Pregenerated sensors for LIPM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000056078Ensembl transcript IDs: ENSMUST00000025685.8
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCTTCAGAGTAGAATGCCAAGTCTGTACATTTCTTTaGGCATCCATCCTCCCATGG | + |
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Preference number: 2 (lower is better) Translates to: GTPTGTGELLFVFRVECQVCTFL*ASILPW Trigger: CCATGGGAGGATGGATGCTCAAAGAAATGTACAGAC...TTGGCATTCTACTCTGAAGACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| 3UTR-3UTR CCA 90 bp | TCATTTGGAGCAGCTGGTCTAATAGCAGATGAAAATCTTAGTACTGATACACAGAGGTCTTCTGGCATCTaGGTATCTCCTCTGTCCTTC | + |
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Preference number: 2 (lower is better) Translates to: SFGAAGLIADENLSTDTQRSSGI*VSPLSF Trigger: GAAGGACAGAGGAGATACCCAGATGCCAGAAGACCT...CTGTGTATCAGTACTAAGATTTTCATCTGCTATTAGACCAGCTGCTCCAAATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| 3UTR-3UTR TCA 90 bp | ACCTGTGTTCACCAACTGAGTTTAACCAACTGGAAAAAGTGTAAGTATCAGCTTTCTCCTCTGTCCTTCTaGCTAACTGATATAGCAGGT | + |
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Preference number: 2 (lower is better) Translates to: TCVHQLSLTNWKKCKYQLSPLSF*LTDIAG Trigger: ACCTGCTATATCAGTTAGTCAGAAGGACAGAGGAGA...AAGCTGATACTTACACTTTTTCCAGTTGGTTAAACTCAGTTGGTGAACACAGGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| 3UTR-3UTR TCA 90 bp | TATTCTCAACTGGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCTTCAGAGTCCACCTACCCACAATaGTTTCAGTTTTCAGTTGAT | + |
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Preference number: 2 (lower is better) Translates to: YSQLELQQAQESFYLSSESTYPQ*FQFSVD Trigger: ATCAACTGAAAACTGAAATCATTGTGGGTAGGTGGA...CTCTGAAGACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCCAGTTGAGAATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| 3UTR-3UTR TCA 90 bp | AACTGTATATTCTCAACTGGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCACTGATACACAGACATaGCATGGGAGCTACATAATT | + |
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Preference number: 2 (lower is better) Translates to: NCIFSTGTPTGTGELLFVTDTQT*HGSYII Trigger: AATTATGTAGCTCCCATGTCATGTCTGTGTATCAGT...GACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCCAGTTGAGAATATACAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| 3UTR-3UTR TCA 90 bp | TATATAGACCCTAAGGGTACACATGGGGTCCTGAAGTCCCTAAATATTACTAAGGTTGGAAAGGTTGAATaGTGCAATGATAACAGTCTA | + |
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Preference number: 2 (lower is better) Translates to: YIDPKGTHGVLKSLNITKVGKVE*CNDNSL Trigger: TAGACTGTTATCATTGCATCATTCAACCTTTCCAAC...CTTAGTAATATTTAGGGACTTCAGGACCCCATGTGTACCCTTAGGGTCTATATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| 3UTR-3UTR CCA 90 bp | TCATTTGGAGCAGCTGGTCTAATAGCAGATGAAAATCTTAGTACTGATACACAGGATGACCAAATAGCCTaGCTTCTTAAAGAAGTGTCT | + |
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Preference number: 2 (lower is better) Translates to: SFGAAGLIADENLSTDTQDDQIA*LLKEVS Trigger: AGACACTTCTTTAAGAAGCCAGGCTATTTGGTCATC...CTGTGTATCAGTACTAAGATTTTCATCTGCTATTAGACCAGCTGCTCCAAATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| 3UTR-3UTR CCA 90 bp | TATATAGACCCTAAGGGTACACATGGGGTCCTGAAGTCCCTAAATATTACTAAGTTCATTTTACTCATTTaGAGCAGCTGGTCTAATAGC | + |
