Pregenerated sensors for LIPO3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024766Ensembl transcript IDs: ENSMUST00000025694.7, ENSMUST00000112508.9
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTCTCAATTCAGAGAACACTGACATAAGTGACTTTCTCAAACAGTaGTTGGTTCACACAGGTGGTGTGACAGGGGAGGTTTGCAATGAG | + |
|
Preference number: 1 (lower is better) Translates to: SLNSENTDISDFLKQ*LVHTGGVTGEVCNE Trigger: CTCATTGCAAACCTCCCCTGTCACACCACCTGTGTGAACCAAGCACTGTTTGAGAAAGTCACTTATGTCAGTGTTCTCTGAATTGAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR TCA 90 bp | CAGGGGAGGTTTGCAATGAGACTAGTGACTAATACTTGTGGAATCTaGGCAACAAGATTGACTGTCCTTCTTGAGCCTGGGTTCGAATTT | + |
|
Preference number: 1 (lower is better) Translates to: QGRFAMRLVTNTCGI*ATRLTVLLEPGFEF Trigger: AAATTCGAACCCAGGCTCAAGAAGGACAGTCAATCTTGTTGCTCAGATTCCACAAGTATTAGTCACTAGTCTCATTGCAAACCTCCCCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR-3UTR TCA 90 bp | CTTTCTCAAACAGTGCTTGGTTCACACAGGTGGTGTGACAGGGGAGGTTTGCAATCTGAGCAACAAGATTaGCTGTCCTTCTTGAGCCTG | + |
|
Preference number: 2 (lower is better) Translates to: LSQTVLGSHRWCDRGGLQSEQQD*LSFLSL Trigger: CAGGCTCAAGAAGGACAGTCAATCTTGTTGCTCAGA...TTGCAAACCTCCCCTGTCACACCACCTGTGTGAACCAAGCACTGTTTGAGAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR-3UTR TCA 90 bp | CTTTCTCAAACAGTGCTTGGTTCACACAGGTGGTGTGACAGGGGAGGTTTGCAAATTGACTGTCCTTCTTaGGCCTGGGTTCGAATTTAT | + |
|
Preference number: 2 (lower is better) Translates to: LSQTVLGSHRWCDRGGLQIDCPS*AWVRIY Trigger: ATAAATTCGAACCCAGGCTCAAGAAGGACAGTCAAT...TTGCAAACCTCCCCTGTCACACCACCTGTGTGAACCAAGCACTGTTTGAGAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR CAA 90 bp | CTCAATTCAGAGAACACTGACATAAGTGACTTTCTCAAACAGTGCTaGGTTCACACAGGTGGTGTGACAGGGGAGGTTTGCAATGAGACT | + |
|
Preference number: 2 (lower is better) Translates to: LNSENTDISDFLKQC*VHTGGVTGEVCNET Trigger: AGTCTCATTGCAAACCTCCCCTGTCACACCACCTGTGTGAACCAAGCACTGTTTGAGAAAGTCACTTATGTCAGTGTTCTCTGAATTGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR-3UTR CCA 90 bp | TTGTATTCAATTTCTGTTACAAGGAGAATTCAAAATACCCTATTCAGGGGCTTCCTTGGTTCACACAGGTaGTGTGACAGGGGAGGTTTG | + |
|
Preference number: 2 (lower is better) Translates to: LYSISVTRRIQNTLFRGFLGSHR*CDRGGL Trigger: CAAACCTCCCCTGTCACACCACCTGTGTGAACCAAG...GAAGCCCCTGAATAGGGTATTTTGAATTCTCCTTGTAACAGAAATTGAATACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR-3UTR TCA 90 bp | TGTATTCAATTTCTGTTACAAGGAGAATTCAAAATACCCTATTCAGGGGCTTCATCTGAGCAACAAGATTaGCTGTCCTTCTTGAGCCTG | + |
|
Preference number: 2 (lower is better) Translates to: CIQFLLQGEFKIPYSGASSEQQD*LSFLSL Trigger: CAGGCTCAAGAAGGACAGTCAATCTTGTTGCTCAGA...TGAAGCCCCTGAATAGGGTATTTTGAATTCTCCTTGTAACAGAAATTGAATACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR-3UTR GCA 90 bp | TGTATTCAATTTCTGTTACAAGGAGAATTCAAAATACCCTATTCAGGGGCTTCAGACTTTCTCAAACAGTaGTTGGTTCACACAGGTGGT | + |
|
Preference number: 2 (lower is better) Translates to: CIQFLLQGEFKIPYSGASDFLKQ*LVHTGG Trigger: ACCACCTGTGTGAACCAAGCACTGTTTGAGAAAGTC...TGAAGCCCCTGAATAGGGTATTTTGAATTCTCCTTGTAACAGAAATTGAATACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR-3UTR TCA 90 bp | TGTATTCAATTTCTGTTACAAGGAGAATTCAAAATACCCTATTCAGGGGCTTCAAATACTTGTGGAATCTaGGCAACAAGATTGACTGTC | + |
