Pregenerated sensors for LIN28A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050966Ensembl transcript IDs: ENSMUST00000051674.3
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGTTCCTTTGTCTCATCCTTTCCTTCCCTCCAAGGAAAGACAGGGTaGCACTGGGAACCCCGGCCTGAGACACGGCAGTGCAAGCTACCC | + |
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Preference number: 1 (lower is better) Translates to: SSFVSSFPSLQGKTG*HWEPRPETRQCKLP Trigger: GGGTAGCTTGCACTGCCGTGTCTCAGGCCGGGGTTCCCAGTGTCACCCTGTCTTTCCTTGGAGGGAAGGAAAGGATGAGACAAAGGAACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR CCA 90 bp | TACGAGGGAGAAGAGGGGCTGTCTGAAGGTCACTGTGGTCCAGAATaGGAGACACAGGAGGAACAGGTAAGGATAAGCCATGGTCCCAGA | + |
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Preference number: 1 (lower is better) Translates to: YEGEEGLSEGHCGPE*ETQEEQVRISHGPR Trigger: TCTGGGACCATGGCTTATCCTTACCTGTTCCTCCTGTGTCTCCCATTCTGGACCACAGTGACCTTCAGACAGCCCCTCTTCTCCCTCGTA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR TCA 90 bp | CTCATGAGTCTCTCAGAAAGCCAAGATTGTGAAAGGCTAAGGAGTTaGGTCCCTGCCTCATGTTCCCATGCCTGGACAGCACAGTGTGGG | + |
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Preference number: 1 (lower is better) Translates to: LMSLSESQDCERLRS*VPASCSHAWTAQCG Trigger: CCCACACTGTGCTGTCCAGGCATGGGAACATGAGGCAGGGACTCAACTCCTTAGCCTTTCACAATCTTGGCTTTCTGAGAGACTCATGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR TCA 90 bp | GCCACTGAGGCCCATACTCATGAGTCTCTCAGAAAGCCAAGATTGTaGAAGGCTAAGGAGTTGAGTCCCTGCCTCATGTTCCCATGCCTG | + |
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Preference number: 1 (lower is better) Translates to: ATEAHTHESLRKPRL*KAKELSPCLMFPCL Trigger: CAGGCATGGGAACATGAGGCAGGGACTCAACTCCTTAGCCTTTCACAATCTTGGCTTTCTGAGAGACTCATGAGTATGGGCCTCAGTGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR GCA 90 bp | GCAAGCTACCCACGCAACCCACCCTTACCCCCACTTTCTCCACTCTaGAGATTGATGCCTCTTTCCTTAAACTCCCCATTAGCCAAAGAA | + |
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Preference number: 1 (lower is better) Translates to: ASYPRNPPLPPLSPL*RLMPLSLNSPLAKE Trigger: TTCTTTGGCTAATGGGGAGTTTAAGGAAAGAGGCATCAATCTGCAGAGTGGAGAAAGTGGGGGTAAGGGTGGGTTGCGTGGGTAGCTTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR CAA 90 bp | GGCCCAGAAAGGGCTGGGAGTGAGGTGTGGGCAGCAGGTCAGCAGTaGTCTCCCCAACCACCCTCTTTGCCTGTCATCACAACCCGTTGC | + |
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Preference number: 2 (lower is better) Translates to: GPERAGSEVWAAGQQ*SPQPPSLPVITTRC Trigger: GCAACGGGTTGTGATGACAGGCAAAGAGGGTGGTTGGGGAGACAACTGCTGACCTGCTGCCCACACCTCACTCCCAGCCCTTTCTGGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR-3UTR CCA 90 bp | GTGCAGAAGGCAGGAGGAGAGCCAGGAACCCGAGGCTCTCTATCTCCAGCTACAACCTCGCCCTGCTCCTaGGAGTCCCTTCCCCAGAAC | + |
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Preference number: 2 (lower is better) Translates to: VQKAGGEPGTRGSLSPATTSPCS*ESLPQN Trigger: GTTCTGGGGAAGGGACTCCCAGGAGCAGGGCGAGGT...TGTAGCTGGAGATAGAGAGCCTCGGGTTCCTGGCTCTCCTCCTGCCTTCTGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR-3UTR TCA 90 bp | GTGCAGAAGGCAGGAGGAGAGCCAGGAACCCGAGGCTCTCTATCTCCAGCTACACAAGGAAAGACAGGGTaGCACTGGGAACCCCGGCCT | + |
