Pregenerated sensors for LIPO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000079342Ensembl transcript IDs: ENSMUST00000148137.9
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AAGACCTACACAAACGTGGAATACAAGGAACTTAACATACATGTGCACATGTGCCGACAGCATCATGTCTaGTATCACAAATGGGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: KTYTNVEYKELNIHVHMCRQHHV*YHKWAR Trigger: CCTGGCCCATTTGTGATATCAGACATGATGCTGTCG...GCACATGTGCACATGTATGTTAAGTTCCTTGTATTCCACGTTTGTGTAGGTCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| 3UTR CAA 90 bp | GAGTTGTGTGATCTAAGCAACAAGATTACCTGTCCTTCTATAGCCTaGGTTCTAATGTATGAAATGTGTTCTGATCTGTTCTTCCGACAG | + |
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Preference number: 2 (lower is better) Translates to: ELCDLSNKITCPSIA*VLMYEMCSDLFFRQ Trigger: CTGTCGGAAGAACAGATCAGAACACATTTCATACATTAGAACCAAGGCTATAGAAGGACAGGTAATCTTGTTGCTTAGATCACACAACTC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| 3UTR TCA 72 bp | ATGTGTTCTGATCTGTTCTTCCGACAGCATCATGTCTaGTATCACAAATGGGCCAGGCCTCTTTCTTTATCA | + |
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Preference number: 3 (lower is better) Translates to: MCSDLFFRQHHV*YHKWARPLSLS Trigger: TGATAAAGAAAGAGGCCTGGCCCATTTGTGATATCAGACATGATGCTGTCGGAAGAACAGATCAGAACACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| 3UTR-3UTR CAA 90 bp | ACCTACACAAACGTGGAATACAAGGAACTTAACATACATGTGCACATGTGCACAATTGTGTGTTTGAATTaGTGGTCACTTTGTGTTGCA | + |
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Preference number: 3 (lower is better) Translates to: TYTNVEYKELNIHVHMCTIVCLN*WSLCVA Trigger: TGCAACACAAAGTGACCACAAATTCAAACACACAAT...TGTGCACATGTGCACATGTATGTTAAGTTCCTTGTATTCCACGTTTGTGTAGGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR TCA 90 bp | GATCCACACCTTTGTTGTGATGGAAAGTTTGAATTTAGACTAGTCACTAAGAGTCCATACACCAGCAGTTaGAAACAAGCCAGGGAGACA | + |
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Preference number: 4 (lower is better) Translates to: DPHLCCDGKFEFRLVTKSPYTSS*KQARET Trigger: TGTCTCCCTGGCTTGTTTTCAACTGCTGGTGTATGG...ACTCTTAGTGACTAGTCTAAATTCAAACTTTCCATCACAACAAAGGTGTGGATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR GCA 90 bp | ACCTACACAAACGTGGAATACAAGGAACTTAACATACATGTGCACATGTGCACACAGTTCTTGATTTGTTaGAAATGCCCCCAGAGCGAT | + |
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Preference number: 4 (lower is better) Translates to: TYTNVEYKELNIHVHMCTQFLIC*KCPQSD Trigger: ATCGCTCTGGGGGCATTTGCAACAAATCAAGAACTG...TGTGCACATGTGCACATGTATGTTAAGTTCCTTGTATTCCACGTTTGTGTAGGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR CCA 90 bp | GATCCACACCTTTGTTGTGATGGAAAGTTTGAATTTAGACTAGTCACTAAGAGTTGTTGTCAGGGGGATTaGAAACCCATACACCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: DPHLCCDGKFEFRLVTKSCCQGD*KPIHQQ Trigger: CTGCTGGTGTATGGGTTTCCAATCCCCCTGACAACA...ACTCTTAGTGACTAGTCTAAATTCAAACTTTCCATCACAACAAAGGTGTGGATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR CCA 90 bp | AAGACCTACACAAACGTGGAATACAAGGAACTTAACATACATGTGCACATGTGCTGGAGTAAAATAAGCTaGAAGGCGCCCAGAACCTTT | + |
