translates to: GPFMTVDPLCLTARGRQLMVSAR*LWAELG
Trigger: CCCTAGCTCTGCCCACAGCAAGCGAGCTGATACCAT...TAGCTGCCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 90 bp GGCCAGAATGATGTCTCTGGTCCCATTAGCCTGGCTCAGCTTGGGTaGCTCTTGAAGCCTGGGCTGGGTGGCATTTTGGGGCCAGCTTAT +
Preference number: 5 (lower is better)
Translates to: GQNDVSGPISLAQLG*LLKPGLGGILGPAY
Trigger: ATAAGCTGGCCCCAAAATGCCACCCAGCCCAGGCTTCAAGAGTCACCCAAGCTGAGCCAGGCTAATGGGACCAGAGACATCATTCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp TCTGCCCCTCCAGCAGTGCCAGGGTGGCTACATCCAGGAAGAATATaGTACCACTCTCAGTTCCCAGGGCTGCTGTATTGCCAGCTACGA +
Preference number: 5 (lower is better)
Translates to: SAPPAVPGWLHPGRI*YHSQFPGLLYCQLR
Trigger: TCGTAGCTGGCAATACAGCAGCCCTGGGAACTGAGAGTGGTAGCATATTCTTCCTGGATGTAGCCACCCTGGCACTGCTGGAGGGGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp ACTGCGCAGAACCACATCTGGGCTGAGAGTCTGCCCCTCCAGCAGTaGCAGGGTGGCTACATCCAGGAAGAATATGCTACCACTCTCAGT +
Preference number: 5 (lower is better)
Translates to: TAQNHIWAESLPLQQ*QGGYIQEEYATTLS
Trigger: ACTGAGAGTGGTAGCATATTCTTCCTGGATGTAGCCACCCTGGCACTGCTGGAGGGGCAGACTCTCAGCCCAGATGTGGTTCTGCGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp CTGATAATGCTGCTGCCATCACGGCCCCAACACAGGCTCTCCAGCTaGTGGTTACCTAGGAAAACGTTGTCCACAGACTGTGTGGCCTGG +
Preference number: 5 (lower is better)
Translates to: LIMLLPSRPQHRLSS*WLPRKTLSTDCVAW
Trigger: CCAGGCCACACAGTCTGTGGACAACGTTTTCCTAGGTAACCAGCAGCTGGAGAGCCTGTGTTGGGGCCGTGATGGCAGCAGCATTATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 90 bp GCTAAGGCCTGGGGGTTGTCACACTCATCCTCTGGCTGTGTGCTGTaGACCGTGAAGAAGTCAATGACACGAGAGGTGAAGTCCAGGGTC +
Preference number: 5 (lower is better)
Translates to: AKAWGLSHSSSGCVL*TVKKSMTREVKSRV
Trigger: GACCCTGGACTTCACCTCTCGTGTCATTGACTTCTTCACGGTGCACAGCACACAGCCAGAGGATGAGTGTGACAACCCCCAGGCCTTAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp ATAATGCTGCTGCCATCACGGCCCCAACACAGGCTCTCCAGCTGCTaGTTACCTAGGAAAACGTTGTCCACAGACTGTGTGGCCTGGCTC +
Preference number: 5 (lower is better)
Translates to: IMLLPSRPQHRLSSC*LPRKTLSTDCVAWL
Trigger: GAGCCAGGCCACACAGTCTGTGGACAACGTTTTCCTAGGTAACCAGCAGCTGGAGAGCCTGTGTTGGGGCCGTGATGGCAGCAGCATTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AAGCCGAAGGTGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCAGGGAAACTGGCATaGTCAAAACTGGGTCTGCTG +
Preference number: 5 (lower is better)
Translates to: KPKVASTGKPILTAAHTRAGKLA*SKLGLL
Trigger: CAGCAGACCCAGTTTTGACAATGCCAGTTTCCCTGC...ACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCACCTTCGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp CAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGATCTGGGCTGTGTACTaGCAAAGCGCAACCTTCTGG +
Preference number: 5 (lower is better)
Translates to: QARPFHDCGSPMPDSQRKIWAVY*QSATFW
Trigger: CCAGAAGGTTGCGCTTTGCAAGTACACAGCCCAGAT...CTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp CAGCAGTCTCTAGTCACAGGAGCACACAATACACACAGGCCAGGAGCAAGTACCTCGGCCAGCTGGGCATaGGCCTCCTGCAACTTGCTA +
Preference number: 5 (lower is better)
Translates to: QQSLVTGAHNTHRPGASTSASWA*ASCNLL
Trigger: TAGCAAGTTGCAGGAGGCCAATGCCCAGCTGGCCGA...GGTACTTGCTCCTGGCCTGTGTGTATTGTGTGCTCCTGTGACTAGAGACTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AATGACACCATTAGAGAAGCCTGCAGGGTTCCAGCTGGAGTGAGGGATGGCAGCGGGCTGGGTGGCATTTaGGGGCCAGCTTATATCCAG +
