Pregenerated sensors for LIMS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019920Ensembl transcript IDs: ENSMUST00000020078.14, ENSMUST00000238939.2
Found 72 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAGGCAAGGCCACACACCTCGAAAGGGATGGGGAAAGCACGGGAATaGGTGCTTTTCTGCTCCATACTTCCAGTGAGGTATGTAAGTTAC | + |
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Preference number: 1 (lower is better) Translates to: QARPHTSKGMGKARE*VLFCSILPVRYVSY Trigger: GTAACTTACATACCTCACTGGAAGTATGGAGCAGAAAAGCACTCATTCCCGTGCTTTCCCCATCCCTTTCGAGGTGTGTGGCCTTGCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR CCA 90 bp | TATTCCTGTCTGAAGAGAAGTGAGCAAAGACAGCAGTGGGGACTCTaGCTTAAGCGATGTCACGTAAGCAAAGGCAGTCAGGCAAGGCCA | + |
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Preference number: 1 (lower is better) Translates to: YSCLKRSEQRQQWGL*LKRCHVSKGSQARP Trigger: TGGCCTTGCCTGACTGCCTTTGCTTACGTGACATCGCTTAAGCCAGAGTCCCCACTGCTGTCTTTGCTCACTTCTCTTCAGACAGGAATA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR GCA 90 bp | CTTCCCATACAGTTCCCAGTATATGAATGGGAAATGATTTTCTTATaGGATCAGGGAAGCAAAGCTTATGTGAGTCCCGTGAAAGCTGAC | + |
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Preference number: 1 (lower is better) Translates to: LPIQFPVYEWEMIFL*DQGSKAYVSPVKAD Trigger: GTCAGCTTTCACGGGACTCACATAAGCTTTGCTTCCCTGATCGCATAAGAAAATCATTTCCCATTCATATACTGGGAACTGTATGGGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR CCA 90 bp | AACTGTTTGGGCACTTATCTTCCCATACAGTTCCCAGTATATGAATaGGAAATGATTTTCTTATGCGATCAGGGAAGCAAAGCTTATGTG | + |
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Preference number: 1 (lower is better) Translates to: NCLGTYLPIQFPVYE*EMIFLCDQGSKAYV Trigger: CACATAAGCTTTGCTTCCCTGATCGCATAAGAAAATCATTTCCCATTCATATACTGGGAACTGTATGGGAAGATAAGTGCCCAAACAGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAGCAGAGAGCTGGGATTaGAGCCTAGTGCCACCACAC | + |
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Preference number: 2 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKAESWD*SLVPPH Trigger: GTGTGGTGGCACTAGGCTTCAATCCCAGCTCTCTGC...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAATGGCAGCAAGTGCTTTaGTTGGTCCATAGAGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKWQQVL*LVHRAG Trigger: CCCTGCTCTATGGACCAACCAAAGCACTTGCTGCCA...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAATATGCAGCCCTGGGTaGCCTAGGACTCACAGAGAT | + |
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Preference number: 2 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKICSPG*PRTHRD Trigger: ATCTCTGTGAGTCCTAGGCCACCCAGGGCTGCATAT...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAATTTCCCCCTTGGATCTaGGGCTCACTAGTTAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKFPPWI*GSLVRL Trigger: CAGCCTAACTAGTGAGCCCCAGATCCAAGGGGGAAA...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAGTGCATGTGTGTGTGTaGATGTGGAGGCTAGGGATC | + |
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Preference number: 2 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKVHVCV*MWRLGI Trigger: GATCCCTAGCCTCCACATCCACACACACACATGCAC...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAACACCTCGAAAGGGATaGGGAAAGCACGGGAATGAG | + |
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Preference number: 2 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKTPRKG*GKHGNE Trigger: CTCATTCCCGTGCTTTCCCCATCCCTTTCGAGGTGT...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAACAGCAGTGGGGACTCTaGCTTAAGCGATGTCACGTA | + |
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Preference number: 2 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKQQWGL*LKRCHV Trigger: TACGTGACATCGCTTAAGCCAGAGTCCCCACTGCTG...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR TCA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCGCAGAGAGCTGGGATTaGAGCCTAGTGCCACCACAC | + |
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Preference number: 2 (lower is better) Translates to: TNRMAQTFQDKQFYKVELAESWD*SLVPPH Trigger: GTGTGGTGGCACTAGGCTTCAATCCCAGCTCTCTGC...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR GCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAATCACAGAGATCTGCCTaGAGAGAGCTGGGATTGAAG | + |
