Pregenerated sensors for LIN28B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063804Ensembl transcript IDs: ENSMUST00000079390.7
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCAGTTCCTCAGCAGTAGTTAACATCCCGGCCGGCTGCTCTCTGTaGACCACTATTCCCCTGTGCTTGCATGAGGTAGACTTCCCGCCC | + |
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Preference number: 1 (lower is better) Translates to: PSSSAVVNIPAGCSL*TTIPLCLHEVDFPP Trigger: GGGCGGGAAGTCTACCTCATGCAAGCACAGGGGAATAGTGGTCCACAGAGAGCAGCCGGCCGGGATGTTAACTACTGCTGAGGAACTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR GCA 90 bp | GTGCTACAGATTAAAAGCGTCTGTACCAGAGAATTATCAGCAACCTaGAGGCTGCAGCAGCATCAAGGTGTGCTCTGTGGTAGCTGGGAG | + |
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Preference number: 1 (lower is better) Translates to: VLQIKSVCTRELSAT*RLQQHQGVLCGSWE Trigger: CTCCCAGCTACCACAGAGCACACCTTGATGCTGCTGCAGCCTGCAGGTTGCTGATAATTCTCTGGTACAGACGCTTTTAATCTGTAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR CCA 90 bp | GCAACCTGCAGGCTGCAGCAGCATCAAGGTGTGCTCTGTGGTAGCTaGGAGGTAGCCATGTGCTGTAAACAGAATTTTCACTTGTGTGAA | + |
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Preference number: 1 (lower is better) Translates to: ATCRLQQHQGVLCGS*EVAMCCKQNFHLCE Trigger: TTCACACAAGTGAAAATTCTGTTTACAGCACATGGCTACCTCCCAGCTACCACAGAGCACACCTTGATGCTGCTGCAGCCTGCAGGTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR TCA 90 bp | TGGGAGGTAGCCATGTGCTGTAAACAGAATTTTCACTTGTGTGAATaGGCAAGTGCTCATATCAGTGAGTTCACATCTGCAGGTAGTGGA | + |
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Preference number: 1 (lower is better) Translates to: WEVAMCCKQNFHLCE*ASAHISEFTSAGSG Trigger: TCCACTACCTGCAGATGTGAACTCACTGATATGAGCACTTGCTCATTCACACAAGTGAAAATTCTGTTTACAGCACATGGCTACCTCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR TCA 90 bp | ATAACAGCAACAGCAAAACACTCTATCAGCATCAAGATAGAGTTATaGATACAGACTTGGGAGGCACCAAGTATCCCAAAAGCCTTTAGT | + |
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Preference number: 1 (lower is better) Translates to: ITATAKHSISIKIEL*IQTWEAPSIPKAFS Trigger: ACTAAAGGCTTTTGGGATACTTGGTGCCTCCCAAGTCTGTATTCATAACTCTATCTTGATGCTGATAGAGTGTTTTGCTGTTGCTGTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR GCA 90 bp | GATTTTCAATGCTTAGAGATGCCCAATTATCTGAGGAAGAGTATGTaGTTTTATCTACATACACACACACACACACACACATACACACAC | + |
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Preference number: 1 (lower is better) Translates to: DFQCLEMPNYLRKSM*FYLHTHTHTHTYTH Trigger: GTGTGTGTATGTGTGTGTGTGTGTGTGTGTATGTAGATAAAAGCACATACTCTTCCTCAGATAATTGGGCATCTCTAAGCATTGAAAATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR TCA 90 bp | TTTCCTATTTTGATAGTCAAGGAACTTTGGTTTGAGCGTTCAGAGTaGCCTATCATATTTTGCTTGTACAACTGTTACCTTGCTCATTAT | + |
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Preference number: 1 (lower is better) Translates to: FPILIVKELWFERSE*PIIFCLYNCYLAHY Trigger: ATAATGAGCAAGGTAACAGTTGTACAAGCAAAATATGATAGGTCACTCTGAACGCTCAAACCAAAGTTCCTTGACTATCAAAATAGGAAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR TCA 90 bp | TTCACATCTGCAGGTAGTGGAATTCCGCTTTACAAGACTTTGACATaGAATTTAAAAAGGGAGGACCAATATCTGATATTCAGAATTATG | + |
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Preference number: 1 (lower is better) Translates to: FTSAGSGIPLYKTLT*NLKREDQYLIFRIM Trigger: CATAATTCTGAATATCAGATATTGGTCCTCCCTTTTTAAATTTCATGTCAAAGTCTTGTAAAGCGGAATTCCACTACCTGCAGATGTGAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR TCA 90 bp | CAAGGTGTGCTCTGTGGTAGCTGGGAGGTAGCCATGTGCTGTAAACAGAATTTTACCACCCAACTCCCATaGCAAGACACACAGGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: QGVLCGSWEVAMCCKQNFTTQLP*QDTQEE Trigger: TTCCTCCTGTGTGTCTTGTCATGGGAGTTGGGTGGT...AAAATTCTGTTTACAGCACATGGCTACCTCCCAGCTACCACAGAGCACACCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR TCA 90 bp | CAAGGTGTGCTCTGTGGTAGCTGGGAGGTAGCCATGTGCTGTAAACAGAATTTTGGCAGCTCTGAGATCTaGAGTATGCTTTGGTTCACA | + |