|
Preference number: 2 (lower is better) Translates to: YIDPKGTHGVLKSLNITKFILLI*SSWSNS Trigger: GCTATTAGACCAGCTGCTCCAAATGAGTAAAATGAA...CTTAGTAATATTTAGGGACTTCAGGACCCCATGTGTACCCTTAGGGTCTATATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| 3UTR TCA 72 bp | AGGTCTTCTGGCATCTGGGTATCTCCTCTGTCCTTCTaGCTAACTGATATAGCAGGTTTCCAAGTCTGTACA | + |
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Preference number: 3 (lower is better) Translates to: RSSGIWVSPLSF*LTDIAGFQVCT Trigger: TGTACAGACTTGGAAACCTGCTATATCAGTTAGTCAGAAGGACAGAGGAGATACCCAGATGCCAGAAGACCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| 3UTR TCA 72 bp | GGCTTCTTAAAGAAGTGTCTTGTCTTTATGGCAATGTaGTGGCAAGGTCCACTTCATTTTATCCAAGTCAAC | + |
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Preference number: 3 (lower is better) Translates to: GFLKKCLVFMAM*WQGPLHFIQVN Trigger: GTTGACTTGGATAAAATGAAGTGGACCTTGCCATCACATTGCCATAAAGACAAGACACTTCTTTAAGAAGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CCA 90 bp | GGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCTTCAGAGTAGAATGCCAAACCCTGCAGGTTCCCTaGGGAAGGTTGGGCTCCTGC | + |
|
Preference number: 4 (lower is better) Translates to: GTPTGTGELLFVFRVECQTLQVP*GRLGSC Trigger: GCAGGAGCCCAACCTTCCCCAGGGAACCTGCAGGGT...TTGGCATTCTACTCTGAAGACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR GCA 90 bp | GTTTCCAAGTCTGTACATTTCTTTGAGCATCCATCCTCCCATGGCCCTGCCCATACCTCCAGTCCACATTaGTGTTGGGACCATCATATC | + |
|
Preference number: 4 (lower is better) Translates to: VSKSVHFFEHPSSHGPAHTSSPH*CWDHHI Trigger: GATATGATGGTCCCAACAGCAATGTGGACTGGAGGT...ATGGGCAGGGCCATGGGAGGATGGATGCTCAAAGAAATGTACAGACTTGGAAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CCA 90 bp | TACATTTCTTTGAGCATCCATCCTCCCATGGCCCTGCCCATTCCGCATGGGGTTATGTTGCTGCAGATTTaGTCAAGAATCATCTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: YISLSIHPPMALPIPHGVMLLQI*SRIIWP Trigger: TGGCCAGATGATTCTTGACCAAATCTGCAGCAACAT...AACCCCATGCGGAATGGGCAGGGCCATGGGAGGATGGATGCTCAAAGAAATGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR TCA 90 bp | TATTCTCAACTGGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCTTCAGAGCATCCAGCCCCCAGATaGAATCCACATGAGCCCACT | + |
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Preference number: 4 (lower is better) Translates to: YSQLELQQAQESFYLSSEHPAPR*NPHEPT Trigger: AGTGGGCTCATGTGGATTTCATCTGGGGGCTGGATG...CTCTGAAGACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCCAGTTGAGAATA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR GCA 90 bp | GTTTCCAAGTCTGTACATTTCTTTGAGCATCCATCCTCCCATGGCCCTGCCCATGGAAGGTTGGGCTCCTaGTTCATCAGATGTATAATT | + |
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Preference number: 4 (lower is better) Translates to: VSKSVHFFEHPSSHGPAHGRLGS*FIRCII Trigger: AATTATACATCTGATGAAGCAGGAGCCCAACCTTCC...ATGGGCAGGGCCATGGGAGGATGGATGCTCAAAGAAATGTACAGACTTGGAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CCA 90 bp | TACATTTCTTTGAGCATCCATCCTCCCATGGCCCTGCCCATTCCGCATGGGGTTGAGTTCACATTTCTTTaGAGTAAATACGCTACCAGA | + |
