Pregenerated sensors for LIPI (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032948Ensembl transcript IDs: ENSMUST00000062721.11
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGTTTTTCCATAATAGAGATGTACAGTGATATTGAATTTGCTCCATaGCACAGCACTAAACTTCCCATTTCCCGTAGGAGCTGTGCTTTT | + |
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Preference number: 1 (lower is better) Translates to: CFSIIEMYSDIEFAP*HSTKLPISRRSCAF Trigger: AAAAGCACAGCTCCTACGGGAAATGGGAAGTTTAGTGCTGTGCCATGGAGCAAATTCAATATCACTGTACATCTCTATTATGGAAAAACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| 3UTR-3UTR CCA 90 bp | CATATTCACAAGGTTCACACGAACCCAGCTTATTTCACTAAACAATACATTTTCATTGAATTTGCTCCATaGCACAGCACTAAACTTCCC | + |
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Preference number: 2 (lower is better) Translates to: HIHKVHTNPAYFTKQYIFIEFAP*HSTKLP Trigger: GGGAAGTTTAGTGCTGTGCCATGGAGCAAATTCAAT...GAAAATGTATTGTTTAGTGAAATAAGCTGGGTTCGTGTGAACCTTGTGAATATG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| 3UTR-3UTR CAA 90 bp | ATTGAGCACAGTAGCATAACACCCATATGTGCAGTGCATAACAAGTTCTTCATACAGTGGCTGGGTACATaGCTGCAGTTGACAAATTTG | + |
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Preference number: 3 (lower is better) Translates to: IEHSSITPICAVHNKFFIQWLGT*LQLTNL Trigger: CAAATTTGTCAACTGCAGCAATGTACCCAGCCACTG...TATGAAGAACTTGTTATGCACTGCACATATGGGTGTTATGCTACTGTGCTCAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| 3UTR CCA 72 bp | ATAATAGAGATGTACAGTGATATTGAATTTGCTCCATaGCACAGCACTAAACTTCCCATTTCCCGTAGGAGC | + |
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Preference number: 3 (lower is better) Translates to: IIEMYSDIEFAP*HSTKLPISRRS Trigger: GCTCCTACGGGAAATGGGAAGTTTAGTGCTGTGCCATGGAGCAAATTCAATATCACTGTACATCTCTATTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| 3UTR-3UTR CAA 90 bp | CCATATGTGCAGTGCATAACAAGTTCTTCATATTCACAAGGTTCACACGAACCCAGATGTACAGTGATATaGAATTTGCTCCATGGCACA | + |
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Preference number: 3 (lower is better) Translates to: PYVQCITSSSYSQGSHEPRCTVI*NLLHGT Trigger: TGTGCCATGGAGCAAATTCAATATCACTGTACATCT...GGGTTCGTGTGAACCTTGTGAATATGAAGAACTTGTTATGCACTGCACATATGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR CCA 90 bp | ATATTGAATTTGCTCCATGGCACAGCACTAAACTTCCCATTTCCCGTAGGAGCTCCTAGAAAGCCACACTaGGGTGGAACCAAAGGGCCT | + |
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Preference number: 4 (lower is better) Translates to: ILNLLHGTALNFPFPVGAPRKPH*GGTKGP Trigger: AGGCCCTTTGGTTCCACCCCAGTGTGGCTTTCTAGG...AGCTCCTACGGGAAATGGGAAGTTTAGTGCTGTGCCATGGAGCAAATTCAATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR TCA 90 bp | CTCCATGGCACAGCACTAAACTTCCCATTTCCCGTAGGAGCTGTGCTTTTTACAACAAATCCACTAATATaGGCCCCTAAGCTCATGCCA | + |
