Pregenerated sensors for LIPN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024770Ensembl transcript IDs: ENSMUST00000025682.12, ENSMUST00000126710.8, ENSMUST00000148821.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAAAGTCACATCCCAGACACCCCTCCCTTGGAGGAAGCTTCAGCTTaGCTCAGTGTACCCTTCACTTCAGCTGAGGGTATATTTTACCAG | + |
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Preference number: 1 (lower is better) Translates to: ESHIPDTPPLEEASA*LSVPFTSAEGIFYQ Trigger: CTGGTAAAATATACCCTCAGCTGAAGTGAAGGGTACACTGAGGCAAGCTGAAGCTTCCTCCAAGGGAGGGGTGTCTGGGATGTGACTTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR TCA 90 bp | ACTCTCTGTGATAAAGATGGTACCTGCTTTATGTGCAGCATGTTCTaGATTGATGATCCTGTGGGAGCGTGGGCCATGTACACATCCAGT | + |
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Preference number: 1 (lower is better) Translates to: TLCDKDGTCFMCSMF*IDDPVGAWAMYTSS Trigger: ACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAGGTACCATCTTTATCACAGAGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR CCA 90 bp | TTGTTGAATCCAGCCCACAAGGACATAAATTCACTACACAATGGTTaGAGTAGCTTTTGGTTGCAGAATGTGATAAATGACATCCTTGCA | + |
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Preference number: 1 (lower is better) Translates to: LLNPAHKDINSLHNG*SSFWLQNVINDILA Trigger: TGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGGATTCAACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR CCA 90 bp | GCCCACAAGGACATAAATTCACTACACAATGGTTGGAGTAGCTTTTaGTTGCAGAATGTGATAAATGACATCCTTGCATTCTTATCTTCT | + |
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Preference number: 1 (lower is better) Translates to: AHKDINSLHNGWSSF*LQNVINDILAFLSS Trigger: AGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR CAA 90 bp | TCTGTGATAAAGATGGTACCTGCTTTATGTGCAGCATGTTCTGAATaGATGATCCTGTGGGAGCGTGGGCCATGTACACATCCAGTCGAC | + |
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Preference number: 2 (lower is better) Translates to: SVIKMVPALCAACSE*MILWERGPCTHPVD Trigger: GTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAGGTACCATCTTTATCACAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGCAGCATGTTCTGAATTGATGATCCTGTGGGAGCGTGGGCCATGTACACATCGAGTGAATGTCCAATaGAGTACAACTTCTCCTGAC | + |
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Preference number: 2 (lower is better) Translates to: CAACSELMILWERGPCTHRVNVQ*STTSPD Trigger: GTCAGGAGAAGTTGTACTTCATTGGACATTCACTCG...ATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGGCAGCAAAAACAAAGTGCAGATGATGTTCTCATTTTCTAGAGACAAGCGTTGTAGGATATTTGAATaGGATCACAGGACCCAAGGC | + |
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Preference number: 2 (lower is better) Translates to: RGSKNKVQMMFSFSRDKRCRIFE*DHRTQG Trigger: GCCTTGGGTCCTGTGATCTCATTCAAATATCCTACA...ACGCTTGTCTCTAGAAAATGAGAACATCATCTGCACTTTGTTTTTGCTGCCTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR CAA 90 bp | GAGGGTGGGTTAAGACCTTTTACAGTCATTGAAACAAGTAAAGAGTaGACTCTCTGTGATAAAGATGGTACCTGCTTTATGTGCAGCATG | + |
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Preference number: 2 (lower is better) Translates to: EGGLRPFTVIETSKE*TLCDKDGTCFMCSM Trigger: CATGCTGCACATAAAGCAGGTACCATCTTTATCACAGAGAGTCAACTCTTTACTTGTTTCAATGACTGTAAAAGGTCTTAACCCACCCTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR-3UTR CCA 90 bp | GCCCGAAGAGGCAGCAAAAACAAAGTGCAGATGATGTTCTCATTTTCTAGAGACGGTTGGAGTAGCTTTTaGTTGCAGAATGTGATAAAT | + |
