Pregenerated sensors for LIMD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040699Ensembl transcript IDs: ENSMUST00000045923.10, ENSMUST00000064545.11, ENSMUST00000106875.2
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGCCGACCCTGTCAGCTGAGGCTCTAGCAAGAGCTTTAGCTTTGTaGTGCAAGGGACCCCCAGACCCTGAAGGCTGCAGGCTGTCTTGC | + |
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Preference number: 1 (lower is better) Translates to: LPTLSAEALARALAL*CKGPPDPEGCRLSC Trigger: GCAAGACAGCCTGCAGCCTTCAGGGTCTGGGGGTCCCTTGCACCACAAAGCTAAAGCTCTTGCTAGAGCCTCAGCTGACAGGGTCGGCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR CCA 90 bp | TTCCAGTCTCTGTGGCTCATTACCAGGCTAAGGGGCAGAGGTAGATaGGGAGACAAGGGGGTACACAAGGCCCAGGTGGCAGTGAGGGAG | + |
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Preference number: 1 (lower is better) Translates to: FQSLWLITRLRGRGR*GDKGVHKAQVAVRE Trigger: CTCCCTCACTGCCACCTGGGCCTTGTGTACCCCCTTGTCTCCCCATCTACCTCTGCCCCTTAGCCTGGTAATGAGCCACAGAGACTGGAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR GCA 90 bp | GGGCTGTCCTCCATTCCCCTCGCTATGAGGAGTCTGCTGCATGCCTaGCACAAAGCATCCCCATCAGGCCACACAAGAGAGTCAAGAGCT | + |
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Preference number: 1 (lower is better) Translates to: GLSSIPLAMRSLLHA*HKASPSGHTRESRA Trigger: AGCTCTTGACTCTCTTGTGTGGCCTGATGGGGATGCTTTGTGGCAGGCATGCAGCAGACTCCTCATAGCGAGGGGAATGGAGGACAGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR TCA 90 bp | TTTAAGGCCAGGAGTATTGTGGGCTGTCCTCCATTCCCCTCGCTATaGGGAGTCTGCTGCATGCCTGCCACAAAGCATCCCCATCAGGCC | + |
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Preference number: 1 (lower is better) Translates to: FKARSIVGCPPFPSL*GVCCMPATKHPHQA Trigger: GGCCTGATGGGGATGCTTTGTGGCAGGCATGCAGCAGACTCCTCATAGCGAGGGGAATGGAGGACAGCCCACAATACTCCTGGCCTTAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR GCA 90 bp | TTGTGGGCTGTCCTCCATTCCCCTCGCTATGAGGAGTCTGCTGCATaGCTGCCACAAAGCATCCCCATCAGGCCACACAAGAGAGTCAAG | + |
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Preference number: 1 (lower is better) Translates to: LWAVLHSPRYEESAA*LPQSIPIRPHKRVK Trigger: CTTGACTCTCTTGTGTGGCCTGATGGGGATGCTTTGTGGCAGGCATGCAGCAGACTCCTCATAGCGAGGGGAATGGAGGACAGCCCACAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR CCA 90 bp | TGGCCAAGGTGGCCCCTCTCCTTCCCTTTTATCCCAGCGCGTCACTaGGACAGCACTGGTTGTCCATCTGAGCCGAATCCATCAATAGCT | + |
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Preference number: 1 (lower is better) Translates to: WPRWPLSFPFIPARH*DSTGCPSEPNPSIA Trigger: AGCTATTGATGGATTCGGCTCAGATGGACAACCAGTGCTGTCCCAGTGACGCGCTGGGATAAAAGGGAAGGAGAGGGGCCACCTTGGCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR CCA 90 bp | CGTCCCTCAGTGTGCATGAACTCTGAGGAGCGCAAAGTTTGCCCCTaGAGGTCCTGGCACAGTAGCTGTGACATCCCACTTCATACAAGA | + |
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Preference number: 1 (lower is better) Translates to: RPSVCMNSEERKVCP*RSWHSSCDIPLHTR Trigger: TCTTGTATGAAGTGGGATGTCACAGCTACTGTGCCAGGACCTCCAGGGGCAAACTTTGCGCTCCTCAGAGTTCATGCACACTGAGGGACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR GCA 90 bp | GATGCTACACCACCTTCATTTGTTCTTCATTCCATGGGGTTTATCTaGCTTCACCAACCCCACATGGAAGGGCCAAGCCTGGGTCAGGTG | + |
