Pregenerated sensors for LITAF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022500Ensembl transcript IDs: ENSMUST00000023143.14, ENSMUST00000117360.8, ENSMUST00000162323.2
Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACGAAGAGATGACATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGTaGCTTCTGGTAGCAATTGTCTACTACCTCTGCAGTGGCGGGCTG | + |
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Preference number: 1 (lower is better) Translates to: HEEMTSSSSGWARVR*LLVAIVYYLCSGGL Trigger: CAGCCCGCCACTGCAGAGGTAGTAGACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTCATCTCTTCGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| 3UTR CCA 90 bp | GTAGACTTAGGATGGAGCCAGGGCCTCCTAGAAAGCTGGCCAGACTaGGACAATATTATACACGGCAGAGTGGTCACCCTAGAAAGAGCC | + |
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Preference number: 1 (lower is better) Translates to: VDLGWSQGLLESWPD*DNIIHGRVVTLERA Trigger: GGCTCTTTCTAGGGTGACCACTCTGCCGTGTATAATATTGTCCCAGTCTGGCCAGCTTTCTAGGAGGCCCTGGCTCCATCCTAAGTCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR CCA 90 bp | AGATCCTGTGTAGACTTAGGATGGAGCCAGGGCCTCCTAGAAAGCTaGCCAGACTGGGACAATATTATACACGGCAGAGTGGTCACCCTA | + |
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Preference number: 1 (lower is better) Translates to: RSCVDLGWSQGLLES*PDWDNIIHGRVVTL Trigger: TAGGGTGACCACTCTGCCGTGTATAATATTGTCCCAGTCTGGCCAGCTTTCTAGGAGGCCCTGGCTCCATCCTAAGTCTACACAGGATCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR CCA 90 bp | ATAATGGCTAGCACTTCCGGATCATTGTATGAACAGCTCAGGCAATaGCTAGGCTGCATCTTAACCAGCATGCAGACTTCTGTTCCGGGT | + |
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Preference number: 1 (lower is better) Translates to: IMASTSGSLYEQLRQ*LGCILTSMQTSVPG Trigger: ACCCGGAACAGAAGTCTGCATGCTGGTTAAGATGCAGCCTAGCCATTGCCTGAGCTGTTCATACAATGATCCGGAAGTGCTAGCCATTAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR TCA 90 bp | ACTTTCATCTGTGTTTATGAACAAAGGGAGTTCCCAGAAACTGTATaGGAAAGGAGACCCTTCACAGGCCAGGAGCTGAGACAGGAAGGA | + |
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Preference number: 1 (lower is better) Translates to: TFICVYEQREFPETV*ERRPFTGQELRQEG Trigger: TCCTTCCTGTCTCAGCTCCTGGCCTGTGAAGGGTCTCCTTTCTCATACAGTTTCTGGGAACTCCCTTTGTTCATAAACACAGATGAAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR-3UTR CCA 90 bp | TGGAGCCAGGGCCTCCTAGAAAGCTGGCCAGACTGGGACAATATTATACACGGCAGTTCGAGGCTGGCCTaGCCAACAAGCTGGACTGAA | + |
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Preference number: 2 (lower is better) Translates to: WSQGLLESWPDWDNIIHGSSRLA*PTSWTE Trigger: TTCAGTCCAGCTTGTTGGCCAGGCCAGCCTCGAACT...GCCGTGTATAATATTGTCCCAGTCTGGCCAGCTTTCTAGGAGGCCCTGGCTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR CAA 90 bp | CGTCTTCGCATGTGCAGGGCACAACTCCAGCAGCAGTTTCTGGGCTaGGAGGCTTGTTACTCTTCCTACCTTTCCCACCCCCTAAAAGAC | + |
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Preference number: 2 (lower is better) Translates to: RLRMCRAQLQQQFLG*EACYSSYLSHPLKD Trigger: GTCTTTTAGGGGGTGGGAAAGGTAGGAAGAGTAACAAGCCTCCAAGCCCAGAAACTGCTGCTGGAGTTGTGCCCTGCACATGCGAAGACG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR-3UTR TCA 90 bp | TCGTGGCTTCGGGGTTTGAGACTGGCACCAATGGCAAATCAGCAGAGGAGATGCGTTAGTGGGGTAACATaGGCAGGCAGGAAACCCTTG | + |
