Pregenerated sensors for LIMS2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024395Ensembl transcript IDs: ENSMUST00000025254.9, ENSMUST00000223753.2, ENSMUST00000224328.2, ENSMUST00000225404.2
Found 95 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GAACGGGCTGGGCTGGAGCAGAAGTGGGAGGTGGCTAGCAGGACCTaGGGCAGGGGGATGAGTGCTAAGGTACTGCAGGCAGGCCAGGCG | + |
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Preference number: 1 (lower is better) Translates to: ERAGLEQKWEVASRT*GRGMSAKVLQAGQA Trigger: CGCCTGGCCTGCCTGCAGTACCTTAGCACTCATCCCCCTGCCCCAGGTCCTGCTAGCCACCTCCCACTTCTGCTCCAGCCCAGCCCGTTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR CCA 90 bp | GCCAAGCCCAAGGGTCACACGAGGGCTGAAACTCTCCTGGGAGAGTaGAGAGGAGAGGCATCGGGTTGGGATCTGCGGGTCAAGCAAGTG | + |
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Preference number: 1 (lower is better) Translates to: AKPKGHTRAETLLGE*RGEASGWDLRVKQV Trigger: CACTTGCTTGACCCGCAGATCCCAACCCGATGCCTCTCCTCTCCACTCTCCCAGGAGAGTTTCAGCCCTCGTGTGACCCTTGGGCTTGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR CCA 90 bp | GCTTCTCAGCCAAGCCCAAGGGTCACACGAGGGCTGAAACTCTCCTaGGAGAGTGGAGAGGAGAGGCATCGGGTTGGGATCTGCGGGTCA | + |
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Preference number: 1 (lower is better) Translates to: ASQPSPRVTRGLKLS*ESGEERHRVGICGS Trigger: TGACCCGCAGATCCCAACCCGATGCCTCTCCTCTCCACTCTCCCAGGAGAGTTTCAGCCCTCGTGTGACCCTTGGGCTTGGCTGAGAAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR CCA 90 bp | TCCCCATTGCTGTTGACGATGCGCTCTGTGGGGGCAAACCGGGCCTaGCAGCGCTGGCACATGGCATCGGCCAAACACTCAGACATGTTG | + |
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Preference number: 1 (lower is better) Translates to: SPLLLTMRSVGANRA*QRWHMASAKHSDML Trigger: CAACATGTCTGAGTGTTTGGCCGATGCCATGTGCCAGCGCTGCCAGGCCCGGTTTGCCCCCACAGAGCGCATCGTCAACAGCAATGGGGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR CCA 90 bp | CCACTTGTGGGTCTTCGATGGCCAGGGCAATGTGCCCCTGGGAAGTaGGACCCCCACACTTGGTGGGCAGCTGAGACACTTTCTATGAGG | + |
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Preference number: 1 (lower is better) Translates to: PLVGLRWPGQCAPGK*DPHTWWAAETLSMR Trigger: CCTCATAGAAAGTGTCTCAGCTGCCCACCAAGTGTGGGGGTCCCACTTCCCAGGGGCACATTGCCCTGGCCATCGAAGACCCACAAGTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR CCA 90 bp | GCTCGAATAACTGAGAAGGGTGCTTCCATGAAGCCTCTATCTGCGTaGTGCTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAG | + |
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Preference number: 1 (lower is better) Translates to: ARITEKGASMKPLSA*CWPWGWDSFSAKPK Trigger: CTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGCAGATAGAGGCTTCATGGAAGCACCCTTCTCAGTTATTCGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
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| 3UTR CCA 90 bp | GTCAAGCAAGTGACAAATAATCCTGCTCCAGTTTGTTCCTGTCCCTaGAGGTTGTGGGCCCGGGAGGAAATGCCTGTGAGGTGGGTCAGG | + |
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Preference number: 1 (lower is better) Translates to: VKQVTNNPAPVCSCP*RLWAREEMPVRWVR Trigger: CCTGACCCACCTCACAGGCATTTCCTCCCGGGCCCACAACCTCCAGGGACAGGAACAAACTGGAGCAGGATTATTTGTCACTTGCTTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR CCA 90 bp | AGGGCTGAAACTCTCCTGGGAGAGTGGAGAGGAGAGGCATCGGGTTaGGATCTGCGGGTCAAGCAAGTGACAAATAATCCTGCTCCAGTT | + |
|
Preference number: 1 (lower is better) Translates to: RAETLLGEWRGEASG*DLRVKQVTNNPAPV Trigger: AACTGGAGCAGGATTATTTGTCACTTGCTTGACCCGCAGATCCCAACCCGATGCCTCTCCTCTCCACTCTCCCAGGAGAGTTTCAGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR TCA 90 bp | AGTGGAGAGGAGAGGCATCGGGTTGGGATCTGCGGGTCAAGCAAGTaGCAAATAATCCTGCTCCAGTTTGTTCCTGTCCCTGGAGGTTGT | + |
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Preference number: 1 (lower is better) Translates to: SGEERHRVGICGSSK*QIILLQFVPVPGGC Trigger: ACAACCTCCAGGGACAGGAACAAACTGGAGCAGGATTATTTGTCACTTGCTTGACCCGCAGATCCCAACCCGATGCCTCTCCTCTCCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR-3UTR CCA 90 bp | GGCTGTTCGTCGATGGCGAGGTGGCACCGCTGGCAGATGAATTTGCCCAAGCCCGGGGCAAACCGGGCCTaGCAGCGCTGGCACATGGCA | + |
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Preference number: 2 (lower is better) Translates to: GCSSMARWHRWQMNLPKPGANRA*QRWHMA Trigger: TGCCATGTGCCAGCGCTGCCAGGCCCGGTTTGCCCC...GGGCTTGGGCAAATTCATCTGCCAGCGGTGCCACCTCGCCATCGACGAACAGCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR-3UTR TCA 90 bp | TGGTGCTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACGCCTGGGGCAGGGGGATaGGTGCTAAGGTACTGCAGG | + |
