Pregenerated sensors for LIN54 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000118665Ensembl transcript IDs: ENSMUST00000239512.1, ENSMUST00000239513.1, ENSMUST00000239514.1
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GCCCACATTCCCTGTTCCTGGAGCTGGTGCCAGCACAGTACCTGGTaGCAGGTTAGTGAGGTTGGGCTGGATCTGAGGCAGTGGTGTGGC | + |
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Preference number: 5 (lower is better) Translates to: AHIPCSWSWCQHSTW*QVSEVGLDLRQWCG Trigger: GCCACACCACTGCCTCAGATCCAGCCCAACCTCACTAACCTGCCACCAGGTACTGTGCTGGCACCAGCTCCAGGAACAGGGAATGTGGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 90 bp | AGTACCTGGTGGCAGGTTAGTGAGGTTGGGCTGGATCTGAGGCAGTaGTGTGGCAGGCATGATGAGCCGCTGCTGTGGCTGGCTGGTAGT | + |
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Preference number: 5 (lower is better) Translates to: STWWQVSEVGLDLRQ*CGRHDEPLLWLAGS Trigger: ACTACCAGCCAGCCACAGCAGCGGCTCATCATGCCTGCCACACCACTGCCTCAGATCCAGCCCAACCTCACTAACCTGCCACCAGGTACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS TCA 90 bp | ACTGGTTTTGCTTGCTGGAGAGGCTGTGTGTTTACACTGGGGCTCTaGCTGACTGGCTGGGCTGAGCTACTGGCTGTTGTGGCAGTAACA | + |
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Preference number: 5 (lower is better) Translates to: TGFACWRGCVFTLGL*LTGWAELLAVVAVT Trigger: TGTTACTGCCACAACAGCCAGTAGCTCAGCCCAGCCAGTCAGTCAGAGCCCCAGTGTAAACACACAGCCTCTCCAGCAAGCAAAACCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 90 bp | AACATACTGAGCTGGAAGCACTGCATAGCCCACATTCCCTGTTCCTaGAGCTGGTGCCAGCACAGTACCTGGTGGCAGGTTAGTGAGGTT | + |
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Preference number: 5 (lower is better) Translates to: NILSWKHCIAHIPCS*SWCQHSTWWQVSEV Trigger: AACCTCACTAACCTGCCACCAGGTACTGTGCTGGCACCAGCTCCAGGAACAGGGAATGTGGGCTATGCAGTGCTTCCAGCTCAGTATGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS TCA 90 bp | CTGGACATTGGGAGCAGTGGCCAGAGGGATGATGGTCTTAAACTGTaGGGTGCTCATTCCTCCCACAGTGATGGTCTGCACAGCCGATTT | + |
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Preference number: 5 (lower is better) Translates to: LDIGSSGQRDDGLKL*GAHSSHSDGLHSRF Trigger: AAATCGGCTGTGCAGACCATCACTGTGGGAGGAATGAGCACCTCACAGTTTAAGACCATCATCCCTCTGGCCACTGCTCCCAATGTCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS TCA 90 bp | GAGAGGCTGTGTGTTTACACTGGGGCTCTGACTGACTGGCTGGGCTaGGCTACTGGCTGTTGTGGCAGTAACAAGTCGGACATAATGAAA | + |
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Preference number: 5 (lower is better) Translates to: ERLCVYTGALTDWLG*ATGCCGSNKSDIMK Trigger: TTTCATTATGTCCGACTTGTTACTGCCACAACAGCCAGTAGCTCAGCCCAGCCAGTCAGTCAGAGCCCCAGTGTAAACACACAGCCTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 90 bp | AATTGGTTTTGCAAAAATCAGCTTCGTGATCACTGGACCCGAGGTTaGTGTCCGAGGCTTCTTAGCAATCTCGGCCGGCACCACCTCCAT | + |
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Preference number: 5 (lower is better) Translates to: NWFCKNQLRDHWTRG*CPRLLSNLGRHHLH Trigger: ATGGAGGTGGTGCCGGCCGAGATTGCTAAGAAGCCTCGGACACCAACCTCGGGTCCAGTGATCACGAAGCTGATTTTTGCAAAACCAATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000239514.1 |
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| CDS GCA 90 bp | ATGGTCTTAAACTGTGAGGTGCTCATTCCTCCCACAGTGATGGTCTaGACAGCCGATTTCACTGTCTTATTTGGCGACTTCAAAGGTGAG | + |