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Preference number: 2 (lower is better) Translates to: QGVLCGSWEVAMCCKQNFGSSEI*SMLWFT Trigger: TGTGAACCAAAGCATACTTCAGATCTCAGAGCTGCC...AAAATTCTGTTTACAGCACATGGCTACCTCCCAGCTACCACAGAGCACACCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR TCA 90 bp | CAAGGTGTGCTCTGTGGTAGCTGGGAGGTAGCCATGTGCTGTAAACAGAATTTTATATGGTATGTTCCCTaGGCAAAGTTCTTTGTCCTG | + |
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Preference number: 2 (lower is better) Translates to: QGVLCGSWEVAMCCKQNFIWYVP*AKFFVL Trigger: CAGGACAAAGAACTTTGCTCAGGGAACATACCATAT...AAAATTCTGTTTACAGCACATGGCTACCTCCCAGCTACCACAGAGCACACCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR TCA 90 bp | CAAGGTGTGCTCTGTGGTAGCTGGGAGGTAGCCATGTGCTGTAAACAGAATTTTTCCTATAACTTGATCTaGGTGCTCATCCTGAATCTA | + |
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Preference number: 2 (lower is better) Translates to: QGVLCGSWEVAMCCKQNFSYNLI*VLILNL Trigger: TAGATTCAGGATGAGCACTCAGATCAAGTTATAGGA...AAAATTCTGTTTACAGCACATGGCTACCTCCCAGCTACCACAGAGCACACCTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR GCA 90 bp | CACACCATACTTCCGCTTCTATACTCAAGGAACCTGCCATGGCATCAATATTATACCACTATTCCCCTGTaGTTGCATGAGGTAGACTTC | + |
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Preference number: 2 (lower is better) Translates to: HTILPLLYSRNLPWHQYYTTIPL*LHEVDF Trigger: GAAGTCTACCTCATGCAAGCACAGGGGAATAGTGGT...ATAATATTGATGCCATGGCAGGTTCCTTGAGTATAGAAGCGGAAGTATGGTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR TCA 90 bp | AGCACAACTCCACTTGCACACACTTCCCTAGATTTTATACCAAAATGGGAAGTTGCCTTTAGTACCATTTaGCTGGCAGCTCTGAGATCT | + |
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Preference number: 2 (lower is better) Translates to: STTPLAHTSLDFIPKWEVAFSTI*LAALRS Trigger: AGATCTCAGAGCTGCCAGTCAAATGGTACTAAAGGC...AACTTCCCATTTTGGTATAAAATCTAGGGAAGTGTGTGCAAGTGGAGTTGTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR TCA 90 bp | ATTAAAAGCGTCTGTACCAGAGAATTATCAGCAACCTGCAGGCTGCAGCAGCATTTTGAGCGTTCAGAGTaGCCTATCATATTTTGCTTG | + |
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Preference number: 2 (lower is better) Translates to: IKSVCTRELSATCRLQQHFERSE*PIIFCL Trigger: CAAGCAAAATATGATAGGTCACTCTGAACGCTCAAA...ATGCTGCTGCAGCCTGCAGGTTGCTGATAATTCTCTGGTACAGACGCTTTTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR TCA 90 bp | AGCACAACTCCACTTGCACACACTTCCCTAGATTTTATACCAAAATGGGAAGTTGGTCTGGTTAGATGCTaGAAAGAAGTTGACTGCACC | + |
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Preference number: 2 (lower is better) Translates to: STTPLAHTSLDFIPKWEVGLVRC*KEVDCT Trigger: GGTGCAGTCAACTTCTTTTCAGCATCTAACCAGACC...AACTTCCCATTTTGGTATAAAATCTAGGGAAGTGTGTGCAAGTGGAGTTGTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR GCA 90 bp | ATTAAAAGCGTCTGTACCAGAGAATTATCAGCAACCTGCAGGCTGCAGCAGCATTTACAGCCAAAATTATaGACTGCAATCCCTTGGTAC | + |
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Preference number: 2 (lower is better) Translates to: IKSVCTRELSATCRLQQHLQPKL*TAIPWY Trigger: GTACCAAGGGATTGCAGTGCATAATTTTGGCTGTAA...ATGCTGCTGCAGCCTGCAGGTTGCTGATAATTCTCTGGTACAGACGCTTTTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR CCA 90 bp | CAAGGTGTGCTCTGTGGTAGCTGGGAGGTAGCCATGTGCTGTAAACAGAATTTTTTTAGTAAGTCGGTCTaGTTAGATGCTGAAAAGAAG | + |
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Preference number: 2 (lower is better) Translates to: QGVLCGSWEVAMCCKQNFFSKSV*LDAEKK Trigger: CTTCTTTTCAGCATCTAACCAGACCGACTTACTAAA...AAAATTCTGTTTACAGCACATGGCTACCTCCCAGCTACCACAGAGCACACCTTG 43% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR CAA 90 bp | AAGCGACTCCTCCGTAGAATGTGTCTCATGAGTCACGATGCTTTCTaGTTTGATTATCTGAGCTTATACCAACAGGCCCATATAGTTACA | + |
