Pregenerated sensors for LIPA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024781Ensembl transcript IDs: ENSMUST00000049572.15, ENSMUST00000178114.2
Found 99 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATGCAGGCACCGTCACGGCAGCCATATTCGCTTCTGGCAAATCAGTaGTTTGTCCCTCCACAGAATGTTTCTCCACAGAAAAGTGACCAG | + |
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Preference number: 1 (lower is better) Translates to: MQAPSRQPYSLLANQ*FVPPQNVSPQKSDQ Trigger: CTGGTCACTTTTCTGTGGAGAAACATTCTGTGGAGGGACAAACCACTGATTTGCCAGAAGCGAATATGGCTGCCGTGACGGTGCCTGCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR CCA 90 bp | GCTTTAGCTTCATGCAGGCACCGTCACGGCAGCCATATTCGCTTCTaGCAAATCAGTGGTTTGTCCCTCCACAGAATGTTTCTCCACAGA | + |
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Preference number: 1 (lower is better) Translates to: ALASCRHRHGSHIRF*QISGLSLHRMFLHR Trigger: TCTGTGGAGAAACATTCTGTGGAGGGACAAACCACTGATTTGCCAGAAGCGAATATGGCTGCCGTGACGGTGCCTGCATGAAGCTAAAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR TCA 90 bp | TTTCAAAAAGTAAGATGGGAAGTAACTGAGGAAGACACCTTGATGTaGGCCATTACCTCCACACAAGGGCCAGAACACAGCCCACACACA | + |
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Preference number: 1 (lower is better) Translates to: FQKVRWEVTEEDTLM*AITSTQGPEHSPHT Trigger: TGTGTGTGGGCTGTGTTCTGGCCCTTGTGTGGAGGTAATGGCTCACATCAAGGTGTCTTCCTCAGTTACTTCCCATCTTACTTTTTGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR TCA 90 bp | TACAACACTGATTCTCAAAGCGAAATTCCTGAGCCGAGCTCTGTCTaGAAACATCATTTGTGTGAAAGGGAATCGGACCACTTGCCACCA | + |
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Preference number: 1 (lower is better) Translates to: YNTDSQSEIPEPSSV*KHHLCERESDHLPP Trigger: TGGTGGCAAGTGGTCCGATTCCCTTTCACACAAATGATGTTTTCAGACAGAGCTCGGCTCAGGAATTTCGCTTTGAGAATCAGTGTTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR TCA 90 bp | AAATCAGTGGTTTGTCCCTCCACAGAATGTTTCTCCACAGAAAAGTaGCCAGACTACACATTCGGAACCAACAGAGCTCATTGTATTAAT | + |
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Preference number: 1 (lower is better) Translates to: KSVVCPSTECFSTEK*PDYTFGTNRAHCIN Trigger: ATTAATACAATGAGCTCTGTTGGTTCCGAATGTGTAGTCTGGTCACTTTTCTGTGGAGAAACATTCTGTGGAGGGACAAACCACTGATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR CCA 90 bp | CTGCCTGTCTGTATGAGCCAATATCAAGTAATATTCCTGCATCCGTaGTACCTAATATCAGAATATCAGAAAACTTATCAACTGTCTAGT | + |
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Preference number: 1 (lower is better) Translates to: LPVCMSQYQVIFLHP*YLISEYQKTYQLSS Trigger: ACTAGACAGTTGATAAGTTTTCTGATATTCTGATATTAGGTACCACGGATGCAGGAATATTACTTGATATTGGCTCATACAGACAGGCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGGGCTTCCTGTACGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACGAGACAGGCAGATCCTaGAGGCTCATGGGCCAACCA | + |
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Preference number: 2 (lower is better) Translates to: CGLPVRRSKAGSVKHCAYETGRS*RLMGQP Trigger: TGGTTGGCCCATGAGCCTCCAGGATCTGCCTGTCTC...GTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCGTACAGGAAGCCCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGGGCTTCCTGTACGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACGAGGCAATGATTCGGTaGGTGAAGGGCTTGCTACAC | + |
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Preference number: 2 (lower is better) Translates to: CGLPVRRSKAGSVKHCAYEAMIR*VKGLLH Trigger: GTGTAGCAAGCCCTTCACTCACCGAATCATTGCCTC...GTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCGTACAGGAAGCCCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CCA 90 bp | TGGAGAACTAGGATTGTAGGTTTGCACTGCCACATGAAGCTCAGAGCAAGGAGCGGTAAAAATGCCGGCTaGGACAGACACCCCATTCCA | + |
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Preference number: 2 (lower is better) Translates to: WRTRIVGLHCHMKLRARSGKNAG*DRHPIP Trigger: TGGAATGGGGTGTCTGTCCCAGCCGGCATTTTTACC...GCTCCTTGCTCTGAGCTTCATGTGGCAGTGCAAACCTACAATCCTAGTTCTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR CAA 90 bp | AGGCACCGTCACGGCAGCCATATTCGCTTCTGGCAAATCAGTGGTTaGTCCCTCCACAGAATGTTTCTCCACAGAAAAGTGACCAGACTA | + |
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Preference number: 2 (lower is better) Translates to: RHRHGSHIRFWQISG*SLHRMFLHRKVTRL Trigger: TAGTCTGGTCACTTTTCTGTGGAGAAACATTCTGTGGAGGGACAAACCACTGATTTGCCAGAAGCGAATATGGCTGCCGTGACGGTGCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR TCA 90 bp | GGTTTGCACTGCCACATGAAGCTCAGAGCAAGGAGCTTTTCATCGTGTGTTCAGCTTGCTACACAAGCATaGGAACCTGAGTTCCTGTCC | + |