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Preference number: 5 (lower is better) Translates to: MVLNCEVLIPPTVMV*TADFTVLFGDFKGE Trigger: CTCACCTTTGAAGTCGCCAAATAAGACAGTGAAATCGGCTGTGCAGACCATCACTGTGGGAGGAATGAGCACCTCACAGTTTAAGACCAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 90 bp | GACTCTGATGGAATTATGCCATTGAATGGAAGCCTTGCCTGTGTCTaGATGCCAGATGTTCCAGTAAAATTAGAGTTGCTTGCTATAGAC | + |
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Preference number: 5 (lower is better) Translates to: DSDGIMPLNGSLACV*MPDVPVKLELLAID Trigger: GTCTATAGCAAGCAACTCTAATTTTACTGGAACATCTGGCATCCAGACACAGGCAAGGCTTCCATTCAATGGCATAATTCCATCAGAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 90 bp | GCACAGCCGATTTCACTGTCTTATTTGGCGACTTCAAAGGTGAGATaGCTATCTTATTTGGTGTCTGTGTTGTCGAATTTAAAGTTGATC | + |
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Preference number: 5 (lower is better) Translates to: AQPISLSYLATSKVR*LSYLVSVLSNLKLI Trigger: GATCAACTTTAAATTCGACAACACAGACACCAAATAAGATAGCCATCTCACCTTTGAAGTCGCCAAATAAGACAGTGAAATCGGCTGTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS GCA 90 bp | GTCTCTCATTCTCGTGCTCTAAATTGTTGTAACAATTGGTACAGTTaGAGTTGTTGCAGAATTCACCATTTGCAAAGCAATCACAGTATA | + |
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Preference number: 5 (lower is better) Translates to: VSHSRALNCCNNWYS*SCCRIHHLQSNHSI Trigger: TATACTGTGATTGCTTTGCAAATGGTGAATTCTGCAACAACTGCAACTGTACCAATTGTTACAACAATTTAGAGCACGAGAATGAGAGAC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS TCA 72 bp | GTACCTGGTGGCAGGTTAGTGAGGTTGGGCTGGATCTaGGGCAGTGGTGTGGCAGGCATGATGAGCCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: VPGGRLVRLGWI*GSGVAGMMSRC Trigger: GCAGCGGCTCATCATGCCTGCCACACCACTGCCTCAGATCCAGCCCAACCTCACTAACCTGCCACCAGGTAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 72 bp | TGGCAGGTTAGTGAGGTTGGGCTGGATCTGAGGCAGTaGTGTGGCAGGCATGATGAGCCGCTGCTGTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: WQVSEVGLDLRQ*CGRHDEPLLWL Trigger: CAGCCACAGCAGCGGCTCATCATGCCTGCCACACCACTGCCTCAGATCCAGCCCAACCTCACTAACCTGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS TCA 72 bp | GCTTGCTGGAGAGGCTGTGTGTTTACACTGGGGCTCTaGCTGACTGGCTGGGCTGAGCTACTGGCTGTTGTG | + |
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Preference number: 6 (lower is better) Translates to: ACWRGCVFTLGL*LTGWAELLAVV Trigger: CACAACAGCCAGTAGCTCAGCCCAGCCAGTCAGTCAGAGCCCCAGTGTAAACACACAGCCTCTCCAGCAAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS TCA 72 bp | AGAGCTGGGGTTGGCCTTGTAAGGAGGTCTGAGATCTaGGAGGACAGCTTGGTCTTCGCTGCTGTCTGCTGC | + |
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Preference number: 6 (lower is better) Translates to: RAGVGLVRRSEI*EDSLVFAAVCC Trigger: GCAGCAGACAGCAGCGAAGACCAAGCTGTCCTCTCAGATCTCAGACCTCCTTACAAGGCCAACCCCAGCTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS TCA 72 bp | GGGAGCAGTGGCCAGAGGGATGATGGTCTTAAACTGTaGGGTGCTCATTCCTCCCACAGTGATGGTCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: GSSGQRDDGLKL*GAHSSHSDGLH Trigger: GTGCAGACCATCACTGTGGGAGGAATGAGCACCTCACAGTTTAAGACCATCATCCCTCTGGCCACTGCTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 72 bp | TGCAAAAATCAGCTTCGTGATCACTGGACCCGAGGTTaGTGTCCGAGGCTTCTTAGCAATCTCGGCCGGCAC | + |
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Preference number: 6 (lower is better) Translates to: CKNQLRDHWTRG*CPRLLSNLGRH Trigger: GTGCCGGCCGAGATTGCTAAGAAGCCTCGGACACCAACCTCGGGTCCAGTGATCACGAAGCTGATTTTTGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000239514.1 |
