Pregenerated sensors for LIN52 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000085793Ensembl transcript IDs: ENSMUST00000137170.3, ENSMUST00000137170.4, ENSMUST00000221033.2
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACTGCAAGAGGTCCTCTTGTCTGGACTCAGACCTGCGAGTGGGACTaGAGGTGGGGACGGGACAGTCCTGAGAGCAGGAGTGTCGTTGGA | + |
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Preference number: 1 (lower is better) Translates to: TARGPLVWTQTCEWD*RWGRDSPESRSVVG Trigger: TCCAACGACACTCCTGCTCTCAGGACTGTCCCGTCCCCACCTCCAGTCCCACTCGCAGGTCTGAGTCCAGACAAGAGGACCTCTTGCAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 90 bp | AAAGTCACTGCAAGAGGTCCTCTTGTCTGGACTCAGACCTGCGAGTaGGACTGGAGGTGGGGACGGGACAGTCCTGAGAGCAGGAGTGTC | + |
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Preference number: 1 (lower is better) Translates to: KVTARGPLVWTQTCE*DWRWGRDSPESRSV Trigger: GACACTCCTGCTCTCAGGACTGTCCCGTCCCCACCTCCAGTCCCACTCGCAGGTCTGAGTCCAGACAAGAGGACCTCTTGCAGTGACTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 90 bp | TCTACAGCTAATCCCAGGAAAGTCACTGCAAGAGGTCCTCTTGTCTaGACTCAGACCTGCGAGTGGGACTGGAGGTGGGGACGGGACAGT | + |
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Preference number: 1 (lower is better) Translates to: STANPRKVTARGPLV*TQTCEWDWRWGRDS Trigger: ACTGTCCCGTCCCCACCTCCAGTCCCACTCGCAGGTCTGAGTCCAGACAAGAGGACCTCTTGCAGTGACTTTCCTGGGATTAGCTGTAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 90 bp | GGCAGTCCTGAAGCTCAGCCTCCAGGCTTTTCCCAAGAGAGCACGTaGTGGGCATCAGGGTCGTATTTAGAAGGAAGCTTGGTTACAGTC | + |
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Preference number: 1 (lower is better) Translates to: GSPEAQPPGFSQEST*WASGSYLEGSLVTV Trigger: GACTGTAACCAAGCTTCCTTCTAAATACGACCCTGATGCCCACCACGTGCTCTCTTGGGAAAAGCCTGGAGGCTGAGCTTCAGGACTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 90 bp | ACCTTCTTCCTGGTCTGGAGGTCTAGGATTCAAAGTGGCACAGCATaGGCCGTTCACTCTACAGCTAATCCCAGGAAAGTCACTGCAAGA | + |
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Preference number: 1 (lower is better) Translates to: TFFLVWRSRIQSGTA*AVHSTANPRKVTAR Trigger: TCTTGCAGTGACTTTCCTGGGATTAGCTGTAGAGTGAACGGCCCATGCTGTGCCACTTTGAATCCTAGACCTCCAGACCAGGAAGAAGGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR TCA 90 bp | AAGGAACTCTACCATCCTGGGGCTCCTGGAAAATACCTTTCAGAATaGCAGGACCTCTGTGTTACCAATAGCCAGAGCTACGAAGCCGAC | + |
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Preference number: 1 (lower is better) Translates to: KELYHPGAPGKYLSE*QDLCVTNSQSYEAD Trigger: GTCGGCTTCGTAGCTCTGGCTATTGGTAACACAGAGGTCCTGTCATTCTGAAAGGTATTTTCCAGGAGCCCCAGGATGGTAGAGTTCCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 90 bp | ACAAATATAACAGACTACCCAGAGTTCCTTCTGTTACCTTCTTCCTaGTCTGGAGGTCTAGGATTCAAAGTGGCACAGCATGGGCCGTTC | + |
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Preference number: 1 (lower is better) Translates to: TNITDYPEFLLLPSS*SGGLGFKVAQHGPF Trigger: GAACGGCCCATGCTGTGCCACTTTGAATCCTAGACCTCCAGACCAGGAAGAAGGTAACAGAAGGAACTCTGGGTAGTCTGTTATATTTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR TCA 90 bp | TCACAGGTCAGGATGCAGAGTCTGGTCCAGAACATAGTTGGTCTCTaGCGTCCTCATCATGAATGCTTAAGAGATCAAGTACAACGCAAC | + |