|
Preference number: 2 (lower is better) Translates to: CIQFLLQGEFKIPYSGASNTCGI*ATRLTV Trigger: GACAGTCAATCTTGTTGCTCAGATTCCACAAGTATT...TGAAGCCCCTGAATAGGGTATTTTGAATTCTCCTTGTAACAGAAATTGAATACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR GCA 72 bp | TCAGAGAACACTGACATAAGTGACTTTCTCAAACAGTaGTTGGTTCACACAGGTGGTGTGACAGGGGAGGTT | + |
|
Preference number: 3 (lower is better) Translates to: SENTDISDFLKQ*LVHTGGVTGEV Trigger: AACCTCCCCTGTCACACCACCTGTGTGAACCAAGCACTGTTTGAGAAAGTCACTTATGTCAGTGTTCTCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR TCA 72 bp | ACTTTCTCAAACAGTGCTTGGTTCACACAGGTGGTGTaGCAGGGGAGGTTTGCAATGAGACTAGTGACTAAT | + |
|
Preference number: 3 (lower is better) Translates to: TFSNSAWFTQVV*QGRFAMRLVTN Trigger: ATTAGTCACTAGTCTCATTGCAAACCTCCCCTGTCACACCACCTGTGTGAACCAAGCACTGTTTGAGAAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR TCA 72 bp | TTTGCAATGAGACTAGTGACTAATACTTGTGGAATCTaGGCAACAAGATTGACTGTCCTTCTTGAGCCTGGG | + |
|
Preference number: 3 (lower is better) Translates to: FAMRLVTNTCGI*ATRLTVLLEPG Trigger: CCCAGGCTCAAGAAGGACAGTCAATCTTGTTGCTCAGATTCCACAAGTATTAGTCACTAGTCTCATTGCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR TCA 72 bp | TTGTGGAATCTGAGCAACAAGATTGACTGTCCTTCTTaGGCCTGGGTTCGAATTTATGAAGCTTTTATGATC | + |
|
Preference number: 3 (lower is better) Translates to: LWNLSNKIDCPS*AWVRIYEAFMI Trigger: GATCATAAAAGCTTCATAAATTCGAACCCAGGCTCAAGAAGGACAGTCAATCTTGTTGCTCAGATTCCACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR TCA 72 bp | CTTCTTGAGCCTGGGTTCGAATTTATGAAGCTTTTATaGTCTTTTCTTCAGATAGCATCATGTGTGATAGCA | + |
|
Preference number: 3 (lower is better) Translates to: LLEPGFEFMKLL*SFLQIASCVIA Trigger: TGCTATCACACATGATGCTATCTGAAGAAAAGATCATAAAAGCTTCATAAATTCGAACCCAGGCTCAAGAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR GCA 90 bp | CTTTCTCAAACAGTGCTTGGTTCACACAGGTGGTGTGACAGGGGAGGTTTGCAAGGCCACGTGTTTCTTTaGCCAGGTACTTCCTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: LSQTVLGSHRWCDRGGLQGHVFL*PGTSSA Trigger: AGCAGAGGAAGTACCTGGGCAAAGAAACACGTGGCC...TTGCAAACCTCCCCTGTCACACCACCTGTGTGAACCAAGCACTGTTTGAGAAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| 3UTR CAA 72 bp | GAGAACACTGACATAAGTGACTTTCTCAAACAGTGCTaGGTTCACACAGGTGGTGTGACAGGGGAGGTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: ENTDISDFLKQC*VHTGGVTGEVC Trigger: GCAAACCTCCCCTGTCACACCACCTGTGTGAACCAAGCACTGTTTGAGAAAGTCACTTATGTCAGTGTTCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR CCA 90 bp | CTTTCTCAAACAGTGCTTGGTTCACACAGGTGGTGTGACAGGGGAGGTTTGCAACGGCTCTTATTTAACTaGTCTGGAGAATATCCACCC | + |
|
Preference number: 4 (lower is better) Translates to: LSQTVLGSHRWCDRGGLQRLLFN*SGEYPP Trigger: GGGTGGATATTCTCCAGACCAGTTAAATAAGAGCCG...TTGCAAACCTCCCCTGTCACACCACCTGTGTGAACCAAGCACTGTTTGAGAAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR CCA 90 bp | CTTCAGATAGCATCATGTGTGATAGCACAGTATGGGCCAGGCCTCTTCCTTTATGAATTCTTTAGAATCTaGGTTGAGGGCCACGTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: LQIASCVIAQYGPGLFLYEFFRI*VEGHVF Trigger: AAACACGTGGCCCTCAACCCAGATTCTAAAGAATTC...ATAAAGGAAGAGGCCTGGCCCATACTGTGCTATCACACATGATGCTATCTGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR CCA 90 bp | CTTCAGATAGCATCATGTGTGATAGCACAGTATGGGCCAGGCCTCTTCCTTTATAGTAAACATGGCAGTTaGAACCTTCATGTCTTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: LQIASCVIAQYGPGLFLYSKHGS*NLHVFH Trigger: GTGGAAGACATGAAGGTTCCAACTGCCATGTTTACT...ATAAAGGAAGAGGCCTGGCCCATACTGTGCTATCACACATGATGCTATCTGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR TCA 90 bp | ATCTTTTCTTCAGATAGCATCATGTGTGATAGCACAGTATGGGCCAGGCCTCTTTTTTCTGCCAGTGTTTaGTTTGTTGCAAATGCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: IFSSDSIMCDSTVWARPLFSASV*FVANAP Trigger: TGGGGCATTTGCAACAAATCAAACACTGGCAGAAAA...AAGAGGCCTGGCCCATACTGTGCTATCACACATGATGCTATCTGAAGAAAAGAT 43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR GCA 90 bp | CTTCAGATAGCATCATGTGTGATAGCACAGTATGGGCCAGGCCTCTTCCTTTATCAGTGTTTGATTTGTTaGAAATGCCCCAATAGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: LQIASCVIAQYGPGLFLYQCLIC*KCPNSK Trigger: CTTGCTATTGGGGCATTTGCAACAAATCAAACACTG...ATAAAGGAAGAGGCCTGGCCCATACTGTGCTATCACACATGATGCTATCTGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR GCA 90 bp | TGTATTCAATTTCTGTTACAAGGAGAATTCAAAATACCCTATTCAGGGGCTTCAGGCCACGTGTTTCTTTaGCCAGGTACTTCCTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: CIQFLLQGEFKIPYSGASGHVFL*PGTSSA Trigger: AGCAGAGGAAGTACCTGGGCAAAGAAACACGTGGCC...TGAAGCCCCTGAATAGGGTATTTTGAATTCTCCTTGTAACAGAAATTGAATACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR CCA 90 bp | GAAGCTTTTATGATCTTTTCTTCAGATAGCATCATGTGTGATAGCACAGTATGGCGGCTCTTATTTAACTaGTCTGGAGAATATCCACCC | + |
|
Preference number: 4 (lower is better) Translates to: EAFMIFSSDSIMCDSTVWRLLFN*SGEYPP Trigger: GGGTGGATATTCTCCAGACCAGTTAAATAAGAGCCG...CCATACTGTGCTATCACACATGATGCTATCTGAAGAAAAGATCATAAAAGCTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR TCA 90 bp | GAAGCTTTTATGATCTTTTCTTCAGATAGCATCATGTGTGATAGCACAGTATGGTTTTCTGCCAGTGTTTaGTTTGTTGCAAATGCCCCA | + |
|
Preference number: 4 (lower is better) Translates to: EAFMIFSSDSIMCDSTVWFSASV*FVANAP Trigger: TGGGGCATTTGCAACAAATCAAACACTGGCAGAAAA...CCATACTGTGCTATCACACATGATGCTATCTGAAGAAAAGATCATAAAAGCTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR GCA 90 bp | AGTATGGGCCAGGCCTCTTCCTTTATTAGTATTTTAGGATTTCATCACTGTAAACAGTGTTTGATTTGTTaGAAATGCCCCAATAGCAAG | + |
|
Preference number: 4 (lower is better) Translates to: SMGQASSFISILGFHHCKQCLIC*KCPNSK Trigger: CTTGCTATTGGGGCATTTGCAACAAATCAAACACTG...TTTACAGTGATGAAATCCTAAAATACTAATAAAGGAAGAGGCCTGGCCCATACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR CCA 90 bp | TTGTATTCAATTTCTGTTACAAGGAGAATTCAAAATACCCTATTCAGGGGCTTCGAATTCTTTAGAATCTaGGTTGAGGGCCACGTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: LYSISVTRRIQNTLFRGFEFFRI*VEGHVF Trigger: AAACACGTGGCCCTCAACCCAGATTCTAAAGAATTC...GAAGCCCCTGAATAGGGTATTTTGAATTCTCCTTGTAACAGAAATTGAATACAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR CCA 90 bp | TGTATTCAATTTCTGTTACAAGGAGAATTCAAAATACCCTATTCAGGGGCTTCAAGTAAACATGGCAGTTaGAACCTTCATGTCTTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: CIQFLLQGEFKIPYSGASSKHGS*NLHVFH Trigger: GTGGAAGACATGAAGGTTCCAACTGCCATGTTTACT...TGAAGCCCCTGAATAGGGTATTTTGAATTCTCCTTGTAACAGAAATTGAATACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR CCA 90 bp | TTGTATTCAATTTCTGTTACAAGGAGAATTCAAAATACCCTATTCAGGGGCTTCTTGCATATTCAGAGATaGACTTCCCCAATCATAAGC | + |
|
Preference number: 4 (lower is better) Translates to: LYSISVTRRIQNTLFRGFLHIQR*TSPIIS Trigger: GCTTATGATTGGGGAAGTCCATCTCTGAATATGCAA...GAAGCCCCTGAATAGGGTATTTTGAATTCTCCTTGTAACAGAAATTGAATACAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR CAA 90 bp | CTTCAGATAGCATCATGTGTGATAGCACAGTATGGGCCAGGCCTCTTCCTTTATCTTTTCTGCCAGTGTTaGATTTGTTGCAAATGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: LQIASCVIAQYGPGLFLYLFCQC*ICCKCP Trigger: GGGGCATTTGCAACAAATCAAACACTGGCAGAAAAG...ATAAAGGAAGAGGCCTGGCCCATACTGTGCTATCACACATGATGCTATCTGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR CAA 90 bp | ATCTTTTCTTCAGATAGCATCATGTGTGATAGCACAGTATGGGCCAGGCCTCTTCTTTTCTGCCAGTGTTaGATTTGTTGCAAATGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: IFSSDSIMCDSTVWARPLLFCQC*ICCKCP Trigger: GGGGCATTTGCAACAAATCAAACACTGGCAGAAAAG...AAGAGGCCTGGCCCATACTGTGCTATCACACATGATGCTATCTGAAGAAAAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS TCA 90 bp | TGTTGCAAGCAAGCCATGCTGACAAAATACTACCATCTTTGGGGCTaGACTATTAGCATTGTTCTTCCCATGAGGAATTCGGTTAATTGG | + |
|
Preference number: 5 (lower is better) Translates to: CCKQAMLTKYYHLWG*TISIVLPMRNSVNW Trigger: CCAATTAACCGAATTCCTCATGGGAAGAACAATGCTAATAGTTCAGCCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS GCA 90 bp | AATGTTGAGTTTAATCTTTTCTGCCAGTGTTTGATTTGTTGCAAATaGCCCAATAGCAAGAAGGGTTCCTTGAGAATGGCCAATGTAGTA | + |
|
Preference number: 5 (lower is better) Translates to: NVEFNLFCQCLICCK*PNSKKGSLRMANVV Trigger: TACTACATTGGCCATTCTCAAGGAACCCTTCTTGCTATTGGGGCATTTGCAACAAATCAAACACTGGCAGAAAAGATTAAACTCAACATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR CAA 90 bp | AGTATGGGCCAGGCCTCTTCCTTTATTAGTATTTTAGGATTTCATCACTGTAAAAGTCTGATTGTAGTGTaGCATATTCAGAGATGGACT | + |
|
Preference number: 5 (lower is better) Translates to: SMGQASSFISILGFHHCKSLIVV*HIQRWT Trigger: AGTCCATCTCTGAATATGCAACACTACAATCAGACT...TTTACAGTGATGAAATCCTAAAATACTAATAAAGGAAGAGGCCTGGCCCATACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS-3UTR CAA 90 bp | GAAGCTTTTATGATCTTTTCTTCAGATAGCATCATGTGTGATAGCACAGTATGGAGTCTGATTGTAGTGTaGCATATTCAGAGATGGACT | + |
|
Preference number: 5 (lower is better) Translates to: EAFMIFSSDSIMCDSTVWSLIVV*HIQRWT Trigger: AGTCCATCTCTGAATATGCAACACTACAATCAGACT...CCATACTGTGCTATCACACATGATGCTATCTGAAGAAAAGATCATAAAAGCTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS CAA 72 bp | TCTGCTAGGATGAAGGCCAGGCTGTTGACAGGCGGATaGGAAACCCATGCACCAGGTGTTGCAAGCAAGCCA | + |
|
Preference number: 6 (lower is better) Translates to: SARMKARLLTGG*ETHAPGVASKP Trigger: TGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS GCA 72 bp | GAAGGCCAGGCTGTTGACAGGCGGATTGGAAACCCATaGACCAGGTGTTGCAAGCAAGCCATGCTGACAAAA | + |
|
Preference number: 6 (lower is better) Translates to: EGQAVDRRIGNP*TRCCKQAMLTK Trigger: TTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS GCA 72 bp | GTTGACAGGCGGATTGGAAACCCATGCACCAGGTGTTaGAAGCAAGCCATGCTGACAAAATACTACCATCTT | + |
|
Preference number: 6 (lower is better) Translates to: VDRRIGNPCTRC*KQAMLTKYYHL Trigger: AAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTCCAATCCGCCTGTCAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS TCA 72 bp | GAAACCCATGCACCAGGTGTTGCAAGCAAGCCATGCTaGCAAAATACTACCATCTTTGGGGCTGAACTATTA | + |
|
Preference number: 6 (lower is better) Translates to: ETHAPGVASKPC*QNTTIFGAELL Trigger: TAATAGTTCAGCCCCAAAGATGGTAGTATTTTGTCAGCATGGCTTGCTTGCAACACCTGGTGCATGGGTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS CCA 72 bp | AGCTTTACATACACATCAAGGCGGCTCTTATTTAACTaGTCTGGAGAATATCCACCCATCGATCCCATGATA | + |
|
Preference number: 6 (lower is better) Translates to: SFTYTSRRLLFN*SGEYPPIDPMI Trigger: TATCATGGGATCGATGGGTGGATATTCTCCAGACCAGTTAAATAAGAGCCGCCTTGATGTGTATGTAAAGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS CAA 72 bp | TCAAAACTAAAATCCCAGAATTCTTTAGAATCTGGGTaGAGGGCCACGTGTTTCTTTGCCCAGGTACTTCCT | + |
|
Preference number: 6 (lower is better) Translates to: SKLKSQNSLESG*RATCFFAQVLP Trigger: AGGAAGTACCTGGGCAAAGAAACACGTGGCCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAGTTTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS GCA 72 bp | TTTAATCTTTTCTGCCAGTGTTTGATTTGTTGCAAATaGCCCAATAGCAAGAAGGGTTCCTTGAGAATGGCC | + |
|
Preference number: 6 (lower is better) Translates to: FNLFCQCLICCK*PNSKKGSLRMA Trigger: GGCCATTCTCAAGGAACCCTTCTTGCTATTGGGGCATTTGCAACAAATCAAACACTGGCAGAAAAGATTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS CAA 90 bp | CATGTCTTCCACATTGTATACAGGAGGAGTAGTCTGATTGTAGTGTaGCATATTCAGAGATGGACTTCCCCAATCATAAGCCTGAAGTAT | + |
|
Preference number: 6 (lower is better) Translates to: HVFHIVYRRSSLIVV*HIQRWTSPIISLKY Trigger: ATACTTCAGGCTTATGATTGGGGAAGTCCATCTCTGAATATGCAACACTACAATCAGACTACTCCTCCTGTATACAATGTGGAAGACATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS GCA 72 bp | GTTGAGTTTAATCTTTTCTGCCAGTGTTTGATTTGTTaGAAATGCCCCAATAGCAAGAAGGGTTCCTTGAGA | + |
|
Preference number: 6 (lower is better) Translates to: VEFNLFCQCLIC*KCPNSKKGSLR Trigger: TCTCAAGGAACCCTTCTTGCTATTGGGGCATTTGCAACAAATCAAACACTGGCAGAAAAGATTAAACTCAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS CAA 72 bp | TCAGGAATAGTCTTAAGGTATGTGAGGTTGTGGATTTaGGGTTTCAAAATTTCAACATCTTCTGGGTCAGAC | + |
|
Preference number: 6 (lower is better) Translates to: SGIVLRYVRLWI*GFKISTSSGSD Trigger: GTCTGACCCAGAAGATGTTGAAATTTTGAAACCCAAAATCCACAACCTCACATACCTTAAGACTATTCCTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||
| CDS CAA 72 bp | GGTTCCTTGAGAATGGCCAATGTAGTAAATCTGCTTTaGTCCTGTTTTATCCAGAATGAAATTAATGGTAGC | + |
|
Preference number: 6 (lower is better) Translates to: GSLRMANVVNLL*SCFIQNEINGS Trigger: GCTACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025694.7 ENSMUST00000112508.9 |
||