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Preference number: 4 (lower is better) Translates to: LHGTALNFPFPVGAVLFTTNPLI*APKLMP Trigger: TGGCATGAGCTTAGGGGCTCATATTAGTGGATTTGT...TGTAAAAAGCACAGCTCCTACGGGAAATGGGAAGTTTAGTGCTGTGCCATGGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR GCA 90 bp | CTCCATGGCACAGCACTAAACTTCCCATTTCCCGTAGGAGCTGTGCTTTTTACAGCTTGTTTCAAAAGCTaGGAGGAACAAGTAAATGGC | + |
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Preference number: 4 (lower is better) Translates to: LHGTALNFPFPVGAVLFTACFKS*EEQVNG Trigger: GCCATTTACTTGTTCCTCGCAGCTTTTGAAACAAGC...TGTAAAAAGCACAGCTCCTACGGGAAATGGGAAGTTTAGTGCTGTGCCATGGAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR CCA 90 bp | CCATTTCCCGTAGGAGCTGTGCTTTTTACATATCCACTTATTATTAAGCTAAGCAAAGCCACACTGGGGTaGAACCAAAGGGCCTGTACC | + |
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Preference number: 4 (lower is better) Translates to: PFPVGAVLFTYPLIIKLSKATLG*NQRACT Trigger: GGTACAGGCCCTTTGGTTCCACCCCAGTGTGGCTTT...GCTTAGCTTAATAATAAGTGGATATGTAAAAAGCACAGCTCCTACGGGAAATGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR TCA 90 bp | CTCCATGGCACAGCACTAAACTTCCCATTTCCCGTAGGAGCTGTGCTTTTTACATTACATTCATCTGGTTaGAGATCTACCCTTGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: LHGTALNFPFPVGAVLFTLHSSG*RSTLVP Trigger: AGGAACAAGGGTAGATCTTCAACCAGATGAATGTAA...TGTAAAAAGCACAGCTCCTACGGGAAATGGGAAGTTTAGTGCTGTGCCATGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR CCA 90 bp | TACAGTGATATTGAATTTGCTCCATGGCACAGCACTAAACTTCCCATTTCCCGTCTTTCTAGAAAATTGTaGTCCAGCTGGGTCAAGACC | + |
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Preference number: 4 (lower is better) Translates to: YSDIEFAPWHSTKLPISRLSRKL*SSWVKT Trigger: GGTCTTGACCCAGCTGGACCACAATTTTCTAGAAAG...ACGGGAAATGGGAAGTTTAGTGCTGTGCCATGGAGCAAATTCAATATCACTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR TCA 90 bp | ATTGAGCACAGTAGCATAACACCCATATGTGCAGTGCATAACAAGTTCTTCATAGTAGGACAACCTGGCTaGTGTTTTCCTCCATTTGGA | + |
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Preference number: 4 (lower is better) Translates to: IEHSSITPICAVHNKFFIVGQPG*CFPPFG Trigger: TCCAAATGGAGGAAAACATCAGCCAGGTTGTCCTAC...TATGAAGAACTTGTTATGCACTGCACATATGGGTGTTATGCTACTGTGCTCAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR CCA 90 bp | CATGGCACAGCACTAAACTTCCCATTTCCCGTAGGAGCTGTGCTTTTTACATATTCAAGTGATGCCCCATaGATCAAAAGATTCTCAATG | + |
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Preference number: 4 (lower is better) Translates to: HGTALNFPFPVGAVLFTYSSDAP*IKRFSM Trigger: CATTGAGAATCTTTTGATCCATGGGGCATCACTTGA...ATATGTAAAAAGCACAGCTCCTACGGGAAATGGGAAGTTTAGTGCTGTGCCATG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR TCA 90 bp | CCATATGTGCAGTGCATAACAAGTTCTTCATATTCACAAGGTTCACACGAACCCCTTCTCATAGAGTGTTaGGTATTCCAAATCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: PYVQCITSSSYSQGSHEPLLIEC*VFQISK Trigger: CTTGGAGATTTGGAATACTCAACACTCTATGAGAAG...GGGTTCGTGTGAACCTTGTGAATATGAAGAACTTGTTATGCACTGCACATATGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR GCA 90 bp | CATGGCACAGCACTAAACTTCCCATTTCCCGTAGGAGCTGTGCTTTTTACATATGATTATCAAATGGCTTaGTCTTCTCATAGAGTGTTG | + |
