Pregenerated sensors for LIPT2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030725Ensembl transcript IDs: ENSMUST00000032967.4, ENSMUST00000207825.2
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGACTAGAAGCTTTCTATTGTAGAACCATCATCCCAAGGATAAGGTaGATGAATGTCCTTCAGCTGGGGCTGTCCTCAGAGATTAACGTG | + |
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Preference number: 1 (lower is better) Translates to: RLEAFYCRTIIPRIR*MNVLQLGLSSEINV Trigger: CACGTTAATCTCTGAGGACAGCCCCAGCTGAAGGACATTCATTCACCTTATCCTTGGGATGATGGTTCTACAATAGAAAGCTTCTAGTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207825.2 |
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| 3UTR TCA 90 bp | AACCAACCCAAGTCCATTTCTTCCAAATTCCCAATCAATGAGAATTaGGGTAATGTGTTCCTTGGCTGTCTTGAATCACAGATTTTCTGC | + |
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Preference number: 1 (lower is better) Translates to: NQPKSISSKFPINEN*GNVFLGCLESQIFC Trigger: GCAGAAAATCTGTGATTCAAGACAGCCAAGGAACACATTACCTCAATTCTCATTGATTGGGAATTTGGAAGAAATGGACTTGGGTTGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR TCA 90 bp | TGGAGGGAGTACCTTGTCTTTATGAAGCCTCTAACCCATCTCTGTTaGCCTCAAGCAAAAATAGGTAAATTATCAAACTTGAGACATTCA | + |
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Preference number: 1 (lower is better) Translates to: WREYLVFMKPLTHLC*PQAKIGKLSNLRHS Trigger: TGAATGTCTCAAGTTTGATAATTTACCTATTTTTGCTTGAGGTCAACAGAGATGGGTTAGAGGCTTCATAAAGACAAGGTACTCCCTCCA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR-3UTR GCA 90 bp | AGACCCAGGTCTCCTGAGAAGAGTAACTTTATCACTTCCCTGGGCCTCACAGAGGATACAGGGAGCAATTaGTCAGGGCCTGTCATGGTC | + |
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Preference number: 2 (lower is better) Translates to: RPRSPEKSNFITSLGLTEDTGSN*SGPVMV Trigger: GACCATGACAGGCCCTGAGCAATTGCTCCCTGTATC...CTCTGTGAGGCCCAGGGAAGTGATAAAGTTACTCTTCTCAGGAGACCTGGGTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR-3UTR TCA 90 bp | CATCCCAAGGATAAGGTGAATGAATGTCCTTCAGCTGGGGCTGTCCTCAGAGATGAATGCCACAAGGAATaGTGGCATTACTTCATCCAC | + |
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Preference number: 2 (lower is better) Translates to: HPKDKVNECPSAGAVLRDECHKE*WHYFIH Trigger: GTGGATGAAGTAATGCCATCATTCCTTGTGGCATTC...ATCTCTGAGGACAGCCCCAGCTGAAGGACATTCATTCACCTTATCCTTGGGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207825.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGTACCTTGTCTTTATGAAGCCTCTAACCCATCTCTGTTGACCTCAAGCAAAGCTCAGGGCCTGTCATaGTCAGTGAATCAGAGTAGT | + |
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Preference number: 2 (lower is better) Translates to: GVPCLYEASNPSLLTSSKAQGLS*SVNQSS Trigger: ACTACTCTGATTCACTGACCATGACAGGCCCTGAGC...TTTGCTTGAGGTCAACAGAGATGGGTTAGAGGCTTCATAAAGACAAGGTACTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR CAA 90 bp | ATGAATGTCCTTCAGCTGGGGCTGTCCTCAGAGATTAACGTGCACTaGAAAGTCTCCTTGAATGCCACAAGGAATGATGGCATTACTTCA | + |
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Preference number: 2 (lower is better) Translates to: MNVLQLGLSSEINVH*KVSLNATRNDGITS Trigger: TGAAGTAATGCCATCATTCCTTGTGGCATTCAAGGAGACTTTCAAGTGCACGTTAATCTCTGAGGACAGCCCCAGCTGAAGGACATTCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207825.2 |