Preference number: 5 (lower is better)
Translates to: NDTIREACRVPAGVRDGSGLGGI*GPAYIQ
Trigger: CTGGATATAAGCTGGCCCCAAAATGCCACCCAGCCC...GCTGCCATCCCTCACTCCAGCTGGAACCCTGCAGGCTTCTCTAATGGTGTCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp CCGACAAGCATCATCTGCCTCCAGGTTCCGCAGGTTCTTCTCAGAGTCCTCAGGTGTCTCAGTGACTTCTaGAGGGACTTCACCCGTGAC +
Preference number: 5 (lower is better)
Translates to: PTSIICLQVPQVLLRVLRCLSDF*RDFTRD
Trigger: GTCACGGGTGAAGTCCCTCAAGAAGTCACTGAGACA...CCTGAGGACTCTGAGAAGAACCTGCGGAACCTGGAGGCAGATGATGCTTGTCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp GCTGAGCTTGAGGCTGGGATGTGTTCAGGGCCCAGCATCAGTCAGCGGGTCCGTGGTAGTGTGAACACCTaGAATTGTTCCTCAGATGCA +
Preference number: 5 (lower is better)
Translates to: AELEAGMCSGPSISQRVRGSVNT*NCSSDA
Trigger: TGCATCTGAGGAACAATTCAAGGTGTTCACACTACC...ACGGACCCGCTGACTGATGCTGGGCCCTGAACACATCCCAGCCTCAAGCTCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp CAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGTCTTAGCACTCACCTaGGGTAGTGTGAACACCTTG +
Preference number: 5 (lower is better)
Translates to: QARPFHDCGSPMPDSQRKVLALT*GSVNTL
Trigger: CAAGGTGTTCACACTACCCAAGGTGAGTGCTAAGAC...CTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp AGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGGTCTTAGCACTCACCTaGGGTAGTGTGAACACCTTG +
Preference number: 5 (lower is better)
Translates to: RPGPFMTVDPLCLTARGRVLALT*GSVNTL
Trigger: CAAGGTGTTCACACTACCCAAGGTGAGTGCTAAGAC...CCTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp TGGCATCTACAGGGAAGCCCATCCTCACTGCCGCACACACACGTGCACACACACAGTGGTTCTGTGATGTaGCGAGCACTCAGTGAGAAG +
Preference number: 5 (lower is better)
Translates to: WHLQGSPSSLPHTHVHTHSGSVM*RALSEK
Trigger: CTTCTCACTGAGTGCTCGCAACATCACAGAACCACT...GTGTGTGTGCACGTGTGTGTGCGGCAGTGAGGATGGGCTTCCCTGTAGATGCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 90 bp CAGTTCCCAGGGCTGCTGTATTGCCAGCTACGAGCAGGACCACAGTaGCACGTGTTAGACTGGCAGGGAAACTGGCATTGTCAAAACTGG +
Preference number: 5 (lower is better)
Translates to: QFPGLLYCQLRAGPQ*HVLDWQGNWHCQNW
Trigger: CCAGTTTTGACAATGCCAGTTTCCCTGCCAGTCTAACACGTGTCACTGTGGTCCTGCTCGTAGCTGGCAATACAGCAGCCCTGGGAACTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp CCTTTCAGTGATGGCCCAAGATGGGCTTGCTGGGGAGCTAGGAGGGTACCAAGTAGTGGTTCTGTGATGTaGCGAGCACTCAGTGAGAAG +
Preference number: 5 (lower is better)
Translates to: PFSDGPRWACWGARRVPSSGSVM*RALSEK
Trigger: CTTCTCACTGAGTGCTCGCAACATCACAGAACCACT...ACTTGGTACCCTCCTAGCTCCCCAGCAAGCCCATCTTGGGCCATCACTGAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp GAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAAATACTCTGCTTGAGGAGAGCTAAGGCCTGGGGGTaGTCACACTCATCCTCTGGC +
Preference number: 5 (lower is better)
Translates to: EMTGQLSPGVRKILCLRRAKAWG*SHSSSG
Trigger: GCCAGAGGATGAGTGTGACAACCCCCAGGCCTTAGC...TCTCCTCAAGCAGAGTATTTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp CAGGCCAGGCCCTTTCATGACTGTGGATCCCCTATGCCTGACAGCCAGAGGAAGGGTAGTGTGAACACCTaGAATTGTTCCTCAGATGCA +
Preference number: 5 (lower is better)
Translates to: QARPFHDCGSPMPDSQRKGSVNT*NCSSDA
Trigger: TGCATCTGAGGAACAATTCAAGGTGTTCACACTACC...CTTCCTCTGGCTGTCAGGCATAGGGGATCCACAGTCATGAAAGGGCCTGGCCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 90 bp CTGGCAAATGTAGCCAGGGCTACCTTCCGCACACGACAGCCTTCATaGGCTGTAAGCTTGAATTTAGTCTTAGCACTCACCTTGGGTAGT +