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Preference number: 4 (lower is better) Translates to: HGTALNFPFPVGAVLFTYDYQMA*SSHRVL Trigger: CAACACTCTATGAGAAGAGCAAGCCATTTGATAATC...ATATGTAAAAAGCACAGCTCCTACGGGAAATGGGAAGTTTAGTGCTGTGCCATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR TCA 90 bp | CATATTCACAAGGTTCACACGAACCCAGCTTATTTCACTAAACAATACATTTTCCTTGGCGTTGCCCCTTaGGTACATCAGCAGATTTAT | + |
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Preference number: 4 (lower is better) Translates to: HIHKVHTNPAYFTKQYIFLGVAP*VHQQIY Trigger: ATAAATCTGCTGATGTACTCAAGGGGCAACGCCAAG...GAAAATGTATTGTTTAGTGAAATAAGCTGGGTTCGTGTGAACCTTGTGAATATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR TCA 90 bp | ATTGAGCACAGTAGCATAACACCCATATGTGCAGTGCATAACAAGTTCTTCATAGGAACGACAAGGAAATaGAACAAAGTTGCAGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: IEHSSITPICAVHNKFFIGTTRK*NKVAAC Trigger: ACAAGCTGCAACTTTGTTTCATTTCCTTGTCGTTCC...TATGAAGAACTTGTTATGCACTGCACATATGGGTGTTATGCTACTGTGCTCAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR TCA 90 bp | GGCAAGGAGAAACGAACAGTTTTAGGATATATTCAGGATGAGTTTTGTCATGCATTCCATAGTTTAGCTTaGTTACCAAGTCTTGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: GKEKRTVLGYIQDEFCHAFHSLA*LPSLGQ Trigger: CTGCCCAAGACTTGGTAATCAAGCTAAACTATGGAA...TGCATGACAAAACTCATCCTGAATATATCCTAAAACTGTTCGTTTCTCCTTGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR CCA 90 bp | GGCAAGGAGAAACGAACAGTTTTAGGATATATTCAGGATGAGTTTTGTCATGCATTGATTACCAAGTCTTaGGCAGGAGTCTTTGTAAAG | + |
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Preference number: 4 (lower is better) Translates to: GKEKRTVLGYIQDEFCHALITKS*AGVFVK Trigger: CTTTACAAAGACTCCTGCCCAAGACTTGGTAATCAA...TGCATGACAAAACTCATCCTGAATATATCCTAAAACTGTTCGTTTCTCCTTGCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR GCA 90 bp | TGGCTGGGTACATTGCTGCAGTTGACAAATTTGTTAGTCCATAATTTTAAACTGACTAGTATCCAAAAATaGAGTGGTTCTAAGAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: WLGTLLQLTNLLVHNFKLTSIQK*SGSKRP Trigger: TGGCCTCTTAGAACCACTGCATTTTTGGATACTAGT...CAGTTTAAAATTATGGACTAACAAATTTGTCAACTGCAGCAATGTACCCAGCCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR CCA 90 bp | TGGCTGGGTACATTGCTGCAGTTGACAAATTTGTTAGTCCATAATTTTAAACTGCACAGTAAGGATTTGTaGACTGAAAGTATGTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: WLGTLLQLTNLLVHNFKLHSKDL*TESMSS Trigger: GCTTGACATACTTTCAGTCCACAAATCCTTACTGTG...CAGTTTAAAATTATGGACTAACAAATTTGTCAACTGCAGCAATGTACCCAGCCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR TCA 90 bp | CATATTCACAAGGTTCACACGAACCCAGCTTATTTCACTAAACAATACATTTTCGTCTTTCTGGATATGTaGGTGATTTTAACACAAGGC | + |