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| 3UTR-3UTR CCA 90 bp | GGAGTACCTTGTCTTTATGAAGCCTCTAACCCATCTCTGTTGACCTCAAGCAAAGGCCTCACAGAGATTTaGTTCCCACAGAACTCAAAA | + |
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Preference number: 2 (lower is better) Translates to: GVPCLYEASNPSLLTSSKGLTEI*FPQNSK Trigger: TTTTGAGTTCTGTGGGAACCAAATCTCTGTGAGGCC...TTTGCTTGAGGTCAACAGAGATGGGTTAGAGGCTTCATAAAGACAAGGTACTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR-3UTR TCA 90 bp | GAGGGAGTACCTTGTCTTTATGAAGCCTCTAACCCATCTCTGTTGACCTCAAGCGCTTTAGGTAGCCTGTaGCTTTTCATAGTATTTTCA | + |
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Preference number: 2 (lower is better) Translates to: EGVPCLYEASNPSLLTSSALGSL*LFIVFS Trigger: TGAAAATACTATGAAAAGTCACAGGCTACCTAAAGC...GCTTGAGGTCAACAGAGATGGGTTAGAGGCTTCATAAAGACAAGGTACTCCCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR-3UTR TCA 90 bp | CAATCACAATGGAGTGAGCCATCTTGGAAAGTGAACTCCAGCATAGTTAAGCCTGTTCCTTGGCTGTCTTaGATCACAGATTTTCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: QSQWSEPSWKVNSSIVKPVPWLS*ITDFLL Trigger: AAGCAGAAAATCTGTGATTCAAGACAGCCAAGGAAC...AGGCTTAACTATGCTGGAGTTCACTTTCCAAGATGGCTCACTCCATTGTGATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR-3UTR GCA 90 bp | CAATCACAATGGAGTGAGCCATCTTGGAAAGTGAACTCCAGCATAGTTAAGCCTGAATCACAGATTTTCTaGTTCTTAGCAGGCCTGACA | + |
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Preference number: 2 (lower is better) Translates to: QSQWSEPSWKVNSSIVKPESQIF*FLAGLT Trigger: TGTCAGGCCTGCTAAGAAGCAGAAAATCTGTGATTC...AGGCTTAACTATGCTGGAGTTCACTTTCCAAGATGGCTCACTCCATTGTGATTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR-3UTR CAA 90 bp | CCTGAGAAGAGTAACTTTATCACTTCCCTGGGCCTCACAGAGATTTGGTTCCCAAGATACAGGGAGCAATaGCTCAGGGCCTGTCATGGT | + |
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Preference number: 3 (lower is better) Translates to: PEKSNFITSLGLTEIWFPRYREQ*LRACHG Trigger: ACCATGACAGGCCCTGAGCAATTGCTCCCTGTATCT...TGGGAACCAAATCTCTGTGAGGCCCAGGGAAGTGATAAAGTTACTCTTCTCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR CCA 72 bp | CCAGGTCTCCTGAGAAGAGTAACTTTATCACTTCCCTaGGCCTCACAGAGATTTGGTTCCCACAGAACTCAA | + |
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Preference number: 3 (lower is better) Translates to: PGLLRRVTLSLP*ASQRFGSHRTQ Trigger: TTGAGTTCTGTGGGAACCAAATCTCTGTGAGGCCCAGGGAAGTGATAAAGTTACTCTTCTCAGGAGACCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR TCA 72 bp | GTGAACTCCAGCATAGTTAAGCCTTCCAATGACAACTaGCCTTTAAATGGAAGCTCTGGTAAGACTCCAACC | + |
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Preference number: 3 (lower is better) Translates to: VNSSIVKPSNDN*PLNGSSGKTPT Trigger: GGTTGGAGTCTTACCAGAGCTTCCATTTAAAGGTCAGTTGTCATTGGAAGGCTTAACTATGCTGGAGTTCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR TCA 72 bp | CGTGCACTTGAAAGTCTCCTTGAATGCCACAAGGAATaGTGGCATTACTTCATCCACAGTGACAAGTCTTTG | + |