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Preference number: 2 (lower is better) Translates to: WCWPWGWDSFSAKPKGHTPGAGG*VLRYCR Trigger: CCTGCAGTACCTTAGCACTCATCCCCCTGCCCCAGG...CGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCACCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR-3UTR TCA 90 bp | AGGGTCACACGAGGGCTGAAACTCTCCTGGGAGAGTGGAGAGGAGAGGCATCGGGGGAGGAAATGCCTGTaGGGTGGGTCAGGCCTCAGC | + |
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Preference number: 2 (lower is better) Translates to: RVTRGLKLSWESGEERHRGRKCL*GGSGLS Trigger: GCTGAGGCCTGACCCACCTCACAGGCATTTCCTCCC...CCGATGCCTCTCCTCTCCACTCTCCCAGGAGAGTTTCAGCCCTCGTGTGACCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR-3UTR CCA 90 bp | GGTGCTTCCATGAAGCCTCTATCTGCGTGGTGCTGGCCCTGGGGTTGGGACAGCACTCTCCTGGGAGAGTaGAGAGGAGAGGCATCGGGT | + |
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Preference number: 2 (lower is better) Translates to: GASMKPLSAWCWPWGWDSTLLGE*RGEASG Trigger: ACCCGATGCCTCTCCTCTCCACTCTCCCAGGAGAGT...GCTGTCCCAACCCCAGGGCCAGCACCACGCAGATAGAGGCTTCATGGAAGCACC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
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| 3UTR-3UTR CCA 90 bp | CGGCAGAGGTGCCTGCCTGCGTTCTTCACAAAGCCCAGGTCAGCCAGCTCCACAGAGTCCCTCGGGAAATaGCCGGAAGCACTGTGCACA | + |
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Preference number: 2 (lower is better) Translates to: RQRCLPAFFTKPRSASSTESLGK*PEALCT Trigger: TGTGCACAGTGCTTCCGGCCATTTCCCGAGGGACTC...TGTGGAGCTGGCTGACCTGGGCTTTGTGAAGAACGCAGGCAGGCACCTCTGCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR-3UTR GCA 90 bp | CTGTTCGTCGATGGCGAGGTGGCACCGCTGGCAGATGAATTTGCCCAAGCCCTTCGGAAGCAGCCAGGATaGCAGTTGGCGTTCATGGCC | + |
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Preference number: 2 (lower is better) Translates to: LFVDGEVAPLADEFAQALRKQPG*QLAFMA Trigger: GGCCATGAACGCCAACTGGCATCCTGGCTGCTTCCG...AAGGGCTTGGGCAAATTCATCTGCCAGCGGTGCCACCTCGCCATCGACGAACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR-3UTR CCA 90 bp | GCCCCTGGGAAGTGGGACCCCCACACTTGGTGGGCAGCTGAGACACTTTCTATGACTCTCCTGGGAGAGTaGAGAGGAGAGGCATCGGGT | + |
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Preference number: 2 (lower is better) Translates to: APGKWDPHTWWAAETLSMTLLGE*RGEASG Trigger: ACCCGATGCCTCTCCTCTCCACTCTCCCAGGAGAGT...CATAGAAAGTGTCTCAGCTGCCCACCAAGTGTGGGGGTCCCACTTCCCAGGGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR-3UTR TCA 90 bp | TTCACAGTACTTCCGGCCCTCAAACTCGTAGAAGAGTCCCTCGGGAAATGGCCGGTTCCCCATTGCTGTTaGCGATGCGCTCTGTGGGGG | + |
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Preference number: 2 (lower is better) Translates to: FTVLPALKLVEESLGKWPVPHCC*RCALWG Trigger: CCCCCACAGAGCGCATCGTCAACAGCAATGGGGAAC...CGGCCATTTCCCGAGGGACTCTTCTACGAGTTTGAGGGCCGGAAGTACTGTGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR-3UTR CCA 90 bp | GTTGGCGTTCATGGCCTTGATCACGCGGCCAATGACAAATTCACCACAGAATCCCGGGCCTGGCAGCGCTaGCACATGGCATCGGCCAAA | + |
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Preference number: 2 (lower is better) Translates to: VGVHGLDHAANDKFTTESRAWQR*HMASAK Trigger: TTTGGCCGATGCCATGTGCCAGCGCTGCCAGGCCCG...GGATTCTGTGGTGAATTTGTCATTGGCCGCGTGATCAAGGCCATGAACGCCAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR CAA 90 bp | CAAGTGACAAATAATCCTGCTCCAGTTTGTTCCTGTCCCTGGAGGTaGTGGGCCCGGGAGGAAATGCCTGTGAGGTGGGTCAGGCCTCAG | + |
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Preference number: 2 (lower is better) Translates to: QVTNNPAPVCSCPWR*WAREEMPVRWVRPQ Trigger: CTGAGGCCTGACCCACCTCACAGGCATTTCCTCCCGGGCCCACAACCTCCAGGGACAGGAACAAACTGGAGCAGGATTATTTGTCACTTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR-3UTR CCA 90 bp | GTGCCCCTGGGAAGTGGGACCCCCACACTTGGTGGGCAGCTGAGACACTTTCTACTACATAGCCCGAGGTaGACTGGAAGCAGAAAGGAT | + |
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Preference number: 2 (lower is better) Translates to: VPLGSGTPTLGGQLRHFLLHSPR*TGSRKD Trigger: ATCCTTTCTGCTTCCAGTCCACCTCGGGCTATGTAG...TAGAAAGTGTCTCAGCTGCCCACCAAGTGTGGGGGTCCCACTTCCCAGGGGCAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR-3UTR GCA 90 bp | GGCGTTCATGGCCTTGATCACGCGGCCAATGACAAATTCACCACAGAATCCGCATGGCCGGAAGCACTGTaGACACACAAAGCAGTGCTC | + |
|
Preference number: 2 (lower is better) Translates to: GVHGLDHAANDKFTTESAWPEAL*THKAVL Trigger: GAGCACTGCTTTGTGTGTGCACAGTGCTTCCGGCCA...TGCGGATTCTGTGGTGAATTTGTCATTGGCCGCGTGATCAAGGCCATGAACGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR-3UTR CCA 90 bp | AGTGTAAGCACAAGGACCTACTGTGCTCGAATAACTGAGAAGGGTGCTTCCATGGCGTGGTGCTGGCCCTaGGGTTGGGACAGCTTCTCA | + |