Preference number: 5 (lower is better)
Translates to: LANVARATFRTRQPS*AVSLNLVLALTLGS
Trigger: ACTACCCAAGGTGAGTGCTAAGACTAAATTCAAGCTTACAGCCCATGAAGGCTGTCGTGTGCGGAAGGTAGCCCTGGCTACATTTGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp GAAATGACTGGCCAGCTCAGTCCAGGCGTTAGAAAAATACTCTGCTTGAGGAGATGTCTCAGTGACTTCTaGAGGGACTTCACCCGTGAC +
Preference number: 5 (lower is better)
Translates to: EMTGQLSPGVRKILCLRRCLSDF*RDFTRD
Trigger: GTCACGGGTGAAGTCCCTCAAGAAGTCACTGAGACA...TCTCCTCAAGCAGAGTATTTTTCTAACGCCTGGACTGAGCTGGCCAGTCATTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp TACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGCCAGCTTGTGAACACCTTGAATaGTTCCTCAGATGCAATGAG +
Preference number: 5 (lower is better)
Translates to: YTQARSKYQNCFRNDWPACEHLE*FLRCNE
Trigger: CTCATTGCATCTGAGGAACAATTCAAGGTGTTCACA...AGCTGGCCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS-3UTR CAA 90 bp ACACAATACACACAGGCCAGGAGCAAGTACCAAAACTGCTTTAGAAATGACTGGTGTGAACACCTTGAATaGTTCCTCAGATGCAATGAG +
Preference number: 5 (lower is better)
Translates to: TQYTQARSKYQNCFRNDWCEHLE*FLRCNE
Trigger: CTCATTGCATCTGAGGAACAATTCAAGGTGTTCACA...CCAGTCATTTCTAAAGCAGTTTTGGTACTTGCTCCTGGCCTGTGTGTATTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp GTGCCATCCTCATGGCCAGTGAGCAGCAGCCCACGCTaGGAGGGTTCCTGGGCCAAGTTCCGGCCCCCGGTA +
Preference number: 6 (lower is better)
Translates to: VPSSWPVSSSPR*EGSWAKFRPPV
Trigger: TACCGGGGGCCGGAACTTGGCCCAGGAACCCTCGCAGCGTGGGCTGCTGCTCACTGGCCATGAGGATGGCAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp CCTCCAGCGCATAGGCGAACACAGAGCCCGAGTTGGTaGCCGCCCACATGGTGGGCCCGTGGTGGGTCGCAT +
Preference number: 6 (lower is better)
Translates to: PPAHRRTQSPSW*PPTWWARGGSH
Trigger: ATGCGACCCACCACGGGCCCACCATGTGGGCGGGCACCAACTCGGGCTCTGTGTTCGCCTATGCGCTGGAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp TGGCCAGTGAGCAGCAGCCCACGCTGCGAGGGTTCCTaGGCCAAGTTCCGGCCCCCGGTAATGGGCCAACTC +
Preference number: 6 (lower is better)
Translates to: WPVSSSPRCEGS*AKFRPPVMGQL
Trigger: GAGTTGGCCCATTACCGGGGGCCGGAACTTGGCCCAGGAACCCTCGCAGCGTGGGCTGCTGCTCACTGGCCA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp CTGGAATCCGGCAGGCCACGGCAGCAGCCCCGTGTGTaGGTTCAGCCGCTCGTGACCCTTCCACGTGAAGCC +
Preference number: 6 (lower is better)
Translates to: LESGRPRQQPRV*VQPLVTLPREA
Trigger: GGCTTCACGTGGAAGGGTCACGAGCGGCTGAACCCACACACGGGGCTGCTGCCGTGGCCTGCCGGATTCCAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp GAACCTCCAGCGCATAGGCGAACACAGAGCCCGAGTTaGTGCCCGCCCACATGGTGGGCCCGTGGTGGGTCG +
Preference number: 6 (lower is better)
Translates to: EPPAHRRTQSPS*CPPTWWARGGS
Trigger: CGACCCACCACGGGCCCACCATGTGGGCGGGCACCAACTCGGGCTCTGTGTTCGCCTATGCGCTGGAGGTTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp GGCCAGGTCCCGGGAAGCCTCATAGGGCTCAGGCAGTaGCCGGCCACGACCATCCAGCACAGCAATGGCCAC +
Preference number: 6 (lower is better)
Translates to: GQVPGSLIGLRQ*PATTIQHSNGH
Trigger: GTGGCCATTGCTGTGCTGGATGGTCGTGGCCGGCCACTGCCTGAGCCCTATGAGGCTTCCCGGGACCTGGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp CGCCTCCACTGCCTGCTCAGGCCGCTTCTCTCCGCCTaGTGTGGCTGCTGGAACCTCCAGCGCATAGGCGAA +
Preference number: 6 (lower is better)
Translates to: RLHCLLRPLLSA*CGCWNLQRIGE