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Preference number: 4 (lower is better) Translates to: KTYTNVEYKELNIHVHMCWSKIS*KAPRTF Trigger: AAAGGTTCTGGGCGCCTTCCAGCTTATTTTACTCCA...GCACATGTGCACATGTATGTTAAGTTCCTTGTATTCCACGTTTGTGTAGGTCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR GCA 90 bp | TATTCAACAGTGGCTGATCCACACCTTTGTTGTGATGGAAAGTTTGAATTTAGAGGTCACGTGTTTCTTTaGCCAGGTACTTCCTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: YSTVADPHLCCDGKFEFRGHVFL*PGTSSV Trigger: AACAGAGGAAGTACCTGGGCAAAGAAACACGTGACC...TCTAAATTCAAACTTTCCATCACAACAAAGGTGTGGATCAGCCACTGTTGAATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR GCA 90 bp | ACCTACACAAACGTGGAATACAAGGAACTTAACATACATGTGCACATGTGCACACGGCTCGTATTTAATTaGTCTGGAGAATATCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: TYTNVEYKELNIHVHMCTRLVFN*SGEYPV Trigger: GACTGGATATTCTCCAGAGCAATTAAATACGAGCCG...TGTGCACATGTGCACATGTATGTTAAGTTCCTTGTATTCCACGTTTGTGTAGGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR TCA 90 bp | GATATCACAAATGGGCCAGGCCTCTTTCTTTATCAGTATATTAGGATTTCATTATTTTCAGCCAGTTCTTaGTTTGTTGCAAATGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: DITNGPGLFLYQYIRISLFSASS*FVANAP Trigger: GGGGGCATTTGCAACAAATCAAGAACTGGCTGAAAA...TAATGAAATCCTAATATACTGATAAAGAAAGAGGCCTGGCCCATTTGTGATATC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR CCA 90 bp | GATCCACACCTTTGTTGTGATGGAAAGTTTGAATTTAGACTAGTCACTAAGAGTCTGCATATTCAGAGATaGACTTCCCCAATCATAAGC | + |
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Preference number: 4 (lower is better) Translates to: DPHLCCDGKFEFRLVTKSLHIQR*TSPIIS Trigger: GCTTATGATTGGGGAAGTCCATCTCTGAATATGCAG...ACTCTTAGTGACTAGTCTAAATTCAAACTTTCCATCACAACAAAGGTGTGGATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR CCA 90 bp | CACCTTTGTTGTGATGGAAAGTTTGAATTTAGACTAGTCACTAAGAGTTGTGTGACTAAACATGGCAGTTaGAACCTTCATGTCTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: HLCCDGKFEFRLVTKSCVTKHGS*NLHVFH Trigger: GTGGAAGACATGAAGGTTCCAACTGCCATGTTTAGT...CACACAACTCTTAGTGACTAGTCTAAATTCAAACTTTCCATCACAACAAAGGTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR CCA 90 bp | AAGACCTACACAAACGTGGAATACAAGGAACTTAACATACATGTGCACATGTGCATTTTTCCAAGTACATaGATAAGGCACATTGTTCTC | + |
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Preference number: 4 (lower is better) Translates to: KTYTNVEYKELNIHVHMCIFPST*IRHIVL Trigger: GAGAACAATGTGCCTTATCCATGTACTTGGAAAAAT...GCACATGTGCACATGTATGTTAAGTTCCTTGTATTCCACGTTTGTGTAGGTCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| 3UTR CAA 72 bp | GATCTAAGCAACAAGATTACCTGTCCTTCTATAGCCTaGGTTCTAATGTATGAAATGTGTTCTGATCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: DLSNKITCPSIA*VLMYEMCSDLF Trigger: GAACAGATCAGAACACATTTCATACATTAGAACCAAGGCTATAGAAGGACAGGTAATCTTGTTGCTTAGATC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR CAA 90 bp | AAGACCTACACAAACGTGGAATACAAGGAACTTAACATACATGTGCACATGTGCCCCATACACCAGCAGTaGAAAACAAGCCAGGGAGAC | + |
