Pregenerated sensors for LIN37 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036845Ensembl transcript IDs: ENSMUST00000043975.11, ENSMUST00000108164.8, ENSMUST00000156241.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGCACTGTGGGGCTGTTaGGCATCCAGGCGCGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGALWGC*ASRRGR Trigger: TCTGCCGCGCCTGGATGCGCAACAGCCCCACAGTGC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 64% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGCGCGCTCTCGCACTGTaGGGCTGTTGCGCATCCAGG | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGRALAL*GCCASR Trigger: CCTGGATGCGCAACAGCCCCACAGTGCGAGAGCGCG...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGGGGAAGCGGGCAGATaGCCTTTTGCCTGTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGGEAGR*PFACGS Trigger: GCTGCCACAGGCAAAAGGCCATCTGCCCGCTTCCCC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 63% GC, longest homopolymer 9 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGTTCTTCCTCCGCTGGTaGGGGAAGCGGGCAGATGGC | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGFFLRW*GKRADG Trigger: GCCATCTGCCCGCTTCCCCCACCAGCGGAGGAAGAA...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGCTCTTCTTCCTCCGCTaGTGGGGGAAGCGGGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGLFFLR*WGKRAD Trigger: ATCTGCCCGCTTCCCCCACCAGCGGAGGAAGAAGAG...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR TCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGCTGTTGATGACCTCTaGACCCTCTCCATCCTCGGG | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGAVDDL*TLSILG Trigger: CCCGAGGATGGAGAGGGTTCAGAGGTCATCAACAGC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 61% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR TCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGCGAAGCTGGTTCCGATaGGATGCCTCCTTCCACCTC | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGRSWFR*DASFHL Trigger: GAGGTGGAAGGAGGCATCTCATCGGAACCAGCTTCG...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR GCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGCTGGTTCCGATGAGATaGCTCCTTCCACCTCTGGCG | + |
|
Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGLVPMR*LLPPLA Trigger: CGCCAGAGGTGGAAGGAGGCATCTCATCGGAACCAG...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGAGAACGGCATCCAGCTaGTTCCGGGCTTTGGCCATC | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGRTASS*FRALAI Trigger: GATGGCCAAAGCCCGGAACCAGCTGGATGCCGTTCT...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGTCCAGGCGCGGCAGATaGGGTACAGTGGTGTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGSRRGR*GTVVCS Trigger: AGAACACACCACTGTACCCCATCTGCCGCGCCTGGA...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGTGGTCCAGGAGCTGTaGGTGGAGGCAGCTTGTACA | + |
|
Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGVVQEL*VEAACT Trigger: TGTACAAGCTGCCTCCACCCACAGCTCCTGGACCAC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 61% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGACAGGCATCTCCAAGTaGTCCAGGAGCTGTGGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGTGISK*SRSCGW Trigger: CCACCCACAGCTCCTGGACCACTTGGAGATGCCTGT...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR TCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGTTCTCCAGCAGACACTaGAGAACGGCATCCAGCTGG | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGFSSRH*RTASSW Trigger: CCAGCTGGATGCCGTTCTTCAGTGTCTGCTGGAGAA...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR TCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGCGTTCCCTGTCCATGTaGCTCTTCTCCAGCAGACAC | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGRSLSM*LFSSRH Trigger: GTGTCTGCTGGAGAAGAGTCACATGGACAGGGAACG...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR TCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGTGGTGTGTTCTCACTaGACTGGGCCAAGTCCACAC | + |