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| CDS TCA 72 bp | ACTGTTGAGAGCTGGGGTTGGCCTTGTAAGGAGGTCTaGGATCTGAGAGGACAGCTTGGTCTTCGCTGCTGT | + |
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Preference number: 6 (lower is better) Translates to: TVESWGWPCKEV*DLRGQLGLRCC Trigger: ACAGCAGCGAAGACCAAGCTGTCCTCTCAGATCTCAGACCTCCTTACAAGGCCAACCCCAGCTCTCAACAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS GCA 72 bp | ACCTCTGGCCTCCCTCCAATGGTAACTACTTTAATTTaGTGCGGTGGTAACTTAGCATCTCCTGGCTGGGCC | + |
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Preference number: 6 (lower is better) Translates to: TSGLPPMVTTLI*CGGNLASPGWA Trigger: GGCCCAGCCAGGAGATGCTAAGTTACCACCGCAGCAAATTAAAGTAGTTACCATTGGAGGGAGGCCAGAGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS GCA 72 bp | AACTGTGAGGTGCTCATTCCTCCCACAGTGATGGTCTaGACAGCCGATTTCACTGTCTTATTTGGCGACTTC | + |
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Preference number: 6 (lower is better) Translates to: NCEVLIPPTVMV*TADFTVLFGDF Trigger: GAAGTCGCCAAATAAGACAGTGAAATCGGCTGTGCAGACCATCACTGTGGGAGGAATGAGCACCTCACAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 72 bp | TGCAACTTGGTTAGTGTGGTTACTGTACACTGTGATTaGTTCCGTGGAAATGGGCGTGGCTGTAGAGTCACC | + |
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Preference number: 6 (lower is better) Translates to: CNLVSVVTVHCD*FRGNGRGCRVT Trigger: GGTGACTCTACAGCCACGCCCATTTCCACGGAACCAATCACAGTGTACAGTAACCACACTAACCAAGTTGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS TCA 72 bp | AACTTGCTTAACGGCCTGAGCTTGGACAAATGGAACTaGCATCCGTACAGGGGTGGTATTAACAACCACTGG | + |
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Preference number: 6 (lower is better) Translates to: NLLNGLSLDKWN*HPYRGGINNHW Trigger: CCAGTGGTTGTTAATACCACCCCTGTACGGATGTCAGTTCCATTTGTCCAAGCTCAGGCCGTTAAGCAAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 72 bp | AGTGGTGTGGCAGGCATGATGAGCCGCTGCTGTGGCTaGCTGGTAGTTACAATTTGTGAAGTTGAATTGATT | + |
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Preference number: 6 (lower is better) Translates to: SGVAGMMSRCCG*LVVTICEVELI Trigger: AATCAATTCAACTTCACAAATTGTAACTACCAGCCAGCCACAGCAGCGGCTCATCATGCCTGCCACACCACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS GCA 72 bp | CTTTGGCTTGAAGGCTTCCGGATTTCTATCAAGGCATaGCTTGATTGCCTTTTGTCTCTCATTCTCGTGCTC | + |
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Preference number: 6 (lower is better) Translates to: LWLEGFRISIKA*LDCLLSLILVL Trigger: GAGCACGAGAATGAGAGACAAAAGGCAATCAAGGCATGCCTTGATAGAAATCCGGAAGCCTTCAAGCCAAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 72 bp | TGCAAAAATCAGCTTCGTGATCACTGGACCCGAGGTTaGTGTCCGAGGCTTCTTAGCAATCTGTACTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: CKNQLRDHWTRG*CPRLLSNLYCF Trigger: AAAACAGTACAGATTGCTAAGAAGCCTCGGACACCAACCTCGGGTCCAGTGATCACGAAGCTGATTTTTGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS TCA 72 bp | GAAAGAACCCTACCTGTGACGACGGGTGGAGATGCTTaGGTTGTCTGTCCTGTAACTGCTTTGCTATTAATT | + |
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Preference number: 6 (lower is better) Translates to: ERTLPVTTGGDA*VVCPVTALLLI Trigger: AATTAATAGCAAAGCAGTTACAGGACAGACAACTCAAGCATCTCCACCCGTCGTCACAGGTAGGGTTCTTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 ENSMUST00000239514.1 |
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| CDS TCA 72 bp | GAATTGATTGGTTTTGGAACAACTTGCTTAACGGCCTaGGCTTGGACAAATGGAACTGACATCCGTACAGGG | + |
