Pregenerated sensors for LKAAEAR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045794Ensembl transcript IDs: ENSMUST00000052416.4, ENSMUST00000132409.2
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 72 bp | CCTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTaGTGTAACCGTAGGGTCTCTGAACGCCAAGGTCTC | + |
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Preference number: 3 (lower is better) Translates to: PWKRTLYERVGS*CNRRVSERQGL Trigger: GAGACCTTGGCGTTCAGAGACCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052416.4 ENSMUST00000132409.2 |
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| CDS-3UTR CCA 90 bp | CCTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGGTCACAGTTCCAGTCGGATaGCAGCGCGCGCGGAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: PWKRTLYERVGSCCNRRVTVPVG*QRARSS Trigger: AGAGCTCCGCGCGCGCTGCCATCCGACTGGAACTGT...GACCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052416.4 ENSMUST00000132409.2 |
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| CDS-3UTR GCA 90 bp | CCTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGGTCCCTCTGCTTAGTCAATaGCCAGCCTGTCTTCGGAGG | + |
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Preference number: 4 (lower is better) Translates to: PWKRTLYERVGSCCNRRVPLLSQ*PACLRR Trigger: CCTCCGAAGACAGGCTGGGCATTGACTAAGCAGAGG...GACCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS-3UTR CCA 90 bp | ACCCTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGGGATCAGGGATCTTTGTaGGCTTCAGTTGGGGTGGTA | + |
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Preference number: 4 (lower is better) Translates to: TLGRELYMRGWGAAVTVGDQGSL*ASVGVV Trigger: TACCACCCCAACTGAAGCCCACAAAGATCCCTGATC...CCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS-3UTR CCA 90 bp | CCTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGGTCGATCAGGGATCTTTGTaGGCTTCAGTTGGGGTGGTA | + |
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Preference number: 4 (lower is better) Translates to: PWKRTLYERVGSCCNRRVDQGSL*ASVGVV Trigger: TACCACCCCAACTGAAGCCCACAAAGATCCCTGATC...GACCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052416.4 ENSMUST00000132409.2 |
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| CDS-3UTR GCA 90 bp | CTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGGTCTATCGGGGGAAGATGTTaGCATCTACCTCCTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: LGRELYMRGWGAAVTVGSIGGRC*HLPPLP Trigger: TGGAAGAGGAGGTAGATGGCAACATCTTCCCCCGAT...AGACCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052416.4 ENSMUST00000132409.2 |
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| CDS-3UTR CCA 90 bp | CTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGGTCTGCGGAGCTCTGCTTCTaGATCAGCAAAGAGATTTCC | + |
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Preference number: 4 (lower is better) Translates to: LGRELYMRGWGAAVTVGSAELCF*ISKEIS Trigger: GGAAATCTCTTTGCTGATCCAGAAGCAGAGCTCCGC...AGACCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS-3UTR CCA 90 bp | CTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGGTCTTTTGTGGGCTTCAGTTaGGGTGGTAGGAACAGTTCC | + |
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Preference number: 4 (lower is better) Translates to: LGRELYMRGWGAAVTVGSFVGFS*GGRNSS Trigger: GGAACTGTTCCTACCACCCCAACTGAAGCCCACAAA...AGACCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052416.4 ENSMUST00000132409.2 |
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| CDS-3UTR TCA 90 bp | CCTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGGTCCCCAGAAACCGATTTTaGTGCTCAGATGGTAGATTT | + |