|
Preference number: 4 (lower is better) Translates to: YISLSIHPPMALPIPHGVEFTFL*SKYATR Trigger: TCTGGTAGCGTATTTACTCCAAAGAAATGTGAACTC...AACCCCATGCGGAATGGGCAGGGCCATGGGAGGATGGATGCTCAAAGAAATGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR TCA 90 bp | AACTGTATATTCTCAACTGGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCCATGGTGGTGCCCTGTaGGTAGCCGACATAATAGAC | + |
|
Preference number: 4 (lower is better) Translates to: NCIFSTGTPTGTGELLFVHGGAL*VADIID Trigger: GTCTATTATGTCGGCTACTCACAGGGCACCACCATG...GACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCCAGTTGAGAATATACAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR TCA 90 bp | GTTTCCAAGTCTGTACATTTCTTTGAGCATCCATCCTCCCATGGCCCTGCCCATTGCCAAATAATACCTTaGTCATCATATCTGGCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: VSKSVHFFEHPSSHGPAHCQIIP*SSYLAA Trigger: TGCTGCCAGATATGATGATCAAGGTATTATTTGGCA...ATGGGCAGGGCCATGGGAGGATGGATGCTCAAAGAAATGTACAGACTTGGAAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR TCA 90 bp | TATATAGACCCTAAGGGTACACATGGGGTCCTGAAGTCCCTAAATATTACTAAGGCCCAGAACTCATCTTaGTCTATGGAGAGGGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: YIDPKGTHGVLKSLNITKAQNSS*SMERVL Trigger: CAAGACCCTCTCCATAGATCAAGATGAGTTCTGGGC...CTTAGTAATATTTAGGGACTTCAGGACCCCATGTGTACCCTTAGGGTCTATATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR GCA 90 bp | TATATAGACCCTAAGGGTACACATGGGGTCCTGAAGTCCCTAAATATTACTAAGCCAAGAAGACCATGTTaGAGTAACACCACTGGCCTG | + |
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Preference number: 4 (lower is better) Translates to: YIDPKGTHGVLKSLNITKPRRPC*SNTTGL Trigger: CAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGG...CTTAGTAATATTTAGGGACTTCAGGACCCCATGTGTACCCTTAGGGTCTATATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR GCA 90 bp | ACCTGTGTTCACCAACTGAGTTTAACCAACTGGAAAAAGTGTAAGTATCAGCTTATGGAGAGGGTCTTGTaGTTCCGAGACCAGGTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: TCVHQLSLTNWKKCKYQLMERVL*FRDQVF Trigger: AAACACCTGGTCTCGGAAGCACAAGACCCTCTCCAT...AAGCTGATACTTACACTTTTTCCAGTTGGTTAAACTCAGTTGGTGAACACAGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CCA 90 bp | CTTTATGGCAATGTGATGGCAAGGTCCACTTCATTTTATCCAAGTCAACAATCCATTCATGAATGCTTCTaGATCCGCAGCTTTCGTGGG | + |
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Preference number: 4 (lower is better) Translates to: LYGNVMARSTSFYPSQQSIHECF*IRSFRG Trigger: CCCACGAAAGCTGCGGATCCAGAAGCATTCATGAAT...GGATTGTTGACTTGGATAAAATGAAGTGGACCTTGCCATCACATTGCCATAAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CCA 90 bp | TATTCTCAACTGGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCTTCAGAGAGTCCACATTGCTGTTaGGACCATCATATCTCGAAC | + |
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Preference number: 4 (lower is better) Translates to: YSQLELQQAQESFYLSSESPHCC*DHHISN Trigger: GTTCGAGATATGATGGTCCCAACAGCAATGTGGACT...CTCTGAAGACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCCAGTTGAGAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR TCA 90 bp | TCATTTGGAGCAGCTGGTCTAATAGCAGATGAAAATCTTAGTACTGATACACAGCAGATGAAATCCACATaGGCCCACTCAGGAATGTTC | + |