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Preference number: 1 (lower is better) Translates to: DATPPSFVLHSMGFI*LHQPHMEGPSLGQV Trigger: CACCTGACCCAGGCTTGGCCCTTCCATGTGGGGTTGGTGAAGGCAGATAAACCCCATGGAATGAAGAACAAATGAAGGTGGTGTAGCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR GCA 90 bp | CCCTGTCTCAAAAACCCAAAACATTTGTGTGGTTGCAAGCCAGTGTaGCTGGCTACTCTGGGACGAGGATACACAGTGGGATTTCAGGTT | + |
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Preference number: 1 (lower is better) Translates to: PCLKNPKHLCGCKPV*LATLGRGYTVGFQV Trigger: AACCTGAAATCCCACTGTGTATCCTCGTCCCAGAGTAGCCAGGCACACTGGCTTGCAACCACACAAATGTTTTGGGTTTTTGAGACAGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR CCA 90 bp | TGCTGTGCAAAGATGCTACACCACCTTCATTTGTTCTTCATTCCATaGGGTTTATCTGCCTTCACCAACCCCACATGGAAGGGCCAAGCC | + |
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Preference number: 1 (lower is better) Translates to: CCAKMLHHLHLFFIP*GLSAFTNPTWKGQA Trigger: GGCTTGGCCCTTCCATGTGGGGTTGGTGAAGGCAGATAAACCCCATGGAATGAAGAACAAATGAAGGTGGTGTAGCATCTTTGCACAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR TCA 90 bp | CAGAGGCAGGCAGATCTCTGTGTTCTAGGCCAATCAGAGCTACAGTaGGACCCTGTCTCAAAAACCCAAAACATTTGTGTGGTTGCAAGC | + |
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Preference number: 1 (lower is better) Translates to: QRQADLCVLGQSELQ*DPVSKTQNICVVAS Trigger: GCTTGCAACCACACAAATGTTTTGGGTTTTTGAGACAGGGTCTCACTGTAGCTCTGATTGGCCTAGAACACAGAGATCTGCCTGCCTCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR CCA 90 bp | GTCTCAAAAACCCAAAACATTTGTGTGGTTGCAAGCCAGTGTGCCTaGCTACTCTGGGACGAGGATACACAGTGGGATTTCAGGTTTGAC | + |
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Preference number: 1 (lower is better) Translates to: VSKTQNICVVASQCA*LLWDEDTQWDFRFD Trigger: GTCAAACCTGAAATCCCACTGTGTATCCTCGTCCCAGAGTAGCCAGGCACACTGGCTTGCAACCACACAAATGTTTTGGGTTTTTGAGAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR CCA 90 bp | TCATACAAGAGGCTCCAGGAAGATGACAGTCATGAGGAGAGAAGGTaGAAGACGTTGTACTGGCAGCACTTGATAGGCTATGGATTCCTA | + |
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Preference number: 1 (lower is better) Translates to: SYKRLQEDDSHEERR*KTLYWQHLIGYGFL Trigger: TAGGAATCCATAGCCTATCAAGTGCTGCCAGTACAACGTCTTCCACCTTCTCTCCTCATGACTGTCATCTTCCTGGAGCCTCTTGTATGA 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR CCA 90 bp | CAGGAAGATGACAGTCATGAGGAGAGAAGGTGGAAGACGTTGTACTaGCAGCACTTGATAGGCTATGGATTCCTACCATTCTTTGCAGAT | + |
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Preference number: 1 (lower is better) Translates to: QEDDSHEERRWKTLY*QHLIGYGFLPFFAD Trigger: ATCTGCAAAGAATGGTAGGAATCCATAGCCTATCAAGTGCTGCCAGTACAACGTCTTCCACCTTCTCTCCTCATGACTGTCATCTTCCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR TCA 90 bp | GCATTACTTACAATAAAAGGGATCATTTATATCAGAAGGGTCCTGTaGCCATGCTTTCGGTTAAAGGTGGTGGTGGGAATTTTTACAGGG | + |
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Preference number: 1 (lower is better) Translates to: ALLTIKGIIYIRRVL*PCFRLKVVVGIFTG Trigger: CCCTGTAAAAATTCCCACCACCACCTTTAACCGAAAGCATGGTCACAGGACCCTTCTGATATAAATGATCCCTTTTATTGTAAGTAATGC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR GCA 90 bp | GAAACCTGTGTGAGGGAGCCTCATCCTCTCCCACCCCGCGCCCCCGGGTTAATCCAGCGGGAGGCCATGTaGTGGGAGGGAATGGGTGTT | + |