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Preference number: 6 (lower is better) Translates to: ELIGFGTTCLTA*AWTNGTDIRTG Trigger: CCCTGTACGGATGTCAGTTCCATTTGTCCAAGCTCAGGCCGTTAAGCAAGTTGTTCCAAAACCAATCAATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CAA 72 bp | ATGGGCGTGGCTGTAGAGTCACCGGTAGAATTTATGTaGACAATTTCTTCCAGCTCTGTCTCCATGGGAATT | + |
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Preference number: 6 (lower is better) Translates to: MGVAVESPVEFM*TISSSSVSMGI Trigger: AATTCCCATGGAGACAGAGCTGGAAGAAATTGTCAACATAAATTCTACCGGTGACTCTACAGCCACGCCCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CAA 72 bp | GGCTTGAAGGCTTCCGGATTTCTATCAAGGCATGCCTaGATTGCCTTTTGTCTCTCATTCTCGTGCTCTAAA | + |
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Preference number: 6 (lower is better) Translates to: GLKASGFLSRHA*IAFCLSFSCSK Trigger: TTTAGAGCACGAGAATGAGAGACAAAAGGCAATCAAGGCATGCCTTGATAGAAATCCGGAAGCCTTCAAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS TCA 72 bp | ACTGTTTTTAACTGTTGGGTCTGTAACACAGAGGGCTaGGTTGTAGTATTAATCAGTTGGCTTCCTGGGGTC | + |
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Preference number: 6 (lower is better) Translates to: TVFNCWVCNTEG*VVVLISWLPGV Trigger: GACCCCAGGAAGCCAACTGATTAATACTACAACTCAGCCCTCTGTGTTACAGACCCAACAGTTAAAAACAGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 72 bp | ATTAATTGGTTTTGCAAAAATCAGCTTCGTGATCACTaGACCCGAGGTTGGTGTCCGAGGCTTCTTAGCAAT | + |
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Preference number: 6 (lower is better) Translates to: INWFCKNQLRDH*TRGWCPRLLSN Trigger: ATTGCTAAGAAGCCTCGGACACCAACCTCGGGTCCAGTGATCACGAAGCTGATTTTTGCAAAACCAATTAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 ENSMUST00000239514.1 |
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| CDS TCA 72 bp | AGCCGATTTCACTGTCTTATTTGGCGACTTCAAAGGTaGGATGGCTATCTTATTTGGTGTCTGTGTTGTCGA | + |
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Preference number: 6 (lower is better) Translates to: SRFHCLIWRLQR*DGYLIWCLCCR Trigger: TCGACAACACAGACACCAAATAAGATAGCCATCTCACCTTTGAAGTCGCCAAATAAGACAGTGAAATCGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 72 bp | GAATCTGCTTTAGAAACTGTGGTATTCACTGCAACTTaGTTAGTGTGGTTACTGTACACTGTGATTGGTTCC | + |
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Preference number: 6 (lower is better) Translates to: ESALETVVFTAT*LVWLLYTVIGS Trigger: GGAACCAATCACAGTGTACAGTAACCACACTAACCAAGTTGCAGTGAATACCACAGTTTCTAAAGCAGATTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CAA 90 bp | GGTAGTTGGCTATGGGGTAGTGCTAAAACAATTGGTGAACCAGACTaGCCCAAAGTTGTTAATATTAACTTCTGTCCATCTGGTTTAAGG | + |
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Preference number: 6 (lower is better) Translates to: GSWLWGSAKTIGEPD*PKVVNINFCPSGLR Trigger: CCTTAAACCAGATGGACAGAAGTTAATATTAACAACTTTGGGCAAGTCTGGTTCACCAATTGTTTTAGCACTACCCCATAGCCAACTACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CAA 90 bp | TCACTGTCTTATTTGGCGACTTCAAAGGTGAGATGGCTATCTTATTaGGTGTCTGTGTTGTCGAATTTAAAGTTGATCCAATCACACCAC | + |
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Preference number: 6 (lower is better) Translates to: SLSYLATSKVRWLSY*VSVLSNLKLIQSHH Trigger: GTGGTGTGATTGGATCAACTTTAAATTCGACAACACAGACACCAAATAAGATAGCCATCTCACCTTTGAAGTCGCCAAATAAGACAGTGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CAA 90 bp | TTGGCGACTTCAAAGGTGAGATGGCTATCTTATTTGGTGTCTGTGTaGTCGAATTTAAAGTTGATCCAATCACACCACTTTCTGATATTG | + |