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Preference number: 3 (lower is better) Translates to: RALESLLECHKE*WHYFIHSDKSL Trigger: CAAAGACTTGTCACTGTGGATGAAGTAATGCCATCATTCCTTGTGGCATTCAAGGAGACTTTCAAGTGCACG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207825.2 |
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| 3UTR TCA 72 bp | AAGTCCATTTCTTCCAAATTCCCAATCAATGAGAATTaGGGTAATGTGTTCCTTGGCTGTCTTGAATCACAG | + |
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Preference number: 3 (lower is better) Translates to: KSISSKFPINEN*GNVFLGCLESQ Trigger: CTGTGATTCAAGACAGCCAAGGAACACATTACCTCAATTCTCATTGATTGGGAATTTGGAAGAAATGGACTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR TCA 72 bp | TACCTTGTCTTTATGAAGCCTCTAACCCATCTCTGTTaGCCTCAAGCAAAAATAGGTAAATTATCAAACTTG | + |
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Preference number: 3 (lower is better) Translates to: YLVFMKPLTHLC*PQAKIGKLSNL Trigger: CAAGTTTGATAATTTACCTATTTTTGCTTGAGGTCAACAGAGATGGGTTAGAGGCTTCATAAAGACAAGGTA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS-3UTR GCA 90 bp | CAATCACAATGGAGTGAGCCATCTTGGAAAGTGAACTCCAGCATAGTTAAGCCTGCGCCGCCACGTGGGTaGGCAGGCGCAGGCCTAGGA | + |
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Preference number: 4 (lower is better) Translates to: QSQWSEPSWKVNSSIVKPAPPRG*AGAGLG Trigger: TCCTAGGCCTGCGCCTGCGCACCCACGTGGCGGCGC...AGGCTTAACTATGCTGGAGTTCACTTTCCAAGATGGCTCACTCCATTGTGATTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS-3UTR CCA 90 bp | AGACCCAGGTCTCCTGAGAAGAGTAACTTTATCACTTCCCTGGGCCTCACAGAGGTATACGGGCCCCGCTaGCTCGCAGACCAAGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: RPRSPEKSNFITSLGLTEVYGPR*LADQEH Trigger: GTGCTCTTGGTCTGCGAGCCAGCGGGGCCCGTATAC...CTCTGTGAGGCCCAGGGAAGTGATAAAGTTACTCTTCTCAGGAGACCTGGGTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS-3UTR CCA 90 bp | GTGACTCCAGTTCCAACCAGTCCACAAGGCACAATGTGCTCAAACCATGTGAGGGTATACGGGCCCCGCTaGCTCGCAGACCAAGAGCAC | + |
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Preference number: 4 (lower is better) Translates to: VTPVPTSPQGTMCSNHVRVYGPR*LADQEH Trigger: GTGCTCTTGGTCTGCGAGCCAGCGGGGCCCGTATAC...CCTCACATGGTTTGAGCACATTGTGCCTTGTGGACTGGTTGGAACTGGAGTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207825.2 |
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| CDS-3UTR CCA 90 bp | CAATCACAATGGAGTGAGCCATCTTGGAAAGTGAACTCCAGCATAGTTAAGCCTAACTGGCCCGGGCCGTaGAAAGTGGCCAGGCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: QSQWSEPSWKVNSSIVKPNWPGP*KVARPP Trigger: CGGCGGCCTGGCCACTTTCCACGGCCCGGGCCAGTT...AGGCTTAACTATGCTGGAGTTCACTTTCCAAGATGGCTCACTCCATTGTGATTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS-3UTR TCA 90 bp | ATACAGGGAGCAATTGCTCAGGGCCTGTCATGGTCAGTGAATCAGAGTAGTTCTCCAAGCCGTGGGACGTaGTGTGTCTTCCACAGCGGA | + |
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Preference number: 4 (lower is better) Translates to: IQGAIAQGLSWSVNQSSSPSRGT*CVFHSG Trigger: TCCGCTGTGGAAGACACATCACGTCCCACGGCTTGG...AGAACTACTCTGATTCACTGACCATGACAGGCCCTGAGCAATTGCTCCCTGTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032967.4 ENSMUST00000207825.2 |
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| CDS-3UTR GCA 90 bp | GGAGTACCTTGTCTTTATGAAGCCTCTAACCCATCTCTGTTGACCTCAAGCAAACGATCGCGCAGATCTTaGGCTCCCCCAGCCAGACGC | + |