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Preference number: 2 (lower is better) Translates to: SVSTRTYCARITEKGASMAWCWP*GWDSFS Trigger: TGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGC...CATGGAAGCACCCTTCTCAGTTATTCGAGCACAGTAGGTCCTTGTGCTTACACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
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| 3UTR TCA 72 bp | AGTGGGAGGTGGCTAGCAGGACCTGGGGCAGGGGGATaGGTGCTAAGGTACTGCAGGCAGGCCAGGCGGCCG | + |
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Preference number: 3 (lower is better) Translates to: SGRWLAGPGAGG*VLRYCRQARRP Trigger: CGGCCGCCTGGCCTGCCTGCAGTACCTTAGCACTCATCCCCCTGCCCCAGGTCCTGCTAGCCACCTCCCACT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR TCA 72 bp | GTCCCTGGAGGTTGTGGGCCCGGGAGGAAATGCCTGTaGGGTGGGTCAGGCCTCAGCACAGAGGAAAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: VPGGCGPGRKCL*GGSGLSTEERA Trigger: AGCCCTTTCCTCTGTGCTGAGGCCTGACCCACCTCACAGGCATTTCCTCCCGGGCCCACAACCTCCAGGGAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR GCA 72 bp | GTGACCACTTGTGGGTCTTCGATGGCCAGGGCAATGTaGCCCTGGGAAGTGGGACCCCCACACTTGGTGGGC | + |
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Preference number: 3 (lower is better) Translates to: VTTCGSSMARAM*PWEVGPPHLVG Trigger: GCCCACCAAGTGTGGGGGTCCCACTTCCCAGGGGCACATTGCCCTGGCCATCGAAGACCCACAAGTGGTCAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR CCA 72 bp | GGGCTGGAGCAGAAGTGGGAGGTGGCTAGCAGGACCTaGGGCAGGGGGATGAGTGCTAAGGTACTGCAGGCA | + |
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Preference number: 3 (lower is better) Translates to: GLEQKWEVASRT*GRGMSAKVLQA Trigger: TGCCTGCAGTACCTTAGCACTCATCCCCCTGCCCCAGGTCCTGCTAGCCACCTCCCACTTCTGCTCCAGCCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR CCA 72 bp | CTGTTGACGATGCGCTCTGTGGGGGCAAACCGGGCCTaGCAGCGCTGGCACATGGCATCGGCCAAACACTCA | + |
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Preference number: 3 (lower is better) Translates to: LLTMRSVGANRA*QRWHMASAKHS Trigger: TGAGTGTTTGGCCGATGCCATGTGCCAGCGCTGCCAGGCCCGGTTTGCCCCCACAGAGCGCATCGTCAACAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR CCA 72 bp | GGTCTTCGATGGCCAGGGCAATGTGCCCCTGGGAAGTaGGACCCCCACACTTGGTGGGCAGCTGAGACACTT | + |
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Preference number: 3 (lower is better) Translates to: GLRWPGQCAPGK*DPHTWWAAETL Trigger: AAGTGTCTCAGCTGCCCACCAAGTGTGGGGGTCCCACTTCCCAGGGGCACATTGCCCTGGCCATCGAAGACC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR CCA 72 bp | ATGCGCTCTGTGGGGGCAAACCGGGCCTGGCAGCGCTaGCACATGGCATCGGCCAAACACTCAGACATGTTG | + |
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Preference number: 3 (lower is better) Translates to: MRSVGANRAWQR*HMASAKHSDML Trigger: CAACATGTCTGAGTGTTTGGCCGATGCCATGTGCCAGCGCTGCCAGGCCCGGTTTGCCCCCACAGAGCGCAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR-3UTR CAA 90 bp | CGGCAGAGGTGCCTGCCTGCGTTCTTCACAAAGCCCAGGTCAGCCAGCTCCACACAGCCAGGATGCCAGTaGGCGTTCATGGCCTTGATC | + |
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Preference number: 3 (lower is better) Translates to: RQRCLPAFFTKPRSASSTQPGCQ*AFMALI Trigger: GATCAAGGCCATGAACGCCAACTGGCATCCTGGCTG...TGTGGAGCTGGCTGACCTGGGCTTTGTGAAGAACGCAGGCAGGCACCTCTGCCG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR CCA 72 bp | ATGAAGCCTCTATCTGCGTGGTGCTGGCCCTGGGGTTaGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACG | + |
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Preference number: 3 (lower is better) Translates to: MKPLSAWCWPWG*DSFSAKPKGHT Trigger: CGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGCAGATAGAGGCTTCAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
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| 3UTR CCA 72 bp | GCTTCCATGAAGCCTCTATCTGCGTGGTGCTGGCCCTaGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGT | + |
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Preference number: 3 (lower is better) Translates to: ASMKPLSAWCWP*GWDSFSAKPKG Trigger: ACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGCAGATAGAGGCTTCATGGAAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
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| 3UTR-3UTR CAA 90 bp | CGGCAGAGGTGCCTGCCTGCGTTCTTCACAAAGCCCAGGTCAGCCAGCTCCACATTGGCGTTCATGGCCTaGATCACGCGGCCAATGACA | + |
