Pregenerated sensors for LIN7B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003872Ensembl transcript IDs: ENSMUST00000003971.10, ENSMUST00000210865.2
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | GAGCCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCCTGGTCCACGACCCTGGGATGTaGGTGGCCCTCACTGGCCGT | + |
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Preference number: 4 (lower is better) Translates to: EPVTINNTVQGRRRRVLVHDPGM*VALTGR Trigger: ACGGCCAGTGAGGGCCACGCACATCCCAGGGTCGTG...GACCAGGACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS-3UTR TCA 90 bp | CCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCCTGGTCTGTGGCCCTCACTGGCCGTaGAAGCAGCCACTGTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: PVTINNTVQGRRRRVLVCGPHWP*KQPLWP Trigger: AGGCCACAGTGGCTGCTTTCACGGCCAGTGAGGGCC...ACAGACCAGGACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS-3UTR GCA 90 bp | GTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCCTGGTCTGTGATGAGCAGAAGCGACTCTaGAGGACCCGCTGCAGGGCC | + |
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Preference number: 4 (lower is better) Translates to: VTINNTVQGRRRRVLVCDEQKRL*RTRCRA Trigger: GGCCCTGCAGCGGGTCCTGCAGAGTCGCTTCTGCTC...ATCACAGACCAGGACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS-3UTR TCA 90 bp | GTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCCTGGTCTGTGATGCTGGTCTCCCCTCTTaGGGCCACCATGGCGATCAG | + |
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Preference number: 4 (lower is better) Translates to: VTINNTVQGRRRRVLVCDAGLPS*GHHGDQ Trigger: CTGATCGCCATGGTGGCCTCAAGAGGGGAGACCAGC...ATCACAGACCAGGACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003971.10 ENSMUST00000210865.2 |
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| CDS-3UTR CCA 90 bp | AAGGAGCCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCCTGGTAGTTCCACGACCCTaGGATGTGCGTGGCCCTCAC | + |
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Preference number: 4 (lower is better) Translates to: KEPVTINNTVQGRRRRVLVVPRP*DVRGPH Trigger: GTGAGGGCCACGCACATCCCAGGGTCGTGGAACTAC...CAGGACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGGCTCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS-3UTR TCA 90 bp | CCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCCTGGTCTGTCACCACCAGTTTCACTaGGCCCTGTGCAGCCTTCAG | + |
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Preference number: 4 (lower is better) Translates to: PVTINNTVQGRRRRVLVCHHQFH*ALCSLQ Trigger: CTGAAGGCTGCACAGGGCTCAGTGAAACTGGTGGTG...ACAGACCAGGACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS-3UTR GCA 90 bp | AATAAGGAGCCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCTCGCCTTCCACACTCTaGAGGGCAGGCCTCGCACAG | + |
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Preference number: 4 (lower is better) Translates to: NKEPVTINNTVQGRRRRVSPSTL*RAGLAQ Trigger: CTGTGCGAGGCCTGCCCTGCAGAGTGTGGAAGGCGA...GACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGGCTCCTTATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210865.2 |
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| CDS-3UTR TCA 90 bp | AATAAGGAGCCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCCCTCGGCGCTGCCAGTaGTGTCCAGCGTGTCATAGA | + |
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Preference number: 4 (lower is better) Translates to: NKEPVTINNTVQGRRRRVPRRCQ*CPACHR Trigger: TCTATGACACGCTGGACATCACTGGCAGCGCCGAGG...GACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGGCTCCTTATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS-3UTR CCA 90 bp | GTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCCTGGTCTGTGATCATACACCTCGCGGATaGCGGAGCAGAAGCGACTCT | + |
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Preference number: 4 (lower is better) Translates to: VTINNTVQGRRRRVLVCDHTPRG*RSRSDS Trigger: AGAGTCGCTTCTGCTCCGCCATCCGCGAGGTGTATG...ATCACAGACCAGGACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS-3UTR CCA 90 bp | AAGGAGCCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCCTGTCCACCGCCTTTTCATaGTGTTCGCCTTCCACACTC | + |
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Preference number: 4 (lower is better) Translates to: KEPVTINNTVQGRRRRVLSTAFS*CSPSTL Trigger: GAGTGTGGAAGGCGAACACCATGAAAAGGCGGTGGA...CAGGACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGGCTCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003971.10 ENSMUST00000210865.2 |
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| CDS-3UTR CCA 90 bp | TTAAATAAGGAGCCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGACCCTGGGATGTGCGTaGCCCTCACTGGCCGTGAAA | + |