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Preference number: 2 (lower is better) Translates to: ARRGSKNKVQMMFSFSRDGWSSF*LQNVIN Trigger: ATTTATCACATTCTGCAACCAAAAGCTACTCCAACC...GTCTCTAGAAAATGAGAACATCATCTGCACTTTGTTTTTGCTGCCTCTTCGGGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR-3UTR CCA 90 bp | CTGAGGGTATATTTTACCAGCTCTAGCTTAAAATGGCATTGCTTTGTGTCACACTCACTACACAATGGTTaGAGTAGCTTTTGGTTGCAG | + |
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Preference number: 2 (lower is better) Translates to: LRVYFTSSSLKWHCFVSHSLHNG*SSFWLQ Trigger: CTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGA...GTGTGACACAAAGCAATGCCATTTTAAGCTAGAGCTGGTAAAATATACCCTCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR-3UTR TCA 90 bp | CTGAGGGTATATTTTACCAGCTCTAGCTTAAAATGGCATTGCTTTGTGTCACACTATTGTAGTGCCGAGTaGATGTCCAATGAAGTACAA | + |
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Preference number: 2 (lower is better) Translates to: LRVYFTSSSLKWHCFVSHYCSAE*MSNEVQ Trigger: TTGTACTTCATTGGACATTCACTCGGCACTACAATA...GTGTGACACAAAGCAATGCCATTTTAAGCTAGAGCTGGTAAAATATACCCTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR-3UTR TCA 90 bp | CTGAGGGTATATTTTACCAGCTCTAGCTTAAAATGGCATTGCTTTGTGTCACACAGGCAAAATTCATTTTaGTTCTTTGCGCCAGTTCAG | + |
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Preference number: 2 (lower is better) Translates to: LRVYFTSSSLKWHCFVSHRQNSF*FFAPVQ Trigger: CTGAACTGGCGCAAAGAATCAAAATGAATTTTGCCT...GTGTGACACAAAGCAATGCCATTTTAAGCTAGAGCTGGTAAAATATACCCTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR-3UTR CCA 90 bp | TGGAGTAGCTTTTGGTTGCAGAATGTGATAAATGACATCCTTGCATTCTTATCTCCAGTTCAGGCATGGTaGAAAAGGCTACAAATCCTA | + |
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Preference number: 2 (lower is better) Translates to: WSSFWLQNVINDILAFLSPVQAW*KRLQIL Trigger: TAGGATTTGTAGCCTTTTCCACCATGCCTGAACTGG...AGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR CAA 90 bp | CACAAGGACATAAATTCACTACACAATGGTTGGAGTAGCTTTTGGTaGCAGAATGTGATAAATGACATCCTTGCATTCTTATCTTCTAAA | + |
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Preference number: 2 (lower is better) Translates to: HKDINSLHNGWSSFW*QNVINDILAFLSSK Trigger: TTTAGAAGATAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR GCA 72 bp | ATCCCAGACACCCCTCCCTTGGAGGAAGCTTCAGCTTaGCTCAGTGTACCCTTCACTTCAGCTGAGGGTATA | + |
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Preference number: 3 (lower is better) Translates to: IPDTPPLEEASA*LSVPFTSAEGI Trigger: TATACCCTCAGCTGAAGTGAAGGGTACACTGAGGCAAGCTGAAGCTTCCTCCAAGGGAGGGGTGTCTGGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR CCA 72 bp | GCTTTATGTGCAGCATGTTCTGAATTGATGATCCTGTaGGAGCGTGGGCCATGTACACATCCAGTCGACTCA | + |
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Preference number: 3 (lower is better) Translates to: ALCAACSELMIL*ERGPCTHPVDS Trigger: TGAGTCGACTGGATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR-3UTR CAA 90 bp | CAAATAAGCCCCGTTAGAAAGTCACATCCCAGACACCCCTCCCTTGGAGGAAGCTGGAGTAGCTTTTGGTaGCAGAATGTGATAAATGAC | + |
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Preference number: 3 (lower is better) Translates to: QISPVRKSHPRHPSLGGSWSSFW*QNVIND Trigger: GTCATTTATCACATTCTGCAACCAAAAGCTACTCCA...GCTTCCTCCAAGGGAGGGGTGTCTGGGATGTGACTTTCTAACGGGGCTTATTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR TCA 72 bp | GATAAAGATGGTACCTGCTTTATGTGCAGCATGTTCTaGATTGATGATCCTGTGGGAGCGTGGGCCATGTAC | + |