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Preference number: 2 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKSQRSA*RELGLK Trigger: CTTCAATCCCAGCTCTCTGCAGGCAGATCTCTGTGA...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAGAGTCCCGTGAAAGCTaGCTCTTTATAACAGTGGTT | + |
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Preference number: 2 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKESRES*LFITVV Trigger: AACCACTGTTATAAAGAGTCAGCTTTCACGGGACTC...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR TCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATCTGTCTGAAGAGAAGTaGGCAAAGACAGCAGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANLSEEK*AKTAVG Trigger: CCCCACTGCTGTCTTTGCTCACTTCTCTTCAGACAG...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCTGGCAGCAAGTGCTTTaGTTGGTCCATAGAGCAGGG | + |
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Preference number: 2 (lower is better) Translates to: TNRMAQTFQDKQFYKVELWQQVL*LVHRAG Trigger: CCCTGCTCTATGGACCAACCAAAGCACTTGCTGCCA...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAAACTTAGTACTAGGCTaGCAGCAAGTGCTTTGGTTG | + |
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Preference number: 2 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKNLVLG*QQVLWL Trigger: CAACCAAAGCACTTGCTGCCAGCCTAGTACTAAGTT...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATATATGCAGCCCTGGGTaGCCTAGGACTCACAGAGAT | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANICSPG*PRTHRD Trigger: ATCTCTGTGAGTCCTAGGCCACCCAGGGCTGCATAT...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATGTGCATGTGTGTGTGTaGATGTGGAGGCTAGGGATC | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANVHVCV*MWRLGI Trigger: GATCCCTAGCCTCCACATCCACACACACACATGCAC...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATACACCTCGAAAGGGATaGGGAAAGCACGGGAATGAG | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANTPRKG*GKHGNE Trigger: CTCATTCCCGTGCTTTCCCCATCCCTTTCGAGGTGT...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAATGAAGTCTCTGTCTTaGCCCCATTTAGACCTCCAT | + |
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Preference number: 2 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKMKSLS*PHLDLH Trigger: ATGGAGGTCTAAATGGGGCCAAGACAGAGACTTCAT...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR TCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATGGGAAAGCACGGGAATaGGTGCTTTTCTGCTCCATA | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANGKARE*VLFCSI Trigger: TATGGAGCAGAAAAGCACTCATTCCCGTGCTTTCCC...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR GCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATTCACAGAGATCTGCCTaGAGAGAGCTGGGATTGAAG | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANSQRSA*RELGLK Trigger: CTTCAATCCCAGCTCTCTGCAGGCAGATCTCTGTGA...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR TCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATCTAATAGGAAGTAGATaGAGTCTCTGTCTTGGCCCC | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANLIGSR*SLCLGP Trigger: GGGGCCAAGACAGAGACTTCATCTACTTCCTATTAG...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR GCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATAACAAGGTTTTAATATaGAGCCCTGGGTGGCCTAGG | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANNKVLI*SPGWPR Trigger: CCTAGGCCACCCAGGGCTGCATATTAAAACCTTGTT...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR GCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATATGTTCACTGACAAATaGCAGCAGCCAGTGAAACCC | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANMFTDK*QQPVKP Trigger: GGGTTTCACTGGCTGCTGGCATTTGTCAGTGAACAT...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCCACCATGGCCATCTGTaGAGGTTAGAGAACAACTTG | + |
