Pregenerated sensors for LIN7A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019906Ensembl transcript IDs: ENSMUST00000020057.16, ENSMUST00000105280.5, ENSMUST00000218031.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGAGGTCAATGTGTAGGTTCCTTTCACGTGGCCACAACCTTGAACTaGTGCAGTTTGAACGATAGCCTAATGAAGGGTTTGCTAATCTCC | + |
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Preference number: 1 (lower is better) Translates to: RGQCVGSFHVATTLN*CSLNDSLMKGLLIS Trigger: GGAGATTAGCAAACCCTTCATTAGGCTATCGTTCAAACTGCATCAGTTCAAGGTTGTGGCCACGTGAAAGGAACCTACACATTGACCTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 |
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| 3UTR GCA 90 bp | GATTTGTTCAAAAGTCACGGACTTTATTCTTACACTGTTTCAGTCTaGAGACTGGAATACTTCACTCCCTCAATACACTGCGAGTTTCCA | + |
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Preference number: 1 (lower is better) Translates to: DLFKSHGLYSYTVSV*RLEYFTPSIHCEFP Trigger: TGGAAACTCGCAGTGTATTGAGGGAGTGAAGTATTCCAGTCTGCAGACTGAAACAGTGTAAGAATAAAGTCCGTGACTTTTGAACAAATC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 |
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| 3UTR-3UTR GCA 90 bp | TCAGTCTGCAGACTGGAATACTTCACTCCCTCAATACACTGCGAGTTTCCACTGTTCCCTTTTTCTGTGTaGTGGGATTCCGGAGCACGG | + |
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Preference number: 2 (lower is better) Translates to: SVCRLEYFTPSIHCEFPLFPFSV*WDSGAR Trigger: CCGTGCTCCGGAATCCCAGCACACAGAAAAAGGGAA...CAGTGGAAACTCGCAGTGTATTGAGGGAGTGAAGTATTCCAGTCTGCAGACTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| 3UTR-3UTR GCA 90 bp | TACTTCACTCCCTCAATACACTGCGAGTTTCCACTGACATGGATGGAAAAGGTCTTCCCTTTTTCTGTGTaGTGGGATTCCGGAGCACGG | + |
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Preference number: 2 (lower is better) Translates to: YFTPSIHCEFPLTWMEKVFPFSV*WDSGAR Trigger: CCGTGCTCCGGAATCCCAGCACACAGAAAAAGGGAA...GACCTTTTCCATCCATGTCAGTGGAAACTCGCAGTGTATTGAGGGAGTGAAGTA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGGTGCCCAGAGGAGGAAGATACTGAATTGCCTTGGTAACGAATGGATACACTTCCAAATTTGTGACTaGCGGATGATTGACCTGCTA | + |
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Preference number: 2 (lower is better) Translates to: AGAQRRKILNCLGNEWIHFQICD*RMIDLL Trigger: TAGCAGGTCAATCATCCGCCAGTCACAAATTTGGAA...GTGTATCCATTCGTTACCAAGGCAATTCAGTATCTTCCTCCTCTGGGCACCAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| 3UTR-3UTR TCA 90 bp | ATATCAAGTGAGGAGGAATTCATAAAACCAAGAGAGTCGCTTACCAGAGTAGTGGTGTTCACAGCTTTGTaGCGGGTGTCATTACTGGTG | + |
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Preference number: 2 (lower is better) Translates to: ISSEEEFIKPRESLTRVVVFTAL*RVSLLV Trigger: CACCAGTAATGACACCCGTCACAAAGCTGTGAACAC...CACTACTCTGGTAAGCGACTCTCTTGGTTTTATGAATTCCTCCTCACTTGATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| 3UTR-3UTR GCA 90 bp | TCACTTAATCCTAGCCCAGGTGATTTGTTCAAAAGTCACGGACTTTATTCTTACTTCCCTTTTTCTGTGTaGTGGGATTCCGGAGCACGG | + |
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Preference number: 2 (lower is better) Translates to: SLNPSPGDLFKSHGLYSYFPFSV*WDSGAR Trigger: CCGTGCTCCGGAATCCCAGCACACAGAAAAAGGGAA...GTAAGAATAAAGTCCGTGACTTTTGAACAAATCACCTGGGCTAGGATTAAGTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 |
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| 3UTR-3UTR GCA 90 bp | GAGGGCAGGTTACATATATCAAGTGAGGAGGAATTCATAAAACCAAGAGAGTCGCAATTCAGACAGCTCTaGAACATAGACTGTGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: EGRLHISSEEEFIKPRESQFRQL*NIDCGR Trigger: CCTTCCACAGTCTATGTTGCAGAGCTGTCTGAATTG...CGACTCTCTTGGTTTTATGAATTCCTCCTCACTTGATATATGTAACCTGCCCTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| 3UTR-3UTR TCA 90 bp | AATGAAGGGTTTGCTAATCTCCGGAGGAGCCTTAGACCAAAGATTCACTTAATCAGAGGAGGAAGATACTaGATTGCCTTGGTAACGAAT | + |