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Preference number: 2 (lower is better) Translates to: ETCVREPHPLPPRAPGLIQREAM*WEGMGV Trigger: AACACCCATTCCCTCCCAGCACATGGCCTCCCGCTG...GATTAACCCGGGGGCGCGGGGTGGGAGAGGATGAGGCTCCCTCACACAGGTTTC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
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| 3UTR-3UTR GCA 90 bp | AGCCTTATGCCTGAAACCTGTGTGAGGGAGCCTCATCCTCTCCCACCCCGCGCCCAGCGGGAGGCCATGTaGTGGGAGGGAATGGGTGTT | + |
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Preference number: 2 (lower is better) Translates to: SLMPETCVREPHPLPPRAQREAM*WEGMGV Trigger: AACACCCATTCCCTCCCAGCACATGGCCTCCCGCTG...GGCGCGGGGTGGGAGAGGATGAGGCTCCCTCACACAGGTTTCAGGCATAAGGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
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| 3UTR-3UTR TCA 90 bp | GCCAGTGTGCCTGGCTACTCTGGGACGAGGATACACAGTGGGATTTCAGGTTTGGCCGACCCTGTCAGCTaGGGCTCTAGCAAGAGCTTT | + |
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Preference number: 2 (lower is better) Translates to: ASVPGYSGTRIHSGISGLADPVS*GSSKSF Trigger: AAAGCTCTTGCTAGAGCCTCAGCTGACAGGGTCGGC...CAAACCTGAAATCCCACTGTGTATCCTCGTCCCAGAGTAGCCAGGCACACTGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR TCA 90 bp | CGTCCAGCCCAGCCACTGTTTCTTTACTGCAGCAAGAGACCATCCTTGTCCCATGCGAGGTGGCATCTATaGGGCCCAGTAGATGGCACT | + |
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Preference number: 2 (lower is better) Translates to: RPAQPLFLYCSKRPSLSHARWHL*GPVDGT Trigger: AGTGCCATCTACTGGGCCTCATAGATGCCACCTCGC...ATGGGACAAGGATGGTCTCTTGCTGCAGTAAAGAAACAGTGGCTGGGCTGGACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR TCA 90 bp | CTGTCTCAAAAACCCAAAACATTTGTGTGGTTGCAAGCCAGTGTGCCTGGCTACGGGACCCCCAGACCCTaGAGGCTGCAGGCTGTCTTG | + |
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Preference number: 2 (lower is better) Translates to: LSQKPKTFVWLQASVPGYGTPRP*RLQAVL Trigger: CAAGACAGCCTGCAGCCTTCAGGGTCTGGGGGTCCC...GTAGCCAGGCACACTGGCTTGCAACCACACAAATGTTTTGGGTTTTTGAGACAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR GCA 90 bp | TTCCCTTGGTCCCTTACAGAACATCAGTCAGAGGCAAGGTCTCACTATGTAGCTGGCTGCAGGCTGTCTTaGCTCTTCCCCAGCCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: FPWSLTEHQSEARSHYVAGCRLS*LFPSPP Trigger: GGGAGGGCTGGGGAAGAGGCAAGACAGCCTGCAGCC...AGCTACATAGTGAGACCTTGCCTCTGACTGATGTTCTGTAAGGGACCAAGGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR CAA 90 bp | CGTCCAGCCCAGCCACTGTTTCTTTACTGCAGCAAGAGACCATCCTaGTCCCATAAATCCAAGGCTTTGTCGTGCCTGCTTCCCAGATGC | + |
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Preference number: 2 (lower is better) Translates to: RPAQPLFLYCSKRPS*SHKSKALSCLLPRC Trigger: GCATCTGGGAAGCAGGCACGACAAAGCCTTGGATTTATGGGACAAGGATGGTCTCTTGCTGCAGTAAAGAAACAGTGGCTGGGCTGGACG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR TCA 90 bp | GACAGTCATGAGGAGAGAAGGTGGAAGACGTTGTACTGGCAGCACTTGATAGGCAGCCGTGGGGTGAGATaGGGTGGACTAAAGGACACA | + |