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Preference number: 6 (lower is better) Translates to: LATSKVRWLSYLVSV*SNLKLIQSHHFLIL Trigger: CAATATCAGAAAGTGGTGTGATTGGATCAACTTTAAATTCGACAACACAGACACCAAATAAGATAGCCATCTCACCTTTGAAGTCGCCAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 ENSMUST00000239514.1 |
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| CDS CAA 90 bp | AGTTGTTCTTATTTGGCGACTTCAAAGGTGAGATGGCTATCTTATTaGGTGTCTGTGTTGTCGAATTTAAAGTTGATCCAATCACACCAC | + |
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Preference number: 6 (lower is better) Translates to: SCSYLATSKVRWLSY*VSVLSNLKLIQSHH Trigger: GTGGTGTGATTGGATCAACTTTAAATTCGACAACACAGACACCAAATAAGATAGCCATCTCACCTTTGAAGTCGCCAAATAAGAACAACT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000239514.1 |
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| CDS GCA 72 bp | TATGGGGTAGTGCTAAAACAATTGGTGAACCAGACTTaGCCAAAGTTGTTAATATTAACTTCTGTCCATCTG | + |
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Preference number: 6 (lower is better) Translates to: YGVVLKQLVNQT*PKLLILTSVHL Trigger: CAGATGGACAGAAGTTAATATTAACAACTTTGGGCAAGTCTGGTTCACCAATTGTTTTAGCACTACCCCATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CAA 72 bp | CTATGGGGTAGTGCTAAAACAATTGGTGAACCAGACTaGCCCAAAGTTGTTAATATTAACTTCTGTCCATCT | + |
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Preference number: 6 (lower is better) Translates to: LWGSAKTIGEPD*PKVVNINFCPS Trigger: AGATGGACAGAAGTTAATATTAACAACTTTGGGCAAGTCTGGTTCACCAATTGTTTTAGCACTACCCCATAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS GCA 72 bp | TCTCGTGCTCTAAATTGTTGTAACAATTGGTACAGTTaGAGTTGTTGCAGAATTCACCATTTGCAAAGCAAT | + |
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Preference number: 6 (lower is better) Translates to: SRALNCCNNWYS*SCCRIHHLQSN Trigger: ATTGCTTTGCAAATGGTGAATTCTGCAACAACTGCAACTGTACCAATTGTTACAACAATTTAGAGCACGAGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CCA 72 bp | ATTTCACTGTCTTATTTGGCGACTTCAAAGGTGAGATaGCTATCTTATTTGGTGTCTGTGTTGTCGAATTTA | + |
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Preference number: 6 (lower is better) Translates to: ISLSYLATSKVR*LSYLVSVLSNL Trigger: TAAATTCGACAACACAGACACCAAATAAGATAGCCATCTCACCTTTGAAGTCGCCAAATAAGACAGTGAAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 |
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| CDS CAA 72 bp | TCAAAGGTGAGATGGCTATCTTATTTGGTGTCTGTGTaGTCGAATTTAAAGTTGATCCAATCACACCACTTT | + |
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Preference number: 6 (lower is better) Translates to: SKVRWLSYLVSV*SNLKLIQSHHF Trigger: AAAGTGGTGTGATTGGATCAACTTTAAATTCGACAACACAGACACCAAATAAGATAGCCATCTCACCTTTGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 ENSMUST00000239514.1 |
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| CDS CAA 72 bp | TATTTGGCGACTTCAAAGGTGAGATGGCTATCTTATTaGGTGTCTGTGTTGTCGAATTTAAAGTTGATCCAA | + |
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Preference number: 6 (lower is better) Translates to: YLATSKVRWLSY*VSVLSNLKLIQ Trigger: TTGGATCAACTTTAAATTCGACAACACAGACACCAAATAAGATAGCCATCTCACCTTTGAAGTCGCCAAATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000239512.1 ENSMUST00000239513.1 ENSMUST00000239514.1 |
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