Trigger: TTCGCCTATGCGCTGGAGGTTCCAGCAGCCACAGCAGGCGGAGAGAAGCGGCCTGAGCAGGCAGTGGAGGCG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp CCACCACAGGTGCTCGGTGCATTAGCTGCACCTCCTTaGCCAGCACCGCCTCCACTGCCTGCTCAGGCCGCT +
Preference number: 6 (lower is better)
Translates to: PPQVLGALAAPP*PAPPPLPAQAA
Trigger: AGCGGCCTGAGCAGGCAGTGGAGGCGGTGCTGGGCAAGGAGGTGCAGCTAATGCACCGAGCACCTGTGGTGG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp CCAGAGGCGTCCCAGAACCGCACAGTGCCATCCTCATaGCCAGTGAGCAGCAGCCCACGCTGCGAGGGTTCC +
Preference number: 6 (lower is better)
Translates to: PEASQNRTVPSS*PVSSSPRCEGS
Trigger: GGAACCCTCGCAGCGTGGGCTGCTGCTCACTGGCCATGAGGATGGCACTGTGCGGTTCTGGGACGCCTCTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp AATGCGGCGCTGCACGGGTGTCATCTCCAGGTCGTGTaGGCAGGTCTGCTCGGCCAGCTGGGCATTGGCCTC +
Preference number: 6 (lower is better)
Translates to: NAALHGCHLQVV*AGLLGQLGIGL
Trigger: GAGGCCAATGCCCAGCTGGCCGAGCAGACCTGCCCACACGACCTGGAGATGACACCCGTGCAGCGCCGCATT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp AGGCGAACACAGAGCCCGAGTTGGTGCCCGCCCACATaGTGGGCCCGTGGTGGGTCGCATCTCGAAGGAACG +
Preference number: 6 (lower is better)
Translates to: RRTQSPSWCPPT*WARGGSHLEGT
Trigger: CGTTCCTTCGAGATGCGACCCACCACGGGCCCACCATGTGGGCGGGCACCAACTCGGGCTCTGTGTTCGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp TGGAAGGCGAAGAGCTCCTGCTTAAGCTTCTCGCGCTaGGGGTCGGCGCCCTGCCGCCGGAACCGAAACTTC +
Preference number: 6 (lower is better)
Translates to: WKAKSSCLSFSR*GSAPCRRNRNF
Trigger: GAAGTTTCGGTTCCGGCGGCAGGGCGCCGACCCGCAGCGCGAGAAGCTTAAGCAGGAGCTCTTCGCCTTCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp AGCGAGTCGTCAGCAGACCGAGGCTCAATGCGGCGCTaGACGGGTGTCATCTCCAGGTCGTGTGGGCAGGTC +
Preference number: 6 (lower is better)
Translates to: SESSADRGSMRR*TGVISRSCGQV
Trigger: GACCTGCCCACACGACCTGGAGATGACACCCGTGCAGCGCCGCATTGAGCCTCGGTCTGCTGACGACTCGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp CACCGGAGAGCGAGTCGTCAGCAGACCGAGGCTCAATaGGGCGCTGCACGGGTGTCATCTCCAGGTCGTGTG +
Preference number: 6 (lower is better)
Translates to: HRRASRQQTEAQ*GAARVSSPGRV
Trigger: CACACGACCTGGAGATGACACCCGTGCAGCGCCGCATTGAGCCTCGGTCTGCTGACGACTCGCTCTCCGGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp GAGCCCGAGTTGGTGCCCGCCCACATGGTGGGCCCGTaGTGGGTCGCATCTCGAAGGAACGTGTCAGCAAAG +
Preference number: 6 (lower is better)
Translates to: EPELVPAHMVGP*WVASRRNVSAK
Trigger: CTTTGCTGACACGTTCCTTCGAGATGCGACCCACCACGGGCCCACCATGTGGGCGGGCACCAACTCGGGCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp CGAACACAGAGCCCGAGTTGGTGCCCGCCCACATGGTaGGCCCGTGGTGGGTCGCATCTCGAAGGAACGTGT +
Preference number: 6 (lower is better)
Translates to: RTQSPSWCPPTW*ARGGSHLEGTC
Trigger: ACACGTTCCTTCGAGATGCGACCCACCACGGGCCCACCATGTGGGCGGGCACCAACTCGGGCTCTGTGTTCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp CCACTGCCTGCTCAGGCCGCTTCTCTCCGCCTGCTGTaGCTGCTGGAACCTCCAGCGCATAGGCGAACACAG +
Preference number: 6 (lower is better)
Translates to: PLPAQAASLRLL*LLEPPAHRRTQ
Trigger: CTGTGTTCGCCTATGCGCTGGAGGTTCCAGCAGCCACAGCAGGCGGAGAGAAGCGGCCTGAGCAGGCAGTGG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 90 bp ACAGGCGAGAGAGCGGCCTCGGGTGGTTCCATGGTATCAGCTCGCTaGCTGTGGGCAGAGCTAGGGCTTCCTTCGCAGCTCTCTGGGGCC +
Preference number: 6 (lower is better)
Translates to: TGERAASGGSMVSAR*LWAELGLPSQLSGA