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Preference number: 4 (lower is better) Translates to: HIHKVHTNPAYFTKQYIFVFLDM*VILTQG Trigger: GCCTTGTGTTAAAATCACTCACATATCCAGAAAGAC...GAAAATGTATTGTTTAGTGAAATAAGCTGGGTTCGTGTGAACCTTGTGAATATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR TCA 90 bp | CATATTCACAAGGTTCACACGAACCCAGCTTATTTCACTAAACAATACATTTTCCTAAGCTCATGCCAATaGAATGAAAATTGTCAAGTG | + |
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Preference number: 4 (lower is better) Translates to: HIHKVHTNPAYFTKQYIFLSSCQ*NENCQV Trigger: CACTTGACAATTTTCATTTCATTGGCATGAGCTTAG...GAAAATGTATTGTTTAGTGAAATAAGCTGGGTTCGTGTGAACCTTGTGAATATG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| 3UTR CAA 72 bp | TGCATTCTAAAACAGTGGCTGGGTACATTGCTGCAGTaGACAAATTTGTTAGTCCATAATTTTAAACTGGAT | + |
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Preference number: 4 (lower is better) Translates to: CILKQWLGTLLQ*TNLLVHNFKLD Trigger: ATCCAGTTTAAAATTATGGACTAACAAATTTGTCAACTGCAGCAATGTACCCAGCCACTGTTTTAGAATGCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS CCA 90 bp | ATCTTCCTGTTTCAAAAAGGCTTTAGTAAACCTAGAAAGCCACACTaGGGTGGAACCAAAGGGCCTGTACCCATGAATAATCCAGACGGT | + |
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Preference number: 5 (lower is better) Translates to: IFLFQKGFSKPRKPH*GGTKGPVPMNNPDG Trigger: ACCGTCTGGATTATTCATGGGTACAGGCCCTTTGGTTCCACCCCAGTGTGGCTTTCTAGGTTTACTAAAGCCTTTTTGAAACAGGAAGAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR CAA 90 bp | ATATTGAATTTGCTCCATGGCACAGCACTAAACTTCCCATTTCCCGTAGGAGCTTGGCTTTCTAGAAAATaGTGGTCCAGCTGGGTCAAG | + |
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Preference number: 5 (lower is better) Translates to: ILNLLHGTALNFPFPVGAWLSRK*WSSWVK Trigger: CTTGACCCAGCTGGACCACAATTTTCTAGAAAGCCA...AGCTCCTACGGGAAATGGGAAGTTTAGTGCTGTGCCATGGAGCAAATTCAATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR CAA 90 bp | ATATTGAATTTGCTCCATGGCACAGCACTAAACTTCCCATTTCCCGTAGGAGCTGGGTTGAAACGGGTGTaGAGTGAGTTATTAGATTCA | + |
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Preference number: 5 (lower is better) Translates to: ILNLLHGTALNFPFPVGAGLKRV*SELLDS Trigger: TGAATCTAATAACTCACTCAACACCCGTTTCAACCC...AGCTCCTACGGGAAATGGGAAGTTTAGTGCTGTGCCATGGAGCAAATTCAATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS-3UTR CAA 90 bp | ATTGAGCACAGTAGCATAACACCCATATGTGCAGTGCATAACAAGTTCTTCATAAAACAAAGTTGCAGCTaGTTTCAAAAGCTGCGAGGA | + |
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Preference number: 5 (lower is better) Translates to: IEHSSITPICAVHNKFFIKQSCS*FQKLRG Trigger: TCCTCGCAGCTTTTGAAACAAGCTGCAACTTTGTTT...TATGAAGAACTTGTTATGCACTGCACATATGGGTGTTATGCTACTGTGCTCAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS TCA 90 bp | CACACACAAACCATTCTTGTAATCTTTGTAGGAACGACAAGGAAATaGAACAAAGTTGCAGCTTGTTTCAAAAGCTGCGAGGAACAAGTA | + |