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Preference number: 2 (lower is better) Translates to: VQKAGGEPGTRGSLSPATQGKTG*HWEPRP Trigger: AGGCCGGGGTTCCCAGTGTCACCCTGTCTTTCCTTG...TGTAGCTGGAGATAGAGAGCCTCGGGTTCCTGGCTCTCCTCCTGCCTTCTGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR-3UTR TCA 90 bp | GTGCAGAAGGCAGGAGGAGAGCCAGGAACCCGAGGCTCTCTATCTCCAGCTACAGAAAGGCTAAGGAGTTaGGTCCCTGCCTCATGTTCC | + |
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Preference number: 2 (lower is better) Translates to: VQKAGGEPGTRGSLSPATERLRS*VPASCS Trigger: GGAACATGAGGCAGGGACTCAACTCCTTAGCCTTTC...TGTAGCTGGAGATAGAGAGCCTCGGGTTCCTGGCTCTCCTCCTGCCTTCTGCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR-3UTR CCA 90 bp | GTAAATGAGCCTAAGTTTTCTTACGAGGGAGAAGAGGGGCTGTCTGAAGGTCACGCTGGGAGTGAGGTGTaGGCAGCAGGTCAGCAGTTG | + |
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Preference number: 2 (lower is better) Translates to: VNEPKFSYEGEEGLSEGHAGSEV*AAGQQL Trigger: CAACTGCTGACCTGCTGCCCACACCTCACTCCCAGC...GTGACCTTCAGACAGCCCCTCTTCTCCCTCGTAAGAAAACTTAGGCTCATTTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR-3UTR TCA 90 bp | GTGCAGAAGGCAGGAGGAGAGCCAGGAACCCGAGGCTCTCTATCTCCAGCTACATGTAATCGGCAAAAATaGGGTAGTTCAACAGGCTGT | + |
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Preference number: 2 (lower is better) Translates to: VQKAGGEPGTRGSLSPATCNRQK*GSSTGC Trigger: ACAGCCTGTTGAACTACCTCATTTTTGCCGATTACA...TGTAGCTGGAGATAGAGAGCCTCGGGTTCCTGGCTCTCCTCCTGCCTTCTGCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR-3UTR GCA 90 bp | GTAAATGAGCCTAAGTTTTCTTACGAGGGAGAAGAGGGGCTGTCTGAAGGTCACGATGGTGTTGTCTGGTaGAGAGCTTTCTGTCAAAGA | + |
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Preference number: 2 (lower is better) Translates to: VNEPKFSYEGEEGLSEGHDGVVW*RAFCQR Trigger: TCTTTGACAGAAAGCTCTGCACCAGACAACACCATC...GTGACCTTCAGACAGCCCCTCTTCTCCCTCGTAAGAAAACTTAGGCTCATTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR-3UTR CCA 90 bp | GTAAATGAGCCTAAGTTTTCTTACGAGGGAGAAGAGGGGCTGTCTGAAGGTCACAGGATGGATCTGGTATaGAAAGTTCCTCTTGTGCCT | + |
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Preference number: 2 (lower is better) Translates to: VNEPKFSYEGEEGLSEGHRMDLV*KVPLVP Trigger: AGGCACAAGAGGAACTTTCCATACCAGATCCATCCT...GTGACCTTCAGACAGCCCCTCTTCTCCCTCGTAAGAAAACTTAGGCTCATTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR-3UTR GCA 90 bp | AATCTGGCAAAAGGATGGATCTGGTATGGAAAGTTCCTCTTGTGCCTTTCACCTCCACTTTCTCCACTCTaGAGATTGATGCCTCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: NLAKGWIWYGKFLLCLSPPLSPL*RLMPLS Trigger: GGAAAGAGGCATCAATCTGCAGAGTGGAGAAAGTGG...AGGTGAAAGGCACAAGAGGAACTTTCCATACCAGATCCATCCTTTTGCCAGATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR-3UTR CCA 90 bp | AATCTGGCAAAAGGATGGATCTGGTATGGAAAGTTCCTCTTGTGCCTTTCACCTAAATTAAAATCCCATTaGCCCAGAAAGGGCTGGGAG | + |
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Preference number: 2 (lower is better) Translates to: NLAKGWIWYGKFLLCLSPKLKSH*PRKGWE Trigger: CTCCCAGCCCTTTCTGGGCCAATGGGATTTTAATTT...AGGTGAAAGGCACAAGAGGAACTTTCCATACCAGATCCATCCTTTTGCCAGATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR-3UTR GCA 90 bp | AATCTGGCAAAAGGATGGATCTGGTATGGAAAGTTCCTCTTGTGCCTTTCACCTACAAAAGCCTTCACTTaGTTTCAGATAGAGTGTGGT | + |
