Pregenerated sensors for LIPO4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079344Ensembl transcript IDs: ENSMUST00000143522.9
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTCTCAATTCAGAGAAAACTGACATAAGTGACTTTCTCAAACAGTaGCTGGTTCACACAGGTGGTGTGACAGGGGAGGTTTGCAATGAG | + |
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Preference number: 1 (lower is better) Translates to: SLNSEKTDISDFLKQ*LVHTGGVTGEVCNE Trigger: CTCATTGCAAACCTCCCCTGTCACACCACCTGTGTGAACCAGGCACTGTTTGAGAAAGTCACTTATGTCAGTTTTCTCTGAATTGAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| 3UTR TCA 90 bp | CAGGGGAGGTTTGCAATGAGACTAGTGACTAAGACATGTGGAATCTaGGCAACAAGATTGACTGTCCTTCTTGAACCTGGGTTCGAATTT | + |
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Preference number: 1 (lower is better) Translates to: QGRFAMRLVTKTCGI*ATRLTVLLEPGFEF Trigger: AAATTCGAACCCAGGTTCAAGAAGGACAGTCAATCTTGTTGCTCAGATTCCACATGTCTTAGTCACTAGTCTCATTGCAAACCTCCCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| 3UTR-3UTR CCA 90 bp | GGAAGATTTAACATAGTCCAAGCCAATAAAGTAATACACCATCCCATAAATGGACCTGGTTCACACAGGTaGTGTGACAGGGGAGGTTTG | + |
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Preference number: 2 (lower is better) Translates to: GRFNIVQANKVIHHPINGPGSHR*CDRGGL Trigger: CAAACCTCCCCTGTCACACCACCTGTGTGAACCAGG...TCCATTTATGGGATGGTGTATTACTTTATTGGCTTGGACTATGTTAAATCTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| 3UTR-3UTR CCA 90 bp | CAATTTGTGTTGCAAGGAGAATTCAAAATACCATATTATTCACGGGCTTCAATGTGTGATAGCACAGTATaGGCCAGGCCTCTTCCTTTA | + |
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Preference number: 2 (lower is better) Translates to: QFVLQGEFKIPYYSRASMCDSTV*ARPLPL Trigger: TAAAGGAAGAGGCCTGGCCCATACTGTGCTATCACA...CATTGAAGCCCGTGAATAATATGGTATTTTGAATTCTCCTTGCAACACAAATTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| 3UTR-3UTR GCA 90 bp | TTGAGACTGGCCATGGTTACTCTTTATATTGTCCAAACTGTGCACATAATAATTATCTGTTCTTCAGATTaGATCATGTGTGATAGCACA | + |
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Preference number: 2 (lower is better) Translates to: LRLAMVTLYIVQTVHIIIICSSD*IMCDST Trigger: TGTGCTATCACACATGATGCAATCTGAAGAACAGAT...AATTATTATGTGCACAGTTTGGACAATATAAAGAGTAACCATGGCCAGTCTCAA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| 3UTR GCA 72 bp | TCAGAGAAAACTGACATAAGTGACTTTCTCAAACAGTaGCTGGTTCACACAGGTGGTGTGACAGGGGAGGTT | + |
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Preference number: 3 (lower is better) Translates to: SEKTDISDFLKQ*LVHTGGVTGEV Trigger: AACCTCCCCTGTCACACCACCTGTGTGAACCAGGCACTGTTTGAGAAAGTCACTTATGTCAGTTTTCTCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| 3UTR TCA 72 bp | TTTGCAATGAGACTAGTGACTAAGACATGTGGAATCTaGGCAACAAGATTGACTGTCCTTCTTGAACCTGGG | + |
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Preference number: 3 (lower is better) Translates to: FAMRLVTKTCGI*ATRLTVLLEPG Trigger: CCCAGGTTCAAGAAGGACAGTCAATCTTGTTGCTCAGATTCCACATGTCTTAGTCACTAGTCTCATTGCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| 3UTR TCA 72 bp | GAGAATTCAAAATACCATATTATTCACGGGCTTCAATaGCTAATCAATCCTGTGGGTTATTTTCAACAACTC | + |
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Preference number: 3 (lower is better) Translates to: ENSKYHIIHGLQ*LINPVGYFQQL Trigger: GAGTTGTTGAAAATAACCCACAGGATTGATTAGTCATTGAAGCCCGTGAATAATATGGTATTTTGAATTCTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS-3UTR GCA 90 bp | TTGAGACTGGCCATGGTTACTCTTTATATTGTCCAAACTGTGCACATAATAATTGGTCACATGTTTCTTTaGCCAGGTACTTCCTCTACT | + |
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Preference number: 4 (lower is better) Translates to: LRLAMVTLYIVQTVHIIIGHMFL*PGTSST Trigger: AGTAGAGGAAGTACCTGGGCAAAGAAACATGTGACC...AATTATTATGTGCACAGTTTGGACAATATAAAGAGTAACCATGGCCAGTCTCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS-3UTR TCA 90 bp | ATGAAACGTATTATGATCTGTTCTTCAGATTGCATCATGTGTGATAGCACAGTAGCAAGCAAGCCATGCTaGCAAAATACTACCATCTTT | + |