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Preference number: 2 (lower is better) Translates to: NEGFANLRRSLRPKIHLIRGGRY*IALVTN Trigger: ATTCGTTACCAAGGCAATTCAGTATCTTCCTCCTCT...GATTAAGTGAATCTTTGGTCTAAGGCTCCTCCGGAGATTAGCAAACCCTTCATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 |
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| 3UTR-3UTR TCA 90 bp | AGAAGAATGGAGGTTGTAGCTAAATCAAATTCCAATTCAGACAGCTCTGCAACAACTGCGAGTTTCCACTaGCATGGATGGAAAAGGTCT | + |
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Preference number: 2 (lower is better) Translates to: RRMEVVAKSNSNSDSSATTASFH*HGWKRS Trigger: AGACCTTTTCCATCCATGTCAGTGGAAACTCGCAGT...TGTTGCAGAGCTGTCTGAATTGGAATTTGATTTAGCTACAACCTCCATTCTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 |
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| 3UTR-3UTR GCA 90 bp | GTGATTTGTTCAAAAGTCACGGACTTTATTCTTACACTGTTTCAGTCTGCAGACACTCCCTCAATACACTaGGAGTTTCCACTGACATGG | + |
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Preference number: 2 (lower is better) Translates to: VICSKVTDFILTLFQSADTPSIH*EFPLTW Trigger: CCATGTCAGTGGAAACTCGCAGTGTATTGAGGGAGT...GTCTGCAGACTGAAACAGTGTAAGAATAAAGTCCGTGACTTTTGAACAAATCAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 |
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| 3UTR-3UTR CCA 90 bp | AATGGATACACCATGTGTTCACAGCTTTGTGACGGGTGTCATTACTGGTGTTTTTTCCAAATTTGTGACTaGCGGATGATTGACCTGCTA | + |
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Preference number: 2 (lower is better) Translates to: NGYTMCSQLCDGCHYWCFFQICD*RMIDLL Trigger: TAGCAGGTCAATCATCCGCCAGTCACAAATTTGGAA...AAAACACCAGTAATGACACCCGTCACAAAGCTGTGAACACATGGTGTATCCATT 42% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| 3UTR-3UTR CCA 90 bp | GATACACCATGTGTTCACAGCTTTGTGACGGGTGTCATTACTGGTGTTTTCTTTTTCCAAATTTGTGACTaGCGGATGATTGACCTGCTA | + |
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Preference number: 2 (lower is better) Translates to: DTPCVHSFVTGVITGVFFFQICD*RMIDLL Trigger: TAGCAGGTCAATCATCCGCCAGTCACAAATTTGGAA...AAAGAAAACACCAGTAATGACACCCGTCACAAAGCTGTGAACACATGGTGTATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| 3UTR-3UTR GCA 90 bp | ACTGTTTATTTACAAATGGGAATGTGCAAAAATGAAACAGACTTCCCCTCAGAGACTCCCTCAATACACTaGGAGTTTCCACTGACATGG | + |
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Preference number: 2 (lower is better) Translates to: TVYLQMGMCKNETDFPSETPSIH*EFPLTW Trigger: CCATGTCAGTGGAAACTCGCAGTGTATTGAGGGAGT...CTCTGAGGGGAAGTCTGTTTCATTTTTGCACATTCCCATTTGTAAATAAACAGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| 3UTR-3UTR CCA 90 bp | TCACTTAATCCTAGCCCAGGTGATTTGTTCAAAAGTCACGGACTTTATTCTTACTGCCTTGGTAACGAATaGATACACCATGTGTTCACA | + |
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Preference number: 2 (lower is better) Translates to: SLNPSPGDLFKSHGLYSYCLGNE*IHHVFT Trigger: TGTGAACACATGGTGTATCCATTCGTTACCAAGGCA...GTAAGAATAAAGTCCGTGACTTTTGAACAAATCACCTGGGCTAGGATTAAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 |
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| 3UTR CCA 72 bp | GCTGGGATTCCGGAGCACGGGTTCCAAATTTGTGACTaGCGGATGATTGACCTGCTAGCTTTCCTTCGAGCG | + |
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Preference number: 3 (lower is better) Translates to: AGIPEHGFQICD*RMIDLLAFLRA Trigger: CGCTCGAAGGAAAGCTAGCAGGTCAATCATCCGCCAGTCACAAATTTGGAACCCGTGCTCCGGAATCCCAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| 3UTR TCA 72 bp | TGTGTAGGTTCCTTTCACGTGGCCACAACCTTGAACTaGTGCAGTTTGAACGATAGCCTAATGAAGGGTTTG | + |