Trigger: GGCCCCAGAGAGCTGCGAAGGAAGCCCTAGCTCTGCCCACAGCAAGCGAGCTGATACCATGGAACCACCCGAGGCCGCTCTCTCGCCTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp CCATGCTCCACAGTCTTGTGGAAGGCGAAGAGCTCCTaGTTAAGCTTCTCGCGCTGCGGGTCGGCGCCCTGC +
Preference number: 6 (lower is better)
Translates to: PCSTVLWKAKSS*LSFSRCGSAPC
Trigger: GCAGGGCGCCGACCCGCAGCGCGAGAAGCTTAAGCAGGAGCTCTTCGCCTTCCACAAGACTGTGGAGCATGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp CCATCCAGCACAGCAATGGCCACCACAGGTGCTCGGTaGATTAGCTGCACCTCCTTGCCCAGCACCGCCTCC +
Preference number: 6 (lower is better)
Translates to: PSSTAMATTGAR*ISCTSLPSTAS
Trigger: GGAGGCGGTGCTGGGCAAGGAGGTGCAGCTAATGCACCGAGCACCTGTGGTGGCCATTGCTGTGCTGGATGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp TGTTCCTCAGATGCAATGAGCACAGCATGGCCGCCTTaGATGTCTGGCGCCTGGGCCAGGTCCCGGGAAGCC +
Preference number: 6 (lower is better)
Translates to: CSSDAMSTAWPP*MSGAWARSREA
Trigger: GGCTTCCCGGGACCTGGCCCAGGCGCCAGACATGCAAGGCGGCCATGCTGTGCTCATTGCATCTGAGGAACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp ACCTTGCGGAAGGGCGGCCAGTCATCCTCCACAGCCTaGGCCAGGCTGTCAGCATGTTCACAGTCCGTCTGG +
Preference number: 6 (lower is better)
Translates to: TLRKGGQSSSTA*ARLSACSQSVW
Trigger: CCAGACGGACTGTGAACATGCTGACAGCCTGGCCCAGGCTGTGGAGGATGACTGGCCGCCCTTCCGCAAGGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp CAGGCAGTGGCCGGCCACGACCATCCAGCACAGCAATaGCCACCACAGGTGCTCGGTGCATTAGCTGCACCT +
Preference number: 6 (lower is better)
Translates to: QAVAGHDHPAQQ*PPQVLGALAAP
Trigger: AGGTGCAGCTAATGCACCGAGCACCTGTGGTGGCCATTGCTGTGCTGGATGGTCGTGGCCGGCCACTGCCTG
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp AGATGCAATGAGCACAGCATGGCCGCCTTGCATGTCTaGCGCCTGGGCCAGGTCCCGGGAAGCCTCATAGGG +
Preference number: 6 (lower is better)
Translates to: RCNEHSMAALHV*RLGQVPGSLIG
Trigger: CCCTATGAGGCTTCCCGGGACCTGGCCCAGGCGCCAGACATGCAAGGCGGCCATGCTGTGCTCATTGCATCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 72 bp AGGTCGTGTGGGCAGGTCTGCTCGGCCAGCTGGGCATaGGCCTCCTGCAACTTGCTACTGGCAGCAGGAGTC +
Preference number: 6 (lower is better)
Translates to: RSCGQVCSASWA*ASCNLLLAAGV
Trigger: GACTCCTGCTGCCAGTAGCAAGTTGCAGGAGGCCAATGCCCAGCTGGCCGAGCAGACCTGCCCACACGACCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp GCCGTAGGGTGTGGTCACTACAGTGGGCTGCAGCGTTaGGGGGCTGCCAGTGTCTGTGGACCAGATGGCATA +
Preference number: 6 (lower is better)
Translates to: AVGCGHYSGLQR*GAASVCGPDGI
Trigger: TATGCCATCTGGTCCACAGACACTGGCAGCCCCCCAACGCTGCAGCCCACTGTAGTGACCACACCCTACGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 72 bp TTGTTCCTCAGATGCAATGAGCACAGCATGGCCGCCTaGCATGTCTGGCGCCTGGGCCAGGTCCCGGGAAGC +
Preference number: 6 (lower is better)
Translates to: LFLRCNEHSMAA*HVWRLGQVPGS
Trigger: GCTTCCCGGGACCTGGCCCAGGCGCCAGACATGCAAGGCGGCCATGCTGTGCTCATTGCATCTGAGGAACAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 72 bp AGAGCGGCCTCGGGTGGTTCCATGGTATCAGCTCGCTaGCTGTGGGCAGAGCTAGGGCTTCCTTCGCAGCTC +
Preference number: 6 (lower is better)
Translates to: RAASGGSMVSAR*LWAELGLPSQL
Trigger: GAGCTGCGAAGGAAGCCCTAGCTCTGCCCACAGCAAGCGAGCTGATACCATGGAACCACCCGAGGCCGCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 72 bp GGTCTCCTGACTCACAGCTCCGCCACAGAATCTTGTTaGTGGCCTTGCAGGGGAAGGGGCCGTAGGGTGTGG +
Preference number: 6 (lower is better)
Translates to: GLLTHSSATESC*WPCRGRGRRVW