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Preference number: 2 (lower is better) Translates to: DSHEERRWKTLYWQHLIGSRGVR*GGLKDT Trigger: TGTGTCCTTTAGTCCACCTCATCTCACCCCACGGCT...GCCTATCAAGTGCTGCCAGTACAACGTCTTCCACCTTCTCTCCTCATGACTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR CCA 90 bp | ACCCAAAACATTTGTGTGGTTGCAAGCCAGTGTGCCTGGCTACTCTGGGACGAGAGAGCTTTAGCTTTGTaGTGCAAGGGACCCCCAGAC | + |
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Preference number: 2 (lower is better) Translates to: TQNICVVASQCAWLLWDERALAL*CKGPPD Trigger: GTCTGGGGGTCCCTTGCACCACAAAGCTAAAGCTCT...CTCGTCCCAGAGTAGCCAGGCACACTGGCTTGCAACCACACAAATGTTTTGGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR TCA 90 bp | TCTGCCTTCACCAACCCCACATGGAAGGGCCAAGCCTGGGTCAGGTGCACGCTGTTTTTAAAAGAGGGTTaGTCACAACAGAACAGCACA | + |
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Preference number: 2 (lower is better) Translates to: SAFTNPTWKGQAWVRCTLFLKEG*SQQNST Trigger: TGTGCTGTTCTGTTGTGATCAACCCTCTTTTAAAAA...CAGCGTGCACCTGACCCAGGCTTGGCCCTTCCATGTGGGGTTGGTGAAGGCAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR CCA 90 bp | ATCCCACTTCATACAAGAGGCTCCAGGAAGATGACAGTCATGAGGAGAGAAGGTCTTAACACCCCAAGGTaGCACAGACCACCAGCCCCT | + |
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Preference number: 2 (lower is better) Translates to: IPLHTRGSRKMTVMRREGLNTPR*HRPPAP Trigger: AGGGGCTGGTGGTCTGTGCCACCTTGGGGTGTTAAG...ACCTTCTCTCCTCATGACTGTCATCTTCCTGGAGCCTCTTGTATGAAGTGGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR TCA 90 bp | TTCCCTTGGTCCCTTACAGAACATCAGTCAGAGGCAAGGTCTCACTATGTAGCTGTCCCTCAGTGTGCATaGACTCTGAGGAGCGCAAAG | + |
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Preference number: 2 (lower is better) Translates to: FPWSLTEHQSEARSHYVAVPQCA*TLRSAK Trigger: CTTTGCGCTCCTCAGAGTTCATGCACACTGAGGGAC...AGCTACATAGTGAGACCTTGCCTCTGACTGATGTTCTGTAAGGGACCAAGGGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR TCA 90 bp | ATCCCACTTCATACAAGAGGCTCCAGGAAGATGACAGTCATGAGGAGAGAAGGTCAATCAGAGCTACAGTaGGACCCTGTCTCAAAAACC | + |
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Preference number: 2 (lower is better) Translates to: IPLHTRGSRKMTVMRREGQSELQ*DPVSKT Trigger: GGTTTTTGAGACAGGGTCTCACTGTAGCTCTGATTG...ACCTTCTCTCCTCATGACTGTCATCTTCCTGGAGCCTCTTGTATGAAGTGGGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR GCA 90 bp | CACTGTTTCTTTACTGCAGCAAGAGACCATCCTTGTCCCATAAATCCAAGGCTTAGTCTGCTGCATGCCTaGCACAAAGCATCCCCATCA | + |
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Preference number: 2 (lower is better) Translates to: HCFFTAARDHPCPINPRLSLLHA*HKASPS Trigger: TGATGGGGATGCTTTGTGGCAGGCATGCAGCAGACT...AAGCCTTGGATTTATGGGACAAGGATGGTCTCTTGCTGCAGTAAAGAAACAGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR CCA 90 bp | CTGTCTCAAAAACCCAAAACATTTGTGTGGTTGCAAGCCAGTGTGCCTGGCTACGACGAGGATACACAGTaGGATTTCAGGTTTGACAGC | + |
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Preference number: 2 (lower is better) Translates to: LSQKPKTFVWLQASVPGYDEDTQ*DFRFDS Trigger: GCTGTCAAACCTGAAATCCCACTGTGTATCCTCGTC...GTAGCCAGGCACACTGGCTTGCAACCACACAAATGTTTTGGGTTTTTGAGACAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR CCA 90 bp | TGGCACAGTAGCTGTGACATCCCACTTCATACAAGAGGCTCCAGGAAGATGACATGGAAGACGTTGTACTaGCAGCACTTGATAGGCTAT | + |