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Preference number: 3 (lower is better) Translates to: CVGSFHVATTLN*CSLNDSLMKGL Trigger: CAAACCCTTCATTAGGCTATCGTTCAAACTGCATCAGTTCAAGGTTGTGGCCACGTGAAAGGAACCTACACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 |
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| 3UTR CCA 72 bp | CCCCTCAGAGAAAGCAGTGTCTGTCATTTACAATACTaGTATCAGTGGGTACTACATACCTCAACGGAAGAG | + |
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Preference number: 3 (lower is better) Translates to: PLRESSVCHLQY*YQWVLHTSTEE Trigger: CTCTTCCGTTGAGGTATGTAGTACCCACTGATACCAGTATTGTAAATGACAGACACTGCTTTCTCTGAGGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| 3UTR CCA 72 bp | ACGGACTTTATTCTTACACTGTTTCAGTCTGCAGACTaGAATACTTCACTCCCTCAATACACTGCGAGTTTC | + |
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Preference number: 3 (lower is better) Translates to: TDFILTLFQSAD*NTSLPQYTASF Trigger: GAAACTCGCAGTGTATTGAGGGAGTGAAGTATTCCAGTCTGCAGACTGAAACAGTGTAAGAATAAAGTCCGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| 3UTR GCA 72 bp | AAAAGTCACGGACTTTATTCTTACACTGTTTCAGTCTaGAGACTGGAATACTTCACTCCCTCAATACACTGC | + |
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Preference number: 3 (lower is better) Translates to: KSHGLYSYTVSV*RLEYFTPSIHC Trigger: GCAGTGTATTGAGGGAGTGAAGTATTCCAGTCTGCAGACTGAAACAGTGTAAGAATAAAGTCCGTGACTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR CCA 90 bp | ATTCCGGAGCACGGGTTCCAAATTTGTGACTGGCGGATGATTGACCTGCTAGCTACCCGAGGGTGGGAGTaGCCTTCGCTGGCTGCAAAA | + |
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Preference number: 4 (lower is better) Translates to: IPEHGFQICDWRMIDLLATRGWE*PSLAAK Trigger: TTTTGCAGCCAGCGAAGGCCACTCCCACCCTCGGGT...AGCTAGCAGGTCAATCATCCGCCAGTCACAAATTTGGAACCCGTGCTCCGGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CCA 90 bp | ATTCCGGAGCACGGGTTCCAAATTTGTGACTGGCGGATGATTGACCTGCTAGCTTCAACTACCCGAGGGTaGGAGTGGCCTTCGCTGGCT | + |
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Preference number: 4 (lower is better) Translates to: IPEHGFQICDWRMIDLLASTTRG*EWPSLA Trigger: AGCCAGCGAAGGCCACTCCCACCCTCGGGTAGTTGA...AGCTAGCAGGTCAATCATCCGCCAGTCACAAATTTGGAACCCGTGCTCCGGAAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR GCA 90 bp | GGGTTCCAAATTTGTGACTGGCGGATGATTGACCTGCTAGCTTTCCTTCGAGCGCAATGTCGCCATGTCTaGCGTGGGAGCCGAAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: GFQICDWRMIDLLAFLRAQCRHV*RGSRSD Trigger: GTCACTTCGGCTCCCACGGCAGACATGGCGACATTG...CGCTCGAAGGAAAGCTAGCAGGTCAATCATCCGCCAGTCACAAATTTGGAACCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR TCA 90 bp | CACTCCCTCAATACACTGCGAGTTTCCACTGACATGGATGGAAAAGGTCTGAGTCCACCCCTCCAGGGATaGTGCGGGAGATGTAAATCG | + |
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Preference number: 4 (lower is better) Translates to: HSLNTLRVSTDMDGKGLSPPLQG*CGRCKS Trigger: CGATTTACATCTCCCGCATCATCCCTGGAGGGGTGG...ACTCAGACCTTTTCCATCCATGTCAGTGGAAACTCGCAGTGTATTGAGGGAGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR TCA 90 bp | TCAGTCTGCAGACTGGAATACTTCACTCCCTCAATACACTGCGAGTTTCCACTGCCACCCCTCCAGGGATaGTGCGGGAGATGTAAATCG | + |
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Preference number: 4 (lower is better) Translates to: SVCRLEYFTPSIHCEFPLPPLQG*CGRCKS Trigger: CGATTTACATCTCCCGCATCATCCCTGGAGGGGTGG...CAGTGGAAACTCGCAGTGTATTGAGGGAGTGAAGTATTCCAGTCTGCAGACTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR CCA 90 bp | TCCCTTTTTCTGTGTGCTGGGATTCCGGAGCACGGGTTCCAAATTTGTGACTGGTCCACAGCTTTCTCATaGTGCTCCCCTTCCACACTC | + |