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Preference number: 2 (lower is better) Translates to: KRLLRRMCLMSHDAF*FDYLSLYQQAHIVT Trigger: TGTAACTATATGGGCCTGTTGGTATAAGCTCAGATAATCAAACAAGAAAGCATCGTGACTCATGAGACACATTCTACGGAGGAGTCGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR TCA 90 bp | ATTAAAAGCGTCTGTACCAGAGAATTATCAGCAACCTGCAGGCTGCAGCAGCATCGATGCTTTCTTGTTTaGTTATCTGAGCTTATACCA | + |
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Preference number: 2 (lower is better) Translates to: IKSVCTRELSATCRLQQHRCFLV*LSELIP Trigger: TGGTATAAGCTCAGATAATCAAACAAGAAAGCATCG...ATGCTGCTGCAGCCTGCAGGTTGCTGATAATTCTCTGGTACAGACGCTTTTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR TCA 90 bp | CAGCACTTCTCTATGGCTACATCACATTCAATATCGTCAAAGGTAAGCTCTGTATCTTGTTTGATTATCTaGGCTTATACCAACAGGCCC | + |
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Preference number: 2 (lower is better) Translates to: QHFSMATSHSISSKVSSVSCLII*AYTNRP Trigger: GGGCCTGTTGGTATAAGCTCAGATAATCAAACAAGA...TACAGAGCTTACCTTTGACGATATTGAATGTGATGTAGCCATAGAGAAGTGCTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR TCA 90 bp | CAGCACTTCTCTATGGCTACATCACATTCAATATCGTCAAAGGTAAGCTCTGTAGCCTGTACTCTTATGTaGAATCCTCACACATACATA | + |
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Preference number: 2 (lower is better) Translates to: QHFSMATSHSISSKVSSVACTLM*NPHTYI Trigger: TATGTATGTGTGAGGATTTCACATAAGAGTACAGGC...TACAGAGCTTACCTTTGACGATATTGAATGTGATGTAGCCATAGAGAAGTGCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR GCA 90 bp | CACACCATACTTCCGCTTCTATACTCAAGGAACCTGCCATGGCATCAATATTATCTGAGGAAGAGTATGTaGTTTTATCTACATACACAC | + |
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Preference number: 2 (lower is better) Translates to: HTILPLLYSRNLPWHQYYLRKSM*FYLHTH Trigger: GTGTGTATGTAGATAAAAGCACATACTCTTCCTCAG...ATAATATTGATGCCATGGCAGGTTCCTTGAGTATAGAAGCGGAAGTATGGTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR GCA 90 bp | AGCACAACTCCACTTGCACACACTTCCCTAGATTTTATACCAAAATGGGAAGTTACATGCAGTTGCAAATaGCTATCTGTGCTACAGATT | + |
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Preference number: 2 (lower is better) Translates to: STTPLAHTSLDFIPKWEVTCSCK*LSVLQI Trigger: AATCTGTAGCACAGATAGGCATTTGCAACTGCATGT...AACTTCCCATTTTGGTATAAAATCTAGGGAAGTGTGTGCAAGTGGAGTTGTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR CCA 90 bp | AGCACAACTCCACTTGCACACACTTCCCTAGATTTTATACCAAAATGGGAAGTTACTCATTCACTCTGCTaGCCATCAAACACTATTCTT | + |
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Preference number: 2 (lower is better) Translates to: STTPLAHTSLDFIPKWEVTHSLC*PSNTIL Trigger: AAGAATAGTGTTTGATGGCCAGCAGAGTGAATGAGT...AACTTCCCATTTTGGTATAAAATCTAGGGAAGTGTGTGCAAGTGGAGTTGTGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR TCA 90 bp | TACAGCCAAAATTATGCACTGCAATCCCTTGGTACCTTCTTGAAGATGTTTCAAATCAAGATAGAGTTATaGATACAGACTTGGGAGGCA | + |
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Preference number: 2 (lower is better) Translates to: YSQNYALQSLGTFLKMFQIKIEL*IQTWEA Trigger: TGCCTCCCAAGTCTGTATTCATAACTCTATCTTGAT...TTGAAACATCTTCAAGAAGGTACCAAGGGATTGCAGTGCATAATTTTGGCTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR GCA 72 bp | GCGTCTGTACCAGAGAATTATCAGCAACCTGCAGGCTaGAGCAGCATCAAGGTGTGCTCTGTGGTAGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: ASVPENYQQPAG*SSIKVCSVVAG Trigger: CCCAGCTACCACAGAGCACACCTTGATGCTGCTGCAGCCTGCAGGTTGCTGATAATTCTCTGGTACAGACGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR CCA 72 bp | TCAGCAGTAGTTAACATCCCGGCCGGCTGCTCTCTGTaGACCACTATTCCCCTGTGCTTGCATGAGGTAGAC | + |