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Preference number: 2 (lower is better) Translates to: WHSSCDIPLHTRGSRKMTWKTLY*QHLIGY Trigger: ATAGCCTATCAAGTGCTGCCAGTACAACGTCTTCCA...TGTCATCTTCCTGGAGCCTCTTGTATGAAGTGGGATGTCACAGCTACTGTGCCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR CCA 90 bp | CACTGTTTCTTTACTGCAGCAAGAGACCATCCTTGTCCCATAAATCCAAGGCTTCTCTTCCAGTCTCTGTaGCTCATTACCAGGCTAAGG | + |
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Preference number: 2 (lower is better) Translates to: HCFFTAARDHPCPINPRLLFQSL*LITRLR Trigger: CCTTAGCCTGGTAATGAGCCACAGAGACTGGAAGAG...AAGCCTTGGATTTATGGGACAAGGATGGTCTCTTGCTGCAGTAAAGAAACAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR CAA 90 bp | CCACACAAGAGAGTCAAGAGCTGTTTAAATGTTTTTAAAAGAGGGTaGATCACAACAGAACAGCACAACAGATGGAGGAGCATAGCTACT | + |
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Preference number: 2 (lower is better) Translates to: PHKRVKSCLNVFKRG*ITTEQHNRWRSIAT Trigger: AGTAGCTATGCTCCTCCATCTGTTGTGCTGTTCTGTTGTGATCAACCCTCTTTTAAAAACATTTAAACAGCTCTTGACTCTCTTGTGTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR TCA 72 bp | AGCTTTAGCTTTGTGGTGCAAGGGACCCCCAGACCCTaGAGGCTGCAGGCTGTCTTGCCTCTTCCCCAGCCC | + |
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Preference number: 3 (lower is better) Translates to: SFSFVVQGTPRP*RLQAVLPLPQP Trigger: GGGCTGGGGAAGAGGCAAGACAGCCTGCAGCCTTCAGGGTCTGGGGGTCCCTTGCACCACAAAGCTAAAGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR CAA 90 bp | TCTGCCTTCACCAACCCCACATGGAAGGGCCAAGCCTGGGTCAGGTGCACGCTGGGGCATGCTGACTCCTaGCTGGAGAAAAGGCACCTA | + |
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Preference number: 3 (lower is better) Translates to: SAFTNPTWKGQAWVRCTLGHADS*LEKRHL Trigger: TAGGTGCCTTTTCTCCAGCAAGGAGTCAGCATGCCC...CAGCGTGCACCTGACCCAGGCTTGGCCCTTCCATGTGGGGTTGGTGAAGGCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR CCA 72 bp | CTGTGGCTCATTACCAGGCTAAGGGGCAGAGGTAGATaGGGAGACAAGGGGGTACACAAGGCCCAGGTGGCA | + |
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Preference number: 3 (lower is better) Translates to: LWLITRLRGRGR*GDKGVHKAQVA Trigger: TGCCACCTGGGCCTTGTGTACCCCCTTGTCTCCCCATCTACCTCTGCCCCTTAGCCTGGTAATGAGCCACAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR CCA 72 bp | TGGCCCCTCTCCTTCCCTTTTATCCCAGCGCGTCACTaGGACAGCACTGGTTGTCCATCTGAGCCGAATCCA | + |
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Preference number: 3 (lower is better) Translates to: WPLSFPFIPARH*DSTGCPSEPNP Trigger: TGGATTCGGCTCAGATGGACAACCAGTGCTGTCCCAGTGACGCGCTGGGATAAAAGGGAAGGAGAGGGGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR-3UTR CAA 90 bp | TCTGCCTTCACCAACCCCACATGGAAGGGCCAAGCCTGGGTCAGGTGCACGCTGAGAAGGTGGAAGACGTaGTACTGGCAGCACTTGATA | + |
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Preference number: 3 (lower is better) Translates to: SAFTNPTWKGQAWVRCTLRRWKT*YWQHLI Trigger: TATCAAGTGCTGCCAGTACAACGTCTTCCACCTTCT...CAGCGTGCACCTGACCCAGGCTTGGCCCTTCCATGTGGGGTTGGTGAAGGCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR TCA 72 bp | AGGAGTATTGTGGGCTGTCCTCCATTCCCCTCGCTATaGGGAGTCTGCTGCATGCCTGCCACAAAGCATCCC | + |