Trigger: CCACACCCTACGGCCCCTTCCCCTGCAAGGCCATCAACAAGATTCTGTGGCGGAGCTGTGAGTCAGGAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 72 bp CCGTGTGTGGGTTCAGCCGCTCGTGACCCTTCCACGTaGAGCCCTCGCGATCCTGAAGAAGATCCACGTTGG +
Preference number: 6 (lower is better)
Translates to: PCVGSAARDPST*SPRDPEEDPRW
Trigger: CCAACGTGGATCTTCTTCAGGATCGCGAGGGCTTCACGTGGAAGGGTCACGAGCGGCTGAACCCACACACGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp CCGGTAATCATCTGGCACACTGCGCAGAACCACATCTaGGCTGAGAGTCTGCCCCTCCAGCAGTGCCAGGGT +
Preference number: 6 (lower is better)
Translates to: PVIIWHTAQNHI*AESLPLQQCQG
Trigger: ACCCTGGCACTGCTGGAGGGGCAGACTCTCAGCCCAGATGTGGTTCTGCGCAGTGTGCCAGATGATTACCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 72 bp AGCTCCTCCTCCAGAAGCACGGCTAAGGCCTGGGGGTaGTCACACTCATCCTCTGGCTGTGTGCTGTGCACC +
Preference number: 6 (lower is better)
Translates to: SSSSRSTAKAWG*SHSSSGCVLCT
Trigger: GGTGCACAGCACACAGCCAGAGGATGAGTGTGACAACCCCCAGGCCTTAGCCGTGCTTCTGGAGGAGGAGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 90 bp CACCTTGAATTGTTCCTCAGATGCAATGAGCACAGCATGGCCGCCTaGCATGTCTGGCGCCTGGGCCAGGTCCCGGGAAGCCTCATAGGG +
Preference number: 6 (lower is better)
Translates to: HLELFLRCNEHSMAA*HVWRLGQVPGSLIG
Trigger: CCCTATGAGGCTTCCCGGGACCTGGCCCAGGCGCCAGACATGCAAGGCGGCCATGCTGTGCTCATTGCATCTGAGGAACAATTCAAGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 72 bp AATCATCTGGCACACTGCGCAGAACCACATCTGGGCTaGGAGTCTGCCCCTCCAGCAGTGCCAGGGTGGCTA +
Preference number: 6 (lower is better)
Translates to: NHLAHCAEPHLG*ESAPPAVPGWL
Trigger: TAGCCACCCTGGCACTGCTGGAGGGGCAGACTCTCAGCCCAGATGTGGTTCTGCGCAGTGTGCCAGATGATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp CAGGCTGTGGGCTCTGCTGCTCACCAGCACTTACAATaGGGGCCCACAGCTTGCTGGGGACATTGGCAACAT +
Preference number: 6 (lower is better)
Translates to: QAVGSAAHQHLQ*GPTACWGHWQH
Trigger: ATGTTGCCAATGTCCCCAGCAAGCTGTGGGCCCGCATTGTAAGTGCTGGTGAGCAGCAGAGCCCACAGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp ATGCGGGCCCACAGCTTGCTGGGGACATTGGCAACATaGGCAGAGCAGGTGATAGCTGACGAATGCAGTGGG +
Preference number: 6 (lower is better)
Translates to: MRAHSLLGTLAT*AEQVIADECSG
Trigger: CCCACTGCATTCGTCAGCTATCACCTGCTCTGCCCATGTTGCCAATGTCCCCAGCAAGCTGTGGGCCCGCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp GCTGTGGGCAGAGCTAGGGCTTCCTTCGCAGCTCTCTaGGGCCAGAATGATGTCTCTGGTCCCATTAGCCTG +
Preference number: 6 (lower is better)
Translates to: AVGRARASFAAL*GQNDVSGPISL
Trigger: CAGGCTAATGGGACCAGAGACATCATTCTGGCCCCAGAGAGCTGCGAAGGAAGCCCTAGCTCTGCCCACAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 72 bp TGCTGCTCACCAGCACTTACAATGCGGGCCCACAGCTaGCTGGGGACATTGGCAACATGGGCAGAGCAGGTG +
Preference number: 6 (lower is better)
Translates to: CCSPALTMRAHS*LGTLATWAEQV
Trigger: CACCTGCTCTGCCCATGTTGCCAATGTCCCCAGCAAGCTGTGGGCCCGCATTGTAAGTGCTGGTGAGCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 72 bp CCTGCAGTGCCAGCTACCACCATCTGGGCTGTGTACTaGCAAAGCGCAACCTTCTGGATTCCTAGCCGGGGG +
Preference number: 6 (lower is better)
Translates to: PAVPATTIWAVY*QSATFWIPSRG
Trigger: CCCCCGGCTAGGAATCCAGAAGGTTGCGCTTTGCAAGTACACAGCCCAGATGGTGGTAGCTGGCACTGCAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 90 bp TGTGGGCTCTGCTGCTCACCAGCACTTACAATGCGGGCCCACAGCTaGCTGGGGACATTGGCAACATGGGCAGAGCAGGTGATAGCTGAC +
Preference number: 6 (lower is better)
Translates to: CGLCCSPALTMRAHS*LGTLATWAEQVIAD