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Preference number: 3 (lower is better) Translates to: RQRCLPAFFTKPRSASSTLAFMA*ITRPMT Trigger: TGTCATTGGCCGCGTGATCAAGGCCATGAACGCCAA...TGTGGAGCTGGCTGACCTGGGCTTTGTGAAGAACGCAGGCAGGCACCTCTGCCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR TCA 72 bp | GCTGTTCGTCGATGGCGAGGTGGCACCGCTGGCAGATaGATTTGCCCAAGCCCTTGGCCTTCTCACGGTTGT | + |
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Preference number: 3 (lower is better) Translates to: AVRRWRGGTAGR*ICPSPWPSHGC Trigger: ACAACCGTGAGAAGGCCAAGGGCTTGGGCAAATTCATCTGCCAGCGGTGCCACCTCGCCATCGACGAACAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR CCA 72 bp | TGGAGGTTGTGGGCCCGGGAGGAAATGCCTGTGAGGTaGGTCAGGCCTCAGCACAGAGGAAAGGGCTACATA | + |
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Preference number: 3 (lower is better) Translates to: WRLWAREEMPVR*VRPQHRGKGYI Trigger: TATGTAGCCCTTTCCTCTGTGCTGAGGCCTGACCCACCTCACAGGCATTTCCTCCCGGGCCCACAACCTCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR CCA 72 bp | ACTGAGAAGGGTGCTTCCATGAAGCCTCTATCTGCGTaGTGCTGGCCCTGGGGTTGGGACAGCTTCTCAGCC | + |
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Preference number: 3 (lower is better) Translates to: TEKGASMKPLSA*CWPWGWDSFSA Trigger: GGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGCAGATAGAGGCTTCATGGAAGCACCCTTCTCAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
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| 3UTR CCA 72 bp | GGGCAATGTGCCCCTGGGAAGTGGGACCCCCACACTTaGTGGGCAGCTGAGACACTTTCTATGAGGTCTCCT | + |
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Preference number: 3 (lower is better) Translates to: GQCAPGKWDPHT*WAAETLSMRSP Trigger: AGGAGACCTCATAGAAAGTGTCTCAGCTGCCCACCAAGTGTGGGGGTCCCACTTCCCAGGGGCACATTGCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR CCA 72 bp | ATGAGGGGCTGTTCGTCGATGGCGAGGTGGCACCGCTaGCAGATGAATTTGCCCAAGCCCTTGGCCTTCTCA | + |
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Preference number: 3 (lower is better) Translates to: MRGCSSMARWHR*QMNLPKPLAFS Trigger: TGAGAAGGCCAAGGGCTTGGGCAAATTCATCTGCCAGCGGTGCCACCTCGCCATCGACGAACAGCCCCTCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR TCA 72 bp | GGCTCTCGGGCTGCTTCACCCCAGAGGTGGGTTTGCTaGCACAGTGTAAGCACAAGGACCTACTGTGCTCGA | + |
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Preference number: 3 (lower is better) Translates to: GSRAASPQRWVC*HSVSTRTYCAR Trigger: TCGAGCACAGTAGGTCCTTGTGCTTACACTGTGTCAGCAAACCCACCTCTGGGGTGAAGCAGCCCGAGAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
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| 3UTR CCA 72 bp | CAATGTGCCCCTGGGAAGTGGGACCCCCACACTTGGTaGGCAGCTGAGACACTTTCTATGAGGTCTCCTGAG | + |
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Preference number: 3 (lower is better) Translates to: QCAPGKWDPHTW*AAETLSMRSPE Trigger: CTCAGGAGACCTCATAGAAAGTGTCTCAGCTGCCCACCAAGTGTGGGGGTCCCACTTCCCAGGGGCACATTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR CCA 72 bp | GCCTCAGCACAGAGGAAAGGGCTACATAGCCCGAGGTaGACTGGAAGCAGAAAGGATGGCATACCGGAGGAA | + |
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Preference number: 3 (lower is better) Translates to: ASAQRKGLHSPR*TGSRKDGIPEE Trigger: TTCCTCCGGTATGCCATCCTTTCTGCTTCCAGTCCACCTCGGGCTATGTAGCCCTTTCCTCTGTGCTGAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR CCA 72 bp | TTCTTGAACATGAGGGGCTGTTCGTCGATGGCGAGGTaGCACCGCTGGCAGATGAATTTGCCCAAGCCCTTG | + |
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Preference number: 3 (lower is better) Translates to: FLNMRGCSSMAR*HRWQMNLPKPL Trigger: CAAGGGCTTGGGCAAATTCATCTGCCAGCGGTGCCACCTCGCCATCGACGAACAGCCCCTCATGTTCAAGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
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| 3UTR CCA 72 bp | ACTCTCCTGGGAGAGTGGAGAGGAGAGGCATCGGGTTaGGATCTGCGGGTCAAGCAAGTGACAAATAATCCT | + |
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Preference number: 3 (lower is better) Translates to: TLLGEWRGEASG*DLRVKQVTNNP Trigger: AGGATTATTTGTCACTTGCTTGACCCGCAGATCCCAACCCGATGCCTCTCCTCTCCACTCTCCCAGGAGAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR TCA 72 bp | GAGAGGCATCGGGTTGGGATCTGCGGGTCAAGCAAGTaGCAAATAATCCTGCTCCAGTTTGTTCCTGTCCCT | + |
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Preference number: 3 (lower is better) Translates to: ERHRVGICGSSK*QIILLQFVPVP Trigger: AGGGACAGGAACAAACTGGAGCAGGATTATTTGTCACTTGCTTGACCCGCAGATCCCAACCCGATGCCTCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| 3UTR TCA 72 bp | CAGTGTAAGCACAAGGACCTACTGTGCTCGAATAACTaGGAAGGGTGCTTCCATGAAGCCTCTATCTGCGTG | + |