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Preference number: 1 (lower is better) Translates to: SQVRMQSLVQNIVGL*RPHHECLRDQVQRN Trigger: GTTGCGTTGTACTTGATCTCTTAAGCATTCATGATGAGGACGTCAGAGACCAACTATGTTCTGGACCAGACTCTGCATCCTGACCTGTGA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR TCA 90 bp | GCAGAGTCTGGTCCAGAACATAGTTGGTCTCTGACGTCCTCATCATaGATGCTTAAGAGATCAAGTACAACGCAACAGAACCCATTCAAC | + |
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Preference number: 1 (lower is better) Translates to: AESGPEHSWSLTSSS*MLKRSSTTQQNPFN Trigger: GTTGAATGGGTTCTGTTGCGTTGTACTTGATCTCTTAAGCATTCATGATGAGGACGTCAGAGACCAACTATGTTCTGGACCAGACTCTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 90 bp | TCTAGCATTAAACACAAATGTCAAAAACAGTCAAGGGACCTGCTGTaGACCCCAAGAGTACTGTGCCCTAACAGAGACAAGACCACAAAC | + |
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Preference number: 1 (lower is better) Translates to: SSIKHKCQKQSRDLL*TPRVLCPNRDKTTN Trigger: GTTTGTGGTCTTGTCTCTGTTAGGGCACAGTACTCTTGGGGTCCACAGCAGGTCCCTTGACTGTTTTTGACATTTGTGTTTAATGCTAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR GCA 90 bp | TCAATTCTAGCATTAAACACAAATGTCAAAAACAGTCAAGGGACCTaGTGTGGACCCCAAGAGTACTGTGCCCTAACAGAGACAAGACCA | + |
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Preference number: 1 (lower is better) Translates to: SILALNTNVKNSQGT*CGPQEYCALTETRP Trigger: TGGTCTTGTCTCTGTTAGGGCACAGTACTCTTGGGGTCCACAGCAGGTCCCTTGACTGTTTTTGACATTTGTGTTTAATGCTAGAATTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 90 bp | GTCATCAACTCTCAAAAACAGAGTGAAGAAGGACAACTGACATTATaGCATTGTTCCCACCATGAGTACACACTCACTTTAACTGCATTC | + |
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Preference number: 1 (lower is better) Translates to: VINSQKQSEEGQLTL*HCSHHEYTLTLTAF Trigger: GAATGCAGTTAAAGTGAGTGTGTACTCATGGTGGGAACAATGCCATAATGTCAGTTGTCCTTCTTCACTCTGTTTTTGAGAGTTGATGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR CCA 90 bp | TGCAAGAGGTCCTCTTGTCTGGACTCAGACCTGCGAGTGGGACTGGAGGTGGGGTCCCAAGAGAGCACGTaGTGGGCATCAGGGTCGTAT | + |
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Preference number: 2 (lower is better) Translates to: CKRSSCLDSDLRVGLEVGSQEST*WASGSY Trigger: ATACGACCCTGATGCCCACCACGTGCTCTCTTGGGA...CCCCACCTCCAGTCCCACTCGCAGGTCTGAGTCCAGACAAGAGGACCTCTTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CAA 90 bp | TTCACTCTACAGCTAATCCCAGGAAAGTCACTGCAAGAGGTCCTCTaGTCTGGACTCAGACCTGCGAGTGGGACTGGAGGTGGGGACGGG | + |
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Preference number: 2 (lower is better) Translates to: FTLQLIPGKSLQEVL*SGLRPASGTGGGDG Trigger: CCCGTCCCCACCTCCAGTCCCACTCGCAGGTCTGAGTCCAGACAAGAGGACCTCTTGCAGTGACTTTCCTGGGATTAGCTGTAGAGTGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR TCA 90 bp | TCAAGGGACCTGCTGTGGACCCCAAGAGTACTGTGCCCTAACAGAGACAAGACCCATCTGATAAGCGGCTaGGAGGAGGAAGGAGGGGAC | + |
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Preference number: 2 (lower is better) Translates to: SRDLLWTPRVLCPNRDKTHLISG*EEEGGD Trigger: GTCCCCTCCTTCCTCCTCTCAGCCGCTTATCAGATG...GGTCTTGTCTCTGTTAGGGCACAGTACTCTTGGGGTCCACAGCAGGTCCCTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR GCA 90 bp | CTGCAAGAGGTCCTCTTGTCTGGACTCAGACCTGCGAGTGGGACTGGAGGTGGGGTTCACAGGTCAGGATaGAGAGTCTGGTCCAGAACA | + |