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Preference number: 4 (lower is better) Translates to: SLFLCAGIPEHGFQICDWSTAFS*CSPSTL Trigger: GAGTGTGGAAGGGGAGCACCATGAGAAAGCTGTGGA...CCAGTCACAAATTTGGAACCCGTGCTCCGGAATCCCAGCACACAGAAAAAGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR GCA 90 bp | GCCCAGAGGAGGAAGATACTGAATTGCCTTGGTAACGAATGGATACACCATGTGGTGGCCTTCGCTGGCTaGAAAAGCTGCAACTGTTGC | + |
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Preference number: 4 (lower is better) Translates to: AQRRKILNCLGNEWIHHVVAFAG*KSCNCC Trigger: GCAACAGTTGCAGCTTTTGCAGCCAGCGAAGGCCAC...CACATGGTGTATCCATTCGTTACCAAGGCAATTCAGTATCTTCCTCCTCTGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CCA 90 bp | TTCAGTCTGCAGACTGGAATACTTCACTCCCTCAATACACTGCGAGTTTCCACTGGGAGTGGCCTTCGCTaGCTGCAAAAGCTGCAACTG | + |
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Preference number: 4 (lower is better) Translates to: FSLQTGILHSLNTLRVSTGSGLR*LQKLQL Trigger: CAGTTGCAGCTTTTGCAGCCAGCGAAGGCCACTCCC...AGTGGAAACTCGCAGTGTATTGAGGGAGTGAAGTATTCCAGTCTGCAGACTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CCA 90 bp | ATTCCGGAGCACGGGTTCCAAATTTGTGACTGGCGGATGATTGACCTGCTAGCTGCCTTCATCAGTCTTTaGCAGTTCAACTACCCGAGG | + |
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Preference number: 4 (lower is better) Translates to: IPEHGFQICDWRMIDLLAAFISL*QFNYPR Trigger: CCTCGGGTAGTTGAACTGCCAAAGACTGATGAAGGC...AGCTAGCAGGTCAATCATCCGCCAGTCACAAATTTGGAACCCGTGCTCCGGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CCA 90 bp | GGGTTCCAAATTTGTGACTGGCGGATGATTGACCTGCTAGCTTTCCTTCGAGCGCTCTTCCAGGACTTTTaGGGTGTATCTGACCACCAG | + |
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Preference number: 4 (lower is better) Translates to: GFQICDWRMIDLLAFLRALFQDF*GVSDHQ Trigger: CTGGTGGTCAGATACACCCCAAAAGTCCTGGAAGAG...CGCTCGAAGGAAAGCTAGCAGGTCAATCATCCGCCAGTCACAAATTTGGAACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR CCA 90 bp | TCCCTTTTTCTGTGTGCTGGGATTCCGGAGCACGGGTTCCAAATTTGTGACTGGCTCTTCCAGGACTTTTaGGGTGTATCTGACCACCAG | + |
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Preference number: 4 (lower is better) Translates to: SLFLCAGIPEHGFQICDWLFQDF*GVSDHQ Trigger: CTGGTGGTCAGATACACCCCAAAAGTCCTGGAAGAG...CCAGTCACAAATTTGGAACCCGTGCTCCGGAATCCCAGCACACAGAAAAAGGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR CCA 90 bp | ATTGCCTTGGTAACGAATGGATACACCATGTGTTCACAGCTTTGTGACGGGTGTTCCAGAGTAAGCGGCTaGACCACTGTCAATGTCGCC | + |
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Preference number: 4 (lower is better) Translates to: IALVTNGYTMCSQLCDGCSRVSG*TTVNVA Trigger: GGCGACATTGACAGTGGTCCAGCCGCTTACTCTGGA...ACACCCGTCACAAAGCTGTGAACACATGGTGTATCCATTCGTTACCAAGGCAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CCA 90 bp | GGGTTCCAAATTTGTGACTGGCGGATGATTGACCTGCTAGCTTTCCTTCGAGCGCTGGAGCTTGTGCACTaGTACTTCTCCAGATTCTTG | + |
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Preference number: 4 (lower is better) Translates to: GFQICDWRMIDLLAFLRALELVH*YFSRFL Trigger: CAAGAATCTGGAGAAGTACCAGTGCACAAGCTCCAG...CGCTCGAAGGAAAGCTAGCAGGTCAATCATCCGCCAGTCACAAATTTGGAACCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CCA 90 bp | GCTGGTGCCCAGAGGAGGAAGATACTGAATTGCCTTGGTAACGAATGGATACACTTCACTGATAGCAGCTaGTCCCCTCTTTTGAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: AGAQRRKILNCLGNEWIHFTDSS*SPLLRP Trigger: AGGCCTCAAAAGAGGGGACCAGCTGCTATCAGTGAA...GTGTATCCATTCGTTACCAAGGCAATTCAGTATCTTCCTCCTCTGGGCACCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR TCA 90 bp | CACTCCCTCAATACACTGCGAGTTTCCACTGACATGGATGGAAAAGGTCTGAGTCTTTTGGGGTGTATCTaGCCACCAGCTTCACACTGT | + |