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Preference number: 2 (lower is better) Translates to: TNRMAQTFQDKQFYKVELHHGHL*RLENNL Trigger: CAAGTTGTTCTCTAACCTCCACAGATGGCCATGGTG...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR TCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATGAGTCCCGTGAAAGCTaGCTCTTTATAACAGTGGTT | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANESRES*LFITVV Trigger: AACCACTGTTATAAAGAGTCAGCTTTCACGGGACTC...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR TCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATCTAGTCATTCTTAGCTaGCAAAGGCACACGGAAGAA | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANLVILS*QRHTEE Trigger: TTCTTCCGTGTGCCTTTGTCAGCTAAGAATGACTAG...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR GCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAGAAATGATTTTCTTATaGGATCAGGGAAGCAAAGCT | + |
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Preference number: 2 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKEMIFL*DQGSKA Trigger: AGCTTTGCTTCCCTGATCGCATAAGAAAATCATTTC...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCAACTTAGTACTAGGCTaGCAGCAAGTGCTTTGGTTG | + |
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Preference number: 2 (lower is better) Translates to: TNRMAQTFQDKQFYKVELNLVLG*QQVLWL Trigger: CAACCAAAGCACTTGCTGCCAGCCTAGTACTAAGTT...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATATCCACCTTGCTTTTTaGAATACAGGATTTCCCCCT | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANIHLAF*NTGFPP Trigger: AGGGGGAAATCCTGTATTCCAAAAAGCAAGGTGGAT...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATGGAATTAACTTTCACTaGCTTCCTGAGAAAAGAATT | + |
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Preference number: 2 (lower is better) Translates to: IVSLHQSFPNLKLANLANGINFH*LPEKRI Trigger: AATTCTTTTCTCAGGAAGCCAGTGAAAGTTAATTCC...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CCA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCGGAATTAACTTTCACTaGCTTCCTGAGAAAAGAATT | + |
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Preference number: 2 (lower is better) Translates to: TNRMAQTFQDKQFYKVELGINFH*LPEKRI Trigger: AATTCTTTTCTCAGGAAGCCAGTGAAAGTTAATTCC...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR CCA 72 bp | AAGGCAGTCAGGCAAGGCCACACACCTCGAAAGGGATaGGGAAAGCACGGGAATGAGTGCTTTTCTGCTCCA | + |
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Preference number: 3 (lower is better) Translates to: KAVRQGHTPRKG*GKHGNECFSAP Trigger: TGGAGCAGAAAAGCACTCATTCCCGTGCTTTCCCCATCCCTTTCGAGGTGTGTGGCCTTGCCTGACTGCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR GCA 72 bp | CAGTCTAGGCGGCCCTTCCTCAGGAGGCATCCACCTTaGTTTTTGGAATACAGGATTTCCCCCTTGGATCTG | + |
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Preference number: 3 (lower is better) Translates to: QSRRPFLRRHPP*FLEYRISPLDL Trigger: CAGATCCAAGGGGGAAATCCTGTATTCCAAAAAGCAAGGTGGATGCCTCCTGAGGAAGGGCCGCCTAGACTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR CCA 72 bp | CACATCCATATTTCTGAATGTGTGCATGTGTGTGTGTaGATGTGGAGGCTAGGGATCAGTCTAGGCGGCCCT | + |
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Preference number: 3 (lower is better) Translates to: HIHISECVHVCV*MWRLGISLGGP Trigger: AGGGCCGCCTAGACTGATCCCTAGCCTCCACATCCACACACACACATGCACACATTCAGAAATATGGATGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR CCA 72 bp | GGATTCAACTTAGTACTAGGCTGGCAGCAAGTGCTTTaGTTGGTCCATAGAGCAGGGTGTTTAACTCTGAAG | + |
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Preference number: 3 (lower is better) Translates to: GFNLVLGWQQVL*LVHRAGCLTLK Trigger: CTTCAGAGTTAAACACCCTGCTCTATGGACCAACCAAAGCACTTGCTGCCAGCCTAGTACTAAGTTGAATCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CAA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAATACAGGATTTCCCCCTaGGATCTGGGGCTCACTAGT | + |
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Preference number: 3 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKYRISP*DLGLTS Trigger: ACTAGTGAGCCCCAGATCCAAGGGGGAAATCCTGTA...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CAA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAGATGAAGTCTCTGTCTaGGCCCCATTTAGACCTCCA | + |