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Preference number: 2 (lower is better) Translates to: LQEVLLSGLRPASGTGGGVHRSG*RVWSRT Trigger: TGTTCTGGACCAGACTCTGCATCCTGACCTGTGAAC...CCCACCTCCAGTCCCACTCGCAGGTCTGAGTCCAGACAAGAGGACCTCTTGCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CAA 90 bp | TGGACCCCAAGAGTACTGTGCCCTAACAGAGACAAGACCACAAACTaGACCACACTTTTCCTGTGTCCACACTCCCAGTGGACGATGGCC | + |
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Preference number: 2 (lower is better) Translates to: WTPRVLCPNRDKTTN*TTLFLCPHSQWTMA Trigger: GGCCATCGTCCACTGGGAGTGTGGACACAGGAAAAGTGTGGTCAAGTTTGTGGTCTTGTCTCTGTTAGGGCACAGTACTCTTGGGGTCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR TCA 90 bp | CGGCTGAGAGGAGGAAGGAGGGGACAAATGCCACTACCACTGGCTAGCACACCACCAACAAGTCACTACTaGCTTTGCCATTACAGAATC | + |
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Preference number: 2 (lower is better) Translates to: RLRGGRRGQMPLPLASTPPTSHY*LCHYRI Trigger: GATTCTGTAATGGCAAAGTCAGTAGTGACTTGTTGG...TGGTGTGCTAGCCAGTGGTAGTGGCATTTGTCCCCTCCTTCCTCCTCTCAGCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR CCA 90 bp | AGACACTTTCATGGGGTGTGTTCTTATCACATAAGCAAAGCATCTGATAAGCGGGAGTGGGACTGGAGGTaGGGACGGGACAGTCCTGAG | + |
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Preference number: 2 (lower is better) Translates to: RHFHGVCSYHISKASDKREWDWR*GRDSPE Trigger: CTCAGGACTGTCCCGTCCCCACCTCCAGTCCCACTC...CCGCTTATCAGATGCTTTGCTTATGTGATAAGAACACACCCCATGAAAGTGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR CCA 90 bp | GTCCACACTCCCAGTGGACGATGGCCACAGAGCTTTTCTTTCTACAATGTTCAAAGAGGTCCTCTTGTCTaGACTCAGACCTGCGAGTGG | + |
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Preference number: 2 (lower is better) Translates to: VHTPSGRWPQSFSFYNVQRGPLV*TQTCEW Trigger: CCACTCGCAGGTCTGAGTCCAGACAAGAGGACCTCT...TTGAACATTGTAGAAAGAAAAGCTCTGTGGCCATCGTCCACTGGGAGTGTGGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR CCA 90 bp | TTCACAGGTCAGGATGCAGAGTCTGGTCCAGAACATAGTTGGTCTCTGACGTCCCCATCCTGGGGCTCCTaGAAAATACCTTTCAGAATG | + |
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Preference number: 2 (lower is better) Translates to: FTGQDAESGPEHSWSLTSPSWGS*KIPFRM Trigger: CATTCTGAAAGGTATTTTCCAGGAGCCCCAGGATGG...GGACGTCAGAGACCAACTATGTTCTGGACCAGACTCTGCATCCTGACCTGTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR GCA 90 bp | TCCCTCTTAATCATTGCAGACATCCATCAGGAGACCGTCTTTCCTTCAACTGTAAGCACCTCCATCAGGTaGATCTTTCTTTTGGCGCGC | + |
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Preference number: 2 (lower is better) Translates to: SLLIIADIHQETVFPSTVSTSIR*IFLLAR Trigger: GCGCGCCAAAAGAAAGATGCACCTGATGGAGGTGCT...TACAGTTGAAGGAAAGACGGTCTCCTGATGGATGTCTGCAATGATTAAGAGGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| 3UTR CAA 90 bp | GTACAACGCAACAGAACCCATTCAACCAACAAGTCACTACTGACTTaGCCATTACAGAATCAAAGGAACTCTACCATCCTGGGGCTCCTG | + |
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Preference number: 2 (lower is better) Translates to: VQRNRTHSTNKSLLT*PLQNQRNSTILGLL Trigger: CAGGAGCCCCAGGATGGTAGAGTTCCTTTGATTCTGTAATGGCAAAGTCAGTAGTGACTTGTTGGTTGAATGGGTTCTGTTGCGTTGTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR CCA 90 bp | GTCCACACTCCCAGTGGACGATGGCCACAGAGCTTTTCTTTCTACAATGTTCAAAACAGCAATGCTCCTTaGTTACAACAATCTCTCCTC | + |