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Preference number: 4 (lower is better) Translates to: GVPCLYEASNPSLLTSSKRSRRS*APPARR Trigger: GCGTCTGGCTGGGGGAGCGCAAGATCTGCGCGATCG...TTTGCTTGAGGTCAACAGAGATGGGTTAGAGGCTTCATAAAGACAAGGTACTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS-3UTR TCA 90 bp | GCAACCAAGCAATCACAATGGAGTGAGCCATCTTGGAAAGTGAACTCCAGCATACCAAGCCGTGGGACGTaGTGTGTCTTCCACAGCGGA | + |
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Preference number: 4 (lower is better) Translates to: ATKQSQWSEPSWKVNSSIPSRGT*CVFHSG Trigger: TCCGCTGTGGAAGACACATCACGTCCCACGGCTTGG...TATGCTGGAGTTCACTTTCCAAGATGGCTCACTCCATTGTGATTGCTTGGTTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS-3UTR TCA 90 bp | ATACAGGGAGCAATTGCTCAGGGCCTGTCATGGTCAGTGAATCAGAGTAGTTCTCCATGTGAGGTCGGTTaGACAGTTCAGAGCCAAGCC | + |
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Preference number: 4 (lower is better) Translates to: IQGAIAQGLSWSVNQSSSPCEVG*TVQSQA Trigger: GGCTTGGCTCTGAACTGTTCAACCGACCTCACATGG...AGAACTACTCTGATTCACTGACCATGACAGGCCCTGAGCAATTGCTCCCTGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS-3UTR TCA 90 bp | TCTGAGGTAGGTGAGGAGATACAGGGAGCAATTGCTCAGGGCCTGTCATGGTCAGAATGCCACAAGGAATaGTGGCATTACTTCATCCAC | + |
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Preference number: 4 (lower is better) Translates to: SEVGEEIQGAIAQGLSWSECHKE*WHYFIH Trigger: GTGGATGAAGTAATGCCATCATTCCTTGTGGCATTC...TGACCATGACAGGCCCTGAGCAATTGCTCCCTGTATCTCCTCACCTACCTCAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR CAA 72 bp | CTTCAGCTGGGGCTGTCCTCAGAGATTAACGTGCACTaGAAAGTCTCCTTGAATGCCACAAGGAATGATGGC | + |
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Preference number: 4 (lower is better) Translates to: LQLGLSSEINVH*KVSLNATRNDG Trigger: GCCATCATTCCTTGTGGCATTCAAGGAGACTTTCAAGTGCACGTTAATCTCTGAGGACAGCCCCAGCTGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000207825.2 |
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| CDS-3UTR CCA 90 bp | AACCCAAGTCCATTTCTTCCAAATTCCCAATCAATGAGAATTGAGGTAATGTGTGGGTGGCAGAGCAACTaGCCCGGGCCGTGGAAAGTG | + |
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Preference number: 4 (lower is better) Translates to: NPSPFLPNSQSMRIEVMCGWQSN*PGPWKV Trigger: CACTTTCCACGGCCCGGGCCAGTTGCTCTGCCACCC...ACACATTACCTCAATTCTCATTGATTGGGAATTTGGAAGAAATGGACTTGGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| 3UTR CAA 72 bp | CTGTCCTCAGAGATTAACGTGCACTTGAAAGTCTCCTaGAATGCCACAAGGAATGATGGCATTACTTCATCC | + |
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Preference number: 4 (lower is better) Translates to: LSSEINVHLKVS*NATRNDGITSS Trigger: GGATGAAGTAATGCCATCATTCCTTGTGGCATTCAAGGAGACTTTCAAGTGCACGTTAATCTCTGAGGACAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000207825.2 |
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| CDS-3UTR TCA 90 bp | AACCCAAGTCCATTTCTTCCAAATTCCCAATCAATGAGAATTGAGGTAATGTGTTGTGCTCAAACCATGTaGGGTCGGTTGAACAGTTCA | + |