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Preference number: 3 (lower is better) Translates to: RSIVGCPPFPSL*GVCCMPATKHP Trigger: GGGATGCTTTGTGGCAGGCATGCAGCAGACTCCTCATAGCGAGGGGAATGGAGGACAGCCCACAATACTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR GCA 72 bp | CCCTCAGTGTGCATGAACTCTGAGGAGCGCAAAGTTTaGCCCTGGAGGTCCTGGCACAGTAGCTGTGACATC | + |
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Preference number: 3 (lower is better) Translates to: PSVCMNSEERKV*PWRSWHSSCDI Trigger: GATGTCACAGCTACTGTGCCAGGACCTCCAGGGGCAAACTTTGCGCTCCTCAGAGTTCATGCACACTGAGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR CCA 72 bp | GTGTGCATGAACTCTGAGGAGCGCAAAGTTTGCCCCTaGAGGTCCTGGCACAGTAGCTGTGACATCCCACTT | + |
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Preference number: 3 (lower is better) Translates to: VCMNSEERKVCP*RSWHSSCDIPL Trigger: AAGTGGGATGTCACAGCTACTGTGCCAGGACCTCCAGGGGCAAACTTTGCGCTCCTCAGAGTTCATGCACAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR TCA 72 bp | GGAAAAGTAAGGAATCCTGGAGCAGAGCCTTATGCCTaGAACCTGTGTGAGGGAGCCTCATCCTCTCCCACC | + |
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Preference number: 3 (lower is better) Translates to: GKVRNPGAEPYA*NLCEGASSSPT Trigger: GGTGGGAGAGGATGAGGCTCCCTCACACAGGTTTCAGGCATAAGGCTCTGCTCCAGGATTCCTTACTTTTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
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| 3UTR-3UTR CAA 90 bp | GACAGTCATGAGGAGAGAAGGTGGAAGACGTTGTACTGGCAGCACTTGATAGGCGCAAGAGCTTTAGCTTaGTGGTGCAAGGGACCCCCA | + |
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Preference number: 3 (lower is better) Translates to: DSHEERRWKTLYWQHLIGARALA*WCKGPP Trigger: TGGGGGTCCCTTGCACCACAAAGCTAAAGCTCTTGC...GCCTATCAAGTGCTGCCAGTACAACGTCTTCCACCTTCTCTCCTCATGACTGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR TCA 72 bp | ACTCTGGGACGAGGATACACAGTGGGATTTCAGGTTTaGCAGCTTAACACCCCAAGGTGGCACAGACCACCA | + |
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Preference number: 3 (lower is better) Translates to: TLGRGYTVGFQV*QLNTPRWHRPP Trigger: TGGTGGTCTGTGCCACCTTGGGGTGTTAAGCTGTCAAACCTGAAATCCCACTGTGTATCCTCGTCCCAGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR GCA 72 bp | CAACTCAGACTTCCACTGAGGGAGCATCTTCACACTTaGCTTGTGCTTCTGCTGTGTGATGTCGTCCCTCAG | + |
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Preference number: 3 (lower is better) Translates to: QLRLPLREHLHT*LVLLLCDVVPQ Trigger: CTGAGGGACGACATCACACAGCAGAAGCACAAGGCAAGTGTGAAGATGCTCCCTCAGTGGAAGTCTGAGTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR GCA 72 bp | GTGCTGCCACGTCCAGCCCAGCCACTGTTTCTTTACTaGAGCAAGAGACCATCCTTGTCCCATAAATCCAAG | + |
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Preference number: 3 (lower is better) Translates to: VLPRPAQPLFLY*SKRPSLSHKSK Trigger: CTTGGATTTATGGGACAAGGATGGTCTCTTGCTGCAGTAAAGAAACAGTGGCTGGGCTGGACGTGGCAGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR GCA 72 bp | CTCTGCCTCCTGAGTGCTGGTATTAAAAGCATGTGCTaGCACGTCCAGCCCAGCCACTGTTTCTTTACTGCA | + |
