Pregenerated sensors for LIN7C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027162Ensembl transcript IDs: ENSMUST00000028583.8
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAACAGAGTCCAGCATAACCAGAAAGTCCATGAGCTGGTACCCCTaGAGCCTGGGTGTGCAGACGAGCCTCTACAGACAATGGATAAAC | + |
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Preference number: 1 (lower is better) Translates to: QTESSITRKSMSWYP*SLGVQTSLYRQWIN Trigger: GTTTATCCATTGTCTGTAGAGGCTCGTCTGCACACCCAGGCTTCAGGGGTACCAGCTCATGGACTTTCTGGTTATGCTGGACTCTGTTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR GCA 90 bp | AGCTACACTAAGACAAGGGTTCCTCAGGGTTTCCTAACCCTGGGATaGAGAAATACGAGCATAACAATAACGGTACTGTTCTATATGCAC | + |
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Preference number: 1 (lower is better) Translates to: SYTKTRVPQGFLTLG*RNTSITITVLFYMH Trigger: GTGCATATAGAACAGTACCGTTATTGTTATGCTCGTATTTCTGCATCCCAGGGTTAGGAAACCCTGAGGAACCCTTGTCTTAGTGTAGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR GCA 90 bp | AGTACAAAAGGCAGCAGAGACGCCAATACTCATAACGTGATGAACTaGCACGAGCGAGACTGCGATGTTTCATTTCTTGGAAAAATGAAA | + |
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Preference number: 1 (lower is better) Translates to: STKGSRDANTHNVMN*HERDCDVSFLGKMK Trigger: TTTCATTTTTCCAAGAAATGAAACATCGCAGTCTCGCTCGTGGCAGTTCATCACGTTATGAGTATTGGCGTCTCTGCTGCCTTTTGTACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR GCA 90 bp | TCTGAAAACTGCAGTAATCTTGTAAGACTCACAATGCTCACACCATaGAGAAAAACATACACACTTCCATTCTTCCTGAAGGAATGTTAC | + |
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Preference number: 1 (lower is better) Translates to: SENCSNLVRLTMLTP*RKTYTLPFFLKECY Trigger: GTAACATTCCTTCAGGAAGAATGGAAGTGTGTATGTTTTTCTGCATGGTGTGAGCATTGTGAGTCTTACAAGATTACTGCAGTTTTCAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR GCA 90 bp | CAAGCCAGACTCACCCTCACAGTGCGCTCACATCGGCAACACTTAAACATGCTCCATCCCTCCTGCCCTTaGCACCTCCAGCCGGTGCTG | + |
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Preference number: 2 (lower is better) Translates to: QARLTLTVRSHRQHLNMLHPSCP*HLQPVL Trigger: CAGCACCGGCTGGAGGTGGCAAGGGCAGGAGGGATG...GAGCATGTTTAAGTGTTGCCGATGTGAGCGCACTGTGAGGGTGAGTCTGGCTTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR CCA 90 bp | CAAGCCAGACTCACCCTCACAGTGCGCTCACATCGGCAACACTTAAACATGCTCGTAAGAATGCATGCATaGCTCTTCAGGCTCCAGAGT | + |
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Preference number: 2 (lower is better) Translates to: QARLTLTVRSHRQHLNMLVRMHA*LFRLQS Trigger: ACTCTGGAGCCTGAAGAGCCATGCATGCATTCTTAC...GAGCATGTTTAAGTGTTGCCGATGTGAGCGCACTGTGAGGGTGAGTCTGGCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR CCA 90 bp | GAGCCCCATCTAACAAGCCAGACTCACCCTCACAGTGCGCTCACATCGGCAACACAAGCACATTTGCAGTaGACTAAAGACATTCAACCA | + |
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Preference number: 2 (lower is better) Translates to: EPHLTSQTHPHSALTSATQAHLQ*TKDIQP Trigger: TGGTTGAATGTCTTTAGTCCACTGCAAATGTGCTTG...TGTTGCCGATGTGAGCGCACTGTGAGGGTGAGTCTGGCTTGTTAGATGGGGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR GCA 90 bp | CAAGCCAGACTCACCCTCACAGTGCGCTCACATCGGCAACACTTAAACATGCTCAATGTCAAGCACATTTaGAGTGGACTAAAGACATTC | + |