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Preference number: 4 (lower is better) Translates to: SFGAAGLIADENLSTDTQQMKST*AHSGMF Trigger: GAACATTCCTGAGTGGGCTCATGTGGATTTCATCTG...CTGTGTATCAGTACTAAGATTTTCATCTGCTATTAGACCAGCTGCTCCAAATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CCA 90 bp | TATATAGACCCTAAGGGTACACATGGGGTCCTGAAGTCCCTAAATATTACTAAGGCAGCAGCAGAAATTTaGTACCAGGACTTCTTGCAT | + |
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Preference number: 4 (lower is better) Translates to: YIDPKGTHGVLKSLNITKAAAEI*YQDFLH Trigger: ATGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGC...CTTAGTAATATTTAGGGACTTCAGGACCCCATGTGTACCCTTAGGGTCTATATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CCA 90 bp | TTTTCAGTTGATGACCAAATAGCCTGGCTTCTTAAAGAAGTGTCTTGTCTTTATTTCCCTGGGGAAGGTTaGGCTCCTGCTTCATCAGAT | + |
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Preference number: 4 (lower is better) Translates to: FSVDDQIAWLLKEVSCLYFPGEG*APASSD Trigger: ATCTGATGAAGCAGGAGCCCAACCTTCCCCAGGGAA...ATAAAGACAAGACACTTCTTTAAGAAGCCAGGCTATTTGGTCATCAACTGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR GCA 90 bp | CTTTATGGCAATGTGATGGCAAGGTCCACTTCATTTTATCCAAGTCAACAATCCATCAAAACCTGCATCTaGCAGAATAAAACCCAGGCT | + |
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Preference number: 4 (lower is better) Translates to: LYGNVMARSTSFYPSQQSIKTCI*QNKTQA Trigger: AGCCTGGGTTTTATTCTGGCAGATGCAGGTTTTGAT...GGATTGTTGACTTGGATAAAATGAAGTGGACCTTGCCATCACATTGCCATAAAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR GCA 90 bp | AACTGTATATTCTCAACTGGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCTGGCATTGTGGAAAATaGAATAAAGCCCATGGTGGT | + |
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Preference number: 4 (lower is better) Translates to: NCIFSTGTPTGTGELLFVWHCGK*NKAHGG Trigger: ACCACCATGGGCTTTATTGCATTTTCCACAATGCCA...GACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCCAGTTGAGAATATACAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR TCA 90 bp | CTTTATGGCAATGTGATGGCAAGGTCCACTTCATTTTATCCAAGTCAACAATCCTGTTCTTGTGGTAGATaGGGTTGGTTACTTCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: LYGNVMARSTSFYPSQQSCSCGR*GWLLQK Trigger: TTTCTGAAGTAACCAACCTCATCTACCACAAGAACA...GGATTGTTGACTTGGATAAAATGAAGTGGACCTTGCCATCACATTGCCATAAAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CCA 90 bp | TTTTCAGTTGATGACCAAATAGCCTGGCTTCTTAAAGAAGTGTCTTGTCTTTATGTAACACCACTGGCCTaGATCCTTCCTTCTTTAACC | + |
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Preference number: 4 (lower is better) Translates to: FSVDDQIAWLLKEVSCLYVTPLA*ILPSLT Trigger: GGTTAAAGAAGGAAGGATCCAGGCCAGTGGTGTTAC...ATAAAGACAAGACACTTCTTTAAGAAGCCAGGCTATTTGGTCATCAACTGAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CCA 90 bp | AACTGTATATTCTCAACTGGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCATTTCTCCTGATTTTTaGTCTCACTTCCCCAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: NCIFSTGTPTGTGELLFVISPDF*SHFPSQ Trigger: TTGACTGGGGAAGTGAGACCAAAAATCAGGAGAAAT...GACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCCAGTTGAGAATATACAGTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR TCA 90 bp | TCATTTGGAGCAGCTGGTCTAATAGCAGATGAAAATCTTAGTACTGATACACAGCCATTTCATCATAACTaGAAGCCCAGAACTCATCTT | + |