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Preference number: 3 (lower is better) Translates to: LCLLSAGIKSMC*HVQPSHCFFTA Trigger: TGCAGTAAAGAAACAGTGGCTGGGCTGGACGTGGCAGCACATGCTTTTAATACCAGCACTCAGGAGGCAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| 3UTR GCA 72 bp | TGCCTCTGCCTCCTGAGTGCTGGTATTAAAAGCATGTaGTGCCACGTCCAGCCCAGCCACTGTTTCTTTACT | + |
|
Preference number: 3 (lower is better) Translates to: CLCLLSAGIKSM*CHVQPSHCFFT Trigger: AGTAAAGAAACAGTGGCTGGGCTGGACGTGGCAGCACATGCTTTTAATACCAGCACTCAGGAGGCAGAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR GCA 72 bp | AGGCTGATCTTGAATGCACAGAGACCCACCTGCCTCTaGCTCCTGAGTGCTGGTATTAAAAGCATGTGCTGC | + |
|
Preference number: 3 (lower is better) Translates to: RLILNAQRPTCL*LLSAGIKSMCC Trigger: GCAGCACATGCTTTTAATACCAGCACTCAGGAGGCAGAGGCAGGTGGGTCTCTGTGCATTCAAGATCAGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR CCA 72 bp | CAGTGTGCCTGGCTACTCTGGGACGAGGATACACAGTaGGATTTCAGGTTTGACAGCTTAACACCCCAAGGT | + |
|
Preference number: 3 (lower is better) Translates to: QCAWLLWDEDTQ*DFRFDSLTPQG Trigger: ACCTTGGGGTGTTAAGCTGTCAAACCTGAAATCCCACTGTGTATCCTCGTCCCAGAGTAGCCAGGCACACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR CCA 72 bp | AACTCTGAGGAGCGCAAAGTTTGCCCCTGGAGGTCCTaGCACAGTAGCTGTGACATCCCACTTCATACAAGA | + |
|
Preference number: 3 (lower is better) Translates to: NSEERKVCPWRS*HSSCDIPLHTR Trigger: TCTTGTATGAAGTGGGATGTCACAGCTACTGTGCCAGGACCTCCAGGGGCAAACTTTGCGCTCCTCAGAGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR GCA 72 bp | CATCCTTGTCCCATAAATCCAAGGCTTTGTCGTGCCTaGTTCCCAGATGCCCACCTGAAGGAAGTCTACAGT | + |
|
Preference number: 3 (lower is better) Translates to: HPCPINPRLCRA*FPDAHLKEVYS Trigger: ACTGTAGACTTCCTTCAGGTGGGCATCTGGGAAGCAGGCACGACAAAGCCTTGGATTTATGGGACAAGGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR GCA 72 bp | AGACCATCCTTGTCCCATAAATCCAAGGCTTTGTCGTaGCTGCTTCCCAGATGCCCACCTGAAGGAAGTCTA | + |
|
Preference number: 3 (lower is better) Translates to: RPSLSHKSKALS*LLPRCPPEGSL Trigger: TAGACTTCCTTCAGGTGGGCATCTGGGAAGCAGGCACGACAAAGCCTTGGATTTATGGGACAAGGATGGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR-3UTR CAA 90 bp | TGGCACAGTAGCTGTGACATCCCACTTCATACAAGAGGCTCCAGGAAGATGACATTTAATCCCAGCACTTaGGAAGCAGAGGCAGGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: WHSSCDIPLHTRGSRKMTFNPST*EAEAGR Trigger: TCTGCCTGCCTCTGCTTCCAAAGTGCTGGGATTAAA...TGTCATCTTCCTGGAGCCTCTTGTATGAAGTGGGATGTCACAGCTACTGTGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR GCA 72 bp | AAAAACCCAAAACATTTGTGTGGTTGCAAGCCAGTGTaGCTGGCTACTCTGGGACGAGGATACACAGTGGGA | + |
|
Preference number: 3 (lower is better) Translates to: KNPKHLCGCKPV*LATLGRGYTVG Trigger: TCCCACTGTGTATCCTCGTCCCAGAGTAGCCAGGCACACTGGCTTGCAACCACACAAATGTTTTGGGTTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR CCA 72 bp | AGGCTCCAGGAAGATGACAGTCATGAGGAGAGAAGGTaGAAGACGTTGTACTGGCAGCACTTGATAGGCTAT | + |
|
Preference number: 3 (lower is better) Translates to: RLQEDDSHEERR*KTLYWQHLIGY Trigger: ATAGCCTATCAAGTGCTGCCAGTACAACGTCTTCCACCTTCTCTCCTCATGACTGTCATCTTCCTGGAGCCT 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR CCA 72 bp | CCCAAAGGTTATGAAGGAAGGTTTCCTAGCAGCCCTTaGCCTGCTGTGCAAAGATGCTACACCACCTTCATT | + |