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Preference number: 2 (lower is better) Translates to: VHTPSGRWPQSFSFYNVQNSNAP*LQQSLL Trigger: GAGGAGAGATTGTTGTAACCAAGGAGCATTGCTGTT...TTGAACATTGTAGAAAGAAAAGCTCTGTGGCCATCGTCCACTGGGAGTGTGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR TCA 90 bp | AAGTCACTACTGACTTTGCCATTACAGAATCAAAGGAACTCTACCATCCTGGGGAAATACCTTTCAGAATaGCAGGACCTCTGTGTTACC | + |
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Preference number: 2 (lower is better) Translates to: KSLLTLPLQNQRNSTILGKYLSE*QDLCVT Trigger: GGTAACACAGAGGTCCTGTCATTCTGAAAGGTATTT...CCCCAGGATGGTAGAGTTCCTTTGATTCTGTAATGGCAAAGTCAGTAGTGACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR CCA 90 bp | AACTCTGAAAAGTGCCTGATGTCATCAACTCTCAAAAACAGAGTGAAGAAGGACCTGTTACCTTCTTCCTaGTCTGGAGGTCTAGGATTC | + |
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Preference number: 2 (lower is better) Translates to: NSEKCLMSSTLKNRVKKDLLPSS*SGGLGF Trigger: GAATCCTAGACCTCCAGACCAGGAAGAAGGTAACAG...GTCCTTCTTCACTCTGTTTTTGAGAGTTGATGACATCAGGCACTTTTCAGAGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR GCA 90 bp | AACTCTGAAAAGTGCCTGATGTCATCAACTCTCAAAAACAGAGTGAAGAAGGACAATGTTCAAGGAACCTaGTGTACTCTTCAAAATGTG | + |
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Preference number: 2 (lower is better) Translates to: NSEKCLMSSTLKNRVKKDNVQGT*CTLQNV Trigger: CACATTTTGAAGAGTACAGCAGGTTCCTTGAACATT...GTCCTTCTTCACTCTGTTTTTGAGAGTTGATGACATCAGGCACTTTTCAGAGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 72 bp | GGTCCTCTTGTCTGGACTCAGACCTGCGAGTGGGACTaGAGGTGGGGACGGGACAGTCCTGAGAGCAGGAGT | + |
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Preference number: 3 (lower is better) Translates to: GPLVWTQTCEWD*RWGRDSPESRS Trigger: ACTCCTGCTCTCAGGACTGTCCCGTCCCCACCTCCAGTCCCACTCGCAGGTCTGAGTCCAGACAAGAGGACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 72 bp | GCAAGAGGTCCTCTTGTCTGGACTCAGACCTGCGAGTaGGACTGGAGGTGGGGACGGGACAGTCCTGAGAGC | + |
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Preference number: 3 (lower is better) Translates to: ARGPLVWTQTCE*DWRWGRDSPES Trigger: GCTCTCAGGACTGTCCCGTCCCCACCTCCAGTCCCACTCGCAGGTCTGAGTCCAGACAAGAGGACCTCTTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 72 bp | CTTGTCTGGACTCAGACCTGCGAGTGGGACTGGAGGTaGGGACGGGACAGTCCTGAGAGCAGGAGTGTCGTT | + |
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Preference number: 3 (lower is better) Translates to: LVWTQTCEWDWR*GRDSPESRSVV Trigger: AACGACACTCCTGCTCTCAGGACTGTCCCGTCCCCACCTCCAGTCCCACTCGCAGGTCTGAGTCCAGACAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 72 bp | GCTCAGCCTCCAGGCTTTTCCCAAGAGAGCACGTGGTaGGCATCAGGGTCGTATTTAGAAGGAAGCTTGGTT | + |
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Preference number: 3 (lower is better) Translates to: AQPPGFSQESTW*ASGSYLEGSLV Trigger: AACCAAGCTTCCTTCTAAATACGACCCTGATGCCCACCACGTGCTCTCTTGGGAAAAGCCTGGAGGCTGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 72 bp | GAAGCTCAGCCTCCAGGCTTTTCCCAAGAGAGCACGTaGTGGGCATCAGGGTCGTATTTAGAAGGAAGCTTG | + |
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Preference number: 3 (lower is better) Translates to: EAQPPGFSQEST*WASGSYLEGSL Trigger: CAAGCTTCCTTCTAAATACGACCCTGATGCCCACCACGTGCTCTCTTGGGAAAAGCCTGGAGGCTGAGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 72 bp | CTGGTCTGGAGGTCTAGGATTCAAAGTGGCACAGCATaGGCCGTTCACTCTACAGCTAATCCCAGGAAAGTC | + |
