Pregenerated sensors for LLCFC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029867Ensembl transcript IDs: ENSMUST00000031900.6
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTTAAGAGAGAAGGGTGTGGGTTTGGTGTCTTTGGCCCCGGGACATaGAATTCTGGGTTGGGGTGGCAATTAGGTGGTGGATATGAGAGT | + |
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Preference number: 1 (lower is better) Translates to: LKREGCGFGVFGPGT*NSGLGWQLGGGYES Trigger: ACTCTCATATCCACCACCTAATTGCCACCCCAACCCAGAATTTCATGTCCCGGGGCCAAAGACACCAAACCCACACCCTTCTCTCTTAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| 3UTR-3UTR TCA 90 bp | GAGAAGGGTGTGGGTTTGGTGTCTTTGGCCCCGGGACATGAAATTCTGGGTTGGATTAGGTGGTGGATATaGGAGTTGGGAAAGCTCTGT | + |
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Preference number: 2 (lower is better) Translates to: EKGVGLVSLAPGHEILGWIRWWI*ELGKLC Trigger: ACAGAGCTTTCCCAACTCTCATATCCACCACCTAAT...CCAACCCAGAATTTCATGTCCCGGGGCCAAAGACACCAAACCCACACCCTTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| 3UTR-3UTR CAA 90 bp | CAGACAAAGCTTAAGAGAGAAGGGTGTGGGTTTGGTGTCTTTGGCCCCGGGACAACCAGGGTGTGCATTTaGAGGAGGCATTTAGGAGAG | + |
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Preference number: 3 (lower is better) Translates to: QTKLKREGCGFGVFGPGTTRVCI*RRHLGE Trigger: CTCTCCTAAATGCCTCCTCAAAATGCACACCCTGGT...TGTCCCGGGGCCAAAGACACCAAACCCACACCCTTCTCTCTTAAGCTTTGTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| 3UTR TCA 72 bp | GCAATCAGGAAGGGGAGGTGGATGTCTAAGTCCTCATaGAGGATCCAGACTACTGCCTCCACCTCAAAGTCT | + |
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Preference number: 3 (lower is better) Translates to: AIRKGRWMSKSS*RIQTTASTSKS Trigger: AGACTTTGAGGTGGAGGCAGTAGTCTGGATCCTTCATGAGGACTTAGACATCCACCTCCCCTTCCTGATTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS-3UTR CCA 90 bp | GAGAAGGGTGTGGGTTTGGTGTCTTTGGCCCCGGGACATGAAATTCTGGGTTGGTCAAGGAGGTGGTCCTaGAGAGTTATTGCCTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: EKGVGLVSLAPGHEILGWSRRWS*RVIAWE Trigger: CTCCCAGGCAATAACTCTCCAGGACCACCTCCTTGA...CCAACCCAGAATTTCATGTCCCGGGGCCAAAGACACCAAACCCACACCCTTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| 3UTR CAA 72 bp | CAAAGCTTAAGAGAGAAGGGTGTGGGTTTGGTGTCTTaGGCCCCGGGACATGAAATTCTGGGTTGGGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: QSLREKGVGLVS*APGHEILGWGG Trigger: GCCACCCCAACCCAGAATTTCATGTCCCGGGGCCAAAGACACCAAACCCACACCCTTCTCTCTTAAGCTTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS-3UTR CCA 90 bp | GAGAAGGGTGTGGGTTTGGTGTCTTTGGCCCCGGGACATGAAATTCTGGGTTGGTACTCCTCCTCACCCTaGTCTTCAGAGGACACTTTG | + |
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Preference number: 4 (lower is better) Translates to: EKGVGLVSLAPGHEILGWYSSSP*SSEDTL Trigger: CAAAGTGTCCTCTGAAGACCAGGGTGAGGAGGAGTA...CCAACCCAGAATTTCATGTCCCGGGGCCAAAGACACCAAACCCACACCCTTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS-3UTR GCA 90 bp | AATTCTGGGTTGGGGTGGCAATTAGGTGGTGGATATGAGAGTTGGGAAAGCTCTAGCTGTCAGGAATGTTaGTCTGTGGAGCTGGGAGCC | + |
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Preference number: 4 (lower is better) Translates to: NSGLGWQLGGGYESWESSSCQEC*SVELGA Trigger: GGCTCCCAGCTCCACAGAGCAACATTCCTGACAGCT...AGAGCTTTCCCAACTCTCATATCCACCACCTAATTGCCACCCCAACCCAGAATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS-3UTR CCA 90 bp | GAGAAGGGTGTGGGTTTGGTGTCTTTGGCCCCGGGACATGAAATTCTGGGTTGGATCGTGTCTTCTTGCTaGACCATATCTATCTCCTGC | + |