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Preference number: 4 (lower is better) Translates to: PWKRTLYERVGSCCNRRVPRNRF*CSDGRF Trigger: AAATCTACCATCTGAGCATCAAAATCGGTTTCTGGG...GACCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000052416.4 ENSMUST00000132409.2 |
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| CDS CCA 90 bp | CGCTCGTGTCGGTCCAGAGGATCAGGGATCTTTGTGGGCTTCAGTTaGGGTGGTAGGAACAGTTCCAGTCGGATGGCAGCGCGCGCGGAG | + |
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Preference number: 5 (lower is better) Translates to: RSCRSRGSGIFVGFS*GGRNSSSRMAARAE Trigger: CTCCGCGCGCGCTGCCATCCGACTGGAACTGTTCCTACCACCCCAACTGAAGCCCACAAAGATCCCTGATCCTCTGGACCGACACGAGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS CCA 90 bp | GGCTCGTGTCGGTCCAGAGGATCAGGGATCTTTGTGGGCTTCAGTTaGGGTGGTAGGAACAGTTCCAGTCGGATGGCAGCGCGCGCGGAG | + |
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Preference number: 5 (lower is better) Translates to: GSCRSRGSGIFVGFS*GGRNSSSRMAARAE Trigger: CTCCGCGCGCGCTGCCATCCGACTGGAACTGTTCCTACCACCCCAACTGAAGCCCACAAAGATCCCTGATCCTCTGGACCGACACGAGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000132409.2 |
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| CDS CCA 90 bp | TCTTTGTGGGCTTCAGTTGGGGTGGTAGGAACAGTTCCAGTCGGATaGCAGCGCGCGCGGAGCTCTGCTTCCGCATTCGGGTGTAGCGCA | + |
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Preference number: 5 (lower is better) Translates to: SLWASVGVVGTVPVG*QRARSSASAFGCSA Trigger: TGCGCTACACCCGAATGCGGAAGCAGAGCTCCGCGCGCGCTGCCATCCGACTGGAACTGTTCCTACCACCCCAACTGAAGCCCACAAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132409.2 |
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| CDS CCA 90 bp | TCTTTGTGGGCTTCAGTTGGGGTGGTAGGAACAGTTCCAGTCGGATaGCAGCGCGCGCGGAGCTCTGCTTCTGGATCAGCAAAGAGATTT | + |
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Preference number: 5 (lower is better) Translates to: SLWASVGVVGTVPVG*QRARSSASGSAKRF Trigger: AAATCTCTTTGCTGATCCAGAAGCAGAGCTCCGCGCGCGCTGCCATCCGACTGGAACTGTTCCTACCACCCCAACTGAAGCCCACAAAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS-3UTR CAA 90 bp | CCTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGGTCCCTCCTCTTCCAGGATaGTCTCAACACGCCTCCGCT | + |
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Preference number: 5 (lower is better) Translates to: PWKRTLYERVGSCCNRRVPPLPG*SQHASA Trigger: AGCGGAGGCGTGTTGAGACAATCCTGGAAGAGGAGG...GACCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000052416.4 ENSMUST00000132409.2 |
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| CDS-3UTR CAA 90 bp | ACCCTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGGGAGGATCAGGGATCTTaGTGGGCTTCAGTTGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: TLGRELYMRGWGAAVTVGEDQGS*WASVGV Trigger: CACCCCAACTGAAGCCCACAAAGATCCCTGATCCTC...CCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS-3UTR CAA 90 bp | CCTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGGTCGAGGATCAGGGATCTTaGTGGGCTTCAGTTGGGGTG | + |
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Preference number: 5 (lower is better) Translates to: PWKRTLYERVGSCCNRRVEDQGS*WASVGV Trigger: CACCCCAACTGAAGCCCACAAAGATCCCTGATCCTC...GACCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000052416.4 ENSMUST00000132409.2 |
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| CDS-3UTR CAA 90 bp | AACCCTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGCCTCCTCTTCCAGGATaGTCTCAACACGCCTCCGCT | + |
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Preference number: 5 (lower is better) Translates to: NPWKRTLYERVGSCCNRRPPLPG*SQHASA Trigger: AGCGGAGGCGTGTTGAGACAATCCTGGAAGAGGAGG...CCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAGGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS-3UTR CAA 90 bp | CTTGGAAGAGAACTTTATATGAGAGGGTGGGGAGCTGCTGTAACCGTAGGGTCTCATCGGGGGAAGATGTaGCCATCTACCTCCTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: LGRELYMRGWGAAVTVGSHRGKM*PSTSSS Trigger: GGAAGAGGAGGTAGATGGCAACATCTTCCCCCGATG...AGACCCTACGGTTACAGCAGCTCCCCACCCTCTCATATAAAGTTCTCTTCCAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000052416.4 ENSMUST00000132409.2 |