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Preference number: 3 (lower is better) Translates to: DKDGTCFMCSMF*IDDPVGAWAMY Trigger: GTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAGGTACCATCTTTATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR-3UTR CAA 90 bp | CTGAGGGTATATTTTACCAGCTCTAGCTTAAAATGGCATTGCTTTGTGTCACACGCAGCATGTTCTGAATaGATGATCCTGTGGGAGCGT | + |
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Preference number: 3 (lower is better) Translates to: LRVYFTSSSLKWHCFVSHAACSE*MILWER Trigger: ACGCTCCCACAGGATCATCAATTCAGAACATGCTGC...GTGTGACACAAAGCAATGCCATTTTAAGCTAGAGCTGGTAAAATATACCCTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR TCA 72 bp | GGTGGAAAAGGCTACAAATCCTATTGTAGTGCCGAGTaGATGTCCAATGAAGTACAACTTCTCCTGACCTGT | + |
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Preference number: 3 (lower is better) Translates to: GGKGYKSYCSAE*MSNEVQLLLTC Trigger: ACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAGGATTTGTAGCCTTTTCCACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR TCA 72 bp | TCAAAGCCCGAAGAGGCAGCAAAAACAAAGTGCAGATaGTGTTCTCATTTTCTAGAGACAAGCGTGTTGAGA | + |
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Preference number: 3 (lower is better) Translates to: SKPEEAAKTKCR*CSHFLETSVLR Trigger: TCTCAACACGCTTGTCTCTAGAAAATGAGAACATCATCTGCACTTTGTTTTTGCTGCCTCTTCGGGCTTTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR TCA 72 bp | TCACACACTTGTTATCTACCACAAAACTCTTTCTCTTaGAGTCTAGGAAAATCAAAGCCCGAAGAGGCAGCA | + |
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Preference number: 3 (lower is better) Translates to: SHTCYLPQNSFS*SLGKSKPEEAA Trigger: TGCTGCCTCTTCGGGCTTTGATTTTCCTAGACTTCAAGAGAAAGAGTTTTGTGGTAGATAACAAGTGTGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR CCA 72 bp | CCAGCCCACAAGGACATAAATTCACTACACAATGGTTaGAGTAGCTTTTGGTTGCAGAATGTGATAAATGAC | + |
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Preference number: 3 (lower is better) Translates to: PAHKDINSLHNG*SSFWLQNVIND Trigger: GTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTATGTCCTTGTGGGCTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR-3UTR CAA 90 bp | TGTTCTCATTTTCTAGAGACAAGCGTGTTGAGAGGGTGGGTTAAGACCTTTTACGGAAGTAGAAACAAATaGGTAAAAACGCTTGTAGGA | + |
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Preference number: 3 (lower is better) Translates to: CSHFLETSVLRGWVKTFYGSRNK*VKTLVG Trigger: TCCTACAAGCGTTTTTACCAATTTGTTTCTACTTCC...GTAAAAGGTCTTAACCCACCCTCTCAACACGCTTGTCTCTAGAAAATGAGAACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR-3UTR CAA 90 bp | TTATCTACCACAAAACTCTTTCTCTTGAAGTCTAGGAAAATCAAAGCCCGAAGAATTCATTTTGATTCTTaGCGCCAGTTCAGGCATGGT | + |
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Preference number: 3 (lower is better) Translates to: LSTTKLFLLKSRKIKARRIHFDS*RQFRHG Trigger: ACCATGCCTGAACTGGCGCAAAGAATCAAAATGAAT...TCTTCGGGCTTTGATTTTCCTAGACTTCAAGAGAAAGAGTTTTGTGGTAGATAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| CDS-3UTR GCA 90 bp | GCTTTATGTGCAGCATGTTCTGAATTGATGATCCTGTGGGAGCGTGGGCCATGTTGTCTGCCCAGTCTGTaGTCTCCCATGGGGAATTCT | + |