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Preference number: 4 (lower is better) Translates to: HSLNTLRVSTDMDGKGLSLLGCI*PPASHC Trigger: ACAGTGTGAAGCTGGTGGTCAGATACACCCCAAAAG...ACTCAGACCTTTTCCATCCATGTCAGTGGAAACTCGCAGTGTATTGAGGGAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR GCA 90 bp | TCAGTCTGCAGACTGGAATACTTCACTCCCTCAATACACTGCGAGTTTCCACTGACAGCTTTCTCATGGTaGTCCCCTTCCACACTCACT | + |
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Preference number: 4 (lower is better) Translates to: SVCRLEYFTPSIHCEFPLTAFSW*SPSTLT Trigger: AGTGAGTGTGGAAGGGGAGCACCATGAGAAAGCTGT...CAGTGGAAACTCGCAGTGTATTGAGGGAGTGAAGTATTCCAGTCTGCAGACTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR CCA 90 bp | ATTGCCTTGGTAACGAATGGATACACCATGTGTTCACAGCTTTGTGACGGGTGTTCCACAGCTTTCTCATaGTGCTCCCCTTCCACACTC | + |
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Preference number: 4 (lower is better) Translates to: IALVTNGYTMCSQLCDGCSTAFS*CSPSTL Trigger: GAGTGTGGAAGGGGAGCACCATGAGAAAGCTGTGGA...ACACCCGTCACAAAGCTGTGAACACATGGTGTATCCATTCGTTACCAAGGCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR CCA 90 bp | GGATACACCATGTGTTCACAGCTTTGTGACGGGTGTCATTACTGGTGTTTTCTTTCCACAGCTTTCTCATaGTGCTCCCCTTCCACACTC | + |
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Preference number: 4 (lower is better) Translates to: GYTMCSQLCDGCHYWCFLSTAFS*CSPSTL Trigger: GAGTGTGGAAGGGGAGCACCATGAGAAAGCTGTGGA...AAGAAAACACCAGTAATGACACCCGTCACAAAGCTGTGAACACATGGTGTATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR TCA 90 bp | TTCAGTCTGCAGACTGGAATACTTCACTCCCTCAATACACTGCGAGTTTCCACTTCTGAAGCACCTTTTTaGGAGACTGGAGCTTGTGCA | + |
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Preference number: 4 (lower is better) Translates to: FSLQTGILHSLNTLRVSTSEAPF*ETGACA Trigger: TGCACAAGCTCCAGTCTCTCAAAAAGGTGCTTCAGA...AGTGGAAACTCGCAGTGTATTGAGGGAGTGAAGTATTCCAGTCTGCAGACTGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR TCA 90 bp | GTGATTTGTTCAAAAGTCACGGACTTTATTCTTACACTGTTTCAGTCTGCAGACCCACCCCTCCAGGGATaGTGCGGGAGATGTAAATCG | + |
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Preference number: 4 (lower is better) Translates to: VICSKVTDFILTLFQSADPPLQG*CGRCKS Trigger: CGATTTACATCTCCCGCATCATCCCTGGAGGGGTGG...GTCTGCAGACTGAAACAGTGTAAGAATAAAGTCCGTGACTTTTGAACAAATCAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 |
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| CDS-3UTR TCA 90 bp | GGATACACCATGTGTTCACAGCTTTGTGACGGGTGTCATTACTGGTGTTTTCTTCTTTTGGGGTGTATCTaGCCACCAGCTTCACACTGT | + |
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Preference number: 4 (lower is better) Translates to: GYTMCSQLCDGCHYWCFLLLGCI*PPASHC Trigger: ACAGTGTGAAGCTGGTGGTCAGATACACCCCAAAAG...AAGAAAACACCAGTAATGACACCCGTCACAAAGCTGTGAACACATGGTGTATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR GCA 90 bp | GGATACACCATGTGTTCACAGCTTTGTGACGGGTGTCATTACTGGTGTTTTCTTACAGCTTTCTCATGGTaGTCCCCTTCCACACTCACT | + |
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Preference number: 4 (lower is better) Translates to: GYTMCSQLCDGCHYWCFLTAFSW*SPSTLT Trigger: AGTGAGTGTGGAAGGGGAGCACCATGAGAAAGCTGT...AAGAAAACACCAGTAATGACACCCGTCACAAAGCTGTGAACACATGGTGTATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR CCA 90 bp | GGATACACCATGTGTTCACAGCTTTGTGACGGGTGTCATTACTGGTGTTTTCTTCTCTTCCAGGACTTTTaGGGTGTATCTGACCACCAG | + |