|
Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGVVCSH*TGPSPH Trigger: GTGTGGACTTGGCCCAGTTCAGTGAGAACACACCAC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR GCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGGGCAGATGGCCTTTTaGCTGTGGCAGCAATGGAAC | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGGQMAF*LWQQWN Trigger: GTTCCATTGCTGCCACAGGCAAAAGGCCATCTGCCC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 60% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGTGTTCTCACTGAACTaGGCCAAGTCCACACTCCGG | + |
|
Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGVFSLN*AKSTLR Trigger: CCGGAGTGTGGACTTGGCCCAGTTCAGTGAGAACAC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGTCCAGGAGCTGTGGGTaGAGGCAGCTTGTACACATC | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGSRSCG*RQLVHI Trigger: GATGTGTACAAGCTGCCTCCACCCACAGCTCCTGGA...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGCTGGTTCCGGGCTTTaGCCATCTCCATCTCTGATT | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGAGSGL*PSPSLI Trigger: AATCAGAGATGGAGATGGCCAAAGCCCGGAACCAGC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 59% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGAGGCTGCAGTGGGGATaGAATTCTGGATCTACAGGC | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGRLQWG*NSGSTG Trigger: GCCTGTAGATCCAGAATTCCATCCCCACTGCAGCCT...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGGTCTCAGGCTGCAGTaGGGATGGAATTCTGGATCT | + |
|
Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGGLRLQ*GWNSGS Trigger: AGATCCAGAATTCCATCCCCACTGCAGCCTGAGACC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 59% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR GCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGTCCACCTCTGGCGTATaGGTTTCCAACGTTGCATGT | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGSTSGV*VSNVAC Trigger: ACATGCAACGTTGGAAACGCATACGCCAGAGGTGGA...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGCAGATGGGGTACAGTaGTGTGTTCTCACTGAACTG | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGADGVQ*CVLTEL Trigger: CAGTTCAGTGAGAACACACCACTGTACCCCATCTGC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 58% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR TCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGATCTTCATACTTTCTaGGTAGCGAAGCTGGTTCCG | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGDLHTF*VAKLVP Trigger: CGGAACCAGCTTCGCTACTCAGAAAGTATGAAGATC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGATGGCCTTTTGCCTGTaGCAGCAATGGAACAATCCT | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGMAFCL*QQWNNP Trigger: AGGATTGTTCCATTGCTGCCACAGGCAAAAGGCCAT...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR GCA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGAACAATCCTTGTTGTaGGTATCCAAGGGGGTTTTC | + |
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Preference number: 4 (lower is better) Translates to: QLPYVWARNDGLASVGWGEQSLL*VSKGVF Trigger: GAAAACCCCCTTGGATACGCACAACAAGGATTGTTC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 56% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS CCA 90 bp | GAGGAGGCAGCGGTGAGCCGGGTGAGCGCTCGCGCTCTCGCACTGTaGGGCTGTTGCGCATCCAGGCGCGGCAGATGGGGTACAGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: EEAAVSRVSARALAL*GCCASRRGRWGTVV Trigger: CACCACTGTACCCCATCTGCCGCGCCTGGATGCGCAACAGCCCCACAGTGCGAGAGCGCGAGCGCTCACCCGGCTCACCGCTGCCTCCTC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS GCA 90 bp | GCGGTGAGCCGGGTGAGCGCTCGCGCTCTCGCACTGTGGGGCTGTTaGGCATCCAGGCGCGGCAGATGGGGTACAGTGGTGTGTTCTCAC | + |