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Preference number: 4 (lower is better) Translates to: ALCAACSELMILWERGPCCLPSL*SPMGNS Trigger: AGAATTCCCCATGGGAGAGCACAGACTGGGCAGACA...ACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| CDS-3UTR TCA 90 bp | TTATCTACCACAAAACTCTTTCTCTTGAAGTCTAGGAAAATCAAAGCCCGAAGAACCCATCTGCGGTGGTaGCGTCATACTCTTCACTGG | + |
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Preference number: 4 (lower is better) Translates to: LSTTKLFLLKSRKIKARRTHLRW*RHTLHW Trigger: CCAGTGAAGAGTATGACGTCACCACCGCAGATGGGT...TCTTCGGGCTTTGATTTTCCTAGACTTCAAGAGAAAGAGTTTTGTGGTAGATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR CAA 72 bp | GTCACACACTTGTTATCTACCACAAAACTCTTTCTCTaGAAGTCTAGGAAAATCAAAGCCCGAAGAGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: VTHLLSTTKLFL*KSRKIKARRGS Trigger: GCTGCCTCTTCGGGCTTTGATTTTCCTAGACTTCAAGAGAAAGAGTTTTGTGGTAGATAACAAGTGTGTGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| CDS-3UTR TCA 90 bp | AACAAATTGGTAAAAACGCTTGTAGGATATTTGAATGAGATCACAGGACCCAAGCATGGGGAATTCTGTTaGTGGCGAGAATGTACCCAT | + |
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Preference number: 4 (lower is better) Translates to: NKLVKTLVGYLNEITGPKHGEFC*WRECTH Trigger: ATGGGTACATTCTCGCCATCAACAGAATTCCCCATG...CTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR CAA 72 bp | AGTAGAAACAAATTGGTAAAAACGCTTGTAGGATATTaGAATGAGATCACAGGACCCAAGGCAAAATTCATT | + |
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Preference number: 4 (lower is better) Translates to: SRNKLVKTLVGY*NEITGPKAKFI Trigger: AATGAATTTTGCCTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTTTCTACT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| 3UTR CAA 72 bp | ATAAATTCACTACACAATGGTTGGAGTAGCTTTTGGTaGCAGAATGTGATAAATGACATCCTTGCATTCTTA | + |
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Preference number: 4 (lower is better) Translates to: INSLHNGWSSFW*QNVINDILAFL Trigger: TAAGAATGCAAGGATGTCATTTATCACATTCTGCAACCAAAAGCTACTCCAACCATTGTGTAGTGAATTTAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| CDS CCA 90 bp | CGAGCACATCGTGTCCACCAGCCCAAATGGCAGTGGGTACCTTCATaGCCGTCAGGTCATACAAGGGAGGGTAACTCTGGTTGTAGTGAT | + |
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Preference number: 5 (lower is better) Translates to: RAHRVHQPKWQWVPS*PSGHTREGNSGCSD Trigger: ATCACTACAACCAGAGTTACCCTCCCTTGTATGACCTGACGGCCATGAAGGTACCCACTGCCATTTGGGCTGGTGGACACGATGTGCTCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025682.12 |
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| CDS CCA 90 bp | CTTGAGGAGTTACGAGCACATCGTGTCCACCAGCCCAAATGGCAGTaGGTACCTTCATGGCCGTCAGGTCATACAAGGGAGGGTAACTCT | + |
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Preference number: 5 (lower is better) Translates to: LEELRAHRVHQPKWQ*VPSWPSGHTREGNS Trigger: AGAGTTACCCTCCCTTGTATGACCTGACGGCCATGAAGGTACCCACTGCCATTTGGGCTGGTGGACACGATGTGCTCGTAACTCCTCAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025682.12 |
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| CDS CCA 90 bp | CTACATCTTGAGGAGTTACGAGCACATCGTGTCCACCAGCCCAAATaGCAGTGGGTACCTTCATGGCCGTCAGGTCATACAAGGGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: LHLEELRAHRVHQPK*QWVPSWPSGHTREG Trigger: ACCCTCCCTTGTATGACCTGACGGCCATGAAGGTACCCACTGCCATTTGGGCTGGTGGACACGATGTGCTCGTAACTCCTCAAGATGTAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025682.12 |