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Preference number: 3 (lower is better) Translates to: LVWRSRIQSGTA*AVHSTANPRKV Trigger: GACTTTCCTGGGATTAGCTGTAGAGTGAACGGCCCATGCTGTGCCACTTTGAATCCTAGACCTCCAGACCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR TCA 72 bp | GAGTACTGTGCCCTAACAGAGACAAGACCACAAACTTaGCCACACTTTTCCTGTGTCCACACTCCCAGTGGA | + |
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Preference number: 3 (lower is better) Translates to: EYCALTETRPQT*PHFSCVHTPSG Trigger: TCCACTGGGAGTGTGGACACAGGAAAAGTGTGGTCAAGTTTGTGGTCTTGTCTCTGTTAGGGCACAGTACTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR TCA 72 bp | TACCATCCTGGGGCTCCTGGAAAATACCTTTCAGAATaGCAGGACCTCTGTGTTACCAATAGCCAGAGCTAC | + |
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Preference number: 3 (lower is better) Translates to: YHPGAPGKYLSE*QDLCVTNSQSY Trigger: GTAGCTCTGGCTATTGGTAACACAGAGGTCCTGTCATTCTGAAAGGTATTTTCCAGGAGCCCCAGGATGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 72 bp | ACAGACTACCCAGAGTTCCTTCTGTTACCTTCTTCCTaGTCTGGAGGTCTAGGATTCAAAGTGGCACAGCAT | + |
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Preference number: 3 (lower is better) Translates to: TDYPEFLLLPSS*SGGLGFKVAQH Trigger: ATGCTGTGCCACTTTGAATCCTAGACCTCCAGACCAGGAAGAAGGTAACAGAAGGAACTCTGGGTAGTCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 72 bp | CCACACTTTTCCTGTGTCCACACTCCCAGTGGACGATaGCCACAGAGCTTTTCTTTCTACAATGTTCAAGGA | + |
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Preference number: 3 (lower is better) Translates to: PHFSCVHTPSGR*PQSFSFYNVQG Trigger: TCCTTGAACATTGTAGAAAGAAAAGCTCTGTGGCCATCGTCCACTGGGAGTGTGGACACAGGAAAAGTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR GCA 72 bp | GCATTAAACACAAATGTCAAAAACAGTCAAGGGACCTaGTGTGGACCCCAAGAGTACTGTGCCCTAACAGAG | + |
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Preference number: 3 (lower is better) Translates to: ALNTNVKNSQGT*CGPQEYCALTE Trigger: CTCTGTTAGGGCACAGTACTCTTGGGGTCCACAGCAGGTCCCTTGACTGTTTTTGACATTTGTGTTTAATGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR GCA 72 bp | AGGGAAAGGGTACCAGAAGCATTCCCTCTTAATCATTaGAGACATCCATCAGGAGACCGTCTTTCCTTCAAC | + |
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Preference number: 3 (lower is better) Translates to: RERVPEAFPLNH*RHPSGDRLSFN Trigger: GTTGAAGGAAAGACGGTCTCCTGATGGATGTCTGCAATGATTAAGAGGGAATGCTTCTGGTACCCTTTCCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| 3UTR CCA 72 bp | AACTTGACCACACTTTTCCTGTGTCCACACTCCCAGTaGACGATGGCCACAGAGCTTTTCTTTCTACAATGT | + |
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Preference number: 3 (lower is better) Translates to: NLTTLFLCPHSQ*TMATELFFLQC Trigger: ACATTGTAGAAAGAAAAGCTCTGTGGCCATCGTCCACTGGGAGTGTGGACACAGGAAAAGTGTGGTCAAGTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 72 bp | TACAGAATCAAAGGAACTCTACCATCCTGGGGCTCCTaGAAAATACCTTTCAGAATGACAGGACCTCTGTGT | + |
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Preference number: 3 (lower is better) Translates to: YRIKGTLPSWGS*KIPFRMTGPLC Trigger: ACACAGAGGTCCTGTCATTCTGAAAGGTATTTTCCAGGAGCCCCAGGATGGTAGAGTTCCTTTGATTCTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR TCA 72 bp | GGTCCAGAACATAGTTGGTCTCTGACGTCCTCATCATaGATGCTTAAGAGATCAAGTACAACGCAACAGAAC | + |