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Preference number: 3 (lower is better) Translates to: SAVVNIPAGCSL*TTIPLCLHEVD Trigger: GTCTACCTCATGCAAGCACAGGGGAATAGTGGTCCACAGAGAGCAGCCGGCCGGGATGTTAACTACTGCTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR CCA 72 bp | AGGCTGCAGCAGCATCAAGGTGTGCTCTGTGGTAGCTaGGAGGTAGCCATGTGCTGTAAACAGAATTTTCAC | + |
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Preference number: 3 (lower is better) Translates to: RLQQHQGVLCGS*EVAMCCKQNFH Trigger: GTGAAAATTCTGTTTACAGCACATGGCTACCTCCCAGCTACCACAGAGCACACCTTGATGCTGCTGCAGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR GCA 72 bp | ATTAAAAGCGTCTGTACCAGAGAATTATCAGCAACCTaGAGGCTGCAGCAGCATCAAGGTGTGCTCTGTGGT | + |
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Preference number: 3 (lower is better) Translates to: IKSVCTRELSAT*RLQQHQGVLCG Trigger: ACCACAGAGCACACCTTGATGCTGCTGCAGCCTGCAGGTTGCTGATAATTCTCTGGTACAGACGCTTTTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR GCA 72 bp | GCAGAGAGCAGTCCACCAAGTCTGTGGAATGCACTGTaGCAGTCTAATAGCAACTCCTCCTTTGTTCTTTCT | + |
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Preference number: 3 (lower is better) Translates to: AESSPPSLWNAL*QSNSNSSFVLS Trigger: AGAAAGAACAAAGGAGGAGTTGCTATTAGACTGGCACAGTGCATTCCACAGACTTGGTGGACTGCTCTCTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR CAA 90 bp | CAAGGTGTGCTCTGTGGTAGCTGGGAGGTAGCCATGTGCTGTAAACAGAATTTTCAAAGGAGGCTTCTGTaGCCACCATCCCTTAAAAAC | + |
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Preference number: 3 (lower is better) Translates to: QGVLCGSWEVAMCCKQNFQRRLL*PPSLKN Trigger: GTTTTTAAGGGATGGTGGCAACAGAAGCCTCCTTTG...AAAATTCTGTTTACAGCACATGGCTACCTCCCAGCTACCACAGAGCACACCTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR GCA 72 bp | CTGACACTTTCTCGTCGTACAGGACTCCACCGTAAATaGCGTAGTTCTGTTCCAAGTATAAGGTCAACAATG | + |
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Preference number: 3 (lower is better) Translates to: LTLSRRTGLHRK*RSSVPSIRSTM Trigger: CATTGTTGACCTTATACTTGGAACAGAACTACGGCATTTACGGTGGAGTCCTGTACGACGAGAAAGTGTCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR CAA 90 bp | TTATCTGAGCTTATACCAACAGGCCCATATAGTTACAGCCAAAATTATGCACTGACTATTCCCCTGTGCTaGCATGAGGTAGACTTCCCG | + |
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Preference number: 3 (lower is better) Translates to: LSELIPTGPYSYSQNYALTIPLC*HEVDFP Trigger: CGGGAAGTCTACCTCATGCAAGCACAGGGGAATAGT...CAGTGCATAATTTTGGCTGTAACTATATGGGCCTGTTGGTATAAGCTCAGATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR CAA 90 bp | ATTAAAAGCGTCTGTACCAGAGAATTATCAGCAACCTGCAGGCTGCAGCAGCATGATCTGAAGTATGCTTaGGTTCACATGAAAGGTAAC | + |
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Preference number: 3 (lower is better) Translates to: IKSVCTRELSATCRLQQHDLKYA*VHMKGN Trigger: GTTACCTTTCATGTGAACCAAAGCATACTTCAGATC...ATGCTGCTGCAGCCTGCAGGTTGCTGATAATTCTCTGGTACAGACGCTTTTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR CAA 90 bp | AGCACAACTCCACTTGCACACACTTCCCTAGATTTTATACCAAAATGGGAAGTTGTTATGAATACAGACTaGGGAGGCACCAAGTATCCC | + |
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Preference number: 3 (lower is better) Translates to: STTPLAHTSLDFIPKWEVVMNTD*GGTKYP Trigger: GGGATACTTGGTGCCTCCCAAGTCTGTATTCATAAC...AACTTCCCATTTTGGTATAAAATCTAGGGAAGTGTGTGCAAGTGGAGTTGTGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR TCA 72 bp | GCCATGTGCTGTAAACAGAATTTTCACTTGTGTGAATaGGCAAGTGCTCATATCAGTGAGTTCACATCTGCA | + |
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Preference number: 3 (lower is better) Translates to: AMCCKQNFHLCE*ASAHISEFTSA Trigger: TGCAGATGTGAACTCACTGATATGAGCACTTGCTCATTCACACAAGTGAAAATTCTGTTTACAGCACATGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR CCA 72 bp | TTTTCTGGAGCTACGTATCCAAGGATTAAAAGCTTATaGCAGTCGGAGGCATCTAGAGTTAAGTTACTACCT | + |