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| CDS CCA 72 bp | TCCAGTCGGATGGCAGCGCGCGCGGAGCTCTGCTTCTaGATCAGCAAAGAGATTTCCTCTGCCCGCATTCGG | + |
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Preference number: 6 (lower is better) Translates to: SSRMAARAELCF*ISKEISSARIR Trigger: CCGAATGCGGGCAGAGGAAATCTCTTTGCTGATCCAGAAGCAGAGCTCCGCGCGCGCTGCCATCCGACTGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS CCA 72 bp | GCTTCAGTTGGGGTGGTAGGAACAGTTCCAGTCGGATaGCAGCGCGCGCGGAGCTCTGCTTCTGGATCAGCA | + |
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Preference number: 6 (lower is better) Translates to: ASVGVVGTVPVG*QRARSSASGSA Trigger: TGCTGATCCAGAAGCAGAGCTCCGCGCGCGCTGCCATCCGACTGGAACTGTTCCTACCACCCCAACTGAAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS CAA 72 bp | GCTCCAGCTCCAGCTCCAGCTCCAGATGCACTGTTTTaGTCCCGCTCCCGTGCACCCTTTACTCCCAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: APAPAPAPDALF*SRSRAPFTPRV Trigger: GACCCTGGGAGTAAAGGGTGCACGGGAGCGGGACAAAAACAGTGCATCTGGAGCTGGAGCTGGAGCTGGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS CAA 90 bp | TCTCAACACGCCTCCGCTCGTGTCGGTCCAGAGGATCAGGGATCTTaGTGGGCTTCAGTTGGGGTGGTAGGAACAGTTCCAGTCGGATGG | + |
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Preference number: 6 (lower is better) Translates to: SQHASARVGPEDQGS*WASVGVVGTVPVGW Trigger: CCATCCGACTGGAACTGTTCCTACCACCCCAACTGAAGCCCACAAAGATCCCTGATCCTCTGGACCGACACGAGCGGAGGCGTGTTGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS CAA 90 bp | GCTGCAGAGAGAGAGGCTCGTGTCGGTCCAGAGGATCAGGGATCTTaGTGGGCTTCAGTTGGGGTGGTAGGAACAGTTCCAGTCGGATGG | + |
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Preference number: 6 (lower is better) Translates to: AAEREARVGPEDQGS*WASVGVVGTVPVGW Trigger: CCATCCGACTGGAACTGTTCCTACCACCCCAACTGAAGCCCACAAAGATCCCTGATCCTCTGGACCGACACGAGCCTCTCTCTCTGCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132409.2 |
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| CDS GCA 72 bp | TGTAGGGGACAAGGCTACCAGCCTCTGCTTAGTCAATaGCCAGCCTGTCTTCGGAGGGTCTGTAGTCCTCGG | + |
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Preference number: 6 (lower is better) Translates to: CRGQGYQPLLSQ*PACLRRVCSPR Trigger: CCGAGGACTACAGACCCTCCGAAGACAGGCTGGGCATTGACTAAGCAGAGGCTGGTAGCCTTGTCCCCTACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS CAA 72 bp | GCCTCCGCTCGTGTCGGTCCAGAGGATCAGGGATCTTaGTGGGCTTCAGTTGGGGTGGTAGGAACAGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: ASARVGPEDQGS*WASVGVVGTVP Trigger: TGGAACTGTTCCTACCACCCCAACTGAAGCCCACAAAGATCCCTGATCCTCTGGACCGACACGAGCGGAGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS CAA 72 bp | GGGGGAAGATGTTGCCATCTACCTCCTCTTCCAGGATaGTCTCAACACGCCTCCGCTCGTGTCGGTCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: GGRCCHLPPLPG*SQHASARVGPE Trigger: CTCTGGACCGACACGAGCGGAGGCGTGTTGAGACAATCCTGGAAGAGGAGGTAGATGGCAACATCTTCCCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000052416.4 |
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| CDS CAA 72 bp | AGAGAGGCTCGTGTCGGTCCAGAGGATCAGGGATCTTaGTGGGCTTCAGTTGGGGTGGTAGGAACAGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: REARVGPEDQGS*WASVGVVGTVP Trigger: TGGAACTGTTCCTACCACCCCAACTGAAGCCCACAAAGATCCCTGATCCTCTGGACCGACACGAGCCTCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000132409.2 |
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