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Preference number: 4 (lower is better) Translates to: NPSPFLPNSQSMRIEVMCCAQTM*GRLNSS Trigger: TGAACTGTTCAACCGACCTCACATGGTTTGAGCACA...ACACATTACCTCAATTCTCATTGATTGGGAATTTGGAAGAAATGGACTTGGGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS CCA 90 bp | AGTCAAGCACCGGGTGGCAGAGCAACTGGCCCGGGCCGTGGAAAGTaGCCAGGCCGCCGCGGCCGGTGGCGCGCACCTCGGCGCCCAAGG | + |
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Preference number: 5 (lower is better) Translates to: SQAPGGRATGPGRGK*PGRRGRWRAPRRPR Trigger: CCTTGGGCGCCGAGGTGCGCGCCACCGGCCGCGGCGGCCTGGCCACTTTCCACGGCCCGGGCCAGTTGCTCTGCCACCCGGTGCTTGACT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS CCA 90 bp | AGCCGCAAGTCAAGCACCGGGTGGCAGAGCAACTGGCCCGGGCCGTaGAAAGTGGCCAGGCCGCCGCGGCCGGTGGCGCGCACCTCGGCG | + |
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Preference number: 5 (lower is better) Translates to: SRKSSTGWQSNWPGP*KVARPPRPVARTSA Trigger: CGCCGAGGTGCGCGCCACCGGCCGCGGCGGCCTGGCCACTTTCCACGGCCCGGGCCAGTTGCTCTGCCACCCGGTGCTTGACTTGCGGCT 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS CCA 90 bp | CGCAGGCCTAGGAGCCGCAAGTCAAGCACCGGGTGGCAGAGCAACTaGCCCGGGCCGTGGAAAGTGGCCAGGCCGCCGCGGCCGGTGGCG | + |
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Preference number: 5 (lower is better) Translates to: RRPRSRKSSTGWQSN*PGPWKVARPPRPVA Trigger: CGCCACCGGCCGCGGCGGCCTGGCCACTTTCCACGGCCCGGGCCAGTTGCTCTGCCACCCGGTGCTTGACTTGCGGCTCCTAGGCCTGCG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS GCA 90 bp | GTTCGCACAGTCGCACGGCGCACGCCTCCAGCGCCGCCACGTGGGTaGGCAGGCGCAGGCCTAGGAGCCGCAAGTCAAGCACCGGGTGGC | + |
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Preference number: 5 (lower is better) Translates to: VRTVARRTPPAPPRG*AGAGLGAASQAPGG Trigger: GCCACCCGGTGCTTGACTTGCGGCTCCTAGGCCTGCGCCTGCGCACCCACGTGGCGGCGCTGGAGGCGTGCGCCGTGCGACTGTGCGAAC 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS CCA 90 bp | TGGGTGCGCAGGCGCAGGCCTAGGAGCCGCAAGTCAAGCACCGGGTaGCAGAGCAACTGGCCCGGGCCGTGGAAAGTGGCCAGGCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: WVRRRRPRSRKSSTG*QSNWPGPWKVARPP Trigger: CGGCGGCCTGGCCACTTTCCACGGCCCGGGCCAGTTGCTCTGCCACCCGGTGCTTGACTTGCGGCTCCTAGGCCTGCGCCTGCGCACCCA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS CCA 90 bp | CGAAGTTCGCACAGTCGCACGGCGCACGCCTCCAGCGCCGCCACGTaGGTGCGCAGGCGCAGGCCTAGGAGCCGCAAGTCAAGCACCGGG | + |
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Preference number: 5 (lower is better) Translates to: RSSHSRTAHASSAAT*VRRRRPRSRKSSTG Trigger: CCCGGTGCTTGACTTGCGGCTCCTAGGCCTGCGCCTGCGCACCCACGTGGCGGCGCTGGAGGCGTGCGCCGTGCGACTGTGCGAACTTCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS CCA 90 bp | TGTATACGGGCCCCGCTGGCTCGCAGACCAAGAGCACACCCGCTTTaGTCCCCGACAGGGTCCCAGGGCGAGGGTCTGCCTGTAGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: CIRAPLARRPRAHPL*SPTGSQGEGLPVAA Trigger: GGCGGCTACAGGCAGACCCTCGCCCTGGGACCCTGTCGGGGACCAAAGCGGGTGTGCTCTTGGTCTGCGAGCCAGCGGGGCCCGTATACA 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032967.4 ENSMUST00000207825.2 |
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| CDS CCA 90 bp | TGCTCAAACCATGTGAGGTCGGTTGAACAGTTCAGAGCCAAGCCGTaGGACGTGATGTGTCTTCCACAGCGGACTCCGATCGCGCAGATC | + |