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Preference number: 3 (lower is better) Translates to: FSGATYPRIKSL*QSEASRVKLLP Trigger: AGGTAGTAACTTAACTCTAGATGCCTCCGACTGCCATAAGCTTTTAATCCTTGGATACGTAGCTCCAGAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR TCA 72 bp | ACAGCAAAACACTCTATCAGCATCAAGATAGAGTTATaGATACAGACTTGGGAGGCACCAAGTATCCCAAAA | + |
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Preference number: 3 (lower is better) Translates to: TAKHSISIKIEL*IQTWEAPSIPK Trigger: TTTTGGGATACTTGGTGCCTCCCAAGTCTGTATTCATAACTCTATCTTGATGCTGATAGAGTGTTTTGCTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR TCA 72 bp | CTGAGAATCCATCTGAGAAGATCCTATAACTTGATCTaGGTGCTCATCCTGAATCTATCACACACCATACTT | + |
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Preference number: 3 (lower is better) Translates to: LRIHLRRSYNLI*VLILNLSHTIL Trigger: AAGTATGGTGTGTGATAGATTCAGGATGAGCACTCAGATCAAGTTATAGGATCTTCTCAGATGGATTCTCAG 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR GCA 72 bp | TGCTTAGAGATGCCCAATTATCTGAGGAAGAGTATGTaGTTTTATCTACATACACACACACACACACACACA | + |
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Preference number: 3 (lower is better) Translates to: CLEMPNYLRKSM*FYLHTHTHTHT Trigger: TGTGTGTGTGTGTGTGTGTGTATGTAGATAAAAGCACATACTCTTCCTCAGATAATTGGGCATCTCTAAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR-3UTR CAA 90 bp | AGCACAACTCCACTTGCACACACTTCCCTAGATTTTATACCAAAATGGGAAGTTAGTCACGATGCTTTCTaGTTTGATTATCTGAGCTTA | + |
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Preference number: 3 (lower is better) Translates to: STTPLAHTSLDFIPKWEVSHDAF*FDYLSL Trigger: TAAGCTCAGATAATCAAACAAGAAAGCATCGTGACT...AACTTCCCATTTTGGTATAAAATCTAGGGAAGTGTGTGCAAGTGGAGTTGTGCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR TCA 72 bp | TTGATAGTCAAGGAACTTTGGTTTGAGCGTTCAGAGTaGCCTATCATATTTTGCTTGTACAACTGTTACCTT | + |
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Preference number: 3 (lower is better) Translates to: LIVKELWFERSE*PIIFCLYNCYL Trigger: AAGGTAACAGTTGTACAAGCAAAATATGATAGGTCACTCTGAACGCTCAAACCAAAGTTCCTTGACTATCAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR GCA 72 bp | ATGAAACCATCTCAAATGCTTCACATGGATTTTCAATaGTTAGAGATGCCCAATTATCTGAGGAAGAGTATG | + |
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Preference number: 3 (lower is better) Translates to: MKPSQMLHMDFQ*LEMPNYLRKSM Trigger: CATACTCTTCCTCAGATAATTGGGCATCTCTAAGCATTGAAAATCCATGTGAAGCATTTGAGATGGTTTCAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR TCA 72 bp | TATATATATATGTGTGTGTGTGCCTGTACTCTTATGTaGAATCCTCACACATACATACAGATTCAAGTCTCC | + |
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Preference number: 3 (lower is better) Translates to: YIYMCVCACTLM*NPHTYIQIQVS Trigger: GGAGACTTGAATCTGTATGTATGTGTGAGGATTTCACATAAGAGTACAGGCACACACACACATATATATATA 36% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR GCA 72 bp | GAAATCTATGAGAAAAACAGGCGTTTTTCAGAAACATaGAGTTGCAAATGCCTATCTGTGCTACAGATTAAA | + |
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Preference number: 3 (lower is better) Translates to: EIYEKNRRFSET*SCKCLSVLQIK Trigger: TTTAATCTGTAGCACAGATAGGCATTTGCAACTGCATGTTTCTGAAAAACGCCTGTTTTTCTCATAGATTTC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR GCA 90 bp | CACACCATACTTCCGCTTCTATACTCAAGGAACCTGCCATGGCATCAATATTATCAGTGGCCAGTGCCATaGAGAACCTGGGGTTCGTCC | + |
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Preference number: 4 (lower is better) Translates to: HTILPLLYSRNLPWHQYYQWPVP*RTWGSS Trigger: GGACGAACCCCAGGTTCTGCATGGCACTGGCCACTG...ATAATATTGATGCCATGGCAGGTTCCTTGAGTATAGAAGCGGAAGTATGGTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CCA 90 bp | TACAGCCAAAATTATGCACTGCAATCCCTTGGTACCTTCTTGAAGATGTTTCAATGCCGCAGAGCTGCATaGCTGGGATTCTGCCTCCTG | + |