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Preference number: 2 (lower is better) Translates to: NLAKGWIWYGKFLLCLSPTKAFT*FQIECG Trigger: ACCACACTCTATCTGAAAGCAAGTGAAGGCTTTTGT...AGGTGAAAGGCACAAGAGGAACTTTCCATACCAGATCCATCCTTTTGCCAGATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR GCA 72 bp | GAAGCGGCACCTGCAATCCCTGCACAGGGGACTCTGTaGAGAAGGCAGGAGGAGAGCCAGGAACCCGAGGCT | + |
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Preference number: 3 (lower is better) Translates to: EAAPAIPAQGTL*RRQEESQEPEA Trigger: AGCCTCGGGTTCCTGGCTCTCCTCCTGCCTTCTGCACAGAGTCCCCTGTGCAGGGATTGCAGGTGCCGCTTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR CCA 72 bp | AATAAGCACGGTGTGAAAATAACCTCGCCCTGCTCCTaGGAGTCCCTTCCCCAGAACATAGTAGCTGGAGGG | + |
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Preference number: 3 (lower is better) Translates to: NKHGVKITSPCS*ESLPQNIVAGG Trigger: CCCTCCAGCTACTATGTTCTGGGGAAGGGACTCCCAGGAGCAGGGCGAGGTTATTTTCACACCGTGCTTATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR CCA 72 bp | ATGGGAGACACAGGAGGAACAGGTAAGGATAAGCCATaGTCCCAGAGGTTCACTTTGAGAAGAGGACCGCAC | + |
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Preference number: 3 (lower is better) Translates to: MGDTGGTGKDKP*SQRFTLRRGPH Trigger: GTGCGGTCCTCTTCTCAAAGTGAACCTCTGGGACCATGGCTTATCCTTACCTGTTCCTCCTGTGTCTCCCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR TCA 72 bp | CTCTCAGAAAGCCAAGATTGTGAAAGGCTAAGGAGTTaGGTCCCTGCCTCATGTTCCCATGCCTGGACAGCA | + |
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Preference number: 3 (lower is better) Translates to: LSESQDCERLRS*VPASCSHAWTA Trigger: TGCTGTCCAGGCATGGGAACATGAGGCAGGGACTCAACTCCTTAGCCTTTCACAATCTTGGCTTTCTGAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR CCA 72 bp | CTGCTCCTGGGAGTCCCTTCCCCAGAACATAGTAGCTaGAGGGGTAGGTTCAGTAATCTTGGTTTGACACTT | + |
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Preference number: 3 (lower is better) Translates to: LLLGVPSPEHSS*RGRFSNLGLTL Trigger: AAGTGTCAAACCAAGATTACTGAACCTACCCCTCCAGCTACTATGTTCTGGGGAAGGGACTCCCAGGAGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR GCA 72 bp | GTTATGAATAAGCACGGTGTGAAAATAACCTCGCCCTaGTCCTGGGAGTCCCTTCCCCAGAACATAGTAGCT | + |
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Preference number: 3 (lower is better) Translates to: VMNKHGVKITSP*SWESLPQNIVA Trigger: AGCTACTATGTTCTGGGGAAGGGACTCCCAGGAGCAGGGCGAGGTTATTTTCACACCGTGCTTATTCATAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR CCA 72 bp | TGGCAGGCTTCCACTAATCTGGCAAAAGGATGGATCTaGTATGGAAAGTTCCTCTTGTGCCTTTCACCTGGC | + |
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Preference number: 3 (lower is better) Translates to: WQASTNLAKGWI*YGKFLLCLSPG Trigger: GCCAGGTGAAAGGCACAAGAGGAACTTTCCATACCAGATCCATCCTTTTGCCAGATTAGTGGAAGCCTGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR TCA 72 bp | GCCCATACTCATGAGTCTCTCAGAAAGCCAAGATTGTaGAAGGCTAAGGAGTTGAGTCCCTGCCTCATGTTC | + |
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Preference number: 3 (lower is better) Translates to: AHTHESLRKPRL*KAKELSPCLMF Trigger: GAACATGAGGCAGGGACTCAACTCCTTAGCCTTTCACAATCTTGGCTTTCTGAGAGACTCATGAGTATGGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR TCA 72 bp | GGCCCTGTCTCAAAACCACCAACCAAAACTCTTCACTaGGTTAGGGACAAGGAAAGAATGAGGTTCCTGGCT | + |