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Preference number: 3 (lower is better) Translates to: GPEHSWSLTSSS*MLKRSSTTQQN Trigger: GTTCTGTTGCGTTGTACTTGATCTCTTAAGCATTCATGATGAGGACGTCAGAGACCAACTATGTTCTGGACC 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR TCA 72 bp | AGGATGCAGAGTCTGGTCCAGAACATAGTTGGTCTCTaGCGTCCTCATCATGAATGCTTAAGAGATCAAGTA | + |
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Preference number: 3 (lower is better) Translates to: RMQSLVQNIVGL*RPHHECLRDQV Trigger: TACTTGATCTCTTAAGCATTCATGATGAGGACGTCAGAGACCAACTATGTTCTGGACCAGACTCTGCATCCT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 72 bp | CTTTGCCATTACAGAATCAAAGGAACTCTACCATCCTaGGGCTCCTGGAAAATACCTTTCAGAATGACAGGA | + |
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Preference number: 3 (lower is better) Translates to: LCHYRIKGTLPS*GSWKIPFRMTG Trigger: TCCTGTCATTCTGAAAGGTATTTTCCAGGAGCCCCAGGATGGTAGAGTTCCTTTGATTCTGTAATGGCAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR TCA 72 bp | AACGCAACAGAACCCATTCAACCAACAAGTCACTACTaGCTTTGCCATTACAGAATCAAAGGAACTCTACCA | + |
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Preference number: 3 (lower is better) Translates to: NATEPIQPTSHY*LCHYRIKGTLP Trigger: TGGTAGAGTTCCTTTGATTCTGTAATGGCAAAGTCAGTAGTGACTTGTTGGTTGAATGGGTTCTGTTGCGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR-3UTR CAA 90 bp | CCTGATGTCATCAACTCTCAAAAACAGAGTGAAGAAGGACAACTGACATTATGGCAACAATCTCTCCTCTaGATACCGAATATCCTCAGA | + |
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Preference number: 3 (lower is better) Translates to: PDVINSQKQSEEGQLTLWQQSLL*IPNILR Trigger: TCTGAGGATATTCGGTATCAAGAGGAGAGATTGTTG...CCATAATGTCAGTTGTCCTTCTTCACTCTGTTTTTGAGAGTTGATGACATCAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CCA 72 bp | TCTCAAAAACAGAGTGAAGAAGGACAACTGACATTATaGCATTGTTCCCACCATGAGTACACACTCACTTTA | + |
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Preference number: 3 (lower is better) Translates to: SQKQSEEGQLTL*HCSHHEYTLTL Trigger: TAAAGTGAGTGTGTACTCATGGTGGGAACAATGCCATAATGTCAGTTGTCCTTCTTCACTCTGTTTTTGAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| CDS-3UTR CCA 90 bp | GCCCGAGCCCTTCACGGGCATCCGAGGGAAAGGGTACCAGAAGCATTCCCTCTTAGGGCTGGAAGCATCTaGAAGAACACTCATCCAGCC | + |
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Preference number: 4 (lower is better) Translates to: ARALHGHPRERVPEAFPLRAGSI*KNTHPA Trigger: GGCTGGATGAGTGTTCTTCCAGATGCTTCCAGCCCT...AAGAGGGAATGCTTCTGGTACCCTTTCCCTCGGATGCCCGTGAAGGGCTCGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| 3UTR CAA 72 bp | CAGCTAATCCCAGGAAAGTCACTGCAAGAGGTCCTCTaGTCTGGACTCAGACCTGCGAGTGGGACTGGAGGT | + |
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Preference number: 4 (lower is better) Translates to: QLIPGKSLQEVL*SGLRPASGTGG Trigger: ACCTCCAGTCCCACTCGCAGGTCTGAGTCCAGACAAGAGGACCTCTTGCAGTGACTTTCCTGGGATTAGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CAA 72 bp | CTACCACTGGCTAGCACACCAGTCAATCAGGCTTCCTaGTCTTCAGTCATGTGGGGACTCTCACAACCGTGC | + |