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Preference number: 2 (lower is better) Translates to: GLHCHMKLRARSFSSCVQLATQA*EPEFLS Trigger: GGACAGGAACTCAGGTTCTCATGCTTGTGTAGCAAG...CTGAACACACGATGAAAAGCTCCTTGCTCTGAGCTTCATGTGGCAGTGCAAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR TCA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAACTGAGGAAGACACCTTaGTGTGAGCCATTACCTCCA | + |
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Preference number: 2 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQLRKTP*CEPLPP Trigger: TGGAGGTAATGGCTCACATCAAGGTGTCTTCCTCAG...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR GCA 90 bp | TCTCCACAGAAAAGTGACCAGACTACACATTCGGAACCAACAGAGCTCATTGTAGAAATGTCCTGTGTGTaGTCACTTGTGTTGGGCAGG | + |
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Preference number: 2 (lower is better) Translates to: SPQKSDQTTHSEPTELIVEMSCV*SLVLGR Trigger: CCTGCCCAACACAAGTGAGCACACACAGGACATTTC...TACAATGAGCTCTGTTGGTTCCGAATGTGTAGTCTGGTCACTTTTCTGTGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CCA 90 bp | CGGCAGCCATATTCGCTTCTGGCAAATCAGTGGTTTGTCCCTCCACAGAATGTTTATTCCTGGAGAAGCTaGGATTACACTGGATTTCAC | + |
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Preference number: 2 (lower is better) Translates to: RQPYSLLANQWFVPPQNVYSWRS*DYTGFH Trigger: GTGAAATCCAGTGTAATCCCAGCTTCTCCAGGAATA...AACATTCTGTGGAGGGACAAACCACTGATTTGCCAGAAGCGAATATGGCTGCCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR TCA 90 bp | CGTGTGTTCAGGTCACTGGCAGACTTATTTTTGCTAGCAAACAACAGCTTGAAACTTGCTACACAAGCATaGGAACCTGAGTTCCTGTCC | + |
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Preference number: 2 (lower is better) Translates to: RVFRSLADLFLLANNSLKLATQA*EPEFLS Trigger: GGACAGGAACTCAGGTTCTCATGCTTGTGTAGCAAG...TTTCAAGCTGTTGTTTGCTAGCAAAAATAAGTCTGCCAGTGACCTGAACACACG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR TCA 90 bp | ATATCAGAATATCAGAAAACTTATCAACTGTCTAGTGGTGACAGCCATCGCCAGGAGGCAATGATTCGGTaGGTGAAGGGCTTGCTACAC | + |
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Preference number: 2 (lower is better) Translates to: ISEYQKTYQLSSGDSHRQEAMIR*VKGLLH Trigger: GTGTAGCAAGCCCTTCACTCACCGAATCATTGCCTC...CTGGCGATGGCTGTCACCACTAGACAGTTGATAAGTTTTCTGATATTCTGATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR TCA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAAGTCTCGCTTTCTAGATaGACCCTAAGTCCTACAGCA | + |
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Preference number: 2 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQVSLSR*TLSPTA Trigger: TGCTGTAGGACTTAGGGTTCATCTAGAAAGCGAGAC...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR CAA 90 bp | CAAGGAGCTTTTCATCGTGTGTTCAGGTCACTGGCAGACTTATTTTaGCTAGCAAACAACAGCTTGAAATGTCCTGTGTGTGCTCACTTG | + |
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Preference number: 2 (lower is better) Translates to: QGAFHRVFRSLADLF*LANNSLKCPVCAHL Trigger: CAAGTGAGCACACACAGGACATTTCAAGCTGTTGTTTGCTAGCAAAAATAAGTCTGCCAGTGACCTGAACACACGATGAAAAGCTCCTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR TCA 90 bp | CTAATATCAGAATATCAGAAAACTTATCAACTGTCTAGTGGTGACAGCCATCGCGTTTGCACTGCCACATaGAGCTCAGAGCAAGGAGCT | + |
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Preference number: 2 (lower is better) Translates to: LISEYQKTYQLSSGDSHRVCTAT*SSEQGA Trigger: AGCTCCTTGCTCTGAGCTTCATGTGGCAGTGCAAAC...GCGATGGCTGTCACCACTAGACAGTTGATAAGTTTTCTGATATTCTGATATTAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CCA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAATCCTGTCTCAACCTCTaGAGAACTAGGATTGTAGGT | + |
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Preference number: 2 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQSCLNL*RTRIVG Trigger: ACCTACAATCCTAGTTCTCCAGAGGTTGAGACAGGA...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGGGCTTCCTGTACGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACTTCCTCCTTTGTCTTTaGTTTTCTAGAGACAAAGTC | + |
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Preference number: 2 (lower is better) Translates to: CGLPVRRSKAGSVKHCAYFLLCL*FSRDKV Trigger: GACTTTGTCTCTAGAAAACCAAAGACAAAGGAGGAA...GTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCGTACAGGAAGCCCACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR TCA 90 bp | ATATCAGAATATCAGAAAACTTATCAACTGTCTAGTGGTGACAGCCATCGCCAGTCAAAGCGAAATTCCTaGGCCGAGCTCTGTCTGAAA | + |
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Preference number: 2 (lower is better) Translates to: ISEYQKTYQLSSGDSHRQSKRNS*AELCLK Trigger: TTTCAGACAGAGCTCGGCTCAGGAATTTCGCTTTGA...CTGGCGATGGCTGTCACCACTAGACAGTTGATAAGTTTTCTGATATTCTGATAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CCA 90 bp | CTGCATCCGTGGTACCTAATATCAGAATATCAGAAAACTTATCAACTGTCTAGTGGTAAAAATGCCGGCTaGGACAGACACCCCATTCCA | + |