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Preference number: 2 (lower is better) Translates to: SWLRGLRLAPMANQQRRCVSGVT*AGRKPL Trigger: CAAGGGTTTCCTGCCTGCTCATGTTACCCCACTAAC...GCATCTCCTCTGCTGATTTGCCATTGGTGCCAGTCTCAAACCCCGAAGCCACGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR-3UTR CCA 90 bp | CGCAACTCGTTAGCAACAGTCATCTTGCTGCAGCTGAAGCCTGAGGTGTGGGTCTCCAGCAGCAGTTTCTaGGCTTGGAGGCTTGTTACT | + |
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Preference number: 2 (lower is better) Translates to: RNSLATVILLQLKPEVWVSSSSF*AWRLVT Trigger: AGTAACAAGCCTCCAAGCCCAGAAACTGCTGCTGGA...GACCCACACCTCAGGCTTCAGCTGCAGCAAGATGACTGTTGCTAACGAGTTGCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR-3UTR GCA 90 bp | GTTCCGGGTCAGGTTGACTCCGTACACTGTTATTTGCAGCAGATCCTGTGTAGAACACAGCTAGGGCCCTaGATGTCTGAGAGCCGAAGA | + |
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Preference number: 2 (lower is better) Translates to: VPGQVDSVHCYLQQILCRTQLGP*MSESRR Trigger: TCTTCGGCTCTCAGACATGCAGGGCCCTAGCTGTGT...TCTACACAGGATCTGCTGCAAATAACAGTGTACGGAGTCAACCTGACCCGGAAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR-3UTR TCA 90 bp | GAGCAACTTAAGATTCTTCGGGCAATGCCTGGAAACACAACACAAGGCCTTTCTTGTGTCTGGTGGGTGTaGGCAGCCCTTCTGTGCACT | + |
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Preference number: 2 (lower is better) Translates to: EQLKILRAMPGNTTQGLSCVWWV*AALLCT Trigger: AGTGCACAGAAGGGCTGCTCACACCCACCAGACACA...AGAAAGGCCTTGTGTTGTGTTTCCAGGCATTGCCCGAAGAATCTTAAGTTGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR-3UTR TCA 90 bp | GAGCAACTTAAGATTCTTCGGGCAATGCCTGGAAACACAACACAAGGCCTTTCTTGGGCAAGGGTCAGGTaGCTTCTGGTAGCAATTGTC | + |
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Preference number: 2 (lower is better) Translates to: EQLKILRAMPGNTTQGLSWARVR*LLVAIV Trigger: GACAATTGCTACCAGAAGTCACCTGACCCTTGCCCA...AGAAAGGCCTTGTGTTGTGTTTCCAGGCATTGCCCGAAGAATCTTAAGTTGCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR-3UTR TCA 90 bp | CGCAACTCGTTAGCAACAGTCATCTTGCTGCAGCTGAAGCCTGAGGTGTGGGTCGATCAAGCCAAACAGTaGAAAATAAGGCAAATCGTG | + |
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Preference number: 2 (lower is better) Translates to: RNSLATVILLQLKPEVWVDQAKQ*KIRQIV Trigger: CACGATTTGCCTTATTTTTCACTGTTTGGCTTGATC...GACCCACACCTCAGGCTTCAGCTGCAGCAAGATGACTGTTGCTAACGAGTTGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR-3UTR CCA 90 bp | GTTCCGGGTCAGGTTGACTCCGTACACTGTTATTTGCAGCAGATCCTGTGTAGAGAAAGCTGGCCAGACTaGGACAATATTATACACGGC | + |
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Preference number: 2 (lower is better) Translates to: VPGQVDSVHCYLQQILCRESWPD*DNIIHG Trigger: GCCGTGTATAATATTGTCCCAGTCTGGCCAGCTTTC...TCTACACAGGATCTGCTGCAAATAACAGTGTACGGAGTCAACCTGACCCGGAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR CAA 90 bp | CTTCTTGGCATTTTATTAAAACTTGAAAGCCGTGGCTTGCTGCCATaGATGACGACTAAGGGCTCCCGACAGCCAAACCTTCGAACGCAA | + |
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Preference number: 2 (lower is better) Translates to: LLGILLKLESRGLLP*MTTKGSRQPNLRTQ Trigger: TTGCGTTCGAAGGTTTGGCTGTCGGGAGCCCTTAGTCGTCATCAATGGCAGCAAGCCACGGCTTTCAAGTTTTAATAAAATGCCAAGAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR-3UTR TCA 90 bp | AACACAAGGCCTTTCTTCATAAAAGGTGAACTGGATTGTTCACTGAGTGATCAACAGGCAGGAAACCCTTaGGACAACACCCAAGGTCCA | + |
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Preference number: 2 (lower is better) Translates to: NTRPFFIKGELDCSLSDQQAGNP*DNTQGP Trigger: TGGACCTTGGGTGTTGTCTCAAGGGTTTCCTGCCTG...TTGATCACTCAGTGAACAATCCAGTTCACCTTTTATGAAGAAAGGCCTTGTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR-3UTR CCA 90 bp | CAACTCTATGAAATTAAAGTGATTCTGAGTGCCAGAGACGTCTGTCATTACAAAAGCAGTTTCTGGGCTTaGAGGCTTGTTACTCTTCCT | + |