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Preference number: 4 (lower is better) Translates to: SFGAAGLIADENLSTDTQPFHHN*KPRTHL Trigger: AAGATGAGTTCTGGGCTTTCAGTTATGATGAAATGG...CTGTGTATCAGTACTAAGATTTTCATCTGCTATTAGACCAGCTGCTCCAAATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR TCA 90 bp | AACTGTATATTCTCAACTGGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCTACATTTTGATTTTATaGGCTAGCTCTGGCATTGTG | + |
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Preference number: 4 (lower is better) Translates to: NCIFSTGTPTGTGELLFVYILIL*ASSGIV Trigger: CACAATGCCAGAGCTAGCTCATAAAATCAAAATGTA...GACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCCAGTTGAGAATATACAGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR GCA 90 bp | ACCTGTGTTCACCAACTGAGTTTAACCAACTGGAAAAAGTGTAAGTATCAGCTTGGCGACATACACATTTaGTCTGCTCATGTTCATATT | + |
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Preference number: 4 (lower is better) Translates to: TCVHQLSLTNWKKCKYQLGDIHI*SAHVHI Trigger: AATATGAACATGAGCAGAGCAAATGTGTATGTCGCC...AAGCTGATACTTACACTTTTTCCAGTTGGTTAAACTCAGTTGGTGAACACAGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CCA 90 bp | ACCTGTGTTCACCAACTGAGTTTAACCAACTGGAAAAAGTGTAAGTATCAGCTTAAAGTTTATCACAGCTaGAAGGTCAAACCTAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: TCVHQLSLTNWKKCKYQLKVYHS*KVKPSH Trigger: ATGGCTAGGTTTGACCTTCCAGCTGTGATAAACTTT...AAGCTGATACTTACACTTTTTCCAGTTGGTTAAACTCAGTTGGTGAACACAGGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CCA 90 bp | TCATTTGGAGCAGCTGGTCTAATAGCAGATGAAAATCTTAGTACTGATACACAGGTACCTTATAGGAGTTaGCTGATTACATTTCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: SFGAAGLIADENLSTDTQVPYRS*LITFLL Trigger: CAGGAGAAATGTAATCAGCCAACTCCTATAAGGTAC...CTGTGTATCAGTACTAAGATTTTCATCTGCTATTAGACCAGCTGCTCCAAATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR GCA 90 bp | TATATAGACCCTAAGGGTACACATGGGGTCCTGAAGTCCCTAAATATTACTAAGCATACACATTTGCTCTaGTCATGTTCATATTGTTTG | + |
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Preference number: 4 (lower is better) Translates to: YIDPKGTHGVLKSLNITKHTHLL*SCSYCL Trigger: CAAACAATATGAACATGAGCAGAGCAAATGTGTATG...CTTAGTAATATTTAGGGACTTCAGGACCCCATGTGTACCCTTAGGGTCTATATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR GCA 90 bp | TTTTCAGTTGATGACCAAATAGCCTGGCTTCTTAAAGAAGTGTCTTGTCTTTATGGTACCAGGACTTCTTaGATATTTAACAGTGGCTAT | + |
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Preference number: 4 (lower is better) Translates to: FSVDDQIAWLLKEVSCLYGTRTS*IFNSGY Trigger: ATAGCCACTGTTAAATATGCAAGAAGTCCTGGTACC...ATAAAGACAAGACACTTCTTTAAGAAGCCAGGCTATTTGGTCATCAACTGAAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CAA 90 bp | TACATTTCTTTGAGCATCCATCCTCCCATGGCCCTGCCCATTCCGCATGGGGTTGGCAGCAGCAGAAATTaGGTACCAGGACTTCTTGCA | + |