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Preference number: 2 (lower is better) Translates to: QARLTLTVRSHRQHLNMLNVKHI*SGLKTF Trigger: GAATGTCTTTAGTCCACTGCAAATGTGCTTGACATT...GAGCATGTTTAAGTGTTGCCGATGTGAGCGCACTGTGAGGGTGAGTCTGGCTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR CCA 90 bp | GCAAACAAAATACAGACATCTGAAGTTTCATGTCAGGAACCACCACGGATTTTGGCACGGGAAGGGACCTaGGTGAGTTGTACATCTGCA | + |
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Preference number: 2 (lower is better) Translates to: ANKIQTSEVSCQEPPRILAREGT*VSCTSA Trigger: TGCAGATGTACAACTCACCCAGGTCCCTTCCCGTGC...CAAAATCCGTGGTGGTTCCTGACATGAAACTTCAGATGTCTGTATTTTGTTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR GCA 90 bp | GGTACAATTACGAGAGTCCTTATCAGTATCATTCCACAGTATAATCACATGTACGACCTCTGGAGCAACTaGAGCCACAGTAGCTACACT | + |
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Preference number: 2 (lower is better) Translates to: GTITRVLISIIPQYNHMYDLWSN*SHSSYT Trigger: AGTGTAGCTACTGTGGCTGCAGTTGCTCCAGAGGTC...GTACATGTGATTATACTGTGGAATGATACTGATAAGGACTCTCGTAATTGTACC 43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR TCA 90 bp | AAGTTTCATGTCAGGAACCACCACGGATTTTGGTTTTTACTCTATGTAAAGGTTCATTCTCCCCAGCACTaGCTCATCTCTAGGCATGAA | + |
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Preference number: 2 (lower is better) Translates to: KFHVRNHHGFWFLLYVKVHSPQH*LISRHE Trigger: TTCATGCCTAGAGATGAGTCAGTGCTGGGGAGAATG...AACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR TCA 90 bp | AAGTTTCATGTCAGGAACCACCACGGATTTTGGTTTTTACTCTATGTAAAGGTTCTTTTAGGAAACCGGTaGCATCCAGTGGACAAATGG | + |
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Preference number: 2 (lower is better) Translates to: KFHVRNHHGFWFLLYVKVLLGNR*HPVDKW Trigger: CCATTTGTCCACTGGATGTCACCGGTTTCCTAAAAG...AACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR TCA 90 bp | GCAAACAAAATACAGACATCTGAAGTTTCATGTCAGGAACCACCACGGATTTTGCTGTACACTTGTCACTaGCTTTCCTATGGTCAGTAT | + |
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Preference number: 2 (lower is better) Translates to: ANKIQTSEVSCQEPPRILLYTCH*LSYGQY Trigger: ATACTGACCATAGGAAAGTCAGTGACAAGTGTACAG...CAAAATCCGTGGTGGTTCCTGACATGAAACTTCAGATGTCTGTATTTTGTTTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR CCA 90 bp | AAGTTTCATGTCAGGAACCACCACGGATTTTGGTTTTTACTCTATGTAAAGGTTGGTCACCGAAGTTTCTaGTGTTTTACAATCACTGGC | + |
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Preference number: 2 (lower is better) Translates to: KFHVRNHHGFWFLLYVKVGHRSF*CFTITG Trigger: GCCAGTGATTGTAAAACACCAGAAACTTCGGTGACC...AACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR TCA 90 bp | AAGTTTCATGTCAGGAACCACCACGGATTTTGGTTTTTACTCTATGTAAAGGTTTGTCCTCACCAACTCTaGCTTTTTCTCGTGAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: KFHVRNHHGFWFLLYVKVCPHQL*LFLVRK Trigger: TTTTCTCACGAGAAAAAGTCAGAGTTGGTGAGGACA...AACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR GCA 90 bp | GGTACAATTACGAGAGTCCTTATCAGTATCATTCCACAGTATAATCACATGTACAGAGTTATAAATAGGTaGCGGCCCACACAAAGAACA | + |
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Preference number: 2 (lower is better) Translates to: GTITRVLISIIPQYNHMYRVINR*RPTQRT Trigger: TGTTCTTTGTGTGGGCCGGCACCTATTTATAACTCT...GTACATGTGATTATACTGTGGAATGATACTGATAAGGACTCTCGTAATTGTACC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR TCA 90 bp | AAGTTTCATGTCAGGAACCACCACGGATTTTGGTTTTTACTCTATGTAAAGGTTAAATTCTGCAACAGCTaGAACATAAAACCAGGAAGC | + |