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Preference number: 2 (lower is better) Translates to: QLYEIKVILSARDVCHYKSSFWA*RLVTLP Trigger: AGGAAGAGTAACAAGCCTCCAAGCCCAGAAACTGCT...TTTGTAATGACAGACGTCTCTGGCACTCAGAATCACTTTAATTTCATAGAGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR CCA 72 bp | GGATGGAGCCAGGGCCTCCTAGAAAGCTGGCCAGACTaGGACAATATTATACACGGCAGAGTGGTCACCCTA | + |
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Preference number: 3 (lower is better) Translates to: GWSQGLLESWPD*DNIIHGRVVTL Trigger: TAGGGTGACCACTCTGCCGTGTATAATATTGTCCCAGTCTGGCCAGCTTTCTAGGAGGCCCTGGCTCCATCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR TCA 72 bp | CCCCTAAAAGACACGAAGATGGAGCCCACGAAGAGATaGCATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGT | + |
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Preference number: 3 (lower is better) Translates to: PLKDTKMEPTKR*HQALLAGQGSG Trigger: ACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTCATCTCTTCGTGGGCTCCATCTTCGTGTCTTTTAGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR CCA 72 bp | TTCGCATGTGCAGGGCACAACTCCAGCAGCAGTTTCTaGGCTTGGAGGCTTGTTACTCTTCCTACCTTTCCC | + |
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Preference number: 3 (lower is better) Translates to: FACAGHNSSSSF*AWRLVTLPTFP Trigger: GGGAAAGGTAGGAAGAGTAACAAGCCTCCAAGCCCAGAAACTGCTGCTGGAGTTGTGCCCTGCACATGCGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR CCA 72 bp | GTAGACTTAGGATGGAGCCAGGGCCTCCTAGAAAGCTaGCCAGACTGGGACAATATTATACACGGCAGAGTG | + |
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Preference number: 3 (lower is better) Translates to: VDLGWSQGLLES*PDWDNIIHGRV Trigger: CACTCTGCCGTGTATAATATTGTCCCAGTCTGGCCAGCTTTCTAGGAGGCCCTGGCTCCATCCTAAGTCTAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR-3UTR CAA 90 bp | TGGAGCCAGGGCCTCCTAGAAAGCTGGCCAGACTGGGACAATATTATACACGGCGCCCTGAATTTGTCTTaGACATCCTTCTACTTGGTC | + |
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Preference number: 3 (lower is better) Translates to: WSQGLLESWPDWDNIIHGALNLS*TSFYLV Trigger: GACCAAGTAGAAGGATGTCAAAGACAAATTCAGGGC...GCCGTGTATAATATTGTCCCAGTCTGGCCAGCTTTCTAGGAGGCCCTGGCTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR TCA 72 bp | ATGACATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGTaGCTTCTGGTAGCAATTGTCTACTACCTCTGCAGT | + |
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Preference number: 3 (lower is better) Translates to: MTSSSSGWARVR*LLVAIVYYLCS Trigger: ACTGCAGAGGTAGTAGACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| 3UTR TCA 72 bp | GCAAATGGGGTAACAATCACAGTTAGTGGGGTAACATaGGCAGGCAGGAAACCCTTGAGACAACACCCAAGG | + |
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Preference number: 3 (lower is better) Translates to: ANGVTITVSGVT*AGRKPLRQHPR Trigger: CCTTGGGTGTTGTCTCAAGGGTTTCCTGCCTGCTCATGTTACCCCACTAACTGTGATTGTTACCCCATTTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR CCA 72 bp | AGCACTTCCGGATCATTGTATGAACAGCTCAGGCAATaGCTAGGCTGCATCTTAACCAGCATGCAGACTTCT | + |