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Preference number: 4 (lower is better) Translates to: GYTMCSQLCDGCHYWCFLLFQDF*GVSDHQ Trigger: CTGGTGGTCAGATACACCCCAAAAGTCCTGGAAGAG...AAGAAAACACCAGTAATGACACCCGTCACAAAGCTGTGAACACATGGTGTATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR GCA 90 bp | GCCCAGAGGAGGAAGATACTGAATTGCCTTGGTAACGAATGGATACACCATGTGATACACCTCTCGGATTaGTGTACAAAACTCACTCTG | + |
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Preference number: 4 (lower is better) Translates to: AQRRKILNCLGNEWIHHVIHLSD*CTKLTL Trigger: CAGAGTGAGTTTTGTACAGCAATCCGAGAGGTGTAT...CACATGGTGTATCCATTCGTTACCAAGGCAATTCAGTATCTTCCTCCTCTGGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CCA 90 bp | GTGATTTGTTCAAAAGTCACGGACTTTATTCTTACACTGTTTCAGTCTGCAGACCTGTTGCCTTTGCTGTaGCCCTCGCACGGAATTCAG | + |
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Preference number: 4 (lower is better) Translates to: VICSKVTDFILTLFQSADLLPLL*PSHGIQ Trigger: CTGAATTCCGTGCGAGGGCCACAGCAAAGGCAACAG...GTCTGCAGACTGAAACAGTGTAAGAATAAAGTCCGTGACTTTTGAACAAATCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CCA 90 bp | GAGGGCAGGTTACATATATCAAGTGAGGAGGAATTCATAAAACCAAGAGAGTCGTTCACTGATAGCAGCTaGTCCCCTCTTTTGAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: EGRLHISSEEEFIKPRESFTDSS*SPLLRP Trigger: AGGCCTCAAAAGAGGGGACCAGCTGCTATCAGTGAA...CGACTCTCTTGGTTTTATGAATTCCTCCTCACTTGATATATGTAACCTGCCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR TCA 90 bp | ATATCAAGTGAGGAGGAATTCATAAAACCAAGAGAGTCGCTTACCAGAGTAGTGCTTTTGGGGTGTATCTaGCCACCAGCTTCACACTGT | + |
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Preference number: 4 (lower is better) Translates to: ISSEEEFIKPRESLTRVVLLGCI*PPASHC Trigger: ACAGTGTGAAGCTGGTGGTCAGATACACCCCAAAAG...CACTACTCTGGTAAGCGACTCTCTTGGTTTTATGAATTCCTCCTCACTTGATAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CCA 90 bp | AATGAAGGGTTTGCTAATCTCCGGAGGAGCCTTAGACCAAAGATTCACTTAATCACCTTTTTGAGAGACTaGAGCTTGTGCACTGGTACT | + |
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Preference number: 4 (lower is better) Translates to: NEGFANLRRSLRPKIHLITFLRD*SLCTGT Trigger: AGTACCAGTGCACAAGCTCCAGTCTCTCAAAAAGGT...GATTAAGTGAATCTTTGGTCTAAGGCTCCTCCGGAGATTAGCAAACCCTTCATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR TCA 90 bp | GTGATTTGTTCAAAAGTCACGGACTTTATTCTTACACTGTTTCAGTCTGCAGACGTACAAAACTCACTCTaGAGCACCTTTTTGAGAGAC | + |
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Preference number: 4 (lower is better) Translates to: VICSKVTDFILTLFQSADVQNSL*STFLRD Trigger: GTCTCTCAAAAAGGTGCTTCAGAGTGAGTTTTGTAC...GTCTGCAGACTGAAACAGTGTAAGAATAAAGTCCGTGACTTTTGAACAAATCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS CCA 90 bp | CAGTCTTTGGCAGTTCAACTACCCGAGGGTGGGAGTGGCCTTCGCTaGCTGCAAAAGCTGCAACTGTTGCCTTTGCTGTGGCCCTCGCAC | + |
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Preference number: 5 (lower is better) Translates to: QSLAVQLPEGGSGLR*LQKLQLLPLLWPSH Trigger: GTGCGAGGGCCACAGCAAAGGCAACAGTTGCAGCTTTTGCAGCCAGCGAAGGCCACTCCCACCCTCGGGTAGTTGAACTGCCAAAGACTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS CCA 90 bp | TTCCTTCCCTCCCATCACATTAAAACCCAGGCCTTCATCAGTCTTTaGCAGTTCAACTACCCGAGGGTGGGAGTGGCCTTCGCTGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: FLPSHHIKTQAFISL*QFNYPRVGVAFAGC Trigger: GCAGCCAGCGAAGGCCACTCCCACCCTCGGGTAGTTGAACTGCCAAAGACTGATGAAGGCCTGGGTTTTAATGTGATGGGAGGGAAGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CAA 90 bp | TACTTCACTCCCTCAATACACTGCGAGTTTCCACTGACATGGATGGAAAAGGTCCAAAAGCTGCAACTGTaGCCTTTGCTGTGGCCCTCG | + |