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Preference number: 2 (lower is better) Translates to: KFHVRNHHGFWFLLYVKVKFCNS*NIKPGS Trigger: GCTTCCTGGTTTTATGTTTCAGCTGTTGCAGAATTT...AACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR CCA 90 bp | AAGTTTCATGTCAGGAACCACCACGGATTTTGGTTTTTACTCTATGTAAAGGTTCAGGCATTTATAAAATaGCAAGAAGAGGTCACCGAA | + |
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Preference number: 2 (lower is better) Translates to: KFHVRNHHGFWFLLYVKVQAFIK*QEEVTE Trigger: TTCGGTGACCTCTTCTTGCCATTTTATAAATGCCTG...AACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR TCA 90 bp | ATTATAGATATGTTATGTTCCAAGTACAAAAGGCAGCAGAGACGCCAATACTCATCTGACTTTTTCTCGTaGGAAAAACAGTGTATGCTT | + |
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Preference number: 2 (lower is better) Translates to: IIDMLCSKYKRQQRRQYSSDFFS*EKQCML Trigger: AAGCATACACTGTTTTTCTCACGAGAAAAAGTCAGA...TGAGTATTGGCGTCTCTGCTGCCTTTTGTACTTGGAACATAACATATCTATAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR TCA 90 bp | GGTACAATTACGAGAGTCCTTATCAGTATCATTCCACAGTATAATCACATGTACCAGTATTTAAAATTCTaGGATAGGAGAATCGCATCG | + |
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Preference number: 2 (lower is better) Translates to: GTITRVLISIIPQYNHMYQYLKF*DRRIAS Trigger: CGATGCGATTCTCCTATCTCAGAATTTTAAATACTG...GTACATGTGATTATACTGTGGAATGATACTGATAAGGACTCTCGTAATTGTACC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR GCA 90 bp | AAGTTTCATGTCAGGAACCACCACGGATTTTGGTTTTTACTCTATGTAAAGGTTATCCTCCAGCCTCACTaGTTAAATATTATGAAAAAC | + |
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Preference number: 2 (lower is better) Translates to: KFHVRNHHGFWFLLYVKVILQPH*LNIMKN Trigger: GTTTTTCATAATATTTAAGCAGTGAGGCTGGAGGAT...AACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR CCA 90 bp | AAGTTTCATGTCAGGAACCACCACGGATTTTGGTTTTTACTCTATGTAAAGGTTACAAAGAACAGACTGTaGGTTACTGAAGAAAAAGAA | + |
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Preference number: 2 (lower is better) Translates to: KFHVRNHHGFWFLLYVKVTKNRL*VTEEKE Trigger: TTCTTTTTCTTCAGTAACCCACAGTCTGTTCTTTGT...AACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR TCA 72 bp | TCCAGCATAACCAGAAAGTCCATGAGCTGGTACCCCTaGAGCCTGGGTGTGCAGACGAGCCTCTACAGACAA | + |
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Preference number: 3 (lower is better) Translates to: SSITRKSMSWYP*SLGVQTSLYRQ Trigger: TTGTCTGTAGAGGCTCGTCTGCACACCCAGGCTTCAGGGGTACCAGCTCATGGACTTTCTGGTTATGCTGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR CAA 90 bp | GAGCCCCATCTAACAAGCCAGACTCACCCTCACAGTGCGCTCACATCGGCAACATTAGAAGTCACCACCTaGTCTTACTTCCATTCTCCC | + |
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Preference number: 3 (lower is better) Translates to: EPHLTSQTHPHSALTSATLEVTT*SYFHSP Trigger: GGGAGAATGGAAGTAAGACAAGGTGGTGACTTCTAA...TGTTGCCGATGTGAGCGCACTGTGAGGGTGAGTCTGGCTTGTTAGATGGGGCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR CAA 90 bp | GGTACAATTACGAGAGTCCTTATCAGTATCATTCCACAGTATAATCACATGTACACATCCCTCCTGCCCTaGCCACCTCCAGCCGGTGCT | + |