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Preference number: 3 (lower is better) Translates to: STSGSLYEQLRQ*LGCILTSMQTS Trigger: AGAAGTCTGCATGCTGGTTAAGATGCAGCCTAGCCATTGCCTGAGCTGTTCATACAATGATCCGGAAGTGCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR-3UTR CAA 90 bp | GGTCAGGAAGGATTTTCTAGTGTAACAGAGCAACTTAAGATTCTTCGGGCAATGCAGCAGTTTCTGGGCTaGGAGGCTTGTTACTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: GQEGFSSVTEQLKILRAMQQFLG*EACYSS Trigger: GGAAGAGTAACAAGCCTCCAAGCCCAGAAACTGCTG...CATTGCCCGAAGAATCTTAAGTTGCTCTGTTACACTAGAAAATCCTTCCTGACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR TCA 72 bp | ACAGTGAAAAATAAGGCAAATCGTGGCTTCGGGGTTTaGGACTGGCACCAATGGCAAATCAGCAGAGGAGAT | + |
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Preference number: 3 (lower is better) Translates to: TVKNKANRGFGV*DWHQWQISRGD Trigger: ATCTCCTCTGCTGATTTGCCATTGGTGCCAGTCTCAAACCCCGAAGCCACGATTTGCCTTATTTTTCACTGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR TCA 72 bp | TCTGTCTCAGGGATGGGAATAGATCAAGCCAAACAGTaGAAAATAAGGCAAATCGTGGCTTCGGGGTTTGAG | + |
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Preference number: 3 (lower is better) Translates to: SVSGMGIDQAKQ*KIRQIVASGFE Trigger: CTCAAACCCCGAAGCCACGATTTGCCTTATTTTTCACTGTTTGGCTTGATCTATTCCCATCCCTGAGACAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR TCA 72 bp | AATGTCTCCCTGCCAAGTAACTTTCATCTGTGTTTATaGACAAAGGGAGTTCCCAGAAACTGTATGAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: NVSLPSNFHLCL*TKGVPRNCMRK Trigger: CTTTCTCATACAGTTTCTGGGAACTCCCTTTGTTCATAAACACAGATGAAAGTTACTTGGCAGGGAGACATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR TCA 72 bp | CTTTCAAAACTACACCAAACCTACATAGGCAGGCAATaGAATTACCTGTTTGTTTCTCTGTCAAAGAAAAAC | + |
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Preference number: 3 (lower is better) Translates to: LSKLHQTYIGRQ*NYLFVSLSKKN Trigger: GTTTTTCTTTGACAGAGAAACAAACAGGTAATTTCATTGCCTGCCTATGTAGGTTTGGTGTAGTTTTGAAAG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| CDS-3UTR TCA 90 bp | TGGAGCCAGGGCCTCCTAGAAAGCTGGCCAGACTGGGACAATATTATACACGGCTGCGGTGGGCACTACTaGAGGGCCTGCAGCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: WSQGLLESWPDWDNIIHGCGGHY*RACSCL Trigger: CAAGCAGCTGCAGGCCCTTCAGTAGTGCCCACCGCA...GCCGTGTATAATATTGTCCCAGTCTGGCCAGCTTTCTAGGAGGCCCTGGCTCCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| CDS-3UTR TCA 90 bp | GACATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTTGCGGTGGGCACTACTaGAGGGCCTGCAGCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: DIKLFWLGKGQVTSGSNCCGGHY*RACSCL Trigger: CAAGCAGCTGCAGGCCCTTCAGTAGTGCCCACCGCA...ACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS-3UTR TCA 90 bp | GACATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTCACAGGAGAGCCAGGTaGGGGCTCCCGCATTGTAGG | + |
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Preference number: 4 (lower is better) Translates to: DIKLFWLGKGQVTSGSNCHRRAR*GLPHCR Trigger: CCTACAATGCGGGAGCCCTCACCTGGCTCTCCTGTG...ACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS-3UTR CCA 90 bp | GACATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTCAATTGCGTTGGCGTTaGGGACAGGCACAGGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: DIKLFWLGKGQVTSGSNCQLRWR*GQAQAG Trigger: CCCAGCCTGTGCCTGTCCCCAACGCCAACGCAATTG...ACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS-3UTR CCA 90 bp | TTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTCTACTACCTCTGGCACGGCAATTGCGTTaGCGTTGGGGACAGGCACAG | + |