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Preference number: 2 (lower is better) Translates to: LHPWYLISEYQKTYQLSSGKNAG*DRHPIP Trigger: TGGAATGGGGTGTCTGTCCCAGCCGGCATTTTTACC...ACTAGACAGTTGATAAGTTTTCTGATATTCTGATATTAGGTACCACGGATGCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CCA 90 bp | TGTGGGCTTCCTGTACGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACCATGAAAATGTTGTTTaGATAGGTAAACACAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: CGLPVRRSKAGSVKHCAYHENVV*IGKHRN Trigger: GTTCCTGTGTTTACCTATCCAAACAACATTTTCATG...GTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCGTACAGGAAGCCCACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CCA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAATATTCCTGGAGAAGCTaGGATTACACTGGATTTCAC | + |
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Preference number: 2 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQYSWRS*DYTGFH Trigger: GTGAAATCCAGTGTAATCCCAGCTTCTCCAGGAATA...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR TCA 90 bp | GGTCTGATGAAACTGAAGAGAGGATATTTATTCCTGGAGAAGCTGGGATTACACGAATATAAAAGCAACTaGGTAGCTTGGTCTACTGCA | + |
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Preference number: 2 (lower is better) Translates to: GLMKLKRGYLFLEKLGLHEYKSN*VAWSTA Trigger: TGCAGTAGACCAAGCTACTCAGTTGCTTTTATATTC...GTGTAATCCCAGCTTCTCCAGGAATAAATATCCTCTCTTCAGTTTCATCAGACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CCA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAATTCCTCCTTTGTCTTTaGTTTTCTAGAGACAAAGTC | + |
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Preference number: 2 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQFLLCL*FSRDKV Trigger: GACTTTGTCTCTAGAAAACCAAAGACAAAGGAGGAA...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CCA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAATTTCAAAAAGTAAGATaGGAAGTAACTGAGGAAGAC | + |
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Preference number: 2 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQFQKVR*EVTEED Trigger: GTCTTCCTCAGTTACTTCCCATCTTACTTTTTGAAA...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CCA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAACATGAAAATGTTGTTTaGATAGGTAAACACAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQHENVV*IGKHRN Trigger: GTTCCTGTGTTTACCTATCCAAACAACATTTTCATG...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR GCA 90 bp | ATATCAGAATATCAGAAAACTTATCAACTGTCTAGTGGTGACAGCCATCGCCAGTATGCACAGCACATATaGACCGAAAACAACTGTAAA | + |
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Preference number: 2 (lower is better) Translates to: ISEYQKTYQLSSGDSHRQYAQHI*TENNCK Trigger: TTTACAGTTGTTTTCGGTGCATATGTGCTGTGCATA...CTGGCGATGGCTGTCACCACTAGACAGTTGATAAGTTTTCTGATATTCTGATAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CCA 90 bp | ATATCAGAATATCAGAAAACTTATCAACTGTCTAGTGGTGACAGCCATCGCCAGTTTCAAAAAGTAAGATaGGAAGTAACTGAGGAAGAC | + |
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Preference number: 2 (lower is better) Translates to: ISEYQKTYQLSSGDSHRQFQKVR*EVTEED Trigger: GTCTTCCTCAGTTACTTCCCATCTTACTTTTTGAAA...CTGGCGATGGCTGTCACCACTAGACAGTTGATAAGTTTTCTGATATTCTGATAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR TCA 72 bp | GCAGATCCTGGAGGCTCATGGGCCAACCAGTGTAACTaGAATAGCAGGCTCCCTGTTCAGCAAGAGACCCTG | + |
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Preference number: 3 (lower is better) Translates to: ADPGGSWANQCN*NSRLPVQQETL Trigger: CAGGGTCTCTTGCTGAACAGGGAGCCTGCTATTTCAGTTACACTGGTTGGCCCATGAGCCTCCAGGATCTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CAA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAACCCCATTCCACCGCATaGGTGAGGGGGAAGGTAGAG | + |
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Preference number: 3 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQPHSTA*VRGKVE Trigger: CTCTACCTTCCCCCTCACCAATGCGGTGGAATGGGG...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR CCA 72 bp | TCATGCAGGCACCGTCACGGCAGCCATATTCGCTTCTaGCAAATCAGTGGTTTGTCCCTCCACAGAATGTTT | + |
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Preference number: 3 (lower is better) Translates to: SCRHRHGSHIRF*QISGLSLHRMF Trigger: AAACATTCTGTGGAGGGACAAACCACTGATTTGCCAGAAGCGAATATGGCTGCCGTGACGGTGCCTGCATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR TCA 72 bp | TTGGTCTACTGCAGAAGGTTTGAGGCAATGATTCGGTaGGTGAAGGGCTTGCTACACAAGCATGAGAACCTG | + |