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Preference number: 3 (lower is better) Translates to: GTITRVLISIIPQYNHMYTSLLP*PPPAGA Trigger: AGCACCGGCTGGAGGTGGCAAGGGCAGGAGGGATGT...GTACATGTGATTATACTGTGGAATGATACTGATAAGGACTCTCGTAATTGTACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR GCA 72 bp | AAGACAAGGGTTCCTCAGGGTTTCCTAACCCTGGGATaGAGAAATACGAGCATAACAATAACGGTACTGTTC | + |
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Preference number: 3 (lower is better) Translates to: KTRVPQGFLTLG*RNTSITITVLF Trigger: GAACAGTACCGTTATTGTTATGCTCGTATTTCTGCATCCCAGGGTTAGGAAACCCTGAGGAACCCTTGTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR CCA 72 bp | ATTTATAAAATGGCAAGAAGAGGTCACCGAAGTTTCTaGTGTTTTACAATCACTGGCGTGGAGGCCATCAGT | + |
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Preference number: 3 (lower is better) Translates to: IYKMARRGHRSF*CFTITGVEAIS Trigger: ACTGATGGCCTCCACGCCAGTGATTGTAAAACACCAGAAACTTCGGTGACCTCTTCTTGCCATTTTATAAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR TCA 72 bp | GACAGAACTGTCCTCACCAACTCTGACTTTTTCTCGTaGGAAAAACAGTGTATGCTTCTCTATAACCATAAG | + |
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Preference number: 3 (lower is better) Translates to: DRTVLTNSDFFS*EKQCMLLYNHK Trigger: CTTATGGTTATAGAGAAGCATACACTGTTTTTCTCACGAGAAAAAGTCAGAGTTGGTGAGGACAGTTCTGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR-3UTR CAA 90 bp | AAGTTTCATGTCAGGAACCACCACGGATTTTGGTTTTTACTCTATGTAAAGGTTGATGAAAGCAAAGTATaGCTACTCATGCGCAACAGT | + |
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Preference number: 3 (lower is better) Translates to: KFHVRNHHGFWFLLYVKVDESKV*LLMRNS Trigger: ACTGTTGCGCATGAGTAGCAATACTTTGCTTTCATC...AACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR TCA 72 bp | ACACATGAGCTAATTCTGAAAATATACAGTTCAGCATaGTCTTATCAATGTCAAGCACATTTGCAGTGGACT | + |
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Preference number: 3 (lower is better) Translates to: THELILKIYSSA*SYQCQAHLQWT Trigger: AGTCCACTGCAAATGTGCTTGACATTGATAAGATCATGCTGAACTGTATATTTTCAGAATTAGCTCATGTGT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR TCA 90 bp | GAGCCCCATCTAACAAGCCAGACTCACCCTCACAGTGCGCTCACATCGGCAACATCAACAACTCGGGGATaGGAGTGTCCTTCACTGGCA | + |
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Preference number: 4 (lower is better) Translates to: EPHLTSQTHPHSALTSATSTTRG*ECPSLA Trigger: TGCCAGTGAAGGACACTCTCATCCCCGAGTTGTTGA...TGTTGCCGATGTGAGCGCACTGTGAGGGTGAGTCTGGCTTGTTAGATGGGGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR TCA 90 bp | GCTCTTCAGGCTCCAGAGTTAGAAGTCACCACCTTGTCTTACTTCCATTCTCCCGCTGATCTCCTCGTTTaGGGCCCCCATGTCTGTCAG | + |
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Preference number: 4 (lower is better) Translates to: ALQAPELEVTTLSYFHSPADLLV*GPHVCQ Trigger: CTGACAGACATGGGGGCCTCAAACGAGGAGATCAGC...GGGAGAATGGAAGTAAGACAAGGTGGTGACTTCTAACTCTGGAGCCTGAAGAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR CCA 90 bp | TATGAAGCCACCTGTCTCTGTATCTTAGACACATCCCTCCTGCCCTTGCCACCTGGCCCTCTTCTGTTTTaGGTAGCTCAACAACTCGGG | + |