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Preference number: 4 (lower is better) Translates to: EKGVGLVSLAPGHEILGWIVSSC*TISISC Trigger: GCAGGAGATAGATATGGTCCAGCAAGAAGACACGAT...CCAACCCAGAATTTCATGTCCCGGGGCCAAAGACACCAAACCCACACCCTTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS-3UTR GCA 90 bp | AATTCTGGGTTGGGGTGGCAATTAGGTGGTGGATATGAGAGTTGGGAAAGCTCTTCTATCTCCTGCCACTaGTCACCCTCTGATGAAGCC | + |
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Preference number: 4 (lower is better) Translates to: NSGLGWQLGGGYESWESSSISCH*SPSDEA Trigger: GGCTTCATCAGAGGGTGAGCAGTGGCAGGAGATAGA...AGAGCTTTCCCAACTCTCATATCCACCACCTAATTGCCACCCCAACCCAGAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS-3UTR GCA 90 bp | TTAAGAGAGAAGGGTGTGGGTTTGGTGTCTTTGGCCCCGGGACATGAAATTCTGACCATATCTATCTCCTaGCACTGCTCACCCTCTGAT | + |
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Preference number: 4 (lower is better) Translates to: LREKGVGLVSLAPGHEILTISIS*HCSPSD Trigger: ATCAGAGGGTGAGCAGTGGCAGGAGATAGATATGGT...CAGAATTTCATGTCCCGGGGCCAAAGACACCAAACCCACACCCTTCTCTCTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| 3UTR CAA 72 bp | TGTTTCAGACAAAGCTTAAGAGAGAAGGGTGTGGGTTaGGTGTCTTTGGCCCCGGGACATGAAATTCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: CFRQSLREKGVG*VSLAPGHEILG Trigger: ACCCAGAATTTCATGTCCCGGGGCCAAAGACACCAAACCCACACCCTTCTCTCTTAAGCTTTGTCTGAAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS-3UTR CCA 90 bp | TTGGGGTGGCAATTAGGTGGTGGATATGAGAGTTGGGAAAGCTCTGTTGATATATTCACCCCCTTCACTTaGAGCAGCAGCAGTAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: LGWQLGGGYESWESSVDIFTPFT*SSSSSN Trigger: GTTGCTACTGCTGCTGCTCCAAGTGAAGGGGGTGAA...TATATCAACAGAGCTTTCCCAACTCTCATATCCACCACCTAATTGCCACCCCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS-3UTR TCA 90 bp | ATTGCTACTTTATTGTCACTCTCTCCTCCCTGTTTCAGACAAAGCTTAAGAGAGGACACTTTGTCTTTCTaGCTCTTGTCACCATCCAAG | + |
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Preference number: 4 (lower is better) Translates to: IATLLSLSPPCFRQSLREDTLSF*LLSPSK Trigger: CTTGGATGGTGACAAGAGTCAGAAAGACAAAGTGTC...CTCTCTTAAGCTTTGTCTGAAACAGGGAGGAGAGAGTGACAATAAAGTAGCAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS CCA 90 bp | CCATCCAAGCTTGCACTCACTATCAGAGTCTTCACCCCCTTCACTTaGAGCAGCAGCAGTAGCAACAAAGCTGTCAGGAATGTTGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: PSKLALTIRVFTPFT*SSSSSNKAVRNVAL Trigger: CAGAGCAACATTCCTGACAGCTTTGTTGCTACTGCTGCTGCTCCAAGTGAAGGGGGTGAAGACTCTGATAGTGAGTGCAAGCTTGGATGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS-3UTR CAA 90 bp | GTGGTGGATATGAGAGTTGGGAAAGCTCTGTTGATATACCCTAAGGTCAGGTACAAGCTGTCAGGAATGTaGCTCTGTGGAGCTGGGAGC | + |
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Preference number: 5 (lower is better) Translates to: VVDMRVGKALLIYPKVRYKLSGM*LCGAGS Trigger: GCTCCCAGCTCCACAGAGCAACATTCCTGACAGCTT...GTACCTGACCTTAGGGTATATCAACAGAGCTTTCCCAACTCTCATATCCACCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS GCA 90 bp | TTCAGAGGACACTTTGTCTTTCTGACTCTTGTCACCATCCAAGCTTaGACTCACTATCAGAGTCTTCACCCCCTTCACTTGGAGCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: FRGHFVFLTLVTIQA*THYQSLHPLHLEQQ Trigger: CTGCTGCTCCAAGTGAAGGGGGTGAAGACTCTGATAGTGAGTGCAAGCTTGGATGGTGACAAGAGTCAGAAAGACAAAGTGTCCTCTGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS TCA 90 bp | TCATACTCCTCCTCACCCTGGTCTTCAGAGGACACTTTGTCTTTCTaGCTCTTGTCACCATCCAAGCTTGCACTCACTATCAGAGTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SYSSSPWSSEDTLSF*LLSPSKLALTIRVF Trigger: GAAGACTCTGATAGTGAGTGCAAGCTTGGATGGTGACAAGAGTCAGAAAGACAAAGTGTCCTCTGAAGACCAGGGTGAGGAGGAGTATGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS-3UTR CAA 90 bp | ATTGCTACTTTATTGTCACTCTCTCCTCCCTGTTTCAGACAAAGCTTAAGAGAGATGATGCTGGCCAGGTaGAAGCAGAAGGCTAGGTCA | + |