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Preference number: 5 (lower is better) Translates to: YFTPSIHCEFPLTWMEKVQKLQL*PLLWPS Trigger: CGAGGGCCACAGCAAAGGCAACAGTTGCAGCTTTTG...GACCTTTTCCATCCATGTCAGTGGAAACTCGCAGTGTATTGAGGGAGTGAAGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CAA 90 bp | TCAGTCTGCAGACTGGAATACTTCACTCCCTCAATACACTGCGAGTTTCCACTGAGCTGGTCCCCTCTTTaGAGGCCTCCATGTCTTTCA | + |
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Preference number: 5 (lower is better) Translates to: SVCRLEYFTPSIHCEFPLSWSPL*RPPCLS Trigger: TGAAAGACATGGAGGCCTCAAAAGAGGGGACCAGCT...CAGTGGAAACTCGCAGTGTATTGAGGGAGTGAAGTATTCCAGTCTGCAGACTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR CAA 90 bp | CACTCCCTCAATACACTGCGAGTTTCCACTGACATGGATGGAAAAGGTCTGAGTTTGAGAGACTGGAGCTaGTGCACTGGTACTTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: HSLNTLRVSTDMDGKGLSLRDWS*CTGTSP Trigger: TGGAGAAGTACCAGTGCACAAGCTCCAGTCTCTCAA...ACTCAGACCTTTTCCATCCATGTCAGTGGAAACTCGCAGTGTATTGAGGGAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CAA 90 bp | ATATCAAGTGAGGAGGAATTCATAAAACCAAGAGAGTCGCTTACCAGAGTAGTGCTGCAACTGTTGCCTTaGCTGTGGCCCTCGCACGGA | + |
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Preference number: 5 (lower is better) Translates to: ISSEEEFIKPRESLTRVVLQLLP*LWPSHG Trigger: TCCGTGCGAGGGCCACAGCAAAGGCAACAGTTGCAG...CACTACTCTGGTAAGCGACTCTCTTGGTTTTATGAATTCCTCCTCACTTGATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CAA 90 bp | TCAGTCTGCAGACTGGAATACTTCACTCCCTCAATACACTGCGAGTTTCCACTGCTGTCCTTAGCAGCCTaGAGAAGTTCCACAGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: SVCRLEYFTPSIHCEFPLLSLAA*RSSTAF Trigger: GAAAGCTGTGGAACTTCTCAAGGCTGCTAAGGACAG...CAGTGGAAACTCGCAGTGTATTGAGGGAGTGAAGTATTCCAGTCTGCAGACTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR CAA 90 bp | GGATACACCATGTGTTCACAGCTTTGTGACGGGTGTCATTACTGGTGTTTTCTTGGCCTTCATCAGTCTTaGGCAGTTCAACTACCCGAG | + |
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Preference number: 5 (lower is better) Translates to: GYTMCSQLCDGCHYWCFLGLHQS*AVQLPE Trigger: CTCGGGTAGTTGAACTGCCAAAGACTGATGAAGGCC...AAGAAAACACCAGTAATGACACCCGTCACAAAGCTGTGAACACATGGTGTATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CAA 90 bp | GGATACACCATGTGTTCACAGCTTTGTGACGGGTGTCATTACTGGTGTTTTCTTAGCTGGTCCCCTCTTTaGAGGCCTCCATGTCTTTCA | + |
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Preference number: 5 (lower is better) Translates to: GYTMCSQLCDGCHYWCFLSWSPL*RPPCLS Trigger: TGAAAGACATGGAGGCCTCAAAAGAGGGGACCAGCT...AAGAAAACACCAGTAATGACACCCGTCACAAAGCTGTGAACACATGGTGTATCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR CAA 90 bp | ATTGCCTTGGTAACGAATGGATACACCATGTGTTCACAGCTTTGTGACGGGTGTCTGTCCTTAGCAGCCTaGAGAAGTTCCACAGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: IALVTNGYTMCSQLCDGCLSLAA*RSSTAF Trigger: GAAAGCTGTGGAACTTCTCAAGGCTGCTAAGGACAG...ACACCCGTCACAAAGCTGTGAACACATGGTGTATCCATTCGTTACCAAGGCAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS-3UTR CAA 90 bp | TTCAGTCTGCAGACTGGAATACTTCACTCCCTCAATACACTGCGAGTTTCCACTGTAGTTCGATTGCTCTaGCAACATCTCTGTCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: FSLQTGILHSLNTLRVSTVVRLL*QHLCPE Trigger: CTCTGGACAGAGATGTTGCAAGAGCAATCGAACTAC...AGTGGAAACTCGCAGTGTATTGAGGGAGTGAAGTATTCCAGTCTGCAGACTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CAA 90 bp | GATACACCATGTGTTCACAGCTTTGTGACGGGTGTCATTACTGGTGTTTTCTTTAGCTGGTCCCCTCTTTaGAGGCCTCCATGTCTTTCA | + |
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Preference number: 5 (lower is better) Translates to: DTPCVHSFVTGVITGVFFSWSPL*RPPCLS Trigger: TGAAAGACATGGAGGCCTCAAAAGAGGGGACCAGCT...AAAGAAAACACCAGTAATGACACCCGTCACAAAGCTGTGAACACATGGTGTATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000020057.16 ENSMUST00000105280.5 ENSMUST00000218031.2 |