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Preference number: 3 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKDEVSV*APFRPP Trigger: TGGAGGTCTAAATGGGGCCAAGACAGAGACTTCATC...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CAA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATTGCAGAGAGCTGGGATaGAAGCCTAGTGCCACCACA | + |
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Preference number: 3 (lower is better) Translates to: IVSLHQSFPNLKLANLANCRELG*KPSATT Trigger: TGTGGTGGCACTAGGCTTCAATCCCAGCTCTCTGCA...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CAA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCTGCAGAGAGCTGGGATaGAAGCCTAGTGCCACCACA | + |
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Preference number: 3 (lower is better) Translates to: TNRMAQTFQDKQFYKVELCRELG*KPSATT Trigger: TGTGGTGGCACTAGGCTTCAATCCCAGCTCTCTGCA...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CAA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATGATGAAGTCTCTGTCTaGGCCCCATTTAGACCTCCA | + |
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Preference number: 3 (lower is better) Translates to: IVSLHQSFPNLKLANLANDEVSV*APFRPP Trigger: TGGAGGTCTAAATGGGGCCAAGACAGAGACTTCATC...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CAA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATCATCCACCTTGCTTTTaGGAATACAGGATTTCCCCC | + |
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Preference number: 3 (lower is better) Translates to: IVSLHQSFPNLKLANLANHPPCF*EYRISP Trigger: GGGGGAAATCCTGTATTCCAAAAAGCAAGGTGGATG...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR-3UTR CAA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAACCTGAGATATCCTTTTaGTGTGTACACATCCATATT | + |
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Preference number: 3 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKPEISF*CVHIHI Trigger: AATATGGATGTGTACACACAAAAAGGATATCTCAGG...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| 3UTR TCA 72 bp | TCAGGGAAGCAAAGCTTATGTGAGTCCCGTGAAAGCTaGCTCTTTATAACAGTGGTTGTCTATTATGTTTAT | + |
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Preference number: 3 (lower is better) Translates to: SGKQSLCESRES*LFITVVVYYVY Trigger: ATAAACATAATAGACAACCACTGTTATAAAGAGTCAGCTTTCACGGGACTCACATAAGCTTTGCTTCCCTGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR TCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAACCTCTGCGTGCCCATTaGCTCTCAGACTCTCAGGAC | + |
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Preference number: 4 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKPLRAH*LSDSQD Trigger: GTCCTGAGAGTCTGAGAGTCAATGGGCACGCAGAGG...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238939.2 |
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| CDS-3UTR GCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATGCGCAAAGCCTCCCTTaGAGCGCTCACACGTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: IVSLHQSFPNLKLANLANAQSLP*SAHTWH Trigger: GTGCCACGTGTGAGCGCTGCAAGGGAGGCTTTGCGC...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR GCA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCGCGCAAAGCCTCCCTTaGAGCGCTCACACGTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: TNRMAQTFQDKQFYKVELAQSLP*SAHTWH Trigger: GTGCCACGTGTGAGCGCTGCAAGGGAGGCTTTGCGC...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR GCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAAGCTCTTCCTCTGCGTaGCCATTGACTCTCAGACTC | + |
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Preference number: 4 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKSSSSA*PLTLRL Trigger: GAGTCTGAGAGTCAATGGGCACGCAGAGGAAGAGCT...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238939.2 |
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| CDS-3UTR CCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAACACTGGCCAAGGCATTaGCCATGTTGCTCAGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKHWPRH*PCCSAL Trigger: AAGAGCTGAGCAACATGGCCAATGCCTTGGCCAGTG...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238939.2 |