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Preference number: 3 (lower is better) Translates to: GPVSKPPTKTLH*VRDKERMRFLA Trigger: AGCCAGGAACCTCATTCTTTCCTTGTCCCTAACTCAGTGAAGAGTTTTGGTTGGTGGTTTTGAGACAGGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR GCA 72 bp | GTTCTAGGGTGGTTCCTCCCCACAAAAGCCTTCACTTaGTTTCAGATAGAGTGTGGTAGGAGTTCCTTTGTC | + |
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Preference number: 3 (lower is better) Translates to: VLGWFLPTKAFT*FQIECGRSSFV Trigger: GACAAAGGAACTCCTACCACACTCTATCTGAAAGCAAGTGAAGGCTTTTGTGGGGAGGAACCACCCTAGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR GCA 72 bp | ACACACACATACATACACACTCTCTCTCTCACACCCTaGTGTGCATGGCAGGCTTCCACTAATCTGGCAAAA | + |
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Preference number: 3 (lower is better) Translates to: THTYIHTLSLTP*CAWQASTNLAK Trigger: TTTTGCCAGATTAGTGGAAGCCTGCCATGCACAGCAGGGTGTGAGAGAGAGAGTGTGTATGTATGTGTGTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR-3UTR CAA 90 bp | GTAAATGAGCCTAAGTTTTCTTACGAGGGAGAAGAGGGGCTGTCTGAAGGTCACGTGCACTCCAAATGGTaGGTCTCCATGGTGATCAAA | + |
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Preference number: 3 (lower is better) Translates to: VNEPKFSYEGEEGLSEGHVHSKW*VSMVIK Trigger: TTTGATCACCATGGAGACCAACCATTTGGAGTGCAC...GTGACCTTCAGACAGCCCCTCTTCTCCCTCGTAAGAAAACTTAGGCTCATTTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR TCA 72 bp | ATAGTAGCTGGAGGGGTAGGTTCAGTAATCTTGGTTTaGCACTTGTTTCGCTTCCCGTCTGGCAAGGGAAAT | + |
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Preference number: 3 (lower is better) Translates to: IVAGGVGSVILV*HLFRFPSGKGN Trigger: ATTTCCCTTGCCAGACGGGAAGCGAAACAAGTGTCAAACCAAGATTACTGAACCTACCCCTCCAGCTACTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR CCA 72 bp | TGTGCATGGCAGGCTTCCACTAATCTGGCAAAAGGATaGATCTGGTATGGAAAGTTCCTCTTGTGCCTTTCA | + |
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Preference number: 3 (lower is better) Translates to: CAWQASTNLAKG*IWYGKFLLCLS Trigger: TGAAAGGCACAAGAGGAACTTTCCATACCAGATCCATCCTTTTGCCAGATTAGTGGAAGCCTGCCATGCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR TCA 72 bp | CCAAAACTCTTCACTGAGTTAGGGACAAGGAAAGAATaGGGTTCCTGGCTTCTTCAGAATTTTCACATGGGT | + |
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Preference number: 3 (lower is better) Translates to: PKLFTELGTRKE*GSWLLQNFHMG Trigger: ACCCATGTGAAAATTCTGAAGAAGCCAGGAACCTCATTCTTTCCTTGTCCCTAACTCAGTGAAGAGTTTTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| CDS-3UTR GCA 90 bp | GTGCAGAAGGCAGGAGGAGAGCCAGGAACCCGAGGCTCTCTATCTCCAGCTACACAGATGCCGGCCCCGTaGAGCAGCTGCGGCTCGTCT | + |
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Preference number: 4 (lower is better) Translates to: VQKAGGEPGTRGSLSPATQMPAP*SSCGSS Trigger: AGACGAGCCGCAGCTGCTGCACGGGGCCGGCATCTG...TGTAGCTGGAGATAGAGAGCCTCGGGTTCCTGGCTCTCCTCCTGCCTTCTGCAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| CDS-3UTR CCA 90 bp | GCCTCGGGTTCTAGGGTGGTTCCTCCCCACAAAAGCCTTCACTTGCTTTCAGATCCTTCTCCGCTGCCTTaGCGCAGCCACCTGCAAACT | + |