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Preference number: 5 (lower is better) Translates to: KTYTNVEYKELNIHVHMCPIHQQ*KTSQGD Trigger: GTCTCCCTGGCTTGTTTTCAACTGCTGGTGTATGGG...GCACATGTGCACATGTATGTTAAGTTCCTTGTATTCCACGTTTGTGTAGGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR CAA 90 bp | AAGACCTACACAAACGTGGAATACAAGGAACTTAACATACATGTGCACATGTGCCCAGTTCTTGATTTGTaGCAAATGCCCCCAGAGCGA | + |
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Preference number: 5 (lower is better) Translates to: KTYTNVEYKELNIHVHMCPVLDL*QMPPER Trigger: TCGCTCTGGGGGCATTTGCAACAAATCAAGAACTGG...GCACATGTGCACATGTATGTTAAGTTCCTTGTATTCCACGTTTGTGTAGGTCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR CAA 90 bp | GATATCACAAATGGGCCAGGCCTCTTTCTTTATCAGTATATTAGGATTTCATTAGGGTCACGTGTTTCTTaGCCCAGGTACTTCCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: DITNGPGLFLYQYIRISLGSRVS*PRYFLC Trigger: ACAGAGGAAGTACCTGGGCAAAGAAACACGTGACCC...TAATGAAATCCTAATATACTGATAAAGAAAGAGGCCTGGCCCATTTGTGATATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR CAA 90 bp | GATATCACAAATGGGCCAGGCCTCTTTCTTTATCAGTATATTAGGATTTCATTACAGGTACTTCCTCTGTaGTTTCCCAACCACACATCA | + |
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Preference number: 5 (lower is better) Translates to: DITNGPGLFLYQYIRISLQVLPL*FPNHTS Trigger: TGATGTGTGGTTGGGAAACAACAGAGGAAGTACCTG...TAATGAAATCCTAATATACTGATAAAGAAAGAGGCCTGGCCCATTTGTGATATC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR CAA 90 bp | AAGACCTACACAAACGTGGAATACAAGGAACTTAACATACATGTGCACATGTGCGCCAGCATAGTAAATTaGCTTTTGTCCTGTTTTCTC | + |
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Preference number: 5 (lower is better) Translates to: KTYTNVEYKELNIHVHMCASIVN*LLSCFL Trigger: GAGAAAACAGGACAAAAGCAAATTTACTATGCTGGC...GCACATGTGCACATGTATGTTAAGTTCCTTGTATTCCACGTTTGTGTAGGTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR CAA 90 bp | GTGGCTGATCCACACCTTTGTTGTGATGGAAAGTTTGAATTTAGACTAGTCACTTCACCAAAAACAATCTaGAAAGCCGTTGGAGTAAAA | + |
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Preference number: 5 (lower is better) Translates to: VADPHLCCDGKFEFRLVTSPKTI*KAVGVK Trigger: TTTTACTCCAACGGCTTTCAAGATTGTTTTTGGTGA...AGTGACTAGTCTAAATTCAAACTTTCCATCACAACAAAGGTGTGGATCAGCCAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS-3UTR CAA 90 bp | GATCCACACCTTTGTTGTGATGGAAAGTTTGAATTTAGACTAGTCACTAAGAGTAGCCTACTGAAAACTTaGGTAGGGAAGAATTCTTTT | + |
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Preference number: 5 (lower is better) Translates to: DPHLCCDGKFEFRLVTKSSLLKT*VGKNSF Trigger: AAAAGAATTCTTCCCTACCAAAGTTTTCAGTAGGCT...ACTCTTAGTGACTAGTCTAAATTCAAACTTTCCATCACAACAAAGGTGTGGATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS CAA 72 bp | TCTGCTAGGATGAAGGCCAGGCTGTTGTCAGGGGGATaGGAAACCCATACACCAGCAGTTGAAAACAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: SARMKARLLSGG*ETHTPAVENKP Trigger: TGGCTTGTTTTCAACTGCTGGTGTATGGGTTTCCAATCCCCCTGACAACAGCCTGGCCTTCATCCTAGCAGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS GCA 72 bp | TTCTTTAGAATCTGGGTTGAGGGTCACGTGTTTCTTTaGCCAGGTACTTCCTCTGTTGTTTCCCAACCACAC | + |