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| CDS-3UTR CCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAAATTCACCACATTGGTaGCAGCAGGGAGCAAAGAGC | + |
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Preference number: 4 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKNSPHW*QQGAKS Trigger: GCTCTTTGCTCCCTGCTGCCACCAATGTGGTGAATT...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR GCA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCGCTCAGCTCTTCCTCTaGGTGCCCATTGACTCTCAG | + |
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Preference number: 4 (lower is better) Translates to: TNRMAQTFQDKQFYKVELAQLFL*VPIDSQ Trigger: CTGAGAGTCAATGGGCACGCAGAGGAAGAGCTGAGC...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238939.2 |
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| CDS-3UTR GCA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCAGGCATTGGCCATGTTaGTCAGCTCTTCCTCTGCGT | + |
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Preference number: 4 (lower is better) Translates to: TNRMAQTFQDKQFYKVELRHWPC*SALPLR Trigger: ACGCAGAGGAAGAGCTGAGCAACATGGCCAATGCCT...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000238939.2 |
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| CDS-3UTR GCA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATCCACATGCCATTGCTTaGCCATGGCATTCACTACTC | + |
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Preference number: 4 (lower is better) Translates to: IVSLHQSFPNLKLANLANPHAIA*PWHSLL Trigger: GAGTAGTGAATGCCATGGGCAAGCAATGGCATGTGG...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR GCA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCCCACATGCCATTGCTTaGCCATGGCATTCACTACTC | + |
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Preference number: 4 (lower is better) Translates to: TNRMAQTFQDKQFYKVELPHAIA*PWHSLL Trigger: GAGTAGTGAATGCCATGGGCAAGCAATGGCATGTGG...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR GCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAATTGGCACAAACAAAATaGTCCACATGCCATTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKLAQTK*STCHCL Trigger: CAAGCAATGGCATGTGGAGCATTTTGTTTGTGCCAA...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR CCA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAGCGATGCCCAAGAAATaGTTTTTCACATTTGGCACA | + |
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Preference number: 4 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKAMPKK*FFTFGT Trigger: TGTGCCAAATGTGAAAAACCATTTCTTGGGCATCGC...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR GCA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCACAAAATGCTCCACATaGCATTGCTTGCCCATGGCA | + |
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Preference number: 4 (lower is better) Translates to: TNRMAQTFQDKQFYKVELTKCST*HCLPMA Trigger: TGCCATGGGCAAGCAATGGCATGTGGAGCATTTTGT...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR CCA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCGCGATGCCCAAGAAATaGTTTTTCACATTTGGCACA | + |
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Preference number: 4 (lower is better) Translates to: TNRMAQTFQDKQFYKVELAMPKK*FFTFGT Trigger: TGTGCCAAATGTGAAAAACCATTTCTTGGGCATCGC...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR CAA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAAAAGGCATTGGCCATGTaGCTCAGCTCTTCCTCTGCG | + |
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Preference number: 5 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKKALAM*LSSSSA Trigger: CGCAGAGGAAGAGCTGAGCAACATGGCCAATGCCTT...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000238939.2 |
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| CDS-3UTR CAA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCTTGGCCATGTTGCTGTaGGTCATTCCGGCCGCCACG | + |