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Preference number: 4 (lower is better) Translates to: FWLGKGQVTSGSNCLLPLARQLR*RWGQAQ Trigger: CTGTGCCTGTCCCCAACGCCAACGCAATTGCCGTGC...CAGAGGTAGTAGACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS-3UTR GCA 90 bp | GACATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTACAAGCGCTTGTAGGTaGCCAGGAGCGCTTTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: DIKLFWLGKGQVTSGSNCTSACR*PGALCS Trigger: ACTGCAAAGCGCTCCTGGGCACCTACAAGCGCTTGT...ACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS-3UTR CCA 90 bp | TACTCTTCCTACCTTTCCCACCCCCTAAAAGACACGAAGATGGAGCCCACGAAGGGAGCGCTTTGCAGTTaGGGCAGTAGTGGTCCACAT | + |
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Preference number: 4 (lower is better) Translates to: YSSYLSHPLKDTKMEPTKGALCS*GSSGPH Trigger: ATGTGGACCACTACTGCCCCAACTGCAAAGCGCTCC...CTTCGTGGGCTCCATCTTCGTGTCTTTTAGGGGGTGGGAAAGGTAGGAAGAGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| CDS-3UTR CCA 90 bp | GACATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTGGAGCGCTTTGCAGTTaGGGCAGTAGTGGTCCACAT | + |
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Preference number: 4 (lower is better) Translates to: DIKLFWLGKGQVTSGSNCGALCS*GSSGPH Trigger: ATGTGGACCACTACTGCCCCAACTGCAAAGCGCTCC...ACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| 3UTR CAA 72 bp | GGCACAACTCCAGCAGCAGTTTCTGGGCTTGGAGGCTaGTTACTCTTCCTACCTTTCCCACCCCCTAAAAGA | + |
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Preference number: 4 (lower is better) Translates to: GTTPAAVSGLGG*LLFLPFPPPKR Trigger: TCTTTTAGGGGGTGGGAAAGGTAGGAAGAGTAACAAGCCTCCAAGCCCAGAAACTGCTGCTGGAGTTGTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| CDS-3UTR GCA 90 bp | TTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTCTACTACCTCTGGGGTCACGATCATCTTaGTGCAGGAAGGACAGCACA | + |
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Preference number: 4 (lower is better) Translates to: FWLGKGQVTSGSNCLLPLGSRSS*CRKDST Trigger: TGTGCTGTCCTTCCTGCAGCAAGATGATCGTGACCC...CAGAGGTAGTAGACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS-3UTR CCA 90 bp | TACTCTTCCTACCTTTCCCACCCCCTAAAAGACACGAAGATGGAGCCCACGAAGTGTTTCTTCATAGGTTaGGGGTGCGGTGGGCACTAC | + |
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Preference number: 4 (lower is better) Translates to: YSSYLSHPLKDTKMEPTKCFFIG*GCGGHY Trigger: GTAGTGCCCACCGCACCCCCAACCTATGAAGAAACA...CTTCGTGGGCTCCATCTTCGTGTCTTTTAGGGGGTGGGAAAGGTAGGAAGAGTA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| CDS-3UTR CCA 90 bp | TTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTCTACTACCTCTGTGTTTCTTCATAGGTTaGGGGTGCGGTGGGCACTAC | + |
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Preference number: 4 (lower is better) Translates to: FWLGKGQVTSGSNCLLPLCFFIG*GCGGHY Trigger: GTAGTGCCCACCGCACCCCCAACCTATGAAGAAACA...CAGAGGTAGTAGACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS-3UTR CCA 90 bp | GACATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTCATTCCCTTCCCATCTaGGCCTGTAATGAGCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: DIKLFWLGKGQVTSGSNCHSLPI*ACNEPC Trigger: ACAGGGCTCATTACAGGCCCAGATGGGAAGGGAATG...ACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS-3UTR CCA 90 bp | GAGCAACTTAAGATTCTTCGGGCAATGCCTGGAAACACAACACAAGGCCTTTCTGCACGGCAATTGCGTTaGCGTTGGGGACAGGCACAG | + |
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Preference number: 4 (lower is better) Translates to: EQLKILRAMPGNTTQGLSARQLR*RWGQAQ Trigger: CTGTGCCTGTCCCCAACGCCAACGCAATTGCCGTGC...AGAAAGGCCTTGTGTTGTGTTTCCAGGCATTGCCCGAAGAATCTTAAGTTGCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| CDS-3UTR GCA 90 bp | GTTCCGGGTCAGGTTGACTCCGTACACTGTTATTTGCAGCAGATCCTGTGTAGAGGGTCACGATCATCTTaGTGCAGGAAGGACAGCACA | + |