Trigger: GTCAGCTATCACCTGCTCTGCCCATGTTGCCAATGTCCCCAGCAAGCTGTGGGCCCGCATTGTAAGTGCTGGTGAGCAGCAGAGCCCACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 72 bp GATGTCTCTGGTCCCATTAGCCTGGCTCAGCTTGGGTaGCTCTTGAAGCCTGGGCTGGGTGGCATTTTGGGG +
Preference number: 6 (lower is better)
Translates to: DVSGPISLAQLG*LLKPGLGGILG
Trigger: CCCCAAAATGCCACCCAGCCCAGGCTTCAAGAGTCACCCAAGCTGAGCCAGGCTAATGGGACCAGAGACATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp CTGCAGTGCCAGCTACCACCATCTGGGCTGTGTACTTaGAAAGCGCAACCTTCTGGATTCCTAGCCGGGGGT +
Preference number: 6 (lower is better)
Translates to: LQCQLPPSGLCT*KAQPSGFLAGG
Trigger: ACCCCCGGCTAGGAATCCAGAAGGTTGCGCTTTGCAAGTACACAGCCCAGATGGTGGTAGCTGGCACTGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp CACAGGGCCCAAGGCCTTTCCACACCGGTAATCATCTaGCACACTGCGCAGAACCACATCTGGGCTGAGAGT +
Preference number: 6 (lower is better)
Translates to: HRAQGLSTPVII*HTAQNHIWAES
Trigger: ACTCTCAGCCCAGATGTGGTTCTGCGCAGTGTGCCAGATGATTACCGGTGTGGAAAGGCCTTGGGCCCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp CCTATGAGGATCTTGCTGGGGTCTTGCAGATGTCCCTaGAGTGACTCCACAGGGCCCAAGGCCTTTCCACAC +
Preference number: 6 (lower is better)
Translates to: PMRILLGSCRCP*SDSTGPKAFPH
Trigger: GTGTGGAAAGGCCTTGGGCCCTGTGGAGTCACTCCAGGGACATCTGCAAGACCCCAGCAAGATCCTCATAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 90 bp AGCAGGACCACAGTGACACGTGTTAGACTGGCAGGGAAACTGGCATaGTCAAAACTGGGTCTGCTGGGTGGGTGGAAGCTGAGGCCTTCC +
Preference number: 6 (lower is better)
Translates to: SRTTVTRVRLAGKLA*SKLGLLGGWKLRPS
Trigger: GGAAGGCCTCAGCTTCCACCCACCCAGCAGACCCAGTTTTGACAATGCCAGTTTCCCTGCCAGTCTAACACGTGTCACTGTGGTCCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 90 bp GCATTGGCCTCCTGCAACTTGCTACTGGCAGCAGGAGTCCGTTTTTaGCCTGAGACACGGCTCTTGCGGATTCGCCGGAATGACTGTCTC +
Preference number: 6 (lower is better)
Translates to: ALASCNLLLAAGVRF*PETRLLRIRRNDCL
Trigger: GAGACAGTCATTCCGGCGAATCCGCAAGAGCCGTGTCTCAGGCAAAAAACGGACTCCTGCTGCCAGTAGCAAGTTGCAGGAGGCCAATGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp CTGCTGCCATCACGGCCCCAACACAGGCTCTCCAGCTaGTGGTTACCTAGGAAAACGTTGTCCACAGACTGT +
Preference number: 6 (lower is better)
Translates to: LLPSRPQHRLSS*WLPRKTLSTDC
Trigger: ACAGTCTGTGGACAACGTTTTCCTAGGTAACCAGCAGCTGGAGAGCCTGTGTTGGGGCCGTGATGGCAGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp GACACGAGAGGTGAAGTCCAGGGTCACCAGTGTCTCTaGTCGCAGTACACTCACACAGTGGCGGTCACCATA +
Preference number: 6 (lower is better)
Translates to: DTRGEVQGHQCL*SQYTHTVAVTI
Trigger: TATGGTGACCGCCACTGTGTGAGTGTACTGCGAGCAGAGACACTGGTGACCCTGGACTTCACCTCTCGTGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp CTGCCATCACGGCCCCAACACAGGCTCTCCAGCTGCTaGTTACCTAGGAAAACGTTGTCCACAGACTGTGTG +
Preference number: 6 (lower is better)
Translates to: LPSRPQHRLSSC*LPRKTLSTDCV
Trigger: CACACAGTCTGTGGACAACGTTTTCCTAGGTAACCAGCAGCTGGAGAGCCTGTGTTGGGGCCGTGATGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 72 bp GGCCTTCCTCCAGGTGGGCGCAGCCATTATGATGGATaGTCTCCCAGAGATGCAAGCTGCTGTCATCTAGCA +
Preference number: 6 (lower is better)
Translates to: GLPPGGRSHYDG*SPRDASCCHLA
Trigger: TGCTAGATGACAGCAGCTTGCATCTCTGGGAGATCATCCATCATAATGGCTGCGCCCACCTGGAGGAAGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 72 bp AAGCTGAGGCCTTCCTCCAGGTGGGCGCAGCCATTATaGTGGATGATCTCCCAGAGATGCAAGCTGCTGTCA +