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Preference number: 5 (lower is better) Translates to: CSNHVRSVEQFRAKP*DVMCLPQRTPIAQI Trigger: GATCTGCGCGATCGGAGTCCGCTGTGGAAGACACATCACGTCCCACGGCTTGGCTCTGAACTGTTCAACCGACCTCACATGGTTTGAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS-3UTR CAA 90 bp | AACTTTATCACTTCCCTGGGCCTCACAGAGATTTGGTTCCCACAGAACTCAAAACCGATCGCGCAGATCTaGCGCTCCCCCAGCCAGACG | + |
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Preference number: 5 (lower is better) Translates to: NFITSLGLTEIWFPQNSKPIAQI*RSPSQT Trigger: CGTCTGGCTGGGGGAGCGCAAGATCTGCGCGATCGG...TTTTGAGTTCTGTGGGAACCAAATCTCTGTGAGGCCCAGGGAAGTGATAAAGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS GCA 90 bp | CTCAGGGAAGTGACTCCAGTTCCAACCAGTCCACAAGGCACAATGTaGTCAAACCATGTGAGGTCGGTTGAACAGTTCAGAGCCAAGCCG | + |
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Preference number: 5 (lower is better) Translates to: LREVTPVPTSPQGTM*SNHVRSVEQFRAKP Trigger: CGGCTTGGCTCTGAACTGTTCAACCGACCTCACATGGTTTGAGCACATTGTGCCTTGTGGACTGGTTGGAACTGGAGTCACTTCCCTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS TCA 90 bp | AACCAGTCCACAAGGCACAATGTGCTCAAACCATGTGAGGTCGGTTaGACAGTTCAGAGCCAAGCCGTGGGACGTGATGTGTCTTCCACA | + |
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Preference number: 5 (lower is better) Translates to: NQSTRHNVLKPCEVG*TVQSQAVGRDVSST Trigger: TGTGGAAGACACATCACGTCCCACGGCTTGGCTCTGAACTGTTCAACCGACCTCACATGGTTTGAGCACATTGTGCCTTGTGGACTGGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS CCA 72 bp | CCGGGTGGCAGAGCAACTGGCCCGGGCCGTGGAAAGTaGCCAGGCCGCCGCGGCCGGTGGCGCGCACCTCGG | + |
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Preference number: 6 (lower is better) Translates to: PGGRATGPGRGK*PGRRGRWRAPR Trigger: CCGAGGTGCGCGCCACCGGCCGCGGCGGCCTGGCCACTTTCCACGGCCCGGGCCAGTTGCTCTGCCACCCGG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS CCA 72 bp | TCAAGCACCGGGTGGCAGAGCAACTGGCCCGGGCCGTaGAAAGTGGCCAGGCCGCCGCGGCCGGTGGCGCGC | + |
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Preference number: 6 (lower is better) Translates to: SSTGWQSNWPGP*KVARPPRPVAR Trigger: GCGCGCCACCGGCCGCGGCGGCCTGGCCACTTTCCACGGCCCGGGCCAGTTGCTCTGCCACCCGGTGCTTGA 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS GCA 72 bp | GTCGCACGGCGCACGCCTCCAGCGCCGCCACGTGGGTaGGCAGGCGCAGGCCTAGGAGCCGCAAGTCAAGCA | + |
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Preference number: 6 (lower is better) Translates to: VARRTPPAPPRG*AGAGLGAASQA Trigger: TGCTTGACTTGCGGCTCCTAGGCCTGCGCCTGCGCACCCACGTGGCGGCGCTGGAGGCGTGCGCCGTGCGAC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS CCA 72 bp | CACAGTCGCACGGCGCACGCCTCCAGCGCCGCCACGTaGGTGCGCAGGCGCAGGCCTAGGAGCCGCAAGTCA | + |
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Preference number: 6 (lower is better) Translates to: HSRTAHASSAAT*VRRRRPRSRKS Trigger: TGACTTGCGGCTCCTAGGCCTGCGCCTGCGCACCCACGTGGCGGCGCTGGAGGCGTGCGCCGTGCGACTGTG 74% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS CCA 72 bp | AGGAGCCGCAAGTCAAGCACCGGGTGGCAGAGCAACTaGCCCGGGCCGTGGAAAGTGGCCAGGCCGCCGCGG | + |