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Preference number: 4 (lower is better) Translates to: VPGQVDSVHCYLQQILCRGSRSS*CRKDST Trigger: TGTGCTGTCCTTCCTGCAGCAAGATGATCGTGACCC...TCTACACAGGATCTGCTGCAAATAACAGTGTACGGAGTCAACCTGACCCGGAAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| CDS-3UTR GCA 90 bp | GACATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTTCACGATCATCTTGCTaGAGGAAGGACAGCACATCT | + |
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Preference number: 4 (lower is better) Translates to: DIKLFWLGKGQVTSGSNCSRSSC*RKDSTS Trigger: AGATGTGCTGTCCTTCCTGCAGCAAGATGATCGTGA...ACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS-3UTR CCA 90 bp | GGTCAGGAAGGATTTTCTAGTGTAACAGAGCAACTTAAGATTCTTCGGGCAATGCAATTGCGTTGGCGTTaGGGACAGGCACAGGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: GQEGFSSVTEQLKILRAMQLRWR*GQAQAG Trigger: CCCAGCCTGTGCCTGTCCCCAACGCCAACGCAATTG...CATTGCCCGAAGAATCTTAAGTTGCTCTGTTACACTAGAAAATCCTTCCTGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| CDS-3UTR CCA 90 bp | GAGCAACTTAAGATTCTTCGGGCAATGCCTGGAAACACAACACAAGGCCTTTCTGGTGTAGTACGAAGGTaGATTCATTCCCTTCCCATC | + |
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Preference number: 4 (lower is better) Translates to: EQLKILRAMPGNTTQGLSGVVRR*IHSLPI Trigger: GATGGGAAGGGAATGAATCCACCTTCGTACTACACC...AGAAAGGCCTTGTGTTGTGTTTCCAGGCATTGCCCGAAGAATCTTAAGTTGCTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| 3UTR CAA 72 bp | ATTTTATTAAAACTTGAAAGCCGTGGCTTGCTGCCATaGATGACGACTAAGGGCTCCCGACAGCCAAACCTT | + |
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Preference number: 4 (lower is better) Translates to: ILLKLESRGLLP*MTTKGSRQPNL Trigger: AAGGTTTGGCTGTCGGGAGCCCTTAGTCGTCATCAATGGCAGCAAGCCACGGCTTTCAAGTTTTAATAAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| CDS-3UTR CCA 90 bp | AACACAAGGCCTTTCTTCATAAAAGGTGAACTGGATTGTTCACTGAGTGATCAACATTCCCTTCCCATCTaGGCCTGTAATGAGCCCTGT | + |
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Preference number: 4 (lower is better) Translates to: NTRPFFIKGELDCSLSDQHSLPI*ACNEPC Trigger: ACAGGGCTCATTACAGGCCCAGATGGGAAGGGAATG...TTGATCACTCAGTGAACAATCCAGTTCACCTTTTATGAAGAAAGGCCTTGTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| CDS-3UTR GCA 90 bp | CAACTCTATGAAATTAAAGTGATTCTGAGTGCCAGAGACGTCTGTCATTACAAATCACGATCATCTTGCTaGAGGAAGGACAGCACATCT | + |
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Preference number: 4 (lower is better) Translates to: QLYEIKVILSARDVCHYKSRSSC*RKDSTS Trigger: AGATGTGCTGTCCTTCCTGCAGCAAGATGATCGTGA...TTTGTAATGACAGACGTCTCTGGCACTCAGAATCACTTTAATTTCATAGAGTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| CDS TCA 90 bp | CAGCAACGCATCCCAGCAGACACAGACTGCCACAGGAGAGCCAGGTaGGGGCTCCCGCATTGTAGGACAGCTGGGTCACGATCATCTTGC | + |
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Preference number: 5 (lower is better) Translates to: QQRIPADTDCHRRAR*GLPHCRTAGSRSSC Trigger: GCAAGATGATCGTGACCCAGCTGTCCTACAATGCGGGAGCCCTCACCTGGCTCTCCTGTGGCAGTCTGTGTCTGCTGGGATGCGTTGCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS CCA 90 bp | CACAGGCTGGGTGTAGTACGAAGGTGGATTCATTCCCTTCCCATCTaGGCCTGTAATGAGCCCTGTGGCTGGTCCCGGCATAGGTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: HRLGVVRRWIHSLPI*ACNEPCGWSRHRCW Trigger: CCAGCACCTATGCCGGGACCAGCCACAGGGCTCATTACAGGCCCAGATGGGAAGGGAATGAATCCACCTTCGTACTACACCCAGCCTGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 ENSMUST00000162323.2 |