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Preference number: 4 (lower is better) Translates to: YEATCLCILDTSLLPLPPGPLLF*VAQQLG Trigger: CCCGAGTTGTTGAGCTACCCAAAACAGAAGAGGGCC...AGGTGGCAAGGGCAGGAGGGATGTGTCTAAGATACAGAGACAGGTGGCTTCATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR TCA 90 bp | ACGTCTATGCCAAGTCATGCTGACGCTTTCCAGGTAAGCCATAACCGTATTTTCCTTCAGGGCTGCTGCTaGTGTCCACCGTCTCATAAA | + |
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Preference number: 4 (lower is better) Translates to: TSMPSHADAFQVSHNRIFLQGCC*CPPSHK Trigger: TTTATGAGACGGTGGACATCAGCAGCAGCCCTGAAG...GAAAATACGGTTATGGCTTACCTGGAAAGCGTCAGCATGACTTGGCATAGACGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR GCA 90 bp | GCTCTTCAGGCTCCAGAGTTAGAAGTCACCACCTTGTCTTACTTCCATTCTCCCTTCACTGGCAGCAAATaGAGCAACAGTAGCCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: ALQAPELEVTTLSYFHSPFTGSK*SNSSLC Trigger: GCAAAGGCTACTGTTGCTGCATTTGCTGCCAGTGAA...GGGAGAATGGAAGTAAGACAAGGTGGTGACTTCTAACTCTGGAGCCTGAAGAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR TCA 90 bp | GCTCTTCAGGCTCCAGAGTTAGAAGTCACCACCTTGTCTTACTTCCATTCTCCCTTGTCTGCGTTTTGCTaGTCTCATTTTCTCAAAGCG | + |
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Preference number: 4 (lower is better) Translates to: ALQAPELEVTTLSYFHSPLSAFC*SHFLKA Trigger: CGCTTTGAGAAAATGAGATCAGCAAAACGCAGACAA...GGGAGAATGGAAGTAAGACAAGGTGGTGACTTCTAACTCTGGAGCCTGAAGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR GCA 90 bp | ACGTCTATGCCAAGTCATGCTGACGCTTTCCAGGTAAGCCATAACCGTATTTTCACAATTCAATTGCTCTaGAGATATCCCTTTCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: TSMPSHADAFQVSHNRIFTIQLL*RYPFPA Trigger: GGCTGGAAAGGGATATCTGCAGAGCAATTGAATTGT...GAAAATACGGTTATGGCTTACCTGGAAAGCGTCAGCATGACTTGGCATAGACGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR GCA 90 bp | GCAAACAAAATACAGACATCTGAAGTTTCATGTCAGGAACCACCACGGATTTTGACCGCTTTCTCATGGTaGTCCCCTTCAACACTCACT | + |
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Preference number: 4 (lower is better) Translates to: ANKIQTSEVSCQEPPRILTAFSW*SPSTLT Trigger: AGTGAGTGTTGAAGGGGAGCACCATGAGAAAGCGGT...CAAAATCCGTGGTGGTTCCTGACATGAAACTTCAGATGTCTGTATTTTGTTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR CCA 90 bp | ATTATAGATATGTTATGTTCCAAGTACAAAAGGCAGCAGAGACGCCAATACTCAAGCCTGAAGTTTCTGTaGCGGCACCTCTCCACTCCT | + |
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Preference number: 4 (lower is better) Translates to: IIDMLCSKYKRQQRRQYSSLKFL*RHLSTP Trigger: AGGAGTGGAGAGGTGCCGCCACAGAAACTTCAGGCT...TGAGTATTGGCGTCTCTGCTGCCTTTTGTACTTGGAACATAACATATCTATAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR CCA 90 bp | GCAAACAAAATACAGACATCTGAAGTTTCATGTCAGGAACCACCACGGATTTTGTCTACCGCTTTCTCATaGTGCTCCCCTTCAACACTC | + |
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Preference number: 4 (lower is better) Translates to: ANKIQTSEVSCQEPPRILSTAFS*CSPSTL Trigger: GAGTGTTGAAGGGGAGCACCATGAGAAAGCGGTAGA...CAAAATCCGTGGTGGTTCCTGACATGAAACTTCAGATGTCTGTATTTTGTTTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR TCA 90 bp | ATTATAGATATGTTATGTTCCAAGTACAAAAGGCAGCAGAGACGCCAATACTCAACTCTTTGCAAAGCCTaGAGTTTCTGTGGCGGCACC | + |
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Preference number: 4 (lower is better) Translates to: IIDMLCSKYKRQQRRQYSTLCKA*SFCGGT Trigger: GGTGCCGCCACAGAAACTTCAGGCTTTGCAAAGAGT...TGAGTATTGGCGTCTCTGCTGCCTTTTGTACTTGGAACATAACATATCTATAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR GCA 90 bp | GCAAACAAAATACAGACATCTGAAGTTTCATGTCAGGAACCACCACGGATTTTGAGTAGCCTTTGCAGTTaGATTGGCTCTCACTTCAGG | + |