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Preference number: 4 (lower is better) Translates to: YSQNYALQSLGTFLKMFQCRRAA*LGFCLL Trigger: CAGGAGGCAGAATCCCAGCCATGCAGCTCTGCGGCA...TTGAAACATCTTCAAGAAGGTACCAAGGGATTGCAGTGCATAATTTTGGCTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR TCA 90 bp | CAGCACTTCTCTATGGCTACATCACATTCAATATCGTCAAAGGTAAGCTCTGTAGCCTGTTACCCGTATTaGCTCAAGGCCTTTGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: QHFSMATSHSISSKVSSVACYPY*LKAFGG Trigger: TCCCCCAAAGGCCTTGAGTCAATACGGGTAACAGGC...TACAGAGCTTACCTTTGACGATATTGAATGTGATGTAGCCATAGAGAAGTGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR GCA 90 bp | CAGCACTTCTCTATGGCTACATCACATTCAATATCGTCAAAGGTAAGCTCTGTAGCATGGCTGGGATTCTaGCTCCTGTCTTCCCTGAGA | + |
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Preference number: 4 (lower is better) Translates to: QHFSMATSHSISSKVSSVAWLGF*LLSSLR Trigger: TCTCAGGGAAGACAGGAGGCAGAATCCCAGCCATGC...TACAGAGCTTACCTTTGACGATATTGAATGTGATGTAGCCATAGAGAAGTGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CCA 90 bp | CACACCATACTTCCGCTTCTATACTCAAGGAACCTGCCATGGCATCAATATTATCCCGGGCAGTTTTTCTaGCTCTTCACCTTTGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: HTILPLLYSRNLPWHQYYPGQFF*LFTFAC Trigger: GCAAGCAAAGGTGAAGAGCCAGAAAAACTGCCCGGG...ATAATATTGATGCCATGGCAGGTTCCTTGAGTATAGAAGCGGAAGTATGGTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CCA 90 bp | TTATCTGAGCTTATACCAACAGGCCCATATAGTTACAGCCAAAATTATGCACTGAGCGGCAAGCTTGTGTaGGCAGTTGGCCACCATGTG | + |
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Preference number: 4 (lower is better) Translates to: LSELIPTGPYSYSQNYALSGKLV*AVGHHV Trigger: CACATGGTGGCCAACTGCCCACACAAGCTTGCCGCT...CAGTGCATAATTTTGGCTGTAACTATATGGGCCTGTTGGTATAAGCTCAGATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR TCA 90 bp | CAGCACTTCTCTATGGCTACATCACATTCAATATCGTCAAAGGTAAGCTCTGTATGGCCACCATGTGCATaGTGCTCTGACAGTAATGGC | + |
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Preference number: 4 (lower is better) Translates to: QHFSMATSHSISSKVSSVWPPCA*CSDSNG Trigger: GCCATTACTGTCAGAGCATCATGCACATGGTGGCCA...TACAGAGCTTACCTTTGACGATATTGAATGTGATGTAGCCATAGAGAAGTGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR TCA 90 bp | CACACCATACTTCCGCTTCTATACTCAAGGAACCTGCCATGGCATCAATATTATGTGCTCTGCCATTTCTaGCTTCACCTCCTGAGGAAA | + |
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Preference number: 4 (lower is better) Translates to: HTILPLLYSRNLPWHQYYVLCHF*LHLLRK Trigger: TTTCCTCAGGAGGTGAAGTCAGAAATGGCAGAGCAC...ATAATATTGATGCCATGGCAGGTTCCTTGAGTATAGAAGCGGAAGTATGGTGTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CCA 90 bp | CACACCATACTTCCGCTTCTATACTCAAGGAACCTGCCATGGCATCAATATTATTTGAACCATTTACAGTaGCCAGTGCCATGCAGAACC | + |
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Preference number: 4 (lower is better) Translates to: HTILPLLYSRNLPWHQYYLNHLQ*PVPCRT Trigger: GGTTCTGCATGGCACTGGCCACTGTAAATGGTTCAA...ATAATATTGATGCCATGGCAGGTTCCTTGAGTATAGAAGCGGAAGTATGGTGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CCA 90 bp | TATGAAACCATCTCAAATGCTTCACATGGATTTTCAATGCTTAGAGATGCCCAAGCAGAGCTGCATGGCTaGGATTCTGCCTCCTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: YETISNASHGFSMLRDAQAELHG*DSASCL Trigger: AAGACAGGAGGCAGAATCCCAGCCATGCAGCTCTGC...TTGGGCATCTCTAAGCATTGAAAATCCATGTGAAGCATTTGAGATGGTTTCATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR TCA 90 bp | TACAGCCAAAATTATGCACTGCAATCCCTTGGTACCTTCTTGAAGATGTTTCAATCTGACTTCACCTCCTaGGGAAACAGTACTGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: YSQNYALQSLGTFLKMFQSDFTS*GNSTVQ Trigger: CTGCACAGTACTGTTTCCTCAGGAGGTGAAGTCAGA...TTGAAACATCTTCAAGAAGGTACCAAGGGATTGCAGTGCATAATTTTGGCTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR CAA 72 bp | CTCCGTAGAATGTGTCTCATGAGTCACGATGCTTTCTaGTTTGATTATCTGAGCTTATACCAACAGGCCCAT | + |