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Preference number: 5 (lower is better) Translates to: HTQTILVIFVGTTRK*NKVAACFKSCEEQV Trigger: TACTTGTTCCTCGCAGCTTTTGAAACAAGCTGCAACTTTGTTTCATTTCCTTGTCGTTCCTACAAAGATTACAAGAATGGTTTGTGTGTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS TCA 90 bp | TGCGCGAAATGCTCACAATGTCATTTACGAACTGAACAAGAATCTTaGCTTCTTGAAGATTATCAAATGGCTTGCTCTTCTCATAGAGTG | + |
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Preference number: 5 (lower is better) Translates to: CAKCSQCHLRTEQES*LLEDYQMACSSHRV Trigger: CACTCTATGAGAAGAGCAAGCCATTTGATAATCTTCAAGAAGTCAAGATTCTTGTTCAGTTCGTAAATGACATTGTGAGCATTTCGCGCA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS GCA 90 bp | CATTCTTGTAATCTTTGTAGGAACGACAAGGAAATGAAACAAAGTTaGAGCTTGTTTCAAAAGCTGCGAGGAACAAGTAAATGGCTCTCT | + |
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Preference number: 5 (lower is better) Translates to: HSCNLCRNDKEMKQS*SLFQKLRGTSKWLS Trigger: AGAGAGCCATTTACTTGTTCCTCGCAGCTTTTGAAACAAGCTGCAACTTTGTTTCATTTCCTTGTCGTTCCTACAAAGATTACAAGAATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS TCA 72 bp | TTCAAAGAGTGGCTCTGCACACTTGGCGTTGCCCCTTaGGTACATCAGCAGATTTATCTTTACTTTGGGACA | + |
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Preference number: 6 (lower is better) Translates to: FKEWLCTLGVAP*VHQQIYLYFGT Trigger: TGTCCCAAAGTAAAGATAAATCTGCTGATGTACTCAAGGGGCAACGCCAAGTGTGCAGAGCCACTCTTTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS CCA 72 bp | CTAACCGCTCTAGAATACATGAAAGTCGTAGCGCCCTaGTTCCAGTCTACAACAATGAGATTCACATCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LTALEYMKVVAP*FQSTTMRFTSS Trigger: GGAAGATGTGAATCTCATTGTTGTAGACTGGAACCAGGGCGCTACGACTTTCATGTATTCTAGAGCGGTTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS CAA 72 bp | ATTCAAAGAGTGGCTCTGCACACTTGGCGTTGCCCCTaGAGTACATCAGCAGATTTATCTTTACTTTGGGAC | + |
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Preference number: 6 (lower is better) Translates to: IQRVALHTWRCP*STSADLSLLWD Trigger: GTCCCAAAGTAAAGATAAATCTGCTGATGTACTCAAGGGGCAACGCCAAGTGTGCAGAGCCACTCTTTGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS CAA 72 bp | ATCCAGACGGTTTTCTTCGCTGGGTTGAAACGGGTGTaGAGTGAGTTATTAGATTCAAAGAGTGGCTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: IQTVFFAGLKRV*SELLDSKSGSA Trigger: TGCAGAGCCACTCTTTGAATCTAATAACTCACTCAACACCCGTTTCAACCCAGCGAAGAAAACCGTCTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS CAA 90 bp | CGGGTGTTGAGTGAGTTATTAGATTCAAAGAGTGGCTCTGCACACTaGGCGTTGCCCCTTGAGTACATCAGCAGATTTATCTTTACTTTG | + |
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Preference number: 6 (lower is better) Translates to: RVLSELLDSKSGSAH*ALPLEYISRFIFTL Trigger: CAAAGTAAAGATAAATCTGCTGATGTACTCAAGGGGCAACGCCAAGTGTGCAGAGCCACTCTTTGAATCTAATAACTCACTCAACACCCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS CAA 72 bp | AGTGAGTTATTAGATTCAAAGAGTGGCTCTGCACACTaGGCGTTGCCCCTTGAGTACATCAGCAGATTTATC | + |