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Preference number: 5 (lower is better) Translates to: AVSRVSARALALWGC*ASRRGRWGTVVCSH Trigger: GTGAGAACACACCACTGTACCCCATCTGCCGCGCCTGGATGCGCAACAGCCCCACAGTGCGAGAGCGCGAGCGCTCACCCGGCTCACCGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS-3UTR CAA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGCGCACTGTGGGGCTGTaGCGCATCCAGGCGCGGCAG | + |
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Preference number: 5 (lower is better) Translates to: QLPYVWARNDGLASVGWGRTVGL*RIQARQ Trigger: CTGCCGCGCCTGGATGCGCAACAGCCCCACAGTGCG...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS CCA 90 bp | CACTGTGGGGCTGTTGCGCATCCAGGCGCGGCAGATGGGGTACAGTaGTGTGTTCTCACTGAACTGGGCCAAGTCCACACTCCGGTCAAA | + |
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Preference number: 5 (lower is better) Translates to: HCGAVAHPGAADGVQ*CVLTELGQVHTPVK Trigger: TTTGACCGGAGTGTGGACTTGGCCCAGTTCAGTGAGAACACACCACTGTACCCCATCTGCCGCGCCTGGATGCGCAACAGCCCCACAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS CCA 90 bp | CATCGGGGGTACCCTCGGTCTCAGGCTGCAGTGGGGATGGAATTCTaGATCTACAGGCATCTCCAAGTGGTCCAGGAGCTGTGGGTGGAG | + |
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Preference number: 5 (lower is better) Translates to: HRGYPRSQAAVGMEF*IYRHLQVVQELWVE Trigger: CTCCACCCACAGCTCCTGGACCACTTGGAGATGCCTGTAGATCCAGAATTCCATCCCCACTGCAGCCTGAGACCGAGGGTACCCCCGATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 |
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| CDS-3UTR CAA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGAGCTGGTTCCGGGCTTaGGCCATCTCCATCTCTGAT | + |
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Preference number: 5 (lower is better) Translates to: QLPYVWARNDGLASVGWGSWFRA*AISISD Trigger: ATCAGAGATGGAGATGGCCAAAGCCCGGAACCAGCT...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CAA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGGTGGGTGGAGGCAGCTaGTACACATCACGGTTTTTG | + |
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Preference number: 5 (lower is better) Translates to: QLPYVWARNDGLASVGWGVGGGS*YTSRFL Trigger: CAAAAACCGTGATGTGTACAAGCTGCCTCCACCCAC...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 59% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS CCA 90 bp | CTCGGAAGGTTCATCATCGGGGGTACCCTCGGTCTCAGGCTGCAGTaGGGATGGAATTCTGGATCTACAGGCATCTCCAAGTGGTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: LGRFIIGGTLGLRLQ*GWNSGSTGISKWSR Trigger: CCTGGACCACTTGGAGATGCCTGTAGATCCAGAATTCCATCCCCACTGCAGCCTGAGACCGAGGGTACCCCCGATGATGAACCTTCCGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 |
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| CDS GCA 90 bp | TCAGGCTCGGAAGGTTCATCATCGGGGGTACCCTCGGTCTCAGGCTaGAGTGGGGATGGAATTCTGGATCTACAGGCATCTCCAAGTGGT | + |
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Preference number: 5 (lower is better) Translates to: SGSEGSSSGVPSVSG*SGDGILDLQASPSG Trigger: ACCACTTGGAGATGCCTGTAGATCCAGAATTCCATCCCCACTGCAGCCTGAGACCGAGGGTACCCCCGATGATGAACCTTCCGAGCCTGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 |
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| CDS CCA 90 bp | AGGTTCATCATCGGGGGTACCCTCGGTCTCAGGCTGCAGTGGGGATaGAATTCTGGATCTACAGGCATCTCCAAGTGGTCCAGGAGCTGT | + |
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Preference number: 5 (lower is better) Translates to: RFIIGGTLGLRLQWG*NSGSTGISKWSRSC Trigger: ACAGCTCCTGGACCACTTGGAGATGCCTGTAGATCCAGAATTCCATCCCCACTGCAGCCTGAGACCGAGGGTACCCCCGATGATGAACCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 |
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| CDS-3UTR CAA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGTCACGGTTTTTGCTGTaGATGACCTCTGAACCCTCT | + |