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Preference number: 3 (lower is better) Translates to: QCKHKDLLCSNN*EGCFHEASICV Trigger: CACGCAGATAGAGGCTTCATGGAAGCACCCTTCTCAGTTATTCGAGCACAGTAGGTCCTTGTGCTTACACTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
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| CDS-3UTR CCA 90 bp | GCTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACGAGGGGGGGCAAACCGGGCCTaGCAGCGCTGGCACATGGCA | + |
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Preference number: 4 (lower is better) Translates to: AGPGVGTASQPSPRVTRGGANRA*QRWHMA Trigger: TGCCATGTGCCAGCGCTGCCAGGCCCGGTTTGCCCC...CCCTCGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGC 68% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| CDS-3UTR CCA 90 bp | GCGTGGTGCTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACGGGGCTGTTCGTCGATaGCGAGGTGGCACCGCTGGC | + |
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Preference number: 4 (lower is better) Translates to: AWCWPWGWDSFSAKPKGHGAVRR*RGGTAG Trigger: GCCAGCGGTGCCACCTCGCCATCGACGAACAGCCCC...GTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| CDS-3UTR CCA 90 bp | GCCCCTGGGAAGTGGGACCCCCACACTTGGTGGGCAGCTGAGACACTTTCTATGCCACGCGGCCCTCAATaGGCCGGCGGCAAGCCCCAC | + |
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Preference number: 4 (lower is better) Translates to: APGKWDPHTWWAAETLSMPRGPQ*AGGKPH Trigger: GTGGGGCTTGCCGCCGGCCCATTGAGGGCCGCGTGG...CATAGAAAGTGTCTCAGCTGCCCACCAAGTGTGGGGGTCCCACTTCCCAGGGGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
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| CDS-3UTR TCA 90 bp | TGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACGAGGGCTGTTTGCCCAGCGCATTaGCCACGCGGCCCTCAATGG | + |
|
Preference number: 4 (lower is better) Translates to: WPWGWDSFSAKPKGHTRAVCPAH*PRGPQW Trigger: CCATTGAGGGCCGCGTGGTCAATGCGCTGGGCAAAC...AGCCCTCGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR GCA 90 bp | TGCTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACGAGGCGGAAGCAGCCAGGATaGCAGTTGGCGTTCATGGCC | + |
|
Preference number: 4 (lower is better) Translates to: CWPWGWDSFSAKPKGHTRRKQPG*QLAFMA Trigger: GGCCATGAACGCCAACTGGCATCCTGGCTGCTTCCG...CCTCGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CCA 90 bp | AAGGGTGCTTCCATGAAGCCTCTATCTGCGTGGTGCTGGCCCTGGGGTTGGGACCGGGCCTGGCAGCGCTaGCACATGGCATCGGCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: KGASMKPLSAWCWPWGWDRAWQR*HMASAK Trigger: TTTGGCCGATGCCATGTGCCAGCGCTGCCAGGCCCG...GTCCCAACCCCAGGGCCAGCACCACGCAGATAGAGGCTTCATGGAAGCACCCTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CCA 90 bp | CCAGGGCAATGTGCCCCTGGGAAGTGGGACCCCCACACTTGGTGGGCAGCTGAGGAGTCCCTCGGGAAATaGCCGGAAGCACTGTGCACA | + |
|
Preference number: 4 (lower is better) Translates to: PGQCAPGKWDPHTWWAAEESLGK*PEALCT Trigger: TGTGCACAGTGCTTCCGGCCATTTCCCGAGGGACTC...CTCAGCTGCCCACCAAGTGTGGGGGTCCCACTTCCCAGGGGCACATTGCCCTGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR TCA 90 bp | AGGATGGCATACCGGAGGAACGGGCTGGGCTGGAGCAGAAGTGGGAGGTGGCTAGTTCCCCATTGCTGTTaGCGATGCGCTCTGTGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: RMAYRRNGLGWSRSGRWLVPHCC*RCALWG Trigger: CCCCCACAGAGCGCATCGTCAACAGCAATGGGGAAC...TAGCCACCTCCCACTTCTGCTCCAGCCCAGCCCGTTCCTCCGGTATGCCATCCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR GCA 90 bp | CTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACGAGGGCTGGCCGGAAGCACTGTaGACACACAAAGCAGTGCTC | + |
|
Preference number: 4 (lower is better) Translates to: LALGLGQLLSQAQGSHEGWPEAL*THKAVL Trigger: GAGCACTGCTTTGTGTGTGCACAGTGCTTCCGGCCA...GCCCTCGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR GCA 90 bp | AGGGTCACACGAGGGCTGAAACTCTCCTGGGAGAGTGGAGAGGAGAGGCATCGGACTTGGGCTGGGCCTTaGGGGAGCTCAGGTCGGACA | + |
|
Preference number: 4 (lower is better) Translates to: RVTRGLKLSWESGEERHRTWAGP*GSSGRT Trigger: TGTCCGACCTGAGCTCCCGCAAGGCCCAGCCCAAGT...CCGATGCCTCTCCTCTCCACTCTCCCAGGAGAGTTTCAGCCCTCGTGTGACCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CCA 90 bp | GTGCCCCTGGGAAGTGGGACCCCCACACTTGGTGGGCAGCTGAGACACTTTCTAGCCTTCTCACGGTTGTaGCAAGGCCGGCAGAGGTGC | + |
|
Preference number: 4 (lower is better) Translates to: VPLGSGTPTLGGQLRHFLAFSRL*QGRQRC Trigger: GCACCTCTGCCGGCCTTGCCACAACCGTGAGAAGGC...TAGAAAGTGTCTCAGCTGCCCACCAAGTGTGGGGGTCCCACTTCCCAGGGGCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CCA 90 bp | TGTCCCTGGAGGTTGTGGGCCCGGGAGGAAATGCCTGTGAGGTGGGTCAGGCCTGCGAGGTGGCACCGCTaGCAGATGAATTTGCCCAAG | + |
|