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Preference number: 6 (lower is better) Translates to: RSRKSSTGWQSN*PGPWKVARPPR Trigger: CCGCGGCGGCCTGGCCACTTTCCACGGCCCGGGCCAGTTGCTCTGCCACCCGGTGCTTGACTTGCGGCTCCT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS CAA 90 bp | GTGTATACGGGCCCCGCTGGCTCGCAGACCAAGAGCACACCCGCTTaGGTCCCCGACAGGGTCCCAGGGCGAGGGTCTGCCTGTAGCCGC | + |
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Preference number: 6 (lower is better) Translates to: VYTGPAGSQTKSTPA*VPDRVPGRGSACSR Trigger: GCGGCTACAGGCAGACCCTCGCCCTGGGACCCTGTCGGGGACCAAAGCGGGTGTGCTCTTGGTCTGCGAGCCAGCGGGGCCCGTATACAC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032967.4 ENSMUST00000207825.2 |
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| CDS GCA 72 bp | TGTGTCTTCCACAGCGGACTCCGATCGCGCAGATCTTaGGCTCCCCCAGCCAGACGCCAGTGTAGGGCGGCG | + |
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Preference number: 6 (lower is better) Translates to: CVFHSGLRSRRS*APPARRQCRAA Trigger: CGCCGCCCTACACTGGCGTCTGGCTGGGGGAGCGCAAGATCTGCGCGATCGGAGTCCGCTGTGGAAGACACA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS TCA 72 bp | GGTCGGTTGAACAGTTCAGAGCCAAGCCGTGGGACGTaGTGTGTCTTCCACAGCGGACTCCGATCGCGCAGA | + |
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Preference number: 6 (lower is better) Translates to: GRLNSSEPSRGT*CVFHSGLRSRR Trigger: TCTGCGCGATCGGAGTCCGCTGTGGAAGACACATCACGTCCCACGGCTTGGCTCTGAACTGTTCAACCGACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS CCA 72 bp | CATGTGAGGTCGGTTGAACAGTTCAGAGCCAAGCCGTaGGACGTGATGTGTCTTCCACAGCGGACTCCGATC | + |
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Preference number: 6 (lower is better) Translates to: HVRSVEQFRAKP*DVMCLPQRTPI Trigger: GATCGGAGTCCGCTGTGGAAGACACATCACGTCCCACGGCTTGGCTCTGAACTGTTCAACCGACCTCACATG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS TCA 72 bp | CAACCAGTCCACAAGGCACAATGTGCTCAAACCATGTaGGGTCGGTTGAACAGTTCAGAGCCAAGCCGTGGG | + |
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Preference number: 6 (lower is better) Translates to: QPVHKAQCAQTM*GRLNSSEPSRG Trigger: CCCACGGCTTGGCTCTGAACTGTTCAACCGACCTCACATGGTTTGAGCACATTGTGCCTTGTGGACTGGTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS TCA 72 bp | ACAAGGCACAATGTGCTCAAACCATGTGAGGTCGGTTaGACAGTTCAGAGCCAAGCCGTGGGACGTGATGTG | + |
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Preference number: 6 (lower is better) Translates to: TRHNVLKPCEVG*TVQSQAVGRDV Trigger: CACATCACGTCCCACGGCTTGGCTCTGAACTGTTCAACCGACCTCACATGGTTTGAGCACATTGTGCCTTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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| CDS GCA 72 bp | GTGACTCCAGTTCCAACCAGTCCACAAGGCACAATGTaGTCAAACCATGTGAGGTCGGTTGAACAGTTCAGA | + |
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Preference number: 6 (lower is better) Translates to: VTPVPTSPQGTM*SNHVRSVEQFR Trigger: TCTGAACTGTTCAACCGACCTCACATGGTTTGAGCACATTGTGCCTTGTGGACTGGTTGGAACTGGAGTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032967.4 |
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