Pregenerated sensors for LIPF (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024768

Ensembl transcript IDs: ENSMUST00000025680.5

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CCAGGATGTCATGGCCACCGTTCCACACTGCAATTGGCACGGTCATaGCTGACACATCATAGTAGGGAGGCGTTTTCTGATTGTAGTGTA	+
Preference number: 5 (lower is better) Translates to: PGCHGHRSTLQLARS*LTHHSREAFSDCSV Trigger: TACACTACAATCAGAAAACGCCTCCCTACTATGATGTGTCAGCCATGACCGTGCCAATTGCAGTGTGGAACGGTGGCCATGACATCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS GCA 90 bp	ACTTCCCCAGTTATAGGCTTGAAGCTTCCCAGATTTAGCAAGCTGTaGCCAGTGGAAAAGGTCTTGAGTAGATGTTCCTGCTGGATTATG	+
Preference number: 5 (lower is better) Translates to: TSPVIGLKLPRFSKL*PVEKVLSRCSCWIM Trigger: CATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAGCTTGCTAAATCTGGGAAGCTTCAAGCCTATAACTGGGGAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS GCA 90 bp	GGCAGATTTGTAATCCAGTTTGTGGCTGATGCAATCAAACCATGCTaGAAATATGCCACAGGTCTCTTGCCGATATTCTCAGAATTTTTC	+
Preference number: 5 (lower is better) Translates to: GRFVIQFVADAIKPC*KYATGLLPIFSEFF Trigger: GAAAAATTCTGAGAATATCGGCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS GCA 90 bp	TTTGGCAGATTTGTAATCCAGTTTGTGGCTGATGCAATCAAACCATaGTGCAAATATGCCACAGGTCTCTTGCCGATATTCTCAGAATTT	+
Preference number: 5 (lower is better) Translates to: FGRFVIQFVADAIKP*CKYATGLLPIFSEF Trigger: AAATTCTGAGAATATCGGCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAATCTGCCAAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS CCA 72 bp	CATGGCCACCGTTCCACACTGCAATTGGCACGGTCATaGCTGACACATCATAGTAGGGAGGCGTTTTCTGAT	+
Preference number: 6 (lower is better) Translates to: HGHRSTLQLARS*LTHHSREAFSD Trigger: ATCAGAAAACGCCTCCCTACTATGATGTGTCAGCCATGACCGTGCCAATTGCAGTGTGGAACGGTGGCCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS CAA 72 bp	TATGGTACAGAAGGTTGGGGAGTTTGGGAAGCAGCATaGCGACATCTTGGGGATCAGCCAGGATGTCATGGC	+
Preference number: 6 (lower is better) Translates to: YGTEGWGVWEAA*RHLGDQPGCHG Trigger: GCCATGACATCCTGGCTGATCCCCAAGATGTCGCAATGCTGCTTCCCAAACTCCCCAACCTTCTGTACCATA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS TCA 72 bp	GCCACCGTTCCACACTGCAATTGGCACGGTCATGGCTaGCACATCATAGTAGGGAGGCGTTTTCTGATTGTA	+
Preference number: 6 (lower is better) Translates to: ATVPHCNWHGHG*HIIVGRRFLIV Trigger: TACAATCAGAAAACGCCTCCCTACTATGATGTGTCAGCCATGACCGTGCCAATTGCAGTGTGGAACGGTGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS CCA 72 bp	GATTGTAGGGAAGAATCTCCTTATGGTACAGAAGGTTaGGGAGTTTGGGAAGCAGCATTGCGACATCTTGGG	+
Preference number: 6 (lower is better) Translates to: DCREESPYGTEG*GVWEAALRHLG Trigger: CCCAAGATGTCGCAATGCTGCTTCCCAAACTCCCCAACCTTCTGTACCATAAGGAGATTCTTCCCTACAATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS CAA 72 bp	TTCTGCCATCATGGTAACTATCTCATTGTAAACCTCTaGAGGCGCATCCATCGCCCAGATGAAGTCCAGGTG	+
Preference number: 6 (lower is better) Translates to: FCHHGNYLIVNL*RRIHRPDEVQV Trigger: CACCTGGACTTCATCTGGGCGATGGATGCGCCTCAAGAGGTTTACAATGAGATAGTTACCATGATGGCAGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS TCA 72 bp	CCAGATTTAGCAAGCTGTGCCCAGTGGAAAAGGTCTTaGGTAGATGTTCCTGCTGGATTATGCCCTAGATAC	+
Preference number: 6 (lower is better) Translates to: PDLASCAQWKRS*VDVPAGLCPRY Trigger: GTATCTAGGGCATAATCCAGCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAGCTTGCTAAATCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS TCA 72 bp	CATTGTAAACCTCTTGAGGCGCATCCATCGCCCAGATaGAGTCCAGGTGATTGTAGGGAAGAATCTCCTTAT	+
Preference number: 6 (lower is better) Translates to: HCKPLEAHPSPR*SPGDCREESPY Trigger: ATAAGGAGATTCTTCCCTACAATCACCTGGACTTCATCTGGGCGATGGATGCGCCTCAAGAGGTTTACAATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS GCA 72 bp	GTTATAGGCTTGAAGCTTCCCAGATTTAGCAAGCTGTaGCCAGTGGAAAAGGTCTTGAGTAGATGTTCCTGC	+
Preference number: 6 (lower is better) Translates to: VIGLKLPRFSKL*PVEKVLSRCSC Trigger: GCAGGAACATCTACTCAAGACCTTTTCCACTGGGCACAGCTTGCTAAATCTGGGAAGCTTCAAGCCTATAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS GCA 72 bp	GTAATCCAGTTTGTGGCTGATGCAATCAAACCATGCTaGAAATATGCCACAGGTCTCTTGCCGATATTCTCA	+
Preference number: 6 (lower is better) Translates to: VIQFVADAIKPC*KYATGLLPIFS Trigger: TGAGAATATCGGCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025680.5
CDS GCA 72 bp	TTTGTAATCCAGTTTGTGGCTGATGCAATCAAACCATaGTGCAAATATGCCACAGGTCTCTTGCCGATATTC	+
Preference number: 6 (lower is better) Translates to: FVIQFVADAIKP*CKYATGLLPIF Trigger: GAATATCGGCAAGAGACCTGTGGCATATTTGCAGCATGGTTTGATTGCATCAGCCACAAACTGGATTACAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025680.5

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