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Preference number: 5 (lower is better) Translates to: QLPYVWARNDGLASVGWGSRFLL*MTSEPS Trigger: AGAGGGTTCAGAGGTCATCAACAGCAAAAACCGTGA...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS CCA 90 bp | AGGCTGCAGTGGGGATGGAATTCTGGATCTACAGGCATCTCCAAGTaGTCCAGGAGCTGTGGGTGGAGGCAGCTTGTACACATCACGGTT | + |
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Preference number: 5 (lower is better) Translates to: RLQWGWNSGSTGISK*SRSCGWRQLVHITV Trigger: AACCGTGATGTGTACAAGCTGCCTCCACCCACAGCTCCTGGACCACTTGGAGATGCCTGTAGATCCAGAATTCCATCCCCACTGCAGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS-3UTR CAA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGTACACATCACGGTTTTaGCTGTTGATGACCTCTGAA | + |
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Preference number: 5 (lower is better) Translates to: QLPYVWARNDGLASVGWGYTSRF*LLMTSE Trigger: TTCAGAGGTCATCAACAGCAAAAACCGTGATGTGTA...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS-3UTR CAA 90 bp | CAACTGCCTTATGTCTGGGCCAGGAACGATGGCCTGGCCAGTGTGGGTTGGGGGTATGCGTTTCCAACGTaGCATGTTGCGATAGATAAG | + |
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Preference number: 5 (lower is better) Translates to: QLPYVWARNDGLASVGWGYAFPT*HVAIDK Trigger: CTTATCTATCGCAACATGCAACGTTGGAAACGCATA...CCCCCAACCCACACTGGCCAGGCCATCGTTCCTGGCCCAGACATAAGGCAGTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043975.11 |
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| CDS CCA 90 bp | ATCCAGGCGCGGCAGATGGGGTACAGTGGTGTGTTCTCACTGAACTaGGCCAAGTCCACACTCCGGTCAAATAGCTTGATCACATACGTA | + |
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Preference number: 5 (lower is better) Translates to: IQARQMGYSGVFSLN*AKSTLRSNSLITYV Trigger: TACGTATGTGATCAAGCTATTTGACCGGAGTGTGGACTTGGCCCAGTTCAGTGAGAACACACCACTGTACCCCATCTGCCGCGCCTGGAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS CCA 90 bp | AATTCTGGATCTACAGGCATCTCCAAGTGGTCCAGGAGCTGTGGGTaGAGGCAGCTTGTACACATCACGGTTTTTGCTGTTGATGACCTC | + |
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Preference number: 5 (lower is better) Translates to: NSGSTGISKWSRSCG*RQLVHITVFAVDDL Trigger: GAGGTCATCAACAGCAAAAACCGTGATGTGTACAAGCTGCCTCCACCCACAGCTCCTGGACCACTTGGAGATGCCTGTAGATCCAGAATT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS CCA 72 bp | GCGGTGAGCCGGGTGAGCGCTCGCGCTCTCGCACTGTaGGGCTGTTGCGCATCCAGGCGCGGCAGATGGGGT | + |
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Preference number: 6 (lower is better) Translates to: AVSRVSARALAL*GCCASRRGRWG Trigger: ACCCCATCTGCCGCGCCTGGATGCGCAACAGCCCCACAGTGCGAGAGCGCGAGCGCTCACCCGGCTCACCGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS CAA 72 bp | CCGGGTGAGCGCTCGCGCTCTCGCACTGTGGGGCTGTaGCGCATCCAGGCGCGGCAGATGGGGTACAGTGGT | + |
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Preference number: 6 (lower is better) Translates to: PGERSRSRTVGL*RIQARQMGYSG Trigger: ACCACTGTACCCCATCTGCCGCGCCTGGATGCGCAACAGCCCCACAGTGCGAGAGCGCGAGCGCTCACCCGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS CAA 90 bp | AGCGGTGAGCCGGGTGAGCGCTCGCGCTCTCGCACTGTGGGGCTGTaGCGCATCCAGGCGCGGCAGATGGGGTACAGTGGTGTGTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: SGEPGERSRSRTVGL*RIQARQMGYSGVFS Trigger: TGAGAACACACCACTGTACCCCATCTGCCGCGCCTGGATGCGCAACAGCCCCACAGTGCGAGAGCGCGAGCGCTCACCCGGCTCACCGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS CAA 90 bp | GGAGCTGTGGGTGGAGGCAGCTTGTACACATCACGGTTTTTGCTGTaGATGACCTCTGAACCCTCTCCATCCTCGGGCAGAGGAGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: GAVGGGSLYTSRFLL*MTSEPSPSSGRGGS Trigger: GCTGCCTCCTCTGCCCGAGGATGGAGAGGGTTCAGAGGTCATCAACAGCAAAAACCGTGATGTGTACAAGCTGCCTCCACCCACAGCTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS CCA 72 bp | ATCGGGGGTACCCTCGGTCTCAGGCTGCAGTGGGGATaGAATTCTGGATCTACAGGCATCTCCAAGTGGTCC | + |