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| CDS CCA 90 bp | TGGATTCATTCCCTTCCCATCTGGGCCTGTAATGAGCCCTGTGGCTaGTCCCGGCATAGGTGCTGGGGGCGTTGGGTAGTAACTGTTGAC | + |
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Preference number: 5 (lower is better) Translates to: WIHSLPIWACNEPCG*SRHRCWGRWVVTVD Trigger: GTCAACAGTTACTACCCAACGCCCCCAGCACCTATGCCGGGACCAGCCACAGGGCTCATTACAGGCCCAGATGGGAAGGGAATGAATCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 ENSMUST00000162323.2 |
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| CDS-3UTR CAA 90 bp | TTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTCTACTACCTCTGAGGGCCTGCAGCTGCTaGGTAAGGTCCTGGAGCCGA | + |
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Preference number: 5 (lower is better) Translates to: FWLGKGQVTSGSNCLLPLRACSC*VRSWSR Trigger: TCGGCTCCAGGACCTTACCAAGCAGCTGCAGGCCCT...CAGAGGTAGTAGACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS-3UTR CAA 90 bp | GACATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTAGGGCCTGCAGCTGCTaGGTAAGGTCCTGGAGCCGA | + |
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Preference number: 5 (lower is better) Translates to: DIKLFWLGKGQVTSGSNCRACSC*VRSWSR Trigger: TCGGCTCCAGGACCTTACCAAGCAGCTGCAGGCCCT...ACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS-3UTR CAA 90 bp | TCGTGGCTTCGGGGTTTGAGACTGGCACCAATGGCAAATCAGCAGAGGAGATGCTGGGTCACGATCATCTaGCTGCAGGAAGGACAGCAC | + |
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Preference number: 5 (lower is better) Translates to: SWLRGLRLAPMANQQRRCWVTII*LQEGQH Trigger: GTGCTGTCCTTCCTGCAGCAAGATGATCGTGACCCA...GCATCTCCTCTGCTGATTTGCCATTGGTGCCAGTCTCAAACCCCGAAGCCACGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023143.14 |
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| CDS-3UTR CAA 90 bp | GACATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTCTGTTTCTTCATAGGTaGGGGGTGCGGTGGGCACTA | + |
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Preference number: 5 (lower is better) Translates to: DIKLFWLGKGQVTSGSNCLFLHR*GVRWAL Trigger: TAGTGCCCACCGCACCCCCAACCTATGAAGAAACAG...ACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS-3UTR CAA 90 bp | GACATCAAGCTCTTCTGGCTGGGCAAGGGTCAGGTGACTTCTGGTAGCAATTGTTGGGTCACGATCATCTaGCTGCAGGAAGGACAGCAC | + |
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Preference number: 5 (lower is better) Translates to: DIKLFWLGKGQVTSGSNCWVTII*LQEGQH Trigger: GTGCTGTCCTTCCTGCAGCAAGATGATCGTGACCCA...ACAATTGCTACCAGAAGTCACCTGACCCTTGCCCAGCCAGAAGAGCTTGATGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS CCA 72 bp | TCCCTTCCCATCTGGGCCTGTAATGAGCCCTGTGGCTaGTCCCGGCATAGGTGCTGGGGGCGTTGGGTAGTA | + |
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Preference number: 6 (lower is better) Translates to: SLPIWACNEPCG*SRHRCWGRWVV Trigger: TACTACCCAACGCCCCCAGCACCTATGCCGGGACCAGCCACAGGGCTCATTACAGGCCCAGATGGGAAGGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 ENSMUST00000162323.2 |
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| CDS GCA 72 bp | GACAGGCTGCTGCACATAAACGGTCTGCACGGCAATTaGGTTGGCGTTGGGGACAGGCACAGGCTGGGTGTA | + |
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Preference number: 6 (lower is better) Translates to: DRLLHINGLHGN*VGVGDRHRLGV Trigger: TACACCCAGCCTGTGCCTGTCCCCAACGCCAACGCAATTGCCGTGCAGACCGTTTATGTGCAGCAGCCTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 ENSMUST00000162323.2 |