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Preference number: 4 (lower is better) Translates to: MKRIMICSSDCIMCDSTVASKPC*QNTTIF Trigger: AAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGC...TACTGTGCTATCACACATGATGCAATCTGAAGAACAGATCATAATACGTTTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS-3UTR TCA 90 bp | CAATTTGTGTTGCAAGGAGAATTCAAAATACCATATTATTCACGGGCTTCAATGTTGCATATTCAGAGATaGACTTCCCCAATCATAAGC | + |
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Preference number: 4 (lower is better) Translates to: QFVLQGEFKIPYYSRASMLHIQR*TSPIIS Trigger: GCTTATGATTGGGGAAGTTCATCTCTGAATATGCAA...CATTGAAGCCCGTGAATAATATGGTATTTTGAATTCTCCTTGCAACACAAATTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS-3UTR GCA 90 bp | TTTGTGTTGCAAGGAGAATTCAAAATACCATATTATTCACGGGCTTCAATGACTCATAAGCCTGAAGTATaGCACTTCTTCTTATCTGAT | + |
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Preference number: 4 (lower is better) Translates to: FVLQGEFKIPYYSRASMTHKPEV*HFFLSD Trigger: ATCAGATAAGAAGAAGTGGCATACTTCAGGCTTATG...AGTCATTGAAGCCCGTGAATAATATGGTATTTTGAATTCTCCTTGCAACACAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS-3UTR CCA 90 bp | TTTGTGTTGCAAGGAGAATTCAAAATACCATATTATTCACGGGCTTCAATGACTAATTTTCCAAGTAGATaGATAAGGCACATTGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: FVLQGEFKIPYYSRASMTNFPSR*IRHIVL Trigger: GAGAACAATGTGCCTTATCCATCTACTTGGAAAATT...AGTCATTGAAGCCCGTGAATAATATGGTATTTTGAATTCTCCTTGCAACACAAA 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS TCA 90 bp | AGTTGCAAGCAAGCCATGCTGACAAAATACTACCATCTTTGGGGCTaGACTATTAGCATTGTTCTTCCCATGAGGAATTCGGTTAATTGG | + |
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Preference number: 5 (lower is better) Translates to: SCKQAMLTKYYHLWG*TISIVLPMRNSVNW Trigger: CCAATTAACCGAATTCCTCATGGGAAGAACAATGCTAATAGTTCAGCCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS-3UTR CAA 90 bp | TTTGTGTTGCAAGGAGAATTCAAAATACCATATTATTCACGGGCTTCAATGACTCTGTTGTCAGGAAGATaGGAAACCCATGCACCAGGA | + |
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Preference number: 5 (lower is better) Translates to: FVLQGEFKIPYYSRASMTLLSGR*ETHAPG Trigger: TCCTGGTGCATGGGTTTCCAATCTTCCTGACAACAG...AGTCATTGAAGCCCGTGAATAATATGGTATTTTGAATTCTCCTTGCAACACAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS-3UTR CAA 90 bp | ATGAAACGTATTATGATCTGTTCTTCAGATTGCATCATGTGTGATAGCACAGTAGGGTCACATGTTTCTTaGCCCAGGTACTTCCTCTAC | + |
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Preference number: 5 (lower is better) Translates to: MKRIMICSSDCIMCDSTVGSHVS*PRYFLY Trigger: GTAGAGGAAGTACCTGGGCAAAGAAACATGTGACCC...TACTGTGCTATCACACATGATGCAATCTGAAGAACAGATCATAATACGTTTCAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS-3UTR CAA 90 bp | GGAAGATTTAACATAGTCCAAGCCAATAAAGTAATACACCATCCCATAAATGGATCACCAAAGAGGACCTaGATAGTCGTTGGAGTGAGG | + |
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Preference number: 5 (lower is better) Translates to: GRFNIVQANKVIHHPINGSPKRT*IVVGVR Trigger: CCTCACTCCAACGACTATCAAGGTCCTCTTTGGTGA...TCCATTTATGGGATGGTGTATTACTTTATTGGCTTGGACTATGTTAAATCTTCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS-3UTR CAA 90 bp | TTGAGACTGGCCATGGTTACTCTTTATATTGTCCAAACTGTGCACATAATAATTGATGTTCCTGCTAGATaGAGCTTTACATACACATCA | + |