Preference number: 4 (lower is better) Translates to: CPWRLWAREEMPVRWVRPARWHR*QMNLPK Trigger: CTTGGGCAAATTCATCTGCCAGCGGTGCCACCTCGC...AGGCCTGACCCACCTCACAGGCATTTCCTCCCGGGCCCACAACCTCCAGGGACA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR TCA 90 bp | CCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACGAGGGCTGAAAGGCACCGCTGGCAGATaGATTTGCCCAAGCCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: PGVGTASQPSPRVTRGLKGTAGR*ICPSPW Trigger: CCAAGGGCTTGGGCAAATTCATCTGCCAGCGGTGCC...TTTCAGCCCTCGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CCA 90 bp | TGCTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACGAGGATTTGCCCAAGCCCTTaGCCTTCTCACGGTTGTGGC | + |
|
Preference number: 4 (lower is better) Translates to: CWPWGWDSFSAKPKGHTRICPSP*PSHGCG Trigger: GCCACAACCGTGAGAAGGCCAAGGGCTTGGGCAAAT...CCTCGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| 3UTR CAA 72 bp | CATGAAGCCTCTATCTGCGTGGTGCTGGCCCTGGGGTaGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACAC | + |
|
Preference number: 4 (lower is better) Translates to: HEASICVVLALG*GQLLSQAQGSH Trigger: GTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGCAGATAGAGGCTTCATG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
||
| CDS-3UTR GCA 90 bp | CTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACGAGGGCCCTCGATCACATGACTaGAGTTGTAGCAGACATCCC | + |
|
Preference number: 4 (lower is better) Translates to: LALGLGQLLSQAQGSHEGPRSHD*SCSRHP Trigger: GGGATGTCTGCTACAACTGCAGTCATGTGATCGAGG...GCCCTCGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
||
| CDS-3UTR GCA 90 bp | TGTCCCTGGAGGTTGTGGGCCCGGGAGGAAATGCCTGTGAGGTGGGTCAGGCCTCCTCGATCACATGACTaGAGTTGTAGCAGACATCCC | + |
|
Preference number: 4 (lower is better) Translates to: CPWRLWAREEMPVRWVRPPRSHD*SCSRHP Trigger: GGGATGTCTGCTACAACTGCAGTCATGTGATCGAGG...AGGCCTGACCCACCTCACAGGCATTTCCTCCCGGGCCCACAACCTCCAGGGACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CCA 90 bp | TCCATGAAGCCTCTATCTGCGTGGTGCTGGCCCTGGGGTTGGGACAGCTTCTCATCGTCGATGGCGAGGTaGCACCGCTGGCAGATGAAT | + |
|
Preference number: 4 (lower is better) Translates to: SMKPLSAWCWPWGWDSFSSSMAR*HRWQMN Trigger: ATTCATCTGCCAGCGGTGCCACCTCGCCATCGACGA...TGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGCAGATAGAGGCTTCATGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| 3UTR CAA 72 bp | GTAGGGCTCTCGGGCTGCTTCACCCCAGAGGTGGGTTaGCTGACACAGTGTAAGCACAAGGACCTACTGTGC | + |
|
Preference number: 4 (lower is better) Translates to: VGLSGCFTPEVG*LTQCKHKDLLC Trigger: GCACAGTAGGTCCTTGTGCTTACACTGTGTCAGCAAACCCACCTCTGGGGTGAAGCAGCCCGAGAGCCCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
||
| CDS-3UTR GCA 90 bp | GTGAGGTGGGTCAGGCCTCAGCACAGAGGAAAGGGCTACATAGCCCGAGGTGGATTGGCGCAGACAAAGTaGTCCACATGCCACTGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: VRWVRPQHRGKGYIARGGLAQTK*STCHCL Trigger: CAAACAGTGGCATGTGGAGCACTTTGTCTGCGCCAA...TCCACCTCGGGCTATGTAGCCCTTTCCTCTGTGCTGAGGCCTGACCCACCTCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| 3UTR CAA 72 bp | AATAATCCTGCTCCAGTTTGTTCCTGTCCCTGGAGGTaGTGGGCCCGGGAGGAAATGCCTGTGAGGTGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: NNPAPVCSCPWR*WAREEMPVRWV Trigger: GACCCACCTCACAGGCATTTCCTCCCGGGCCCACAACCTCCAGGGACAGGAACAAACTGGAGCAGGATTATT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CCA 90 bp | GAGCCTTCATTGTGTAAGTATGTGACCACTTGTGGGTCTTCGATGGCCAGGGCAGGCAAGCCCCACAGATaGGGATGCCCATCTTGTCGT | + |
|
Preference number: 4 (lower is better) Translates to: EPSLCKYVTTCGSSMARAGKPHR*GCPSCR Trigger: ACGACAAGATGGGCATCCCCATCTGTGGGGCTTGCC...TGCCCTGGCCATCGAAGACCCACAAGTGGTCACATACTTACACAATGAAGGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR TCA 90 bp | AGAGGAAAGGGCTACATAGCCCGAGGTGGACTGGAAGCAGAAAGGATGGCATACACTTGTTCTTTAGAGTaGGCTTCATGTTGCAGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: RGKGYIARGGLEAERMAYTCSLE*ASCCRW Trigger: CCACCTGCAACATGAAGCTCACTCTAAAGAACAAGT...GTATGCCATCCTTTCTGCTTCCAGTCCACCTCGGGCTATGTAGCCCTTTCCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CCA 90 bp | AGTGTAAGCACAAGGACCTACTGTGCTCGAATAACTGAGAAGGGTGCTTCCATGATGGCTTCTCACACTTaGCGCAGACAAAGTGCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: SVSTRTYCARITEKGASMMASHT*RRQSAP Trigger: TGGAGCACTTTGTCTGCGCCAAGTGTGAGAAGCCAT...CATGGAAGCACCCTTCTCAGTTATTCGAGCACAGTAGGTCCTTGTGCTTACACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CAA 90 bp | CCCGAGGTGGACTGGAAGCAGAAAGGATGGCATACCGGAGGAACGGGCTGGGCTGACTTGGGCTGGGCCTaGCGGGAGCTCAGGTCGGAC | + |
|
Preference number: 5 (lower is better) Translates to: PEVDWKQKGWHTGGTGWADLGWA*RELRSD Trigger: GTCCGACCTGAGCTCCCGCAAGGCCCAGCCCAAGTC...AGCCCAGCCCGTTCCTCCGGTATGCCATCCTTTCTGCTTCCAGTCCACCTCGGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CAA 90 bp | TGCGTGGTGCTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCATTGGCCTTCTCACGGTaGTGGCAAGGCCGGCAGAGG | + |