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| CDS GCA 90 bp | GCAAACAAGGCATGTTGCATATATACAACAGGCCGGGGTCCTGTCTaGCCAGTCTGTGCTCTCCCATGGGGAATTCTGTTGATGGCGAGA | + |
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Preference number: 5 (lower is better) Translates to: ANKACCIYTTGRGPV*PVCALPWGILLMAR Trigger: TCTCGCCATCAACAGAATTCCCCATGGGAGAGCACAGACTGGGCAGACAGGACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025682.12 ENSMUST00000126710.8 |
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| CDS-3UTR CAA 90 bp | AGAGGCAGCAAAAACAAAGTGCAGATGATGTTCTCATTTTCTAGAGACAAGCGTCCATGGGGAATTCTGTaGATGGCGAGAATGTACCCA | + |
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Preference number: 5 (lower is better) Translates to: RGSKNKVQMMFSFSRDKRPWGIL*MARMYP Trigger: TGGGTACATTCTCGCCATCAACAGAATTCCCCATGG...ACGCTTGTCTCTAGAAAATGAGAACATCATCTGCACTTTGTTTTTGCTGCCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| CDS TCA 90 bp | CCTATTGTAGTGCCGAGTGAATGTCCAATGAAGTACAACTTCTCCTaGCCTGTTTTATTCACAATGAAATCTATTATCCCTGGGAGGTCA | + |
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Preference number: 5 (lower is better) Translates to: PIVVPSECPMKYNFS*PVLFTMKSIIPGRS Trigger: TGACCTCCCAGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCACTACAATAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025682.12 ENSMUST00000126710.8 |
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| CDS-3UTR CAA 90 bp | AACAAATTGGTAAAAACGCTTGTAGGATATTTGAATGAGATCACAGGACCCAAGCCTGGGAGGTCATATTaGGCCATTTCATTGAAGCTG | + |
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Preference number: 5 (lower is better) Translates to: NKLVKTLVGYLNEITGPKPGRSY*AISLKL Trigger: CAGCTTCAATGAAATGGCCAAATATGACCTCCCAGG...CTTGGGTCCTGTGATCTCATTCAAATATCCTACAAGCGTTTTTACCAATTTGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| CDS-3UTR CAA 90 bp | TGTTCTCATTTTCTAGAGACAAGCGTGTTGAGAGGGTGGGTTAAGACCTTTTACGTATCAAACAAGCCGTaGTTAAAAATAGCCACATCA | + |
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Preference number: 5 (lower is better) Translates to: CSHFLETSVLRGWVKTFYVSNKP*LKIATS Trigger: TGATGTGGCTATTTTTAACAACGGCTTGTTTGATAC...GTAAAAGGTCTTAACCCACCCTCTCAACACGCTTGTCTCTAGAAAATGAGAACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000148821.2 |
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| CDS CAA 90 bp | CGGGGTCCTGTCTGCCCAGTCTGTGCTCTCCCATGGGGAATTCTGTaGATGGCGAGAATGTACCCATCTGCGGTGGTGACGTCATACTCT | + |
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Preference number: 6 (lower is better) Translates to: RGPVCPVCALPWGIL*MARMYPSAVVTSYS Trigger: AGAGTATGACGTCACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCATGGGAGAGCACAGACTGGGCAGACAGGACCCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025682.12 ENSMUST00000126710.8 |
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| CDS CCA 72 bp | CGTGTCCACCAGCCCAAATGGCAGTGGGTACCTTCATaGCCGTCAGGTCATACAAGGGAGGGTAACTCTGGT | + |
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Preference number: 6 (lower is better) Translates to: RVHQPKWQWVPS*PSGHTREGNSG Trigger: ACCAGAGTTACCCTCCCTTGTATGACCTGACGGCCATGAAGGTACCCACTGCCATTTGGGCTGGTGGACACG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025682.12 |
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| CDS CCA 72 bp | TTACGAGCACATCGTGTCCACCAGCCCAAATGGCAGTaGGTACCTTCATGGCCGTCAGGTCATACAAGGGAG | + |