|
Preference number: 3 (lower is better) Translates to: PKGYEGRFPSSP*PAVQRCYTTFI Trigger: AATGAAGGTGGTGTAGCATCTTTGCACAGCAGGCCAAGGGCTGCTAGGAAACCTTCCTTCATAACCTTTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR TCA 72 bp | GCAGATCTCTGTGTTCTAGGCCAATCAGAGCTACAGTaGGACCCTGTCTCAAAAACCCAAAACATTTGTGTG | + |
|
Preference number: 3 (lower is better) Translates to: ADLCVLGQSELQ*DPVSKTQNICV Trigger: CACACAAATGTTTTGGGTTTTTGAGACAGGGTCTCACTGTAGCTCTGATTGGCCTAGAACACAGAGATCTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR CCA 72 bp | AAGATGCTACACCACCTTCATTTGTTCTTCATTCCATaGGGTTTATCTGCCTTCACCAACCCCACATGGAAG | + |
|
Preference number: 3 (lower is better) Translates to: KMLHHLHLFFIP*GLSAFTNPTWK Trigger: CTTCCATGTGGGGTTGGTGAAGGCAGATAAACCCCATGGAATGAAGAACAAATGAAGGTGGTGTAGCATCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR-3UTR CAA 90 bp | CACTGTTTCTTTACTGCAGCAAGAGACCATCCTTGTCCCATAAATCCAAGGCTTAAAAACCCAAAACATTaGTGTGGTTGCAAGCCAGTG | + |
|
Preference number: 3 (lower is better) Translates to: HCFFTAARDHPCPINPRLKNPKH*CGCKPV Trigger: CACTGGCTTGCAACCACACAAATGTTTTGGGTTTTT...AAGCCTTGGATTTATGGGACAAGGATGGTCTCTTGCTGCAGTAAAGAAACAGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR TCA 72 bp | ACAATAAAAGGGATCATTTATATCAGAAGGGTCCTGTaGCCATGCTTTCGGTTAAAGGTGGTGGTGGGAATT | + |
|
Preference number: 3 (lower is better) Translates to: TIKGIIYIRRVL*PCFRLKVVVGI Trigger: AATTCCCACCACCACCTTTAACCGAAAGCATGGTCACAGGACCCTTCTGATATAAATGATCCCTTTTATTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| CDS-3UTR CCA 90 bp | CAGAGCCTTATGCCTGAAACCTGTGTGAGGGAGCCTCATCCTCTCCCACCCCGCCTTCATGAGAGGGGGTaGCCTGGGCGGCTCCGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: QSLMPETCVREPHPLPPRLHERG*PGRLRQ Trigger: CTGCCGGAGCCGCCCAGGCCACCCCCTCTCATGAAG...GCGGGGTGGGAGAGGATGAGGCTCCCTCACACAGGTTTCAGGCATAAGGCTCTG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR TCA 90 bp | GAAACCTGTGTGAGGGAGCCTCATCCTCTCCCACCCCGCGCCCCCGGGTTAATCCAGGTCTCCTTCACCTaGGCCCGCAAGCTAAAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: ETCVREPHPLPPRAPGLIQVSFT*ARKLKD Trigger: GTCCTTTAGCTTGCGGGCTCAGGTGAAGGAGACCTG...GATTAACCCGGGGGCGCGGGGTGGGAGAGGATGAGGCTCCCTCACACAGGTTTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR GCA 90 bp | AACCTGTGTGAGGGAGCCTCATCCTCTCCCACCCCGCGCCCCCGGGTTAATCTCCCGTGCTGCTGCCACTaGTGCCTTTGGCTTCATGAG | + |
|
Preference number: 4 (lower is better) Translates to: NLCEGASSSPTPRPRVNLPCCCH*CLWLHE Trigger: CTCATGAAGCCAAAGGCAGCAGTGGCAGCAGCACGG...GAGATTAACCCGGGGGCGCGGGGTGGGAGAGGATGAGGCTCCCTCACACAGGTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR TCA 90 bp | TGGTTCCCAACGCCAACCTCCCATGGGAAAAGTAAGGAATCCTGGAGCAGAGCCCTGCCTTTGGCTTCATaGGAGGGGGTGGCCTGGGCG | + |
|
Preference number: 4 (lower is better) Translates to: WFPTPTSHGKSKESWSRALPLAS*EGVAWA Trigger: CGCCCAGGCCACCCCCTCTCATGAAGCCAAAGGCAG...GGCTCTGCTCCAGGATTCCTTACTTTTCCCATGGGAGGTTGGCGTTGGGAACCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR GCA 90 bp | CAGAGCCTTATGCCTGAAACCTGTGTGAGGGAGCCTCATCCTCTCCCACCCCGