Pregenerated sensors for LIPO2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000087303Ensembl transcript IDs: ENSMUST00000147153.4
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTCTCAATTTAGAGAAAACTGACATAAGTGACTTTCTCAAACAGTaGCTGGTTCACACAGGTGGTGTGACAGGGGAGGTTTGCAATGAG | + |
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Preference number: 1 (lower is better) Translates to: SLNLEKTDISDFLKQ*LVHTGGVTGEVCNE Trigger: CTCATTGCAAACCTCCCCTGTCACACCACCTGTGTGAACCAGGCACTGTTTGAGAAAGTCACTTATGTCAGTTTTCTCTAAATTGAGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| 3UTR GCA 90 bp | CCTGGGTTTGAATTTATGAAACGTATTATGATCTGTTATTCAGATTaGATCATGTGTGATAGCACAGTATGGGCCAGGCCTCTTCCTTTA | + |
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Preference number: 1 (lower is better) Translates to: PGFEFMKRIMICYSD*IMCDSTVWARPLPL Trigger: TAAAGGAAGAGGCCTGGCCCATACTGTGCTATCACACATGATGCAATCTGAATAACAGATCATAATACGTTTCATAAATTCAAACCCAGG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| 3UTR-3UTR TCA 90 bp | ATTTGTGTTGCAAGGAGAATTCAAAATACCATATTATTCACGGGCTTCAATGACAAGACATGTGGAATCTaGGCAACAAGATTGACTGTC | + |
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Preference number: 2 (lower is better) Translates to: ICVARRIQNTILFTGFNDKTCGI*ATRLTV Trigger: GACAGTCAATCTTGTTGCTCAGATTCCACATGTCTT...GTCATTGAAGCCCGTGAATAATATGGTATTTTGAATTCTCCTTGCAACACAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| 3UTR-3UTR GCA 90 bp | GTTCAATTTGTGTTGCAAGGAGAATTCAAAATACCATATTATTCACGGGCTTCAATCTGTTATTCAGATTaGATCATGTGTGATAGCACA | + |
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Preference number: 2 (lower is better) Translates to: VQFVLQGEFKIPYYSRASICYSD*IMCDST Trigger: TGTGCTATCACACATGATGCAATCTGAATAACAGAT...TGAAGCCCGTGAATAATATGGTATTTTGAATTCTCCTTGCAACACAAATTGAAC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| 3UTR TCA 72 bp | TTTGCAATGAGACTAGTGACTAAGACATGTGGAATCTaGGCAACAAGATTGACTGTCCTTCTCGAACCTGGG | + |
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Preference number: 3 (lower is better) Translates to: FAMRLVTKTCGI*ATRLTVLLEPG Trigger: CCCAGGTTCGAGAAGGACAGTCAATCTTGTTGCTCAGATTCCACATGTCTTAGTCACTAGTCTCATTGCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| 3UTR GCA 72 bp | GAATTTATGAAACGTATTATGATCTGTTATTCAGATTaGATCATGTGTGATAGCACAGTATGGGCCAGGCCT | + |
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Preference number: 3 (lower is better) Translates to: EFMKRIMICYSD*IMCDSTVWARP Trigger: AGGCCTGGCCCATACTGTGCTATCACACATGATGCAATCTGAATAACAGATCATAATACGTTTCATAAATTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| 3UTR TCA 72 bp | AGCAACAAGATTGACTGTCCTTCTCGAACCTGGGTTTaGATTTATGAAACGTATTATGATCTGTTATTCAGA | + |
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Preference number: 3 (lower is better) Translates to: SNKIDCPSRTWV*IYETYYDLLFR Trigger: TCTGAATAACAGATCATAATACGTTTCATAAATTCAAACCCAGGTTCGAGAAGGACAGTCAATCTTGTTGCT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| 3UTR TCA 72 bp | GAGAATTCAAAATACCATATTATTCACGGGCTTCAATaGCTGATCAATCCTGTGGGTTATTTTCAACAACTC | + |
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Preference number: 3 (lower is better) Translates to: ENSKYHIIHGLQ*LINPVGYFQQL Trigger: GAGTTGTTGAAAATAACCCACAGGATTGATCAGTCATTGAAGCCCGTGAATAATATGGTATTTTGAATTCTC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS-3UTR GCA 90 bp | GTTCAATTTGTGTTGCAAGGAGAATTCAAAATACCATATTATTCACGGGCTTCAGGTCACGTGTTTCTTTaGCCAGGTACTTCCTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: VQFVLQGEFKIPYYSRASGHVFL*PGTSSA Trigger: AGCAGAGGAAGTACCTGGGCAAAGAAACACGTGACC...TGAAGCCCGTGAATAATATGGTATTTTGAATTCTCCTTGCAACACAAATTGAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS-3UTR CCA 90 bp | ACTGACATAAGTGACTTTCTCAAACAGTGCCTGGTTCACACAGGTGGTGTGACAGGTGCGAAATACCTTTaGAATGTTGAACACTATAAA | + |
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Preference number: 4 (lower is better) Translates to: TDISDFLKQCLVHTGGVTGAKYL*NVEHYK Trigger: TTTATAGTGTTCAACATTCCAAAGGTATTTCGCACC...TGTCACACCACCTGTGTGAACCAGGCACTGTTTGAGAAAGTCACTTATGTCAGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS-3UTR TCA 90 bp | AGTATGGGCCAGGCCTCTTCCTTTACTAGTATTTTAGGATTTCATTACTCTAAATCGCTAACATTCATGTaGGCTTCAGGATTCTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: SMGQASSFTSILGFHYSKSLTFM*ASGFFF Trigger: AAAGAAGAATCCTGAAGCTCACATGAATGTTAGCGA...TTTAGAGTAATGAAATCCTAAAATACTAGTAAAGGAAGAGGCCTGGCCCATACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS-3UTR TCA 90 bp | ATTTGTGTTGCAAGGAGAATTCAAAATACCATATTATTCACGGGCTTCAATGACGCAAGCAAGCCATGCTaGCAAAATACTACCATTTTG | + |
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Preference number: 4 (lower is better) Translates to: ICVARRIQNTILFTGFNDASKPC*QNTTIL Trigger: CAAAATGGTAGTATTTTGTCAGCATGGCTTGCTTGC...GTCATTGAAGCCCGTGAATAATATGGTATTTTGAATTCTCCTTGCAACACAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS-3UTR CCA 90 bp | CATGTGTACATGTTCACACACGTAATCGCACATATAGGTTTCTTTATTATCATGTCGCATATTCAGAGATaGACTTCCCCAATCATAAGC | + |
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Preference number: 4 (lower is better) Translates to: HVYMFTHVIAHIGFFIIMSHIQR*TSPIIS Trigger: GCTTATGATTGGGGAAGTCCATCTCTGAATATGCGA...CATGATAATAAAGAAACCTATATGTGCGATTACGTGTGTGAACATGTACACATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS-3UTR GCA 90 bp | AGTATGGGCCAGGCCTCTTCCTTTACTAGTATTTTAGGATTTCATTACTCTAAACAGTTTTTGATTTGTTaGAAATGCCCCAATAGCAAG | + |
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Preference number: 4 (lower is better) Translates to: SMGQASSFTSILGFHYSKQFLIC*KCPNSK Trigger: CTTGCTATTGGGGCATTTGCAACAAATCAAAAACTG...TTTAGAGTAATGAAATCCTAAAATACTAGTAAAGGAAGAGGCCTGGCCCATACT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS-3UTR CCA 90 bp | AGTATGGGCCAGGCCTCTTCCTTTACTAGTATTTTAGGATTTCATTACTCTAAAATTTTACCAAGTACTTaGATAAGGCACATTGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: SMGQASSFTSILGFHYSKILPST*IRHIVL Trigger: GAGAACAATGTGCCTTATCCAAGTACTTGGTAAAAT...TTTAGAGTAATGAAATCCTAAAATACTAGTAAAGGAAGAGGCCTGGCCCATACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS-3UTR CCA 90 bp | GTTCAATTTGTGTTGCAAGGAGAATTCAAAATACCATATTATTCACGGGCTTCAAGGAATTCGGTTAATTaGAAGAATGTAACCATCATC | + |