|
Preference number: 5 (lower is better) Translates to: CVVLALGLGQLLSQAQGSLAFSR*WQGRQR Trigger: CCTCTGCCGGCCTTGCCACAACCGTGAGAAGGCCAA...TGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS CCA 90 bp | CTGTTGACGATGCGCTCTGTGGGGGCAAACCGGGCCTGGCAGCGCTaGCACATGGCATCGGCCAAACACTCAGACATGTTGCTTCCCGTC | + |
|
Preference number: 5 (lower is better) Translates to: LLTMRSVGANRAWQR*HMASAKHSDMLLPV Trigger: GACGGGAAGCAACATGTCTGAGTGTTTGGCCGATGCCATGTGCCAGCGCTGCCAGGCCCGGTTTGCCCCCACAGAGCGCATCGTCAACAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS CCA 90 bp | GTGCCTGAGCCCCCTGCTCTGGCTCAACCAGATCACTCCGATCTCTaGAGACTTTCTGTGTGCACTCCCGACAGGCCCCAGGGCACAGGA | + |
|
Preference number: 5 (lower is better) Translates to: VPEPPALAQPDHSDL*RLSVCTPDRPQGTG Trigger: TCCTGTGCCCTGGGGCCTGTCGGGAGTGCACACAGAAAGTCTCCAGAGATCGGAGTGATCTGGTTGAGCCAGAGCAGGGGGCTCAGGCAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000223753.2 |
||
| CDS-3UTR CAA 90 bp | TCTGCGTGGTGCTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCGCTGGCAGATGAATTaGCCCAAGCCCTTGGCCTTC | + |
|
Preference number: 5 (lower is better) Translates to: SAWCWPWGWDSFSAKPKGRWQMN*PKPLAF Trigger: GAAGGCCAAGGGCTTGGGCAAATTCATCTGCCAGCG...ACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGCAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CAA 90 bp | TGCTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACGAGGTTCACACACCAGGCTTaGCTGAGGGCTGACACCACG | + |
|
Preference number: 5 (lower is better) Translates to: CWPWGWDSFSAKPKGHTRFTHQA*LRADTT Trigger: CGTGGTGTCAGCCCTCAGCAAAGCCTGGTGTGTGAA...CCTCGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
||
| CDS-3UTR CAA 90 bp | AGGGTCACACGAGGGCTGAAACTCTCCTGGGAGAGTGGAGAGGAGAGGCATCGGTTGACGTCCACAGACTaGGGCTGGGCCTTGCGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: RVTRGLKLSWESGEERHRLTSTD*GWALRE Trigger: CTCCCGCAAGGCCCAGCCCAAGTCTGTGGACGTCAA...CCGATGCCTCTCCTCTCCACTCTCCCAGGAGAGTTTCAGCCCTCGTGTGACCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CAA 90 bp | AGCCTCTATCTGCGTGGTGCTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCAGTTCCCCATTGCTGTaGACGATGCGCTCTGTGGGG | + |
|
Preference number: 5 (lower is better) Translates to: SLYLRGAGPGVGTASQPSSSPLL*TMRSVG Trigger: CCCCACAGAGCGCATCGTCAACAGCAATGGGGAACT...GCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGCAGATAGAGGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CAA 90 bp | CCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACGAGGGCTGAATTGGCGTTCATGGCCTaGATCACGCGGCCAATGACA | + |
|
Preference number: 5 (lower is better) Translates to: PWGWDSFSAKPKGHTRAELAFMA*ITRPMT Trigger: TGTCATTGGCCGCGTGATCAAGGCCATGAACGCCAA...TTCAGCCCTCGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CAA 90 bp | GTGCCCCTGGGAAGTGGGACCCCCACACTTGGTGGGCAGCTGAGACACTTTCTACAGCCAGGATGCCAGTaGGCGTTCATGGCCTTGATC | + |
|
Preference number: 5 (lower is better) Translates to: VPLGSGTPTLGGQLRHFLQPGCQ*AFMALI Trigger: GATCAAGGCCATGAACGCCAACTGGCATCCTGGCTG...TAGAAAGTGTCTCAGCTGCCCACCAAGTGTGGGGGTCCCACTTCCCAGGGGCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS GCA 90 bp | GTGCACTCCCGACAGGCCCCAGGGCACAGGATCCTCACCCAGGCCTaGAGACAGTGCCTGTGTTCTGTCCAGCTAGCTTCCTTAGATAAA | + |
|
Preference number: 5 (lower is better) Translates to: VHSRQAPGHRILTQA*RQCLCSVQLASLDK Trigger: TTTATCTAAGGAAGCTAGCTGGACAGAACACAGGCACTGTCTGCAGGCCTGGGTGAGGATCCTGTGCCCTGGGGCCTGTCGGGAGTGCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223753.2 |
||
| CDS-3UTR CAA 90 bp | GCCCCTGGGAAGTGGGACCCCCACACTTGGTGGGCAGCTGAGACACTTTCTATGAATTTGCCCAAGCCCTaGGCCTTCTCACGGTTGTGG | + |
|
Preference number: 5 (lower is better) Translates to: APGKWDPHTWWAAETLSMNLPKP*AFSRLW Trigger: CCACAACCGTGAGAAGGCCAAGGGCTTGGGCAAATT...CATAGAAAGTGTCTCAGCTGCCCACCAAGTGTGGGGGTCCCACTTCCCAGGGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CAA 90 bp | GGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACGAGGGCTGAAACTCTCAGCTCCTTCCCACAGTaGGAGCAGCTGAAGTGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: GWDSFSAKPKGHTRAETLSSFPQ*EQLKWS Trigger: GGACCACTTCAGCTGCTCCAACTGTGGGAAGGAGCT...GAGAGTTTCAGCCCTCGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CAA 90 bp | AGCCTCTATCTGCGTGGTGCTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCAATGGCTTCTCACACTaGGCGCAGACAAAGTGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: SLYLRGAGPGVGTASQPSNGFSH*AQTKCS Trigger: GGAGCACTTTGTCTGCGCCAAGTGTGAGAAGCCATT...GCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGCAGATAGAGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS-3UTR CAA 90 bp | TTCCATGAAGCCTCTATCTGCGTGGTGCTGGCCCTGGGGTTGGGACAGCTTCTCTTCACACACCAGGCTTaGCTGAGGGCTGACACCACG | + |