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Preference number: 4 (lower is better) Translates to: ANKIQTSEVSCQEPPRILSSLCS*IGSHFR Trigger: CCTGAAGTGAGAGCCAATGCAACTGCAAAGGCTACT...CAAAATCCGTGGTGGTTCCTGACATGAAACTTCAGATGTCTGTATTTTGTTTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR CCA 90 bp | ATTATAGATATGTTATGTTCCAAGTACAAAAGGCAGCAGAGACGCCAATACTCACCTTTGCAGTTGCATTaGCTCTCACTTCAGGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: IIDMLCSKYKRQQRRQYSPLQLH*LSLQGC Trigger: GCAGCCCTGAAGTGAGAGCCAATGCAACTGCAAAGG...TGAGTATTGGCGTCTCTGCTGCCTTTTGTACTTGGAACATAACATATCTATAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR TCA 90 bp | CGTGAGAAAAACAGTGTATGCTTCTCTATAACCATAAGTGATGCTAAAACAGGCTTGCAGAACTCACTCTaGAGGACTCTTTGCAAAGCC | + |
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Preference number: 4 (lower is better) Translates to: REKNSVCFSITISDAKTGLQNSL*RTLCKA Trigger: GGCTTTGCAAAGAGTCCTTCAGAGTGAGTTCTGCAA...GCCTGTTTTAGCATCACTTATGGTTATAGAGAAGCATACACTGTTTTTCTCACG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR GCA 90 bp | CGTGAGAAAAACAGTGTATGCTTCTCTATAACCATAAGTGATGCTAAAACAGGCAGCAACAGTAGCCTTTaGAGTTGCATTGGCTCTCAC | + |
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Preference number: 4 (lower is better) Translates to: REKNSVCFSITISDAKTGSNSSL*SCIGSH Trigger: GTGAGAGCCAATGCAACTGCAAAGGCTACTGTTGCT...GCCTGTTTTAGCATCACTTATGGTTATAGAGAAGCATACACTGTTTTTCTCACG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR TCA 90 bp | GGTACAATTACGAGAGTCCTTATCAGTATCATTCCACAGTATAATCACATGTACTTAACAGAAAGTAGCTaGTCTCCTCGTTTGAGGCCC | + |
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Preference number: 4 (lower is better) Translates to: GTITRVLISIIPQYNHMYLTESS*SPRLRP Trigger: GGGCCTCAAACGAGGAGATCAGCTACTTTCTGTTAA...GTACATGTGATTATACTGTGGAATGATACTGATAAGGACTCTCGTAATTGTACC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR GCA 90 bp | AAGTTTCATGTCAGGAACCACCACGGATTTTGGTTTTTACTCTATGTAAAGGTTCTCCAACAATTCAATTaGTCTGCAGATATCCCTTTC | + |
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Preference number: 4 (lower is better) Translates to: KFHVRNHHGFWFLLYVKVLQQFN*SADIPF Trigger: GAAAGGGATATCTGCAGAGCAATTGAATTGTTGGAG...AACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR CCA 90 bp | AAGTTTCATGTCAGGAACCACCACGGATTTTGGTTTTTACTCTATGTAAAGGTTGTCAGCAATTCCACCTaGAATTATCCGCGATATATA | + |
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Preference number: 4 (lower is better) Translates to: KFHVRNHHGFWFLLYVKVVSNST*NYPRYI Trigger: TATATATCGCGGATAATTCCAGGTGGAATTGCTGAC...AACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| 3UTR CAA 72 bp | ACATCTGAAGTTTCATGTCAGGAACCACCACGGATTTaGGTTTTTACTCTATGTAAAGGTTGTTTTACACAC | + |
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Preference number: 4 (lower is better) Translates to: TSEVSCQEPPRI*VFTLCKGCFTH Trigger: GTGTGTAAAACAACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTTCAGATGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS TCA 90 bp | TCATGGTGCTCCCCTTCAACACTCACTCCATTAACAGAAAGTAGCTaGTCTCCTCGTTTGAGGCCCCCATGTCTGTCAGCAATTCCACCT | + |