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Preference number: 3 (lower is better) Translates to: LVYCRRFEAMIR*VKGLLHKHENL Trigger: CAGGTTCTCATGCTTGTGTAGCAAGCCCTTCACTCACCGAATCATTGCCTCAAACCTTCTGCAGTAGACCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR GCA 72 bp | CTCAACCTCTGGAGAACTAGGATTGTAGGTTTGCACTaGCACATGAAGCTCAGAGCAAGGAGCTTTTCATCG | + |
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Preference number: 3 (lower is better) Translates to: LNLWRTRIVGLH*HMKLRARSFSS Trigger: CGATGAAAAGCTCCTTGCTCTGAGCTTCATGTGGCAGTGCAAACCTACAATCCTAGTTCTCCAGAGGTTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CAA 90 bp | CTGCATCCGTGGTACCTAATATCAGAATATCAGAAAACTTATCAACTGTCTAGTCCCCATTCCACCGCATaGGTGAGGGGGAAGGTAGAG | + |
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Preference number: 3 (lower is better) Translates to: LHPWYLISEYQKTYQLSSPHSTA*VRGKVE Trigger: CTCTACCTTCCCCCTCACCAATGCGGTGGAATGGGG...ACTAGACAGTTGATAAGTTTTCTGATATTCTGATATTAGGTACCACGGATGCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CAA 90 bp | GGTTTGCACTGCCACATGAAGCTCAGAGCAAGGAGCTTTTCATCGTGTGTTCAGCTGGCAGACTTATTTTaGCTAGCAAACAACAGCTTG | + |
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Preference number: 3 (lower is better) Translates to: GLHCHMKLRARSFSSCVQLADLF*LANNSL Trigger: CAAGCTGTTGTTTGCTAGCAAAAATAAGTCTGCCAG...CTGAACACACGATGAAAAGCTCCTTGCTCTGAGCTTCATGTGGCAGTGCAAACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR-3UTR CAA 90 bp | TGGAGAACTAGGATTGTAGGTTTGCACTGCCACATGAAGCTCAGAGCAAGGAGCCTGGCAGACTTATTTTaGCTAGCAAACAACAGCTTG | + |
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Preference number: 3 (lower is better) Translates to: WRTRIVGLHCHMKLRARSLADLF*LANNSL Trigger: CAAGCTGTTGTTTGCTAGCAAAAATAAGTCTGCCAG...GCTCCTTGCTCTGAGCTTCATGTGGCAGTGCAAACCTACAATCCTAGTTCTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR TCA 72 bp | GTGCTCACTTGTGTTGGGCAGGAATATAAAAGCAACTaGGTAGCTTGGTCTACTGCAGAAGGTTTGAGGCAA | + |
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Preference number: 3 (lower is better) Translates to: VLTCVGQEYKSN*VAWSTAEGLRQ Trigger: TTGCCTCAAACCTTCTGCAGTAGACCAAGCTACTCAGTTGCTTTTATATTCCTGCCCAACACAAGTGAGCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR TCA 72 bp | GATTCTCAAAGCGAAATTCCTGAGCCGAGCTCTGTCTaGAAACATCATTTGTGTGAAAGGGAATCGGACCAC | + |
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Preference number: 3 (lower is better) Translates to: DSQSEIPEPSSV*KHHLCERESDH Trigger: GTGGTCCGATTCCCTTTCACACAAATGATGTTTTCAGACAGAGCTCGGCTCAGGAATTTCGCTTTGAGAATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR TCA 72 bp | AGAGACCCTGTTTCAAAAAGTAAGATGGGAAGTAACTaGGGAAGACACCTTGATGTGAGCCATTACCTCCAC | + |
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Preference number: 3 (lower is better) Translates to: RDPVSKSKMGSN*GRHLDVSHYLH Trigger: GTGGAGGTAATGGCTCACATCAAGGTGTCTTCCTCAGTTACTTCCCATCTTACTTTTTGAAACAGGGTCTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR TCA 72 bp | CTTTGGTTTTCTAGAGACAAAGTCTCGCTTTCTAGATaGACCCTAAGTCCTACAGCAGCCTTCCTGTCTCAA | + |
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Preference number: 3 (lower is better) Translates to: LWFSRDKVSLSR*TLSPTAAFLSQ Trigger: TTGAGACAGGAAGGCTGCTGTAGGACTTAGGGTTCATCTAGAAAGCGAGACTTTGTCTCTAGAAAACCAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR GCA 72 bp | TTTGCTAGCAAACAACAGCTTGAAATGTCCTGTGTGTaGTCACTTGTGTTGGGCAGGAATATAAAAGCAACT | + |
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Preference number: 3 (lower is better) Translates to: FASKQQLEMSCV*SLVLGRNIKAT Trigger: AGTTGCTTTTATATTCCTGCCCAACACAAGTGAGCACACACAGGACATTTCAAGCTGTTGTTTGCTAGCAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| 3UTR CAA 72 bp | AAATGCCGGCTGGGACAGACACCCCATTCCACCGCATaGGTGAGGGGGAAGGTAGAGACAGGCAGATCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: KCRLGQTPHSTA*VRGKVETGRSW Trigger: CCAGGATCTGCCTGTCTCTACCTTCCCCCTCACCAATGCGGTGGAATGGGGTGTCTGTCCCAGCCGGCATTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | ACAGACACCCCATTCCACCGCATTGGTGAGGGGGAAGGTAGAGACAGGCAGATCGGCCTGAAGCAAAATTaGGAGACAACACGGGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: TDTPFHRIGEGEGRDRQIGLKQN*ETTREP Trigger: TGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCC...GATCTGCCTGTCTCTACCTTCCCCCTCACCAATGCGGTGGAATGGGGTGTCTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | CGGCTGGGACAGACACCCCATTCCACCGCATTGGTGAGGGGGAAGGTAGAGACATTCAGCATCGCACTCTaGGGGAGAAATTGCTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: RLGQTPHSTALVRGKVETFSIAL*GRNCFC Trigger: ACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAA...TGTCTCTACCTTCCCCCTCACCAATGCGGTGGAATGGGGTGTCTGTCCCAGCCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | ACAGACACCCCATTCCACCGCATTGGTGAGGGGGAAGGTAGAGACAGGCAGATCCGGTCACATTCATGTTaGCTTCAGGATCCACAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: TDTPFHRIGEGEGRDRQIRSHSC*LQDPQL Trigger: CAGCTGTGGATCCTGAAGTCAACATGAATGTGACCG...GATCTGCCTGTCTCTACCTTCCCCCTCACCAATGCGGTGGAATGGGGTGTCTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | GGTTTGCACTGCCACATGAAGCTCAGAGCAAGGAGCTTTTCATCGTGTGTTCAGGCAGGATCCCAATGGTaGAAACGAACACCAGGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: GLHCHMKLRARSFSSCVQAGSQW*KRTPGP Trigger: AGGGCCTGGTGTTCGTTTTCACCATTGGGATCCTGC...CTGAACACACGATGAAAAGCTCCTTGCTCTGAGCTTCATGTGGCAGTGCAAACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | TGGAGAACTAGGATTGTAGGTTTGCACTGCCACATGAAGCTCAGAGCAAGGAGCGCCAGCAAGCCGTGCTaGAGATACACAACTGGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: WRTRIVGLHCHMKLRARSASKPC*RYTTGL Trigger: CAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGC...GCTCCTTGCTCTGAGCTTCATGTGGCAGTGCAAACCTACAATCCTAGTTCTCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | TGTGGGCTTCCTGTACGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACGGCCTGAAGCAAAATTaGGAGACAACACGGGAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: CGLPVRRSKAGSVKHCAYGLKQN*ETTREP Trigger: TGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCC...GTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCGTACAGGAAGCCCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | AAGACAGCTAGCGTGCTTCTTATTAACCAGAGAGCAATGTACACCTTCGACGTCGCAGGATCCCAATGGTaGAAACGAACACCAGGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: KTASVLLINQRAMYTFDVAGSQW*KRTPGP Trigger: AGGGCCTGGTGTTCGTTTTCACCATTGGGATCCTGC...GACGTCGAAGGTGTACATTGCTCTCTGGTTAATAAGAAGCACGCTAGCTGTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR GCA 90 bp | CGGCAGCCATATTCGCTTCTGGCAAATCAGTGGTTTGTCCCTCCACAGAATGTTCCAGTTACTAGAATCTaGCAGCAAGCCGTGCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: RQPYSLLANQWFVPPQNVPVTRI*QQAVLK Trigger: CTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGG...AACATTCTGTGGAGGGACAAACCACTGATTTGCCAGAAGCGAATATGGCTGCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| 3UTR CAA 72 bp | CACGGCAGCCATATTCGCTTCTGGCAAATCAGTGGTTaGTCCCTCCACAGAATGTTTCTCCACAGAAAAGTG | + |
|
Preference number: 4 (lower is better) Translates to: HGSHIRFWQISG*SLHRMFLHRKV Trigger: CACTTTTCTGTGGAGAAACATTCTGTGGAGGGACAAACCACTGATTTGCCAGAAGCGAATATGGCTGCCGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | AGACACCTTGATGTGAGCCATTACCTCCACACAAGGGCCAGAACACAGCCCACACGGTATTTAAAAACCTaGCCCCAGTGTAACATGTTT | + |
|
Preference number: 4 (lower is better) Translates to: RHLDVSHYLHTRARTQPTRYLKT*PQCNMF Trigger: AAACATGTTACACTGGGGTCAGGTTTTTAAATACCG...TGTGGGCTGTGTTCTGGCCCTTGTGTGGAGGTAATGGCTCACATCAAGGTGTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | AGCGTGCTTCTTATTAACCAGAGAGCAATGTACACCTTCGACGTCATCATTTTCGTCCAAACATGTCCTTaGGAAGAGGGTCTGGCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: SVLLINQRAMYTFDVIIFVQTCP*EEGLAS Trigger: GCTTGCCAGACCCTCTTCTCAAGGACATGTTTGGAC...GAAAATGATGACGTCGAAGGTGTACATTGCTCTCTGGTTAATAAGAAGCACGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR GCA 90 bp | TGGAGAACTAGGATTGTAGGTTTGCACTGCCACATGAAGCTCAGAGCAAGGAGCACTGAAAGAGTCTTGTaGTTCAGAGACCAGGTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: WRTRIVGLHCHMKLRARSTERVL*FRDQVF Trigger: AAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGT...GCTCCTTGCTCTGAGCTTCATGTGGCAGTGCAAACCTACAATCCTAGTTCTCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR CCA 90 bp | TGTGGGCTTCCTGTACGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACCAGATAAAATCCAGATaGTCCCACTCAGGAATGTTC | + |
|
Preference number: 4 (lower is better) Translates to: CGLPVRRSKAGSVKHCAYQIKSR*SHSGMF Trigger: GAACATTCCTGAGTGGGACCATCTGGATTTTATCTG...GTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCGTACAGGAAGCCCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAAGCCCAGAACTCATCCTaGGAAACTGAAAGAGTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQAQNSS*ETERVL Trigger: CAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGC...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | ATATCAGAATATCAGAAAACTTATCAACTGTCTAGTGGTGACAGCCATCGCCAGGTCCAAACATGTCCTTaGGAAGAGGGTCTGGCAAGC | + |
|
Preference number: 4 (lower is better) Translates to: ISEYQKTYQLSSGDSHRQVQTCP*EEGLAS Trigger: GCTTGCCAGACCCTCTTCTCAAGGACATGTTTGGAC...CTGGCGATGGCTGTCACCACTAGACAGTTGATAAGTTTTCTGATATTCTGATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | TGGAGAACTAGGATTGTAGGTTTGCACTGCCACATGAAGCTCAGAGCAAGGAGCCGGTATTTAAAAACCTaGCCCCAGTGTAACATGTTT | + |
|