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Preference number: 5 (lower is better) Translates to: YISLSIHPPMALPIPHGVGSSRN*VPGLLA Trigger: TGCAAGAAGTCCTGGTACCAAATTTCTGCTGCTGCC...AACCCCATGCGGAATGGGCAGGGCCATGGGAGGATGGATGCTCAAAGAAATGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CAA 90 bp | GTTTCCAAGTCTGTACATTTCTTTGAGCATCCATCCTCCCATGGCCCTGCCCATCAGTCCACATTGCTGTaGGGACCATCATATCTCGAA | + |
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Preference number: 5 (lower is better) Translates to: VSKSVHFFEHPSSHGPAHQSTLL*GPSYLE Trigger: TTCGAGATATGATGGTCCCAACAGCAATGTGGACTG...ATGGGCAGGGCCATGGGAGGATGGATGCTCAAAGAAATGTACAGACTTGGAAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CAA 90 bp | TATTCTCAACTGGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCTTCAGAGGTTCCCTGGGGAAGGTaGGGCTCCTGCTTCATCAGA | + |
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Preference number: 5 (lower is better) Translates to: YSQLELQQAQESFYLSSEVPWGR*GSCFIR Trigger: TCTGATGAAGCAGGAGCCCAACCTTCCCCAGGGAAC...CTCTGAAGACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCCAGTTGAGAATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS CCA 90 bp | GGATCCGCAGCTTTCGTGGGCAAATGTCCCGAGTTCACATTTCTTTaGAGTAAATACGCTACCAGAATCAGAAGCCATATCTCCACTCTG | + |
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Preference number: 5 (lower is better) Translates to: GSAAFVGKCPEFTFL*SKYATRIRSHISTL Trigger: CAGAGTGGAGATATGGCTTCTGATTCTGGTAGCGTATTTACTCCAAAGAAATGTGAACTCGGGACATTTGCCCACGAAAGCTGCGGATCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CAA 90 bp | GTTTCCAAGTCTGTACATTTCTTTGAGCATCCATCCTCCCATGGCCCTGCCCATGGGCGACATACACATTaGCTCTGCTCATGTTCATAT | + |
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Preference number: 5 (lower is better) Translates to: VSKSVHFFEHPSSHGPAHGRHTH*LCSCSY Trigger: ATATGAACATGAGCAGAGCAAATGTGTATGTCGCCC...ATGGGCAGGGCCATGGGAGGATGGATGCTCAAAGAAATGTACAGACTTGGAAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS GCA 90 bp | GTTCTGCACAGACGTTCCAGCAGGTGTATGGGCGACATACACATTTaGTCTGCTCATGTTCATATTGTTTGTGTTAAAACCTCCCAGGAG | + |
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Preference number: 5 (lower is better) Translates to: VLHRRSSRCMGDIHI*SAHVHIVCVKTSQE Trigger: CTCCTGGGAGGTTTTAACACAAACAATATGAACATGAGCAGAGCAAATGTGTATGTCGCCCATACACCTGCTGGAACGTCTGTGCAGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CAA 90 bp | GGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCTTCAGAGTAGAATGCCAATCACATCATCTGGATTaGAAAGCCAGTCTTGACCTC | + |
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Preference number: 5 (lower is better) Translates to: GTPTGTGELLFVFRVECQSHHLD*KASLDL Trigger: GAGGTCAAGACTGGCTTTCAAATCCAGATGATGTGA...TTGGCATTCTACTCTGAAGACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS CCA 90 bp | TGCTGTTGGGACCATCATATCTCGAACTTTGTACCTTATAGGAGTTaGCTGATTACATTTCTCCTGATTTTTGGTCTCACTTCCCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: CCWDHHISNFVPYRS*LITFLLIFGLTSPV Trigger: GACTGGGGAAGTGAGACCAAAAATCAGGAGAAATGTAATCAGCCAACTCCTATAAGGTACAAAGTTCGAGATATGATGGTCCCAACAGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS TCA 90 bp | TCAGAAAGTAATGTTTTCACATCATCTGGATTTGAAAGCCAGTCTTaGCCTCCAGTCCACATTGCTGTTGGGACCATCATATCTCGAACT | + |