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Preference number: 4 (lower is better) Translates to: LNKEPVTINNTVQGRRRRTLGCA*PSLAVK Trigger: TTTCACGGCCAGTGAGGGCCACGCACATCCCAGGGT...CCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGGCTCCTTATTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS-3UTR CCA 90 bp | AATAAGGAGCCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCCTCGAGAGATATAGATaGGTGAGTTCTGCTCCTTGC | + |
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Preference number: 4 (lower is better) Translates to: NKEPVTINNTVQGRRRRVLERYR*VSSAPC Trigger: GCAAGGAGCAGAACTCACCCATCTATATCTCTCGAG...GACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGGCTCCTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS GCA 90 bp | CGCTGCAGGGCCTGCAGCTTCTGCGGGGGCAGCTCTCCGCTGCGCTaGAGCCGCTCCAGCAGCTCCACAGCCCGGGACACGTCCCGCTCC | + |
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Preference number: 5 (lower is better) Translates to: RCRACSFCGGSSPLR*SRSSSSTARDTSRS Trigger: GGAGCGGGACGTGTCCCGGGCTGTGGAGCTGCTGGAGCGGCTGCAGCGCAGCGGAGAGCTGCCCCCGCAGAAGCTGCAGGCCCTGCAGCG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS-3UTR CAA 90 bp | GAGCCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCCTGGTCAGCTGGTCTCCCCTCTaGAGGCCACCATGGCGATCA | + |
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Preference number: 5 (lower is better) Translates to: EPVTINNTVQGRRRRVLVSWSPL*RPPWRS Trigger: TGATCGCCATGGTGGCCTCAAGAGGGGAGACCAGCT...GACCAGGACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003971.10 ENSMUST00000210865.2 |
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| CDS-3UTR CAA 90 bp | CCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCCTGGTCTGTAGCTGGTCTCCCCTCTaGAGGCCACCATGGCGATCA | + |
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Preference number: 5 (lower is better) Translates to: PVTINNTVQGRRRRVLVCSWSPL*RPPWRS Trigger: TGATCGCCATGGTGGCCTCAAGAGGGGAGACCAGCT...ACAGACCAGGACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003971.10 ENSMUST00000210865.2 |
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| CDS-3UTR CAA 90 bp | AATAAGGAGCCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCGGTGAGTTCTGCTCCTaGCCACCCATGATGTTGAAG | + |
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Preference number: 5 (lower is better) Translates to: NKEPVTINNTVQGRRRRVGEFCS*PPMMLK Trigger: CTTCAACATCATGGGTGGCAAGGAGCAGAACTCACC...GACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGGCTCCTTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS-3UTR CAA 90 bp | AATAAGGAGCCAGTGACAATAAATAATACTGTACAGGGGAGGAGAAGGAGGGTCTTGCCACCCATGATGTaGAAGCCCAAACCCTCATCA | + |
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Preference number: 5 (lower is better) Translates to: NKEPVTINNTVQGRRRRVLPPMM*KPKPSS Trigger: TGATGAGGGTTTGGGCTTCAACATCATGGGTGGCAA...GACCCTCCTTCTCCTCCCCTGTACAGTATTATTTATTGTCACTGGCTCCTTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS CCA 72 bp | ACAGACAGCAGCTGGTCTCCCCTCTTGAGGCCACCATaGCGATCAGCCACGCCCCCAGGGATGACTCGAGAG | + |
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Preference number: 6 (lower is better) Translates to: TDSSWSPLLRPP*RSATPPGMTRE Trigger: CTCTCGAGTCATCCCTGGGGGCGTGGCTGATCGCCATGGTGGCCTCAAGAGGGGAGACCAGCTGCTGTCTGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003971.10 ENSMUST00000210865.2 |
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| CDS CAA 72 bp | CTCACACCATTCACAGACAGCAGCTGGTCTCCCCTCTaGAGGCCACCATGGCGATCAGCCACGCCCCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: LTPFTDSSWSPL*RPPWRSATPPG Trigger: CCCTGGGGGCGTGGCTGATCGCCATGGTGGCCTCAAGAGGGGAGACCAGCTGCTGTCTGTGAATGGTGTGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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| CDS CAA 72 bp | GACACACCATTCACAGACAGCAGCTGGTCTCCCCTCTaGAGGCCACCATGGCGATCAGCCACGCCCCCAGGG | + |
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Preference number: 6 (lower is better) Translates to: DTPFTDSSWSPL*RPPWRSATPPG Trigger: CCCTGGGGGCGTGGCTGATCGCCATGGTGGCCTCAAGAGGGGAGACCAGCTGCTGTCTGTGAATGGTGTGTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000210865.2 |
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| CDS CCA 72 bp | TCAGTCTTCGGTAGTTCCACGACCCTGGGATGTGCGTaGCCCTCACTGGCCGTGAAAGCAGCCACTGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: SVFGSSTTLGCA*PSLAVKAATVA Trigger: GGCCACAGTGGCTGCTTTCACGGCCAGTGAGGGCCACGCACATCCCAGGGTCGTGGAACTACCGAAGACTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000003971.10 |
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