|
Preference number: 5 (lower is better) Translates to: FHEASICVVLALGLGQLLFTHQA*LRADTT Trigger: CGTGGTGTCAGCCCTCAGCAAAGCCTGGTGTGTGAA...GAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGCAGATAGAGGCTTCATGGAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
||
| CDS-3UTR CAA 90 bp | GCGTGGTGCTGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACAGAGTGAGCTTCATGTaGCAGGTGGAACAGGAAAAG | + |
|
Preference number: 5 (lower is better) Translates to: AWCWPWGWDSFSAKPKGHRVSFM*QVEQEK Trigger: CTTTTCCTGTTCCACCTGCAACATGAAGCTCACTCT...GTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCAGCACCACGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
||
| CDS-3UTR CAA 90 bp | TGGCCCTGGGGTTGGGACAGCTTCTCAGCCAAGCCCAAGGGTCACACGAGGGCTAGAGTGAGCTTCATGTaGCAGGTGGAACAGGAAAAG | + |
|
Preference number: 5 (lower is better) Translates to: WPWGWDSFSAKPKGHTRARVSFM*QVEQEK Trigger: CTTTTCCTGTTCCACCTGCAACATGAAGCTCACTCT...AGCCCTCGTGTGACCCTTGGGCTTGGCTGAGAAGCTGTCCCAACCCCAGGGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025254.9 ENSMUST00000224328.2 |
||
| CDS-3UTR CAA 90 bp | CCAAGGGTCACACGAGGGCTGAAACTCTCCTGGGAGAGTGGAGAGGAGAGGCATTCGAACTCCACAAACTaGTTCTTTAGAGTGAGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: PRVTRGLKLSWESGEERHSNSTN*FFRVSF Trigger: GAAGCTCACTCTAAAGAACAAGTTTGTGGAGTTCGA...ATGCCTCTCCTCTCCACTCTCCCAGGAGAGTTTCAGCCCTCGTGTGACCCTTGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS CCA 72 bp | CGCGGCCCTCAATGGGCCGGCGGCAAGCCCCACAGATaGGGATGCCCATCTTGTCGTGACAAGGCAGGCAGT | + |
|
Preference number: 6 (lower is better) Translates to: RGPQWAGGKPHR*GCPSCRDKAGS Trigger: ACTGCCTGCCTTGTCACGACAAGATGGGCATCCCCATCTGTGGGGCTTGCCGCCGGCCCATTGAGGGCCGCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS CCA 72 bp | CTGTGGGGGCAAACCGGGCCTGGCAGCGCTGGCACATaGCATCGGCCAAACACTCAGACATGTTGCTTCCCG | + |
|
Preference number: 6 (lower is better) Translates to: LWGQTGPGSAGT*HRPNTQTCCFP Trigger: CGGGAAGCAACATGTCTGAGTGTTTGGCCGATGCCATGTGCCAGCGCTGCCAGGCCCGGTTTGCCCCCACAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025254.9 |
||
| CDS TCA 72 bp | AGGGCTGCTACAACCCTTGGTCCAGGGTACTGTGCCTaGGCCCCCTGCTCTGGCTCAACCAGATCACTCCGA | + |
|
Preference number: 6 (lower is better) Translates to: RAATTLGPGYCA*APCSGSTRSLR Trigger: TCGGAGTGATCTGGTTGAGCCAGAGCAGGGGGCTCAGGCACAGTACCCTGGACCAAGGGTTGTAGCAGCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223753.2 |
||
| CDS CAA 72 bp | TGGCGCAGACAAAGTGCTGTAGGGCTGCTACAACCCTaGGTCCAGGGTACTGTGCCTGAGCCCCCTGCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: WRRQSAVGLLQP*VQGTVPEPPAL Trigger: CAGAGCAGGGGGCTCAGGCACAGTACCCTGGACCAAGGGTTGTAGCAGCCCTACAGCACTTTGTCTGCGCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223753.2 |
||
| CDS CAA 90 bp | TCTCACACTTGGCGCAGACAAAGTGCTGTAGGGCTGCTACAACCCTaGGTCCAGGGTACTGTGCCTGAGCCCCCTGCTCTGGCTCAACCA | + |
|
Preference number: 6 (lower is better) Translates to: SHTWRRQSAVGLLQP*VQGTVPEPPALAQP Trigger: TGGTTGAGCCAGAGCAGGGGGCTCAGGCACAGTACCCTGGACCAAGGGTTGTAGCAGCCCTACAGCACTTTGTCTGCGCCAAGTGTGAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223753.2 |
||
| CDS GCA 72 bp | CAGCAGGCTGGCAGAGCAGGCCTAGGGACACATCCCTaGTTTAAAGGTCCAGGAGAATCCAACCTTCCCGTC | + |
|
Preference number: 6 (lower is better) Translates to: QQAGRAGLGTHP*FKGPGESNLPV Trigger: GACGGGAAGGTTGGATTCTCCTGGACCTTTAAAGCAGGGATGTGTCCCTAGGCCTGCTCTGCCAGCCTGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000225404.2 |
||
| CDS GCA 72 bp | CAACCAGATCACTCCGATCTCTGGAGACTTTCTGTGTaGACTCCCGACAGGCCCCAGGGCACAGGATCCTCA | + |
|
Preference number: 6 (lower is better) Translates to: QPDHSDLWRLSV*TPDRPQGTGSS Trigger: TGAGGATCCTGTGCCCTGGGGCCTGTCGGGAGTGCACACAGAAAGTCTCCAGAGATCGGAGTGATCTGGTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000223753.2 |
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| CDS CCA 72 bp | CCTTGGTCCAGGGTACTGTGCCTGAGCCCCCTGCTCTaGCTCAACCAGATCACTCCGATCTCTGGAGACTTT | + |
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Preference number: 6 (lower is better) Translates to: PWSRVLCLSPLL*LNQITPISGDF Trigger: AAAGTCTCCAGAGATCGGAGTGATCTGGTTGAGCCAGAGCAGGGGGCTCAGGCACAGTACCCTGGACCAAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000223753.2 |
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