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| CDS GCA 72 bp | CTCCCGCATTGTAGGACAGCTGGGTCACGATCATCTTaGTGCAGGAAGGACAGCACATCTGGACGGGGCGGT | + |
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Preference number: 6 (lower is better) Translates to: LPHCRTAGSRSS*CRKDSTSGRGG Trigger: ACCGCCCCGTCCAGATGTGCTGTCCTTCCTGCAGCAAGATGATCGTGACCCAGCTGTCCTACAATGCGGGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS CCA 72 bp | GCTGCTGCACATAAACGGTCTGCACGGCAATTGCGTTaGCGTTGGGGACAGGCACAGGCTGGGTGTAGTACG | + |
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Preference number: 6 (lower is better) Translates to: AAAHKRSARQLR*RWGQAQAGCST Trigger: CGTACTACACCCAGCCTGTGCCTGTCCCCAACGCCAACGCAATTGCCGTGCAGACCGTTTATGTGCAGCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 ENSMUST00000162323.2 |
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| CDS TCA 72 bp | TGTTTCTTCATAGGTTGGGGGTGCGGTGGGCACTACTaGAGGGCCTGCAGCTGCTTGGTAAGGTCCTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: CFFIGWGCGGHY*RACSCLVRSWS Trigger: GCTCCAGGACCTTACCAAGCAGCTGCAGGCCCTTCAGTAGTGCCCACCGCACCCCCAACCTATGAAGAAACA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 ENSMUST00000162323.2 |
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| CDS GCA 72 bp | CCGCATTGTAGGACAGCTGGGTCACGATCATCTTGCTaGAGGAAGGACAGCACATCTGGACGGGGCGGTCAT | + |
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Preference number: 6 (lower is better) Translates to: PHCRTAGSRSSC*RKDSTSGRGGH Trigger: ATGACCGCCCCGTCCAGATGTGCTGTCCTTCCTGCAGCAAGATGATCGTGACCCAGCTGTCCTACAATGCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS CCA 72 bp | ACAAGCGCTTGTAGGTGCCCAGGAGCGCTTTGCAGTTaGGGCAGTAGTGGTCCACATCCTGTAGGGCGTCTA | + |
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Preference number: 6 (lower is better) Translates to: TSACRCPGALCS*GSSGPHPVGRL Trigger: TAGACGCCCTACAGGATGTGGACCACTACTGCCCCAACTGCAAAGCGCTCCTGGGCACCTACAAGCGCTTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 |
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| CDS CAA 90 bp | CATAGAAGGAGACAGGCTGCTGCACATAAACGGTCTGCACGGCAATaGCGTTGGCGTTGGGGACAGGCACAGGCTGGGTGTAGTACGAAG | + |
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Preference number: 6 (lower is better) Translates to: HRRRQAAAHKRSARQ*RWRWGQAQAGCSTK Trigger: CTTCGTACTACACCCAGCCTGTGCCTGTCCCCAACGCCAACGCAATTGCCGTGCAGACCGTTTATGTGCAGCAGCCTGTCTCCTTCTATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 ENSMUST00000162323.2 |
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| CDS CCA 72 bp | CCCTGTGGCTGGTCCCGGCATAGGTGCTGGGGGCGTTaGGTAGTAACTGTTGACACCCACTGTTTCTTCATA | + |
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Preference number: 6 (lower is better) Translates to: PCGWSRHRCWGR*VVTVDTHCFFI Trigger: TATGAAGAAACAGTGGGTGTCAACAGTTACTACCCAACGCCCCCAGCACCTATGCCGGGACCAGCCACAGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 ENSMUST00000162323.2 |
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| CDS CCA 72 bp | GGTGTAGTACGAAGGTGGATTCATTCCCTTCCCATCTaGGCCTGTAATGAGCCCTGTGGCTGGTCCCGGCAT | + |
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Preference number: 6 (lower is better) Translates to: GVVRRWIHSLPI*ACNEPCGWSRH Trigger: ATGCCGGGACCAGCCACAGGGCTCATTACAGGCCCAGATGGGAAGGGAATGAATCCACCTTCGTACTACACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023143.14 ENSMUST00000117360.8 ENSMUST00000162323.2 |
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