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Preference number: 4 (lower is better) Translates to: VQFVLQGEFKIPYYSRASRNSVN*KNVTII Trigger: GATGATGGTTACATTCTTCCAATTAACCGAATTCCT...TGAAGCCCGTGAATAATATGGTATTTTGAATTCTCCTTGCAACACAAATTGAAC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS-3UTR CCA 90 bp | GTTCAATTTGTGTTGCAAGGAGAATTCAAAATACCATATTATTCACGGGCTTCAAGGTATGTGAGGTTGTaGATTTTGGGTTTCAAAATT | + |
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Preference number: 4 (lower is better) Translates to: VQFVLQGEFKIPYYSRASRYVRL*ILGFKI Trigger: AATTTTGAAACCCAAAATCCACAACCTCACATACCT...TGAAGCCCGTGAATAATATGGTATTTTGAATTCTCCTTGCAACACAAATTGAAC 34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS-3UTR CAA 90 bp | CATGTGTACATGTTCACACACGTAATCGCACATATAGGTTTCTTTATTATCATGGGGTCACGTGTTTCTTaGCCCAGGTACTTCCTCTGC | + |
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Preference number: 5 (lower is better) Translates to: HVYMFTHVIAHIGFFIIMGSRVS*PRYFLC Trigger: GCAGAGGAAGTACCTGGGCAAAGAAACACGTGACCC...CATGATAATAAAGAAACCTATATGTGCGATTACGTGTGTGAACATGTACACATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS-3UTR CAA 90 bp | AAGGAACTTATAACATGTGTACATGTTCACACACGTAATCGCACATATAGGTTTGTGAAGAAGTTAATATaGCAAACACATGCACCCACC | + |
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Preference number: 5 (lower is better) Translates to: KELITCVHVHTRNRTYRFVKKLI*QTHAPT Trigger: GGTGGGTGCATGTGTTTGCAATATTAACTTCTTCAC...AAACCTATATGTGCGATTACGTGTGTGAACATGTACACATGTTATAAGTTCCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS CAA 72 bp | TCTGCTAGGATGAAGGCCAGGCTGTTGACAGGCGGATaGGAAACCCATGCACCAGGAGTTGCAAGCAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: SARMKARLLTGG*ETHAPGVASKP Trigger: TGGCTTGCTTGCAACTCCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTCATCCTAGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS GCA 72 bp | GAAGGCCAGGCTGTTGACAGGCGGATTGGAAACCCATaGACCAGGAGTTGCAAGCAAGCCATGCTGACAAAA | + |
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Preference number: 6 (lower is better) Translates to: EGQAVDRRIGNP*TRSCKQAMLTK Trigger: TTTTGTCAGCATGGCTTGCTTGCAACTCCTGGTGCATGGGTTTCCAATCCGCCTGTCAACAGCCTGGCCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS CAA 72 bp | TCAAAACTAAAATCCCAGAATTCTTTAGAATCTGGGTaGAGGGTCACGTGTTTCTTTGCCCAGGTACTTCCT | + |
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Preference number: 6 (lower is better) Translates to: SKLKSQNSLESG*RVTCFFAQVLP Trigger: AGGAAGTACCTGGGCAAAGAAACACGTGACCCTCAACCCAGATTCTAAAGAATTCTGGGATTTTAGTTTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS CAA 72 bp | ATGATAGCAGCACATATAGCAGTGAAGAAGTTAATATaGCAAACACATGCACCCACCTCACTGAAAACTACG | + |
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Preference number: 6 (lower is better) Translates to: MIAAHIAVKKLI*QTHAPTSLKTT Trigger: CGTAGTTTTCAGTGAGGTGGGTGCATGTGTTTGCAATATTAACTTCTTCACTGCTATATGTGCTGCTATCAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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| CDS CAA 72 bp | GGTTCCTTGAGAATGGCCAATGTAGTAAATCTGCTTTaGTCCTGTTTTATCCAGAATGAAATTAATGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: GSLRMANVVNLL*SCFIQNEINGG Trigger: GCCACCATTAATTTCATTCTGGATAAAACAGGACAAAAGCAGATTTACTACATTGGCCATTCTCAAGGAACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147153.4 |
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