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Preference number: 5 (lower is better) Translates to: IATLLSLSPPCFRQSLREMMLAR*KQKARS Trigger: TGACCTAGCCTTCTGCTTCAACCTGGCCAGCATCAT...CTCTCTTAAGCTTTGTCTGAAACAGGGAGGAGAGAGTGACAATAAAGTAGCAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS CCA 72 bp | AGGTTGAAGCAGAAGGCTAGGTCAAGGAGGTGGTCCTaGAGAGTTATTGCCTGGGAGATCGTGTCTTCTTGC | + |
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Preference number: 6 (lower is better) Translates to: RLKQKARSRRWS*RVIAWEIVSSC Trigger: GCAAGAAGACACGATCTCCCAGGCAATAACTCTCCAGGACCACCTCCTTGACCTAGCCTTCTGCTTCAACCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS GCA 72 bp | GAGATCGTGTCTTCTTGCTGGACCATATCTATCTCCTaGCACTGCTCACCCTCTGATGAAGCCTCAAAGTGT | + |
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Preference number: 6 (lower is better) Translates to: EIVSSCWTISIS*HCSPSDEASKC Trigger: ACACTTTGAGGCTTCATCAGAGGGTGAGCAGTGGCAGGAGATAGATATGGTCCAGCAAGAAGACACGATCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS CCA 72 bp | CTTGCACTCACTATCAGAGTCTTCACCCCCTTCACTTaGAGCAGCAGCAGTAGCAACAAAGCTGTCAGGAAT | + |
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Preference number: 6 (lower is better) Translates to: LALTIRVFTPFT*SSSSSNKAVRN Trigger: ATTCCTGACAGCTTTGTTGCTACTGCTGCTGCTCCAAGTGAAGGGGGTGAAGACTCTGATAGTGAGTGCAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS CAA 90 bp | CTTCAGAGGACACTTTGTCTTTCTGACTCTTGTCACCATCCAAGCTaGCACTCACTATCAGAGTCTTCACCCCCTTCACTTGGAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: LQRTLCLSDSCHHPS*HSLSESSPPSLGAA Trigger: TGCTGCTCCAAGTGAAGGGGGTGAAGACTCTGATAGTGAGTGCAAGCTTGGATGGTGACAAGAGTCAGAAAGACAAAGTGTCCTCTGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS TCA 72 bp | TCCTCACCCTGGTCTTCAGAGGACACTTTGTCTTTCTaGCTCTTGTCACCATCCAAGCTTGCACTCACTATC | + |
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Preference number: 6 (lower is better) Translates to: SSPWSSEDTLSF*LLSPSKLALTI Trigger: GATAGTGAGTGCAAGCTTGGATGGTGACAAGAGTCAGAAAGACAAAGTGTCCTCTGAAGACCAGGGTGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS GCA 72 bp | GTGTCTTCTTGCTGGACCATATCTATCTCCTGCCACTaGTCACCCTCTGATGAAGCCTCAAAGTGTTCTTCA | + |
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Preference number: 6 (lower is better) Translates to: VSSCWTISISCH*SPSDEASKCSS Trigger: TGAAGAACACTTTGAGGCTTCATCAGAGGGTGAGCAGTGGCAGGAGATAGATATGGTCCAGCAAGAAGACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS GCA 72 bp | CACTTTGTCTTTCTGACTCTTGTCACCATCCAAGCTTaGACTCACTATCAGAGTCTTCACCCCCTTCACTTG | + |
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Preference number: 6 (lower is better) Translates to: HFVFLTLVTIQA*THYQSLHPLHL Trigger: CAAGTGAAGGGGGTGAAGACTCTGATAGTGAGTGCAAGCTTGGATGGTGACAAGAGTCAGAAAGACAAAGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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| CDS CAA 72 bp | ACACTTTGTCTTTCTGACTCTTGTCACCATCCAAGCTaGCACTCACTATCAGAGTCTTCACCCCCTTCACTT | + |
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Preference number: 6 (lower is better) Translates to: TLCLSDSCHHPS*HSLSESSPPSL Trigger: AAGTGAAGGGGGTGAAGACTCTGATAGTGAGTGCAAGCTTGGATGGTGACAAGAGTCAGAAAGACAAAGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031900.6 |
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