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Preference number: 4 (lower is better) Translates to: LRRMCLMSHDAF*FDYLSLYQQAH Trigger: ATGGGCCTGTTGGTATAAGCTCAGATAATCAAACAAGAAAGCATCGTGACTCATGAGACACATTCTACGGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CCA 90 bp | ATTAAAAGCGTCTGTACCAGAGAATTATCAGCAACCTGCAGGCTGCAGCAGCATAAATGTAAATTCCACTaGCTCTCCTTCTTTCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: IKSVCTRELSATCRLQQHKCKFH*LSFFQA Trigger: AGCTTGAAAGAAGGAGAGCCAGTGGAATTTACATTT...ATGCTGCTGCAGCCTGCAGGTTGCTGATAATTCTCTGGTACAGACGCTTTTAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CCA 90 bp | TACAGCCAAAATTATGCACTGCAATCCCTTGGTACCTTCTTGAAGATGTTTCAACTGCAAACGCTTTCGTaGAAGAAACTTCTTGGGGTG | + |
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Preference number: 4 (lower is better) Translates to: YSQNYALQSLGTFLKMFQLQTLS*KKLLGV Trigger: CACCCCAAGAAGTTTCTTCCACGAAAGCGTTTGCAG...TTGAAACATCTTCAAGAAGGTACCAAGGGATTGCAGTGCATAATTTTGGCTGTA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CCA 90 bp | TTATCTGAGCTTATACCAACAGGCCCATATAGTTACAGCCAAAATTATGCACTGATCTTGGAATCATCCTaGACTCTTCTTCTCGCACAG | + |
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Preference number: 4 (lower is better) Translates to: LSELIPTGPYSYSQNYALILESS*TLLLAQ Trigger: CTGTGCGAGAAGAAGAGTCCAGGATGATTCCAAGAT...CAGTGCATAATTTTGGCTGTAACTATATGGGCCTGTTGGTATAAGCTCAGATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR GCA 90 bp | TATGAAACCATCTCAAATGCTTCACATGGATTTTCAATGCTTAGAGATGCCCAAGTTTTGCTCTCCTATTaGTGCAAACGCTTTCGTGGA | + |
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Preference number: 4 (lower is better) Translates to: YETISNASHGFSMLRDAQVLLSY*CKRFRG Trigger: TCCACGAAAGCGTTTGCAGCAATAGGAGAGCAAAAC...TTGGGCATCTCTAAGCATTGAAAATCCATGTGAAGCATTTGAGATGGTTTCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CCA 90 bp | TACAGCCAAAATTATGCACTGCAATCCCTTGGTACCTTCTTGAAGATGTTTCAAACAGTTGTAGCATCTTaGAATCATCCTGGACTCTTC | + |
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Preference number: 4 (lower is better) Translates to: YSQNYALQSLGTFLKMFQTVVAS*NHPGLF Trigger: GAAGAGTCCAGGATGATTCCAAGATGCTACAACTGT...TTGAAACATCTTCAAGAAGGTACCAAGGGATTGCAGTGCATAATTTTGGCTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| 3UTR CAA 72 bp | TTTAGTAAGTCGGTCTGGTTAGATGCTGAAAAGAAGTaGACTGCACCCATAAGGTCTATATTCAAGTGTTTC | + |
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Preference number: 4 (lower is better) Translates to: FSKSVWLDAEKK*TAPIRSIFKCF Trigger: GAAACACTTGAATATAGACCTTATGGGTGCAGTCAACTTCTTTTCAGCATCTAACCAGACCGACTTACTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS TCA 90 bp | CATCTTGGAATCATCCTGGACTCTTCTTCTCGCACAGTCCACATCTaGTCCATCAGTAAATCCTGCCGTCTCCACCTATCTCCCTTTGGC | + |
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Preference number: 5 (lower is better) Translates to: HLGIILDSSSRTVHI*SISKSCRLHLSPFG Trigger: GCCAAAGGGAGATAGGTGGAGACGGCAGGATTTACTGATGGATCAGATGTGGACTGTGCGAGAAGAAGAGTCCAGGATGATTCCAAGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CAA 90 bp | CACACCATACTTCCGCTTCTATACTCAAGGAACCTGCCATGGCATCAATATTATGGCCTGTTACCCGTATaGACTCAAGGCCTTTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: HTILPLLYSRNLPWHQYYGLLPV*TQGLWG Trigger: CCCCCAAAGGCCTTGAGTCAATACGGGTAACAGGCC...ATAATATTGATGCCATGGCAGGTTCCTTGAGTATAGAAGCGGAAGTATGGTGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CAA 90 bp | TTATCTGAGGAAGAGTATGTGCTTTTATCTACATACACACACACACACACACACCCCCTCCCACTTCTCTaGGTGCCGCAGAGCTGCATG | + |