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Preference number: 6 (lower is better) Translates to: FFRIWVEGHVFL*PGTSSVVSQPH Trigger: GTGTGGTTGGGAAACAACAGAGGAAGTACCTGGGCAAAGAAACACGTGACCCTCAACCCAGATTCTAAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS TCA 72 bp | GTTGTCAGGGGGATTGGAAACCCATACACCAGCAGTTaGAAACAAGCCAGGGAGACAAAATACTACCATCTT | + |
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Preference number: 6 (lower is better) Translates to: VVRGIGNPYTSS*KQARETKYYHL Trigger: AAGATGGTAGTATTTTGTCTCCCTGGCTTGTTTTCAACTGCTGGTGTATGGGTTTCCAATCCCCCTGACAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS TCA 72 bp | CAAGCCAGGGAGACAAAATACTACCATCTTTGGGGCTaGACTATTAGCATTGTTCTTCCCATGAGGAATTCG | + |
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Preference number: 6 (lower is better) Translates to: QARETKYYHLWG*TISIVLPMRNS Trigger: CGAATTCCTCATGGGAAGAACAATGCTAATAGTTCAGCCCCAAAGATGGTAGTATTTTGTCTCCCTGGCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS GCA 72 bp | TGTGTTATGTACACATCAACACGGCTCGTATTTAATTaGTCTGGAGAATATCCAGTCAGTGAGCCCAGTACA | + |
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Preference number: 6 (lower is better) Translates to: CVMYTSTRLVFN*SGEYPVSEPST Trigger: TGTACTGGGCTCACTGACTGGATATTCTCCAGAGCAATTAAATACGAGCCGTGTTGATGTGTACATAACACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS CAA 72 bp | GGTTCCTTGAGAATGGCCAGCATAGTAAATTTGCTTTaGTCCTGTTTTCTCCAGAATGAAATTAATGATGGC | + |
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Preference number: 6 (lower is better) Translates to: GSLRMASIVNLL*SCFLQNEINDG Trigger: GCCATCATTAATTTCATTCTGGAGAAAACAGGACAAAAGCAAATTTACTATGCTGGCCATTCTCAAGGAACC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS CAA 72 bp | TCAGAAATAATCTTATGGTATGTGAGGTTGGAGATTTaGGGTACCAAATTTGCAACATCTTCTGGGTTAGAC | + |
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Preference number: 6 (lower is better) Translates to: SEIILWYVRLEI*GTKFATSSGLD Trigger: GTCTAACCCAGAAGATGTTGCAAATTTGGTACCCAAAATCTCCAACCTCACATACCATAAGATTATTTCTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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| CDS TCA 72 bp | GGAAGGCGCCCAGAACCTTTGACATATTTAACAGTATaGATTGGAGCTATTAAAATGCTGAGTTTAATCTTT | + |
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Preference number: 6 (lower is better) Translates to: GRRPEPLTYLTV*IGAIKMLSLIF Trigger: AAAGATTAAACTCAGCATTTTAATAGCTCCAATTCATACTGTTAAATATGTCAAAGGTTCTGGGCGCCTTCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148137.9 |
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