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Preference number: 4 (lower is better) Translates to: ASGSRVVPPHKSLHLLSDPSPLP*RSHLQT Trigger: AGTTTGCAGGTGGCTGCGCCAAGGCAGCGGAGAAGG...ATCTGAAAGCAAGTGAAGGCTTTTGTGGGGAGGAACCACCCTAGAACCCGAGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| CDS-3UTR TCA 90 bp | GTGCAGAAGGCAGGAGGAGAGCCAGGAACCCGAGGCTCTCTATCTCCAGCTACAAGGCCACCATATGGTTaGTGCTTTGGCAAAAGTGGC | + |
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Preference number: 4 (lower is better) Translates to: VQKAGGEPGTRGSLSPATRPPYG*CFGKSG Trigger: GCCACTTTTGCCAAAGCATCAACCATATGGTGGCCT...TGTAGCTGGAGATAGAGAGCCTCGGGTTCCTGGCTCTCCTCCTGCCTTCTGCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR CAA 72 bp | AGCTATCAACCATCACGCTACAGCAGGGCAGGACACTaGCCACTGAGGCCCATACTCATGAGTCTCTCAGAA | + |
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Preference number: 4 (lower is better) Translates to: SYQPSRYSRAGH*PLRPILMSLSE Trigger: TTCTGAGAGACTCATGAGTATGGGCCTCAGTGGCAAGTGTCCTGCCCTGCTGTAGCGTGATGGTTGATAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR CAA 72 bp | AACCCACCCTTACCCCCACTTTCTCCACTCTGCAGATaGATGCCTCTTTCCTTAAACTCCCCATTAGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: NPPLPPLSPLCR*MPLSLNSPLAK Trigger: TTTGGCTAATGGGGAGTTTAAGGAAAGAGGCATCAATCTGCAGAGTGGAGAAAGTGGGGGTAAGGGTGGGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR CAA 72 bp | CATAGTAGCTGGAGGGGTAGGTTCAGTAATCTTGGTTaGACACTTGTTTCGCTTCCCGTCTGGCAAGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: HSSWRGRFSNLG*TLVSLPVWQGK Trigger: TTTCCCTTGCCAGACGGGAAGCGAAACAAGTGTCAAACCAAGATTACTGAACCTACCCCTCCAGCTACTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| CDS-3UTR CCA 90 bp | CCAGAACATAGTAGCTGGAGGGGTAGGTTCAGTAATCTTGGTTTGACACTTGTTAGCACCTGTCTCCTTTaGATCTTCGCTTCTGCATGT | + |
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Preference number: 4 (lower is better) Translates to: PEHSSWRGRFSNLGLTLVSTCLL*IFASAC Trigger: ACATGCAGAAGCGAAGATCCAAAGGAGACAGGTGCT...AACAAGTGTCAAACCAAGATTACTGAACCTACCCCTCCAGCTACTATGTTCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| 3UTR CAA 72 bp | ACAGCACAGTGTGGGAATAAGGGTACTGGTCTTAAGTaGCATTCTTACTGGGATAACTCAGTGGCAGTGTAC | + |
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Preference number: 4 (lower is better) Translates to: TAQCGNKGTGLK*HSYWDNSVAVY Trigger: GTACACTGCCACTGAGTTATCCCAGTAAGAATGCAACTTAAGACCAGTACCCTTATTCCCACACTGTGCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| CDS-3UTR GCA 90 bp | CCAGAACATAGTAGCTGGAGGGGTAGGTTCAGTAATCTTGGTTTGACACTTGTTTTGGATCTTCGCTTCTaGATGTTCTTCCCTTTTGGC | + |
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Preference number: 4 (lower is better) Translates to: PEHSSWRGRFSNLGLTLVLDLRF*MFFPFG Trigger: GCCAAAAGGGAAGAACATGCAGAAGCGAAGATCCAA...AACAAGTGTCAAACCAAGATTACTGAACCTACCCCTCCAGCTACTATGTTCTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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| CDS-3UTR CAA 90 bp | AATCTGGCAAAAGGATGGATCTGGTATGGAAAGTTCCTCTTGTGCCTTTCACCTGAGGCCACCATATGGTaGATGCTTTGGCAAAAGTGG | + |
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Preference number: 5 (lower is better) Translates to: NLAKGWIWYGKFLLCLSPEATIW*MLWQKW Trigger: CCACTTTTGCCAAAGCATCAACCATATGGTGGCCTC...AGGTGAAAGGCACAAGAGGAACTTTCCATACCAGATCCATCCTTTTGCCAGATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051674.3 |
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