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Preference number: 5 (lower is better) Translates to: SWCSPSTLTPLTESS*SPRLRPPCLSAIPP Trigger: AGGTGGAATTGCTGACAGACATGGGGGCCTCAAACGAGGAGATCAGCTACTTTCTGTTAATGGAGTGAGTGTTGAAGGGGAGCACCATGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR CAA 90 bp | ACGTCTATGCCAAGTCATGCTGACGCTTTCCAGGTAAGCCATAACCGTATTTTCACTCTGAAGGACTCTTaGCAAAGCCTGAAGTTTCTG | + |
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Preference number: 5 (lower is better) Translates to: TSMPSHADAFQVSHNRIFTLKDS*QSLKFL Trigger: CAGAAACTTCAGGCTTTGCAAAGAGTCCTTCAGAGT...GAAAATACGGTTATGGCTTACCTGGAAAGCGTCAGCATGACTTGGCATAGACGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR CAA 90 bp | GGTACAATTACGAGAGTCCTTATCAGTATCATTCCACAGTATAATCACATGTACGCCTTTGCAGTTGCATaGGCTCTCACTTCAGGGCTG | + |
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Preference number: 5 (lower is better) Translates to: GTITRVLISIIPQYNHMYAFAVA*ALTSGL Trigger: CAGCCCTGAAGTGAGAGCCAATGCAACTGCAAAGGC...GTACATGTGATTATACTGTGGAATGATACTGATAAGGACTCTCGTAATTGTACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR CAA 90 bp | ATTATAGATATGTTATGTTCCAAGTACAAAAGGCAGCAGAGACGCCAATACTCAAGGCCCTCTTCTGTTTaGGGTAGCTCAACAACTCGG | + |
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Preference number: 5 (lower is better) Translates to: IIDMLCSKYKRQQRRQYSRPSSV*GSSTTR Trigger: CCGAGTTGTTGAGCTACCCAAAACAGAAGAGGGCCT...TGAGTATTGGCGTCTCTGCTGCCTTTTGTACTTGGAACATAACATATCTATAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR CAA 90 bp | GGTACAATTACGAGAGTCCTTATCAGTATCATTCCACAGTATAATCACATGTACTTGCCTCCCATAATATaGAATCCAAGGCCCTCTTCT | + |
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Preference number: 5 (lower is better) Translates to: GTITRVLISIIPQYNHMYLPPII*NPRPSS Trigger: AGAAGAGGGCCTTGGATTCAATATTATGGGAGGCAA...GTACATGTGATTATACTGTGGAATGATACTGATAAGGACTCTCGTAATTGTACC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS-3UTR CAA 90 bp | AAGTTTCATGTCAGGAACCACCACGGATTTTGGTTTTTACTCTATGTAAAGGTTTCTGTTGTCTGCGTTTaGCTGATCTCATTTTCTCAA | + |
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Preference number: 5 (lower is better) Translates to: KFHVRNHHGFWFLLYVKVSVVCV*LISFSQ Trigger: TTGAGAAAATGAGATCAGCAAAACGCAGACAACAGA...AACCTTTACATAGAGTAAAAACCAAAATCCGTGGTGGTTCCTGACATGAAACTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS TCA 72 bp | TCCCCTTCAACACTCACTCCATTAACAGAAAGTAGCTaGTCTCCTCGTTTGAGGCCCCCATGTCTGTCAGCA | + |
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Preference number: 6 (lower is better) Translates to: SPSTLTPLTESS*SPRLRPPCLSA Trigger: TGCTGACAGACATGGGGGCCTCAAACGAGGAGATCAGCTACTTTCTGTTAATGGAGTGAGTGTTGAAGGGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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| CDS TCA 72 bp | TTGCAGTTGCATTGGCTCTCACTTCAGGGCTGCTGCTaGTGTCCACCGTCTCATAAACATGTTCGTATACCT | + |
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Preference number: 6 (lower is better) Translates to: LQLHWLSLQGCC*CPPSHKHVRIP Trigger: AGGTATACGAACATGTTTATGAGACGGTGGACATCAGCAGCAGCCCTGAAGTGAGAGCCAATGCAACTGCAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028583.8 |
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