Preference number: 4 (lower is better) Translates to: WRTRIVGLHCHMKLRARSRYLKT*PQCNMF Trigger: AAACATGTTACACTGGGGTCAGGTTTTTAAATACCG...GCTCCTTGCTCTGAGCTTCATGTGGCAGTGCAAACCTACAATCCTAGTTCTCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR GCA 90 bp | AGCGTGCTTCTTATTAACCAGAGAGCAATGTACACCTTCGACGTCATCATTTTCCCAGTTACTAGAATCTaGCAGCAAGCCGTGCTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: SVLLINQRAMYTFDVIIFPVTRI*QQAVLK Trigger: CTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGG...GAAAATGATGACGTCGAAGGTGTACATTGCTCTCTGGTTAATAAGAAGCACGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR CCA 90 bp | CGTGTGTTCAGGTCACTGGCAGACTTATTTTTGCTAGCAAACAACAGCTTGAAACTTGAGAAGAGGGTCTaGCAAGCGTCCCAATTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: RVFRSLADLFLLANNSLKLEKRV*QASQLK Trigger: CTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG...TTTCAAGCTGTTGTTTGCTAGCAAAAATAAGTCTGCCAGTGACCTGAACACACG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR CCA 90 bp | GGTCTGATGAAACTGAAGAGAGGATATTTATTCCTGGAGAAGCTGGGATTACACCTTGAGAAGAGGGTCTaGCAAGCGTCCCAATTGAAG | + |
|
Preference number: 4 (lower is better) Translates to: GLMKLKRGYLFLEKLGLHLEKRV*QASQLK Trigger: CTTCAATTGGGACGCTTGCCAGACCCTCTTCTCAAG...GTGTAATCCCAGCTTCTCCAGGAATAAATATCCTCTCTTCAGTTTCATCAGACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | ATATCAGAATATCAGAAAACTTATCAACTGTCTAGTGGTGACAGCCATCGCCAGCGGTCACATTCATGTTaGCTTCAGGATCCACAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: ISEYQKTYQLSSGDSHRQRSHSC*LQDPQL Trigger: CAGCTGTGGATCCTGAAGTCAACATGAATGTGACCG...CTGGCGATGGCTGTCACCACTAGACAGTTGATAAGTTTTCTGATATTCTGATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | TCTCCACAGAAAAGTGACCAGACTACACATTCGGAACCAACAGAGCTCATTGTACTCATCCTGAGAAACTaGAAGAGTCTTGTGCTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: SPQKSDQTTHSEPTELIVLILRN*KSLVLQ Trigger: CTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAG...TACAATGAGCTCTGTTGGTTCCGAATGTGTAGTCTGGTCACTTTTCTGTGGAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAACTCATCCTGAGAAACTaGAAGAGTCTTGTGCTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQLILRN*KSLVLQ Trigger: CTGAAGCACAAGACTCTTTCAGTTTCTCAGGATGAG...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | CGTGTGTTCAGGTCACTGGCAGACTTATTTTTGCTAGCAAACAACAGCTTGAAAGCCCAGAACTCATCCTaGGAAACTGAAAGAGTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: RVFRSLADLFLLANNSLKAQNSS*ETERVL Trigger: CAAGACTCTTTCAGTTTCTCAGGATGAGTTCTGGGC...TTTCAAGCTGTTGTTTGCTAGCAAAAATAAGTCTGCCAGTGACCTGAACACACG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | AGCGTGCTTCTTATTAACCAGAGAGCAATGTACACCTTCGACGTCATCATTTTCTTCAGCATCGCACTCTaGGGGAGAAATTGCTTCTGT | + |
|
Preference number: 4 (lower is better) Translates to: SVLLINQRAMYTFDVIIFFSIAL*GRNCFC Trigger: ACAGAAGCAATTTCTCCCTCAGAGTGCGATGCTGAA...GAAAATGATGACGTCGAAGGTGTACATTGCTCTCTGGTTAATAAGAAGCACGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | TCTCCACAGAAAAGTGACCAGACTACACATTCGGAACCAACAGAGCTCATTGTAACCAACTTGGGGATTTaGGTCAGTAAGATAGTGATG | + |
|
Preference number: 4 (lower is better) Translates to: SPQKSDQTTHSEPTELIVTNLGI*VSKIVM Trigger: CATCACTATCTTACTGACTCAAATCCCCAAGTTGGT...TACAATGAGCTCTGTTGGTTCCGAATGTGTAGTCTGGTCACTTTTCTGTGGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR GCA 90 bp | TCTCCACAGAAAAGTGACCAGACTACACATTCGGAACCAACAGAGCTCATTGTAACTGAAAGAGTCTTGTaGTTCAGAGACCAGGTGTTT | + |
|
Preference number: 4 (lower is better) Translates to: SPQKSDQTTHSEPTELIVTERVL*FRDQVF Trigger: AAACACCTGGTCTCTGAAGCACAAGACTCTTTCAGT...TACAATGAGCTCTGTTGGTTCCGAATGTGTAGTCTGGTCACTTTTCTGTGGAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR GCA 90 bp | AGCGTGCTTCTTATTAACCAGAGAGCAATGTACACCTTCGACGTCATCATTTTCCAGGAAGAAGACGTTTaGGCAAAGCTCCTTCATGAT | + |
|
Preference number: 4 (lower is better) Translates to: SVLLINQRAMYTFDVIIFQEEDV*AKLLHD Trigger: ATCATGAAGGAGCTTTGCGCAAACGTCTTCTTCCTG...GAAAATGATGACGTCGAAGGTGTACATTGCTCTCTGGTTAATAAGAAGCACGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | GGTCTGATGAAACTGAAGAGAGGATATTTATTCCTGGAGAAGCTGGGATTACACACCAACTTGGGGATTTaGGTCAGTAAGATAGTGATG | + |
|
Preference number: 4 (lower is better) Translates to: GLMKLKRGYLFLEKLGLHTNLGI*VSKIVM Trigger: CATCACTATCTTACTGACTCAAATCCCCAAGTTGGT...GTGTAATCCCAGCTTCTCCAGGAATAAATATCCTCTCTTCAGTTTCATCAGACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| 3UTR CAA 72 bp | TTTCATCGTGTGTTCAGGTCACTGGCAGACTTATTTTaGCTAGCAAACAACAGCTTGAAATGTCCTGTGTGT | + |
|
Preference number: 4 (lower is better) Translates to: FHRVFRSLADLF*LANNSLKCPVC Trigger: ACACACAGGACATTTCAAGCTGTTGTTTGCTAGCAAAAATAAGTCTGCCAGTGACCTGAACACACGATGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | AGCGTGCTTCTTATTAACCAGAGAGCAATGTACACCTTCGACGTCATCATTTTCCAACTCAGGCATCTGTaGAAAAGCTATGAAACCTAT | + |
|
Preference number: 4 (lower is better) Translates to: SVLLINQRAMYTFDVIIFQLRHL*KSYETY Trigger: ATAGGTTTCATAGCTTTTTCACAGATGCCTGAGTTG...GAAAATGATGACGTCGAAGGTGTACATTGCTCTCTGGTTAATAAGAAGCACGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAATTAAATTCTTCTCATTaGAGCCACATAGCAGGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQLNSSH*SHIAGR Trigger: TCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAA...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR CCA 90 bp | GGTCTGATGAAACTGAAGAGAGGATATTTATTCCTGGAGAAGCTGGGATTACACTGTGATACACCAACTTaGGGATTTGAGTCAGTAAGA | + |
|
Preference number: 4 (lower is better) Translates to: GLMKLKRGYLFLEKLGLHCDTPT*GFESVR Trigger: TCTTACTGACTCAAATCCCCAAGTTGGTGTATCACA...GTGTAATCCCAGCTTCTCCAGGAATAAATATCCTCTCTTCAGTTTCATCAGACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | CGTGTGTTCAGGTCACTGGCAGACTTATTTTTGCTAGCAAACAACAGCTTGAAATTAAATTCTTCTCATTaGAGCCACATAGCAGGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: RVFRSLADLFLLANNSLKLNSSH*SHIAGR Trigger: TCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAA...TTTCAAGCTGTTGTTTGCTAGCAAAAATAAGTCTGCCAGTGACCTGAACACACG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR CCA 90 bp | ATATCAGAATATCAGAAAACTTATCAACTGTCTAGTGGTGACAGCCATCGCCAGTGTGATACACCAACTTaGGGATTTGAGTCAGTAAGA | + |
|
Preference number: 4 (lower is better) Translates to: ISEYQKTYQLSSGDSHRQCDTPT*GFESVR Trigger: TCTTACTGACTCAAATCCCCAAGTTGGTGTATCACA...CTGGCGATGGCTGTCACCACTAGACAGTTGATAAGTTTTCTGATATTCTGATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR TCA 90 bp | CTGCATCCGTGGTACCTAATATCAGAATATCAGAAAACTTATCAACTGTCTAGTCAACTCAGGCATCTGTaGAAAAGCTATGAAACCTAT | + |
|
Preference number: 4 (lower is better) Translates to: LHPWYLISEYQKTYQLSSQLRHL*KSYETY Trigger: ATAGGTTTCATAGCTTTTTCACAGATGCCTGAGTTG...ACTAGACAGTTGATAAGTTTTCTGATATTCTGATATTAGGTACCACGGATGCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS TCA 90 bp | CATGATTATCTCGGTCACATTCATGTTGACTTCAGGATCCACAGCTaGTACAGTTCCCGTGGGCACCCGAGAAAGCAGGATCCCAATGGT | + |
|
Preference number: 5 (lower is better) Translates to: HDYLGHIHVDFRIHS*YSSRGHPRKQDPNG Trigger: ACCATTGGGATCCTGCTTTCTCGGGTGCCCACGGGAACTGTATCAGCTGTGGATCCTGAAGTCAACATGAATGTGACCGAGATAATCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS GCA 90 bp | GCCCAAGCTGCTGTTGTCAATGTTTGTGACCCAGTTACTAGAATCTaGCAGCAAGCCGTGCTGAAGATACACAACTGGTCTGGGACCTTT | + |
|
Preference number: 5 (lower is better) Translates to: AQAAVVNVCDPVTRI*QQAVLKIHNWSGTF Trigger: AAAGGTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR CAA 90 bp | TGGAGAACTAGGATTGTAGGTTTGCACTGCCACATGAAGCTCAGAGCAAGGAGCTCGGTCACATTCATGTaGACTTCAGGATCCACAGCT | + |
|
Preference number: 5 (lower is better) Translates to: WRTRIVGLHCHMKLRARSSVTFM*TSGSTA Trigger: AGCTGTGGATCCTGAAGTCAACATGAATGTGACCGA...GCTCCTTGCTCTGAGCTTCATGTGGCAGTGCAAACCTACAATCCTAGTTCTCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR CAA 90 bp | TGGAGAACTAGGATTGTAGGTTTGCACTGCCACATGAAGCTCAGAGCAAGGAGCACTCTGAGGGAGAAATaGCTTCTGTCCAAACATGTC | + |
|
Preference number: 5 (lower is better) Translates to: WRTRIVGLHCHMKLRARSTLREK*LLSKHV Trigger: GACATGTTTGGACAGAAGCAATTTCTCCCTCAGAGT...GCTCCTTGCTCTGAGCTTCATGTGGCAGTGCAAACCTACAATCCTAGTTCTCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS TCA 90 bp | TCAATGTTTGTGACCCAGTTACTAGAATCTGCCAGCAAGCCGTGCTaGAGATACACAACTGGTCTGGGACCTTTGCCAAAATGGTTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: SMFVTQLLESASKPC*RYTTGLGPLPKWFF Trigger: GAAGAACCATTTTGGCAAAGGTCCCAGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR CAA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAAAAGCCCAAGCTGCTGTaGTCAATGTTTGTGACCCAG | + |
|
Preference number: 5 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQKPKLL*SMFVTQ Trigger: CTGGGTCACAAACATTGACAACAGCAGCTTGGGCTT...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR CAA 90 bp | TCTCCACAGAAAAGTGACCAGACTACACATTCGGAACCAACAGAGCTCATTGTAAAGCCCAAGCTGCTGTaGTCAATGTTTGTGACCCAG | + |
|
Preference number: 5 (lower is better) Translates to: SPQKSDQTTHSEPTELIVKPKLL*SMFVTQ Trigger: CTGGGTCACAAACATTGACAACAGCAGCTTGGGCTT...TACAATGAGCTCTGTTGGTTCCGAATGTGTAGTCTGGTCACTTTTCTGTGGAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
||
| CDS-3UTR CAA 90 bp | TCTCCACAGAAAAGTGACCAGACTACACATTCGGAACCAACAGAGCTCATTGTATCGGTCACATTCATGTaGACTTCAGGATCCACAGCT | + |