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Preference number: 5 (lower is better) Translates to: LSEEEYVLLSTYTHTHTHPLPLL*VPQSCM Trigger: CATGCAGCTCTGCGGCACCAAGAGAAGTGGGAGGGG...GTGTGTGTGTGTGTGTGTGTATGTAGATAAAAGCACATACTCTTCCTCAGATAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CAA 90 bp | CAAGGTGTGCTCTGTGGTAGCTGGGAGGTAGCCATGTGCTGTAAACAGAATTTTCTTTGGCTTTCTCTTTaGCAGGGTCTTCCCTTTAGG | + |
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Preference number: 5 (lower is better) Translates to: QGVLCGSWEVAMCCKQNFLWLSL*QGLPFR Trigger: CCTAAAGGGAAGACCCTGCAAAAGAGAAAGCCAAAG...AAAATTCTGTTTACAGCACATGGCTACCTCCCAGCTACCACAGAGCACACCTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CAA 90 bp | CACACCATACTTCCGCTTCTATACTCAAGGAACCTGCCATGGCATCAATATTATTCCACCTATCTCCCTTaGGCTTTCTCTTTTGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: HTILPLLYSRNLPWHQYYSTYLP*AFSFAG Trigger: CCCTGCAAAAGAGAAAGCCAAAGGGAGATAGGTGGA...ATAATATTGATGCCATGGCAGGTTCCTTGAGTATAGAAGCGGAAGTATGGTGTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CAA 90 bp | ATCTATCACACACCATACTTCCGCTTCTATACTCAAGGAACCTGCCATGGCATCCCTTCCATGAATAGTTaGCTTTGGTGTACAAATACA | + |
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Preference number: 5 (lower is better) Translates to: IYHTPYFRFYTQGTCHGIPSMNS*LWCTNT Trigger: TGTATTTGTACACCAAAGCAAACTATTCATGGAAGG...GATGCCATGGCAGGTTCCTTGAGTATAGAAGCGGAAGTATGGTGTGTGATAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CAA 90 bp | TACAGCCAAAATTATGCACTGCAATCCCTTGGTACCTTCTTGAAGATGTTTCAACACAGTTGTAGCATCTaGGAATCATCCTGGACTCTT | + |
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Preference number: 5 (lower is better) Translates to: YSQNYALQSLGTFLKMFQHSCSI*ESSWTL Trigger: AAGAGTCCAGGATGATTCCAAGATGCTACAACTGTG...TTGAAACATCTTCAAGAAGGTACCAAGGGATTGCAGTGCATAATTTTGGCTGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS-3UTR CAA 90 bp | TACAGCCAAAATTATGCACTGCAATCCCTTGGTACCTTCTTGAAGATGTTTCAAAGGCCCCTTTTTGTTTaGCTCTCCTATTGCTGCAAA | + |
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Preference number: 5 (lower is better) Translates to: YSQNYALQSLGTFLKMFQRPLFV*LSYCCK Trigger: TTTGCAGCAATAGGAGAGCAAAACAAAAAGGGGCCT...TTGAAACATCTTCAAGAAGGTACCAAGGGATTGCAGTGCATAATTTTGGCTGTA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS CCA 72 bp | CTGAGAACTGGCGGGCAGCTGAGCGGCAAGCTTGTGTaGGCAGTTGGCCACCATGTGCATGATGCTCTGACA | + |
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Preference number: 6 (lower is better) Translates to: LRTGGQLSGKLV*AVGHHVHDALT Trigger: TGTCAGAGCATCATGCACATGGTGGCCAACTGCCCACACAAGCTTGCCGCTCAGCTGCCCGCCAGTTCTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS CCA 72 bp | CGAGACCACCACAGTTGTAGCATCTTGGAATCATCCTaGACTCTTCTTCTCGCACAGTCCACATCTGATCCA | + |
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Preference number: 6 (lower is better) Translates to: RDHHSCSILESS*TLLLAQSTSDP Trigger: TGGATCAGATGTGGACTGTGCGAGAAGAAGAGTCCAGGATGATTCCAAGATGCTACAACTGTGGTGGTCTCG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS CAA 72 bp | CTGCCGTCTCCACCTATCTCCCTTTGGCTTTCTCTTTaGCAGGGTCTTCCCTTTAGGTCTTCTTTCACTTCC | + |
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Preference number: 6 (lower is better) Translates to: LPSPPISLWLSL*QGLPFRSSFTS Trigger: GGAAGTGAAAGAAGACCTAAAGGGAAGACCCTGCAAAAGAGAAAGCCAAAGGGAGATAGGTGGAGACGGCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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| CDS TCA 72 bp | ATCATCCTGGACTCTTCTTCTCGCACAGTCCACATCTaGTCCATCAGTAAATCCTGCCGTCTCCACCTATCT | + |
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Preference number: 6 (lower is better) Translates to: IILDSSSRTVHI*SISKSCRLHLS Trigger: AGATAGGTGGAGACGGCAGGATTTACTGATGGATCAGATGTGGACTGTGCGAGAAGAAGAGTCCAGGATGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079390.7 |
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