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Preference number: 4 (lower is better) Translates to: LPLASTPVNQAS*SSVMWGLSQPC Trigger: GCACGGTTGTGAGAGTCCCCACATGACTGAAGACAAGGAAGCCTGATTGACTGGTGTGCTAGCCAGTGGTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CAA 72 bp | ACGTGGTGGGCATCAGGGTCGTATTTAGAAGGAAGCTaGGTTACAGTCTTCAGGACACCAGTCCATGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: TWWASGSYLEGS*VTVFRTPVHEQ Trigger: CTGCTCATGGACTGGTGTCCTGAAGACTGTAACCAAGCTTCCTTCTAAATACGACCCTGATGCCCACCACGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| 3UTR CAA 72 bp | AACAGCAATGCTCCTTGGTTACAACAATCTCTCCTCTaGATACCGAATATCCTCAGAGGCGCAGGGTGCCGG | + |
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Preference number: 4 (lower is better) Translates to: NSNAPWLQQSLL*IPNILRGAGCR Trigger: CCGGCACCCTGCGCCTCTGAGGATATTCGGTATCAAGAGGAGAGATTGTTGTAACCAAGGAGCATTGCTGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| CDS-3UTR CCA 90 bp | ATCCGAGGGAAAGGGTACCAGAAGCATTCCCTCTTAATCATTGCAGACATCCATCAAACCAGCCGGGTGTaGACTGCTGATGGCAATCTG | + |
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Preference number: 4 (lower is better) Translates to: IRGKGYQKHSLLIIADIHQTSRV*TADGNL Trigger: CAGATTGCCATCAGCAGTCCACACCCGGCTGGTTTG...ATGGATGTCTGCAATGATTAAGAGGGAATGCTTCTGGTACCCTTTCCCTCGGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| 3UTR CAA 72 bp | AGAGTACTGTGCCCTAACAGAGACAAGACCACAAACTaGACCACACTTTTCCTGTGTCCACACTCCCAGTGG | + |
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Preference number: 4 (lower is better) Translates to: RVLCPNRDKTTN*TTLFLCPHSQW Trigger: CCACTGGGAGTGTGGACACAGGAAAAGTGTGGTCAAGTTTGTGGTCTTGTCTCTGTTAGGGCACAGTACTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| CDS-3UTR TCA 90 bp | ATCCATCAGGAGACCGTCTTTCCTTCAACTGTATGTCGGTTAAAGAAAGCACCTCTGATGGCAATCTGCTaGGGGCTGGAAGCATCTGGA | + |
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Preference number: 4 (lower is better) Translates to: IHQETVFPSTVCRLKKAPLMAIC*GLEASG Trigger: TCCAGATGCTTCCAGCCCTCAGCAGATTGCCATCAG...AGGTGCTTTCTTTAACCGACATACAGTTGAAGGAAAGACGGTCTCCTGATGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| CDS-3UTR GCA 90 bp | GAAAGGGTACCAGAAGCATTCCCTCTTAATCATTGCAGACATCCATCAGGAGACACTTTTGAAAGAAGCTaGAAATTCAGCGACACCTGG | + |
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Preference number: 4 (lower is better) Translates to: ERVPEAFPLNHCRHPSGDTFERS*KFSDTW Trigger: CCAGGTGTCGCTGAATTTGCAGCTTCTTTCAAAAGT...GTCTCCTGATGGATGTCTGCAATGATTAAGAGGGAATGCTTCTGGTACCCTTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| 3UTR CAA 72 bp | AACAGAACCCATTCAACCAACAAGTCACTACTGACTTaGCCATTACAGAATCAAAGGAACTCTACCATCCTG | + |
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Preference number: 4 (lower is better) Translates to: NRTHSTNKSLLT*PLQNQRNSTIL Trigger: CAGGATGGTAGAGTTCCTTTGATTCTGTAATGGCAAAGTCAGTAGTGACTTGTTGGTTGAATGGGTTCTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000137170.3 |
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| CDS TCA 90 bp | GGGAGGTGCAAACCAGCCGGGTGTGGACTGCTGATGGCAATCTGCTaGGGGCTGGAAGCATCTGGAAGAACACTCATCCAGCCCCAGCTG | + |
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Preference number: 5 (lower is better) Translates to: GRCKPAGCGLLMAIC*GLEASGRTLIQPQL Trigger: CAGCTGGGGCTGGATGAGTGTTCTTCCAGATGCTTCCAGCCCTCAGCAGATTGCCATCAGCAGTCCACACCCGGCTGGTTTGCACCTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| CDS CCA 90 bp | CGGGTGTGGACTGCTGATGGCAATCTGCTGAGGGCTGGAAGCATCTaGAAGAACACTCATCCAGCCCCAGCTGGTAGGCCAGGTTCTGTA | + |