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Preference number: 5 (lower is better) Translates to: SESNVFTSSGFESQS*PPVHIAVGTIISRT Trigger: AGTTCGAGATATGATGGTCCCAACAGCAATGTGGACTGGAGGTCAAGACTGGCTTTCAAATCCAGATGATGTGAAAACATTACTTTCTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CAA 90 bp | TCATTTGGAGCAGCTGGTCTAATAGCAGATGAAAATCTTAGTACTGATACACAGAGGTTGGAAATCCAGTaGCTAGCATCCCCAAGAAGA | + |
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Preference number: 5 (lower is better) Translates to: SFGAAGLIADENLSTDTQRLEIQ*LASPRR Trigger: TCTTCTTGGGGATGCTAGCAACTGGATTTCCAACCT...CTGTGTATCAGTACTAAGATTTTCATCTGCTATTAGACCAGCTGCTCCAAATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CAA 90 bp | TCATTTGGAGCAGCTGGTCTAATAGCAGATGAAAATCTTAGTACTGATACACAGAGCCCAGAACTCATCTaGATCTATGGAGAGGGTCTT | + |
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Preference number: 5 (lower is better) Translates to: SFGAAGLIADENLSTDTQSPELI*IYGEGL Trigger: AAGACCCTCTCCATAGATCAAGATGAGTTCTGGGCT...CTGTGTATCAGTACTAAGATTTTCATCTGCTATTAGACCAGCTGCTCCAAATGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CAA 90 bp | GGAACTCCAACAGGCACAGGAGAGCTTTTATTTGTCTTCAGAGTAGAATGCCAACTGCTCATGTTCATATaGTTTGTGTTAAAACCTCCC | + |
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Preference number: 5 (lower is better) Translates to: GTPTGTGELLFVFRVECQLLMFI*FVLKPP Trigger: GGGAGGTTTTAACACAAACAATATGAACATGAGCAG...TTGGCATTCTACTCTGAAGACAAATAAAAGCTCTCCTGTGCCTGTTGGAGTTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS-3UTR CAA 90 bp | TTTTCAGTTGATGACCAAATAGCCTGGCTTCTTAAAGAAGTGTCTTGTCTTTATCTGCCAAATAATACCTaGATCATCATATCTGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: FSVDDQIAWLLKEVSCLYLPNNT*IIISGS Trigger: GCTGCCAGATATGATGATCAAGGTATTATTTGGCAG...ATAAAGACAAGACACTTCTTTAAGAAGCCAGGCTATTTGGTCATCAACTGAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS CCA 72 bp | CCCCAAGAAGACCATGTTGCAGTAACACCACTGGCCTaGATCCTTCCTTCTTTAACCGTGTCTGTCCCCGAG | + |
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Preference number: 6 (lower is better) Translates to: PQEDHVAVTPLA*ILPSLTVSVPE Trigger: CTCGGGGACAGACACGGTTAAAGAAGGAAGGATCCAGGCCAGTGGTGTTACTGCAACATGGTCTTCTTGGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS TCA 72 bp | TGTGGAAAATGCAATAAAGCCCATGGTGGTGCCCTGTaGGTAGCCGACATAATAGACCTTTTTCTGGCCCGT | + |
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Preference number: 6 (lower is better) Translates to: CGKCNKAHGGAL*VADIIDLFLAR Trigger: ACGGGCCAGAAAAAGGTCTATTATGTCGGCTACTCACAGGGCACCACCATGGGCTTTATTGCATTTTCCACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS CCA 72 bp | TGGAGAATGTTCTGCACAGACGTTCCAGCAGGTGTATaGGCGACATACACATTTGCTCTGCTCATGTTCATA | + |
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Preference number: 6 (lower is better) Translates to: WRMFCTDVPAGV*ATYTFALLMFI Trigger: TATGAACATGAGCAGAGCAAATGTGTATGTCGCCCATACACCTGCTGGAACGTCTGTGCAGAACATTCTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS CAA 72 bp | CTGGATTTGAAAGCCAGTCTTGACCTCCAGTCCACATaGCTGTTGGGACCATCATATCTCGAACTTTGTACC | + |