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| CDS TCA 90 bp | ACACCTCTCGGATTGCTGTACAAAACTCACTCTGAAGCACCTTTTTaGGAGACTGGAGCTTGTGCACTGGTACTTCTCCAGATTCTTGTA | + |
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Preference number: 5 (lower is better) Translates to: TPLGLLYKTHSEAPF*ETGACALVLLQILV Trigger: TACAAGAATCTGGAGAAGTACCAGTGCACAAGCTCCAGTCTCTCAAAAAGGTGCTTCAGAGTGAGTTTTGTACAGCAATCCGAGAGGTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CAA 90 bp | GAGGGCAGGTTACATATATCAAGTGAGGAGGAATTCATAAAACCAAGAGAGTCGCTGTCCTTAGCAGCCTaGAGAAGTTCCACAGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: EGRLHISSEEEFIKPRESLSLAA*RSSTAF Trigger: GAAAGCTGTGGAACTTCTCAAGGCTGCTAAGGACAG...CGACTCTCTTGGTTTTATGAATTCCTCCTCACTTGATATATGTAACCTGCCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CAA 90 bp | ATATCAAGTGAGGAGGAATTCATAAAACCAAGAGAGTCGCTTACCAGAGTAGTGGATACACCTCTCGGATaGCTGTACAAAACTCACTCT | + |
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Preference number: 5 (lower is better) Translates to: ISSEEEFIKPRESLTRVVDTPLG*LYKTHS Trigger: AGAGTGAGTTTTGTACAGCAATCCGAGAGGTGTATC...CACTACTCTGGTAAGCGACTCTCTTGGTTTTATGAATTCCTCCTCACTTGATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CAA 90 bp | AGAAGAATGGAGGTTGTAGCTAAATCAAATTCCAATTCAGACAGCTCTGCAACACGTTTCATGCATGTATaGATACACCTCTCGGATTGC | + |
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Preference number: 5 (lower is better) Translates to: RRMEVVAKSNSNSDSSATRFMHV*IHLSDC Trigger: GCAATCCGAGAGGTGTATCAATACATGCATGAAACG...TGTTGCAGAGCTGTCTGAATTGGAATTTGATTTAGCTACAACCTCCATTCTTCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS-3UTR CAA 90 bp | TCACTTAATCCTAGCCCAGGTGATTTGTTCAAAAGTCACGGACTTTATTCTTACTTTCCAGTAGTTCGATaGCTCTTGCAACATCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: SLNPSPGDLFKSHGLYSYFPVVR*LLQHLC Trigger: ACAGAGATGTTGCAAGAGCAATCGAACTACTGGAAA...GTAAGAATAAAGTCCGTGACTTTTGAACAAATCACCTGGGCTAGGATTAAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS GCA 72 bp | TTCAACTACCCGAGGGTGGGAGTGGCCTTCGCTGGCTaGAAAAGCTGCAACTGTTGCCTTTGCTGTGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: FNYPRVGVAFAG*KSCNCCLCCGP Trigger: AGGGCCACAGCAAAGGCAACAGTTGCAGCTTTTGCAGCCAGCGAAGGCCACTCCCACCCTCGGGTAGTTGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS CCA 72 bp | GCAGTTCAACTACCCGAGGGTGGGAGTGGCCTTCGCTaGCTGCAAAAGCTGCAACTGTTGCCTTTGCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: AVQLPEGGSGLR*LQKLQLLPLLW Trigger: CCACAGCAAAGGCAACAGTTGCAGCTTTTGCAGCCAGCGAAGGCCACTCCCACCCTCGGGTAGTTGAACTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS CCA 72 bp | CCTTCATCAGTCTTTGGCAGTTCAACTACCCGAGGGTaGGAGTGGCCTTCGCTGGCTGCAAAAGCTGCAACT | + |
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Preference number: 6 (lower is better) Translates to: PSSVFGSSTTRG*EWPSLAAKAAT Trigger: AGTTGCAGCTTTTGCAGCCAGCGAAGGCCACTCCCACCCTCGGGTAGTTGAACTGCCAAAGACTGATGAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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| CDS TCA 72 bp | GGATTGCTGTACAAAACTCACTCTGAAGCACCTTTTTaGGAGACTGGAGCTTGTGCACTGGTACTTCTCCAG | + |
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Preference number: 6 (lower is better) Translates to: GLLYKTHSEAPF*ETGACALVLLQ Trigger: CTGGAGAAGTACCAGTGCACAAGCTCCAGTCTCTCAAAAAGGTGCTTCAGAGTGAGTTTTGTACAGCAATCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020057.16 |
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