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Preference number: 6 (lower is better) Translates to: LRAHRVHQPKWQ*VPSWPSGHTRE Trigger: CTCCCTTGTATGACCTGACGGCCATGAAGGTACCCACTGCCATTTGGGCTGGTGGACACGATGTGCTCGTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025682.12 |
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| CDS CCA 72 bp | GAGGAGTTACGAGCACATCGTGTCCACCAGCCCAAATaGCAGTGGGTACCTTCATGGCCGTCAGGTCATACA | + |
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Preference number: 6 (lower is better) Translates to: EELRAHRVHQPK*QWVPSWPSGHT Trigger: TGTATGACCTGACGGCCATGAAGGTACCCACTGCCATTTGGGCTGGTGGACACGATGTGCTCGTAACTCCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025682.12 |
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| CDS GCA 72 bp | ATATACAACAGGCCGGGGTCCTGTCTGCCCAGTCTGTaGTCTCCCATGGGGAATTCTGTTGATGGCGAGAAT | + |
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Preference number: 6 (lower is better) Translates to: IYNRPGSCLPSL*SPMGNSVDGEN Trigger: ATTCTCGCCATCAACAGAATTCCCCATGGGAGAGCACAGACTGGGCAGACAGGACCCCGGCCTGTTGTATAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025682.12 ENSMUST00000126710.8 |
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| CDS GCA 72 bp | ATGGGGAATTCTGTTGATGGCGAGAATGTACCCATCTaGGGTGGTGACGTCATACTCTTCACTGGGGTAGCC | + |
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Preference number: 6 (lower is better) Translates to: MGNSVDGENVPI*GGDVILFTGVA Trigger: GGCTACCCCAGTGAAGAGTATGACGTCACCACCGCAGATGGGTACATTCTCGCCATCAACAGAATTCCCCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025682.12 ENSMUST00000126710.8 ENSMUST00000148821.2 |
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| CDS CAA 72 bp | CTCAAGCCAGTAGGCATTGTCTGCAAACAAGGCATGTaGCATATATACAACAGGCCGGGGTCCTGTCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: LKPVGIVCKQGM*HIYNRPGSCLP Trigger: GGGCAGACAGGACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025682.12 ENSMUST00000126710.8 |
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| CDS CAA 90 bp | GGCAAAATTCTCAAGCCAGTAGGCATTGTCTGCAAACAAGGCATGTaGCATATATACAACAGGCCGGGGTCCTGTCTGCCCAGTCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: GKILKPVGIVCKQGM*HIYNRPGSCLPSLC Trigger: GCACAGACTGGGCAGACAGGACCCCGGCCTGTTGTATATATGCAACATGCCTTGTTTGCAGACAATGCCTACTGGCTTGAGAATTTTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025682.12 ENSMUST00000126710.8 |
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| CDS CAA 72 bp | ATCGGTAAAGCTGCTTTATGTGCAGCATGTTCTGAATaGATGATCCTGTGGGAGCGTGGGCCATGTACACAT | + |
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Preference number: 6 (lower is better) Translates to: IGKAALCAACSE*MILWERGPCTH Trigger: ATGTGTACATGGCCCACGCTCCCACAGGATCATCAATTCAGAACATGCTGCACATAAAGCAGCTTTACCGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025682.12 |
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| CDS TCA 72 bp | GTGCCGAGTGAATGTCCAATGAAGTACAACTTCTCCTaGCCTGTTTTATTCACAATGAAATCTATTATCCCT | + |
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Preference number: 6 (lower is better) Translates to: VPSECPMKYNFS*PVLFTMKSIIP Trigger: AGGGATAATAGATTTCATTGTGAATAAAACAGGTCAGGAGAAGTTGTACTTCATTGGACATTCACTCGGCAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025682.12 ENSMUST00000126710.8 |
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