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Preference number: 6 (lower is better) Translates to: SELLDSKSGSAH*ALPLEYISRFI Trigger: GATAAATCTGCTGATGTACTCAAGGGGCAACGCCAAGTGTGCAGAGCCACTCTTTGAATCTAATAACTCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS CCA 72 bp | TTTCAAAAAGGCTTTAGTAAACCTAGAAAGCCACACTaGGGTGGAACCAAAGGGCCTGTACCCATGAATAAT | + |
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Preference number: 6 (lower is better) Translates to: FQKGFSKPRKPH*GGTKGPVPMNN Trigger: ATTATTCATGGGTACAGGCCCTTTGGTTCCACCCCAGTGTGGCTTTCTAGGTTTACTAAAGCCTTTTTGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS CAA 72 bp | TCAATGTGCCCCGATGGCTCTCCAATACCCAAACTTTaGATATCAGTGTGGATGACATCTACAAACTTTGCA | + |
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Preference number: 6 (lower is better) Translates to: SMCPDGSPIPKL*ISVWMTSTNFA Trigger: TGCAAAGTTTGTAGATGTCATCCACACTGATATCAAAAGTTTGGGTATTGGAGAGCCATCGGGGCACATTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS CAA 90 bp | TTGAGTGAGTTATTAGATTCAAAGAGTGGCTCTGCACACTTGGCGTaGCCCCTTGAGTACATCAGCAGATTTATCTTTACTTTGGGACAA | + |
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Preference number: 6 (lower is better) Translates to: LSELLDSKSGSAHLA*PLEYISRFIFTLGQ Trigger: TTGTCCCAAAGTAAAGATAAATCTGCTGATGTACTCAAGGGGCAACGCCAAGTGTGCAGAGCCACTCTTTGAATCTAATAACTCACTCAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS TCA 72 bp | ACCATTCTTGTAATCTTTGTAGGAACGACAAGGAAATaGAACAAAGTTGCAGCTTGTTTCAAAAGCTGCGAG | + |
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Preference number: 6 (lower is better) Translates to: TILVIFVGTTRK*NKVAACFKSCE Trigger: CTCGCAGCTTTTGAAACAAGCTGCAACTTTGTTTCATTTCCTTGTCGTTCCTACAAAGATTACAAGAATGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS GCA 72 bp | AATCTTTGTAGGAACGACAAGGAAATGAAACAAAGTTaGAGCTTGTTTCAAAAGCTGCGAGGAACAAGTAAA | + |
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Preference number: 6 (lower is better) Translates to: NLCRNDKEMKQS*SLFQKLRGTSK Trigger: TTTACTTGTTCCTCGCAGCTTTTGAAACAAGCTGCAACTTTGTTTCATTTCCTTGTCGTTCCTACAAAGATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS CAA 72 bp | GAAGATTATCAAATGGCTTGCTCTTCTCATAGAGTGTaGAGTATTCCAAATCTCCAAGGTCATTTAATAAAC | + |
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Preference number: 6 (lower is better) Translates to: EDYQMACSSHRV*SIPNLQGHLIN Trigger: GTTTATTAAATGACCTTGGAGATTTGGAATACTCAACACTCTATGAGAAGAGCAAGCCATTTGATAATCTTC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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| CDS CAA 72 bp | AATGTCATTTACGAACTGAACAAGAATCTTGACTTCTaGAAGATTATCAAATGGCTTGCTCTTCTCATAGAG | + |
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Preference number: 6 (lower is better) Translates to: NVIYELNKNLDF*KIIKWLALLIE Trigger: CTCTATGAGAAGAGCAAGCCATTTGATAATCTTCAAGAAGTCAAGATTCTTGTTCAGTTCGTAAATGACATT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062721.11 |
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