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Preference number: 5 (lower is better) Translates to: TNRMAQTFQDKQFYKVELLAMLL*VIPAAT Trigger: CGTGGCGGCCGGAATGACCAACAGCAACATGGCCAA...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020078.14 |
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| CDS-3UTR CAA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAATGTCTGCCAGCATTCTaGACAAACCCTATGTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKCLPAF*TNPMSA Trigger: GGCAGACATAGGGTTTGTCAAGAATGCTGGCAGACA...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR CAA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAATTCTTGAGTGTGAGTTaGGTATTGCAGGTGGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKFLSVS*VLQVEQ Trigger: CTGCTCCACCTGCAATACCAAACTCACACTCAAGAA...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR CAA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATTCCTCTGCGTGCCCATaGACTCTCAGACTCTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: IVSLHQSFPNLKLANLANSSACP*TLRLSG Trigger: TCCTGAGAGTCTGAGAGTCAATGGGCACGCAGAGGA...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238939.2 |
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| CDS-3UTR CAA 90 bp | TGTTCTCAGAAATTCAAACAGATGTTCACTGACAAATGCCAGCAGCCAGTGAAACTGTTGTTCATGGCTTaGATAACCCTGCCAATGATG | + |
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Preference number: 5 (lower is better) Translates to: CSQKFKQMFTDKCQQPVKLLFMA*ITLPMM Trigger: CATCATTGGCAGGGTTATCAAAGCCATGAACAACAG...TTTCACTGGCTGCTGGCATTTGTCAGTGAACATCTGTTTGAATTTCTGAGAACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR CAA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATTGTCTGCCAGCATTCTaGACAAACCCTATGTCTGCC | + |
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Preference number: 5 (lower is better) Translates to: IVSLHQSFPNLKLANLANCLPAF*TNPMSA Trigger: GGCAGACATAGGGTTTGTCAAGAATGCTGGCAGACA...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR CAA 90 bp | ATTGTCAGCCTACATCAAAGTTTCCCTAACTTGAAATTGGCTAATTTGGCAAATAGTGTGAGTTTGGTATaGCAGGTGGAGCAGGCAAAG | + |
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Preference number: 5 (lower is better) Translates to: IVSLHQSFPNLKLANLANSVSLV*QVEQAK Trigger: CTTTGCCTGCTCCACCTGCAATACCAAACTCACACT...ATTTGCCAAATTAGCCAATTTCAAGTTAGGGAAACTTTGATGTAGGCTGACAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR CAA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCTTCTTGAGTGTGAGTTaGGTATTGCAGGTGGAGCAG | + |
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Preference number: 5 (lower is better) Translates to: TNRMAQTFQDKQFYKVELFLSVS*VLQVEQ Trigger: CTGCTCCACCTGCAATACCAAACTCACACTCAAGAA...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS-3UTR CAA 90 bp | ACAAACAGAATGGCCCAGACATTTCAGGATAAACAGTTTTATAAAGTAGAACTCCTGTTGTTCATGGCTTaGATAACCCTGCCAATGATG | + |
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Preference number: 5 (lower is better) Translates to: TNRMAQTFQDKQFYKVELLLFMA*ITLPMM Trigger: CATCATTGGCAGGGTTATCAAAGCCATGAACAACAG...GAGTTCTACTTTATAAAACTGTTTATCCTGAAATGTCTGGGCCATTCTGTTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020078.14 ENSMUST00000238939.2 |
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| CDS CAA 72 bp | CGCTCACACGTGGCACTGGCCAAGGCATTGGCCATGTaGCTCAGCTCTTCCTCTGCGTGCCCATTGACTCTC | + |
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Preference number: 6 (lower is better) Translates to: RSHVALAKALAM*LSSSSACPLTL Trigger: GAGAGTCAATGGGCACGCAGAGGAAGAGCTGAGCAACATGGCCAATGCCTTGGCCAGTGCCACGTGTGAGCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238939.2 |
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| CDS GCA 72 bp | AAGGCATTGGCCATGTTGCTCAGCTCTTCCTCTGCGTaGCCATTGACTCTCAGACTCTCAGGACGCTCTCGC | + |
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Preference number: 6 (lower is better) Translates to: KALAMLLSSSSA*PLTLRLSGRSR Trigger: GCGAGAGCGTCCTGAGAGTCTGAGAGTCAATGGGCACGCAGAGGAAGAGCTGAGCAACATGGCCAATGCCTT 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000238939.2 |
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