Preference number: 6 (lower is better)
Translates to: KLRPSSRWAQPL*WMISQRCKLLS
Trigger: TGACAGCAGCTTGCATCTCTGGGAGATCATCCATCATAATGGCTGCGCCCACCTGGAGGAAGGCCTCAGCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS TCA 72 bp GTCTGTGGACCAGATGGCATAGCTGCCATCACTGTGTaGGCTGATAATGCTGCTGCCATCACGGCCCCAACA +
Preference number: 6 (lower is better)
Translates to: VCGPDGIAAITV*ADNAAAITAPT
Trigger: TGTTGGGGCCGTGATGGCAGCAGCATTATCAGCTCACACAGTGATGGCAGCTATGCCATCTGGTCCACAGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 72 bp TCCTGCAACTTGCTACTGGCAGCAGGAGTCCGTTTTTaGCCTGAGACACGGCTCTTGCGGATTCGCCGGAAT +
Preference number: 6 (lower is better)
Translates to: SCNLLLAAGVRF*PETRLLRIRRN
Trigger: ATTCCGGCGAATCCGCAAGAGCCGTGTCTCAGGCAAAAAACGGACTCCTGCTGCCAGTAGCAAGTTGCAGGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp CAGGAAGAATATGCTACCACTCTCAGTTCCCAGGGCTaGTGTATTGCCAGCTACGAGCAGGACCACAGTGAC +
Preference number: 6 (lower is better)
Translates to: QEEYATTLSSQG*CIASYEQDHSD
Trigger: GTCACTGTGGTCCTGCTCGTAGCTGGCAATACAGCAGCCCTGGGAACTGAGAGTGGTAGCATATTCTTCCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS GCA 72 bp TGGGGGTTGTCACACTCATCCTCTGGCTGTGTGCTGTaGACCGTGAAGAAGTCAATGACACGAGAGGTGAAG +
Preference number: 6 (lower is better)
Translates to: WGLSHSSSGCVL*TVKKSMTREVK
Trigger: CTTCACCTCTCGTGTCATTGACTTCTTCACGGTGCACAGCACACAGCCAGAGGATGAGTGTGACAACCCCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp GGCTCAGCTTGGGTGACTCTTGAAGCCTGGGCTGGGTaGCATTTTGGGGCCAGCTTATATCCAGAGAACATA +
Preference number: 6 (lower is better)
Translates to: GSAWVTLEAWAG*HFGASLYPENI
Trigger: TATGTTCTCTGGATATAAGCTGGCCCCAAAATGCCACCCAGCCCAGGCTTCAAGAGTCACCCAAGCTGAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 90 bp TCCAGGAAGAATATGCTACCACTCTCAGTTCCCAGGGCTGCTGTATaGCCAGCTACGAGCAGGACCACAGTGACACGTGTTAGACTGGCA +
Preference number: 6 (lower is better)
Translates to: SRKNMLPLSVPRAAV*PATSRTTVTRVRLA
Trigger: TGCCAGTCTAACACGTGTCACTGTGGTCCTGCTCGTAGCTGGCAATACAGCAGCCCTGGGAACTGAGAGTGGTAGCATATTCTTCCTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CCA 72 bp GTAGCCAGGGCTACCTTCCGCACACGACAGCCTTCATaGGCTGTAAGCTTGAATTTAGTCTTAGCACTCACC +
Preference number: 6 (lower is better)
Translates to: VARATFRTRQPS*AVSLNLVLALT
Trigger: GGTGAGTGCTAAGACTAAATTCAAGCTTACAGCCCATGAAGGCTGTCGTGTGCGGAAGGTAGCCCTGGCTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 72 bp AATATGCTACCACTCTCAGTTCCCAGGGCTGCTGTATaGCCAGCTACGAGCAGGACCACAGTGACACGTGTT +
Preference number: 6 (lower is better)
Translates to: NMLPLSVPRAAV*PATSRTTVTRV
Trigger: AACACGTGTCACTGTGGTCCTGCTCGTAGCTGGCAATACAGCAGCCCTGGGAACTGAGAGTGGTAGCATATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 72 bp CAGCTTATATCCAGAGAACATAGTGGTTCTGTGATGTaGCGAGCACTCAGTGAGAAGCGCTCAAATTCCGAT +
Preference number: 6 (lower is better)
Translates to: QLISREHSGSVM*RALSEKRSNSD
Trigger: ATCGGAATTTGAGCGCTTCTCACTGAGTGCTCGCAACATCACAGAACCACTATGTTCTCTGGATATAAGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4
CDS CAA 72 bp TGGGCTGTAAGCTTGAATTTAGTCTTAGCACTCACCTaGGGTAGTGTGAACACCTTGAATTGTTCCTCAGAT +
Preference number: 6 (lower is better)
Translates to: WAVSLNLVLALT*GSVNTLNCSSD
Trigger: ATCTGAGGAACAATTCAAGGTGTTCACACTACCCAAGGTGAGTGCTAAGACTAAATTCAAGCTTACAGCCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052346.10
ENSMUST00000108719.4