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Preference number: 6 (lower is better) Translates to: LDLKASLDLQST*LLGPSYLELCT Trigger: GGTACAAAGTTCGAGATATGATGGTCCCAACAGCAATGTGGACTGGAGGTCAAGACTGGCTTTCAAATCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS GCA 72 bp | TACGCTACCAGAATCAGAAGCCATATCTCCACTCTGTaGGAAACAGTCCACACTCTTGACAAGATTTCTGAC | + |
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Preference number: 6 (lower is better) Translates to: YATRIRSHISTL*ETVHTLDKISD Trigger: GTCAGAAATCTTGTCAAGAGTGTGGACTGTTTCGCACAGAGTGGAGATATGGCTTCTGATTCTGGTAGCGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS GCA 72 bp | ACCCTTGTGTTTGATGATTTCGCTAACATTCATGAATaGTTCTGGATCCGCAGCTTTCGTGGGCAAATGTCC | + |
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Preference number: 6 (lower is better) Translates to: TLVFDDFANIHE*FWIRSFRGQMS Trigger: GGACATTTGCCCACGAAAGCTGCGGATCCAGAAGCATTCATGAATGTTAGCGAAATCATCAAACACAAGGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS CCA 72 bp | GCTTTCGTGGGCAAATGTCCCGAGTTCACATTTCTTTaGAGTAAATACGCTACCAGAATCAGAAGCCATATC | + |
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Preference number: 6 (lower is better) Translates to: AFVGKCPEFTFL*SKYATRIRSHI Trigger: GATATGGCTTCTGATTCTGGTAGCGTATTTACTCCAAAGAAATGTGAACTCGGGACATTTGCCCACGAAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS TCA 72 bp | CCACATGAGCCCACTCAGGAATGTTCTTGTGGTAGATaGGGTTGGTTACTTCAGAAAGTAATGTTTTCACAT | + |
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Preference number: 6 (lower is better) Translates to: PHEPTQECSCGR*GWLLQKVMFSH Trigger: ATGTGAAAACATTACTTTCTGAAGTAACCAACCTCATCTACCACAAGAACATTCCTGAGTGGGCTCATGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS CAA 72 bp | TTGTTTGTGTTAAAACCTCCCAGGAGTAAGATGATGTaGCTGCAGATTTGGTCAAGAATCATCTGGCCACAA | + |
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Preference number: 6 (lower is better) Translates to: LFVLKPPRSKMM*LQIWSRIIWPQ Trigger: TTGTGGCCAGATGATTCTTGACCAAATCTGCAGCAACATCATCTTACTCCTGGGAGGTTTTAACACAAACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS CAA 72 bp | TTACTTCAGAAAGTAATGTTTTCACATCATCTGGATTaGAAAGCCAGTCTTGACCTCCAGTCCACATTGCTG | + |
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Preference number: 6 (lower is better) Translates to: LLQKVMFSHHLD*KASLDLQSTLL Trigger: CAGCAATGTGGACTGGAGGTCAAGACTGGCTTTCAAATCCAGATGATGTGAAAACATTACTTTCTGAAGTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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| CDS CCA 72 bp | GACCATCATATCTCGAACTTTGTACCTTATAGGAGTTaGCTGATTACATTTCTCCTGATTTTTGGTCTCACT | + |
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Preference number: 6 (lower is better) Translates to: DHHISNFVPYRS*LITFLLIFGLT Trigger: AGTGAGACCAAAAATCAGGAGAAATGTAATCAGCCAACTCCTATAAGGTACAAAGTTCGAGATATGATGGTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025685.8 |
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