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Preference number: 6 (lower is better) Translates to: IGGTLGLRLQWG*NSGSTGISKWS Trigger: GGACCACTTGGAGATGCCTGTAGATCCAGAATTCCATCCCCACTGCAGCCTGAGACCGAGGGTACCCCCGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 |
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| CDS CAA 90 bp | GGTCCAGGAGCTGTGGGTGGAGGCAGCTTGTACACATCACGGTTTTaGCTGTTGATGACCTCTGAACCCTCTCCATCCTCGGGCAGAGGA | + |
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Preference number: 6 (lower is better) Translates to: GPGAVGGGSLYTSRF*LLMTSEPSPSSGRG Trigger: TCCTCTGCCCGAGGATGGAGAGGGTTCAGAGGTCATCAACAGCAAAAACCGTGATGTGTACAAGCTGCCTCCACCCACAGCTCCTGGACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS CCA 72 bp | GCTGGTGGGGGAAGCGGGCAGATGGCCTTTTGCCTGTaGCAGCAATGGAACAATCCTTGTTGTGCGTATCCA | + |
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Preference number: 6 (lower is better) Translates to: AGGGSGQMAFCL*QQWNNPCCAYP Trigger: TGGATACGCACAACAAGGATTGTTCCATTGCTGCCACAGGCAAAAGGCCATCTGCCCGCTTCCCCCACCAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS TCA 72 bp | CTTGTACACATCACGGTTTTTGCTGTTGATGACCTCTaGACCCTCTCCATCCTCGGGCAGAGGAGGCAGCGG | + |
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Preference number: 6 (lower is better) Translates to: LVHITVFAVDDL*TLSILGQRRQR Trigger: CCGCTGCCTCCTCTGCCCGAGGATGGAGAGGGTTCAGAGGTCATCAACAGCAAAAACCGTGATGTGTACAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS CCA 72 bp | TTCATCATCGGGGGTACCCTCGGTCTCAGGCTGCAGTaGGGATGGAATTCTGGATCTACAGGCATCTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: FIIGGTLGLRLQ*GWNSGSTGISK Trigger: CTTGGAGATGCCTGTAGATCCAGAATTCCATCCCCACTGCAGCCTGAGACCGAGGGTACCCCCGATGATGAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 |
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| CDS CCA 72 bp | GGAAGCGGGCAGATGGCCTTTTGCCTGTGGCAGCAATaGAACAATCCTTGTTGTGCGTATCCAAGGGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: GSGQMAFCLWQQ*NNPCCAYPRGF Trigger: AAACCCCCTTGGATACGCACAACAAGGATTGTTCCATTGCTGCCACAGGCAAAAGGCCATCTGCCCGCTTCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS CCA 72 bp | CGGCAGATGGGGTACAGTGGTGTGTTCTCACTGAACTaGGCCAAGTCCACACTCCGGTCAAATAGCTTGATC | + |
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Preference number: 6 (lower is better) Translates to: RQMGYSGVFSLN*AKSTLRSNSLI Trigger: GATCAAGCTATTTGACCGGAGTGTGGACTTGGCCCAGTTCAGTGAGAACACACCACTGTACCCCATCTGCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS CCA 72 bp | TGGATCTACAGGCATCTCCAAGTGGTCCAGGAGCTGTaGGTGGAGGCAGCTTGTACACATCACGGTTTTTGC | + |
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Preference number: 6 (lower is better) Translates to: WIYRHLQVVQEL*VEAACTHHGFC Trigger: GCAAAAACCGTGATGTGTACAAGCTGCCTCCACCCACAGCTCCTGGACCACTTGGAGATGCCTGTAGATCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 ENSMUST00000156241.2 |
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| CDS CAA 90 bp | CCGATGAGATGCCTCCTTCCACCTCTGGCGTATGCGTTTCCAACGTaGCATGTTGCGATAGATAAGTGTGGAAGGAGAAGGTTCAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: PMRCLLPPLAYAFPT*HVAIDKCGRRRFRL Trigger: GAGCCTGAACCTTCTCCTTCCACACTTATCTATCGCAACATGCAACGTTGGAAACGCATACGCCAGAGGTGGAAGGAGGCATCTCATCGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 |
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| CDS CAA 72 bp | TGCCTCCTTCCACCTCTGGCGTATGCGTTTCCAACGTaGCATGTTGCGATAGATAAGTGTGGAAGGAGAAGG | + |
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Preference number: 6 (lower is better) Translates to: CLLPPLAYAFPT*HVAIDKCGRRR Trigger: CCTTCTCCTTCCACACTTATCTATCGCAACATGCAACGTTGGAAACGCATACGCCAGAGGTGGAAGGAGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043975.11 ENSMUST00000108164.8 |
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