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Preference number: 5 (lower is better) Translates to: LRLAMVTLYIVQTVHIIIDVPAR*SFTYTS Trigger: TGATGTGTATGTAAAGCTCAATCTAGCAGGAACATC...AATTATTATGTGCACAGTTTGGACAATATAAAGAGTAACCATGGCCAGTCTCAA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS-3UTR CAA 90 bp | ATGAAACGTATTATGATCTGTTCTTCAGATTGCATCATGTGTGATAGCACAGTATCTTTAGAATCTGTGTaGAGGGTCACATGTTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: MKRIMICSSDCIMCDSTVSLESV*RVTCFF Trigger: AAAGAAACATGTGACCCTCAACACAGATTCTAAAGA...TACTGTGCTATCACACATGATGCAATCTGAAGAACAGATCATAATACGTTTCAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS-3UTR CAA 90 bp | TTTGTGTTGCAAGGAGAATTCAAAATACCATATTATTCACGGGCTTCAATGACTGTGAGGTTGTGGATTTaGGGTTTCAAAATTTCAACA | + |
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Preference number: 5 (lower is better) Translates to: FVLQGEFKIPYYSRASMTVRLWI*GFKIST Trigger: TGTTGAAATTTTGAAACCCAAAATCCACAACCTCAC...AGTCATTGAAGCCCGTGAATAATATGGTATTTTGAATTCTCCTTGCAACACAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS CAA 72 bp | TCTGCTAGGATGAAGGCCAGGCTGTTGTCAGGAAGATaGGAAACCCATGCACCAGGAGTTGCAAGCAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: SARMKARLLSGR*ETHAPGVASKP Trigger: TGGCTTGCTTGCAACTCCTGGTGCATGGGTTTCCAATCTTCCTGACAACAGCCTGGCCTTCATCCTAGCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS CAA 90 bp | AGGCCAGGCTGTTGTCAGGAAGATTGGAAACCCATGCACCAGGAGTaGCAAGCAAGCCATGCTGACAAAATACTACCATCTTTGGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: RPGCCQEDWKPMHQE*QASHADKILPSLGL Trigger: CAGCCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACTCCTGGTGCATGGGTTTCCAATCTTCCTGACAACAGCCTGGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS TCA 72 bp | GAAACCCATGCACCAGGAGTTGCAAGCAAGCCATGCTaGCAAAATACTACCATCTTTGGGGCTGAACTATTA | + |
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Preference number: 6 (lower is better) Translates to: ETHAPGVASKPC*QNTTIFGAELL Trigger: TAATAGTTCAGCCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACTCCTGGTGCATGGGTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS GCA 72 bp | ACAACCAGCAGTGACCAAGTTAATATCGCATACATATaGACCCACCTCGCTGGAAACTACGGTAGGCAAAAA | + |
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Preference number: 6 (lower is better) Translates to: TTSSDQVNIAYI*THLAGNYGRQK Trigger: TTTTTGCCTACCGTAGTTTCCAGCGAGGTGGGTGCATATGTATGCGATATTAACTTGGTCACTGCTGGTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS TCA 72 bp | CAAGCCATGCTGACAAAATACTACCATCTTTGGGGCTaGACTATTAGCATTGTTCTTCCCATGAGGAATTCG | + |
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Preference number: 6 (lower is better) Translates to: QAMLTKYYHLWG*TISIVLPMRNS Trigger: CGAATTCCTCATGGGAAGAACAATGCTAATAGTTCAGCCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS CCA 72 bp | AAATTCTTTTTCACCAAAGAGGACCTTGATAGTCGTTaGAGTGAGGTAAGATGTAAGGCGGGCAATACCTTT | + |
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Preference number: 6 (lower is better) Translates to: KFFFTKEDLDSR*SEVRCKAGNTF Trigger: AAAGGTATTGCCCGCCTTACATCTTACCTCACTCCAACGACTATCAAGGTCCTCTTTGGTGAAAAAGAATTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS CAA 72 bp | GGTTCCTTGAGAATGGCCAATATAGTAAATCTGCTTTaGTCCTGTTTTATCCAGAATGAAATTAATGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: GSLRMANIVNLL*SCFIQNEINGG Trigger: GCCACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTATATTGGCCATTCTCAAGGAACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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| CDS CAA 72 bp | TCAGGAATAGTCTTAAGGTATGTGAGGTTGTGGATTTaGGGTTTCAAAATTTCAACATCTTCTGGGTCAGAT | + |
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Preference number: 6 (lower is better) Translates to: SGIVLRYVRLWI*GFKISTSSGSD Trigger: ATCTGACCCAGAAGATGTTGAAATTTTGAAACCCAAAATCCACAACCTCACATACCTTAAGACTATTCCTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000143522.9 |
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