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Preference number: 5 (lower is better) Translates to: RVWTADGNLLRAGSI*KNTHPAPAGRPGSV Trigger: TACAGAACCTGGCCTACCAGCTGGGGCTGGATGAGTGTTCTTCCAGATGCTTCCAGCCCTCAGCAGATTGCCATCAGCAGTCCACACCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| CDS TCA 90 bp | CAAAGTCCAGCAGAGGGAGGTGCAAACCAGCCGGGTGTGGACTGCTaGTGGCAATCTGCTGAGGGCTGGAAGCATCTGGAAGAACACTCA | + |
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Preference number: 5 (lower is better) Translates to: QSPAEGGANQPGVDC*WQSAEGWKHLEEHS Trigger: TGAGTGTTCTTCCAGATGCTTCCAGCCCTCAGCAGATTGCCATCAGCAGTCCACACCCGGCTGGTTTGCACCTCCCTCTGCTGGACTTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| CDS-3UTR CAA 90 bp | ATCATTGCAGACATCCATCAGGAGACCGTCTTTCCTTCAACTGTATGTCGGTTACTTGTGATGGGACTTTaGAAAGAAGCTGCAAATTCA | + |
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Preference number: 5 (lower is better) Translates to: IIADIHQETVFPSTVCRLLVMGL*KEAANS Trigger: TGAATTTGCAGCTTCTTTCAAAAGTCCCATCACAAG...TAACCGACATACAGTTGAAGGAAAGACGGTCTCCTGATGGATGTCTGCAATGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| CDS CCA 72 bp | AAAGTCCAGCAGAGGGAGGTGCAAACCAGCCGGGTGTaGACTGCTGATGGCAATCTGCTGAGGGCTGGAAGC | + |
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Preference number: 6 (lower is better) Translates to: KVQQREVQTSRV*TADGNLLRAGS Trigger: GCTTCCAGCCCTCAGCAGATTGCCATCAGCAGTCCACACCCGGCTGGTTTGCACCTCCCTCTGCTGGACTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| CDS CCA 72 bp | ACTGCTGATGGCAATCTGCTGAGGGCTGGAAGCATCTaGAAGAACACTCATCCAGCCCCAGCTGGTAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: TADGNLLRAGSI*KNTHPAPAGRP Trigger: TGGCCTACCAGCTGGGGCTGGATGAGTGTTCTTCCAGATGCTTCCAGCCCTCAGCAGATTGCCATCAGCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| CDS TCA 72 bp | AAACCAGCCGGGTGTGGACTGCTGATGGCAATCTGCTaGGGGCTGGAAGCATCTGGAAGAACACTCATCCAG | + |
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Preference number: 6 (lower is better) Translates to: KPAGCGLLMAIC*GLEASGRTLIQ Trigger: CTGGATGAGTGTTCTTCCAGATGCTTCCAGCCCTCAGCAGATTGCCATCAGCAGTCCACACCCGGCTGGTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221033.2 |
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| CDS CAA 72 bp | GCCATCCATTTCGGTGGAGAGCTTGTGATGGGACTTTaGAAAGAAGCTGCAAATTCAGCGACACCTGGTAGC | + |
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Preference number: 6 (lower is better) Translates to: AIHFGGELVMGL*KEAANSATPGS Trigger: GCTACCAGGTGTCGCTGAATTTGCAGCTTCTTTCAAAAGTCCCATCACAAGCTCTCCACCGAAATGGATGGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000137170.4 ENSMUST00000221033.2 |
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| CDS CCA 72 bp | AATGTCATCACGCTCTATCTCAGCCATCCATTTCGGTaGAGAGCTTGTGATGGGACTTTTGAAAGAAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: NVITLYLSHPFR*RACDGTFERSC Trigger: GCAGCTTCTTTCAAAAGTCCCATCACAAGCTCTCCACCGAAATGGATGGCTGAGATAGAGCGTGATGACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000137170.4 ENSMUST00000221033.2 |
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