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Preference number: 5 (lower is better) Translates to: SPQKSDQTTHSEPTELIVSVTFM*TSGSTA Trigger: AGCTGTGGATCCTGAAGTCAACATGAATGTGACCGA...TACAATGAGCTCTGTTGGTTCCGAATGTGTAGTCTGGTCACTTTTCTGTGGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| CDS-3UTR CAA 90 bp | TGTGGGCTTCCTGTACGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACTCCCCAGTCAAAAGCTaGAAGCTTACGGTATTTAAA | + |
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Preference number: 5 (lower is better) Translates to: CGLPVRRSKAGSVKHCAYSPVKS*KLTVFK Trigger: TTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGA...GTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCGTACAGGAAGCCCACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| CDS-3UTR CAA 90 bp | AAGACAGCTAGCGTGCTTCTTATTAACCAGAGAGCAATGTACACCTTCGACGTCTTTAAATTCTTCTCATaGAAGCCACATAGCAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: KTASVLLINQRAMYTFDVFKFFS*KPHSRK Trigger: CTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAA...GACGTCGAAGGTGTACATTGCTCTCTGGTTAATAAGAAGCACGCTAGCTGTCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| CDS-3UTR CAA 90 bp | TCTCCACAGAAAAGTGACCAGACTACACATTCGGAACCAACAGAGCTCATTGTATCCCCAGTCAAAAGCTaGAAGCTTACGGTATTTAAA | + |
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Preference number: 5 (lower is better) Translates to: SPQKSDQTTHSEPTELIVSPVKS*KLTVFK Trigger: TTTAAATACCGTAAGCTTCAAGCTTTTGACTGGGGA...TACAATGAGCTCTGTTGGTTCCGAATGTGTAGTCTGGTCACTTTTCTGTGGAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| CDS-3UTR CAA 90 bp | CGCAGGAGCAAAGCAGGCTCAGTAAAACATTGTGCATACAACACTGATTCTCAATTTAAATTCTTCTCATaGAAGCCACATAGCAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: RRSKAGSVKHCAYNTDSQFKFFS*KPHSRK Trigger: CTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAA...TTGAGAATCAGTGTTGTATGCACAATGTTTTACTGAGCCTGCTTTGCTCCTGCG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| CDS CAA 90 bp | CACACATCAAAGCCAGCATCCGCCAGGAGGAAGCCCAAGCTGCTGTaGTCAATGTTTGTGACCCAGTTACTAGAATCTGCCAGCAAGCCG | + |
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Preference number: 6 (lower is better) Translates to: HTSKPASARRKPKLL*SMFVTQLLESASKP Trigger: CGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTTTGATGTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| CDS CAA 72 bp | AAGCCAGCATCCGCCAGGAGGAAGCCCAAGCTGCTGTaGTCAATGTTTGTGACCCAGTTACTAGAATCTGCC | + |
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Preference number: 6 (lower is better) Translates to: KPASARRKPKLL*SMFVTQLLESA Trigger: GGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGCAGCTTGGGCTTCCTCCTGGCGGATGCTGGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| CDS CAA 90 bp | TCACCAGGATATCCCCAGCGCATGATTATCTCGGTCACATTCATGTaGACTTCAGGATCCACAGCTGATACAGTTCCCGTGGGCACCCGA | + |
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Preference number: 6 (lower is better) Translates to: SPGYPQRMIISVTFM*TSGSTADTVPVGTR Trigger: TCGGGTGCCCACGGGAACTGTATCAGCTGTGGATCCTGAAGTCAACATGAATGTGACCGAGATAATCATGCGCTGGGGATATCCTGGTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| CDS CAA 72 bp | TATCCCCAGCGCATGATTATCTCGGTCACATTCATGTaGACTTCAGGATCCACAGCTGATACAGTTCCCGTG | + |
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Preference number: 6 (lower is better) Translates to: YPQRMIISVTFM*TSGSTADTVPV Trigger: CACGGGAACTGTATCAGCTGTGGATCCTGAAGTCAACATGAATGTGACCGAGATAATCATGCGCTGGGGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| CDS GCA 72 bp | GCTGTTGTCAATGTTTGTGACCCAGTTACTAGAATCTaGCAGCAAGCCGTGCTGAAGATACACAACTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: AVVNVCDPVTRI*QQAVLKIHNWS Trigger: AGACCAGTTGTGTATCTTCAGCACGGCTTGCTGGCAGATTCTAGTAACTGGGTCACAAACATTGACAACAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| CDS TCA 72 bp | AGCGTCCCAATTGAAGTAGCGGGCCTGAAGCAAAATTaGGAGACAACACGGGAGCCAAGACTAAAAACATTT | + |
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Preference number: 6 (lower is better) Translates to: SVPIEVAGLKQN*ETTREPRLKTF Trigger: AAATGTTTTTAGTCTTGGCTCCCGTGTTGTCTCTCAATTTTGCTTCAGGCCCGCTACTTCAATTGGGACGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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| CDS CAA 72 bp | TACACATCCACTCTAGACATATTTAAATTCTTCTCATaGAAGCCACATAGCAGGAAGAAGACGTTTGCGCAA | + |
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Preference number: 6 (lower is better) Translates to: YTSTLDIFKFFS*KPHSRKKTFAQ Trigger: TTGCGCAAACGTCTTCTTCCTGCTATGTGGCTTCAATGAGAAGAATTTAAATATGTCTAGAGTGGATGTGTA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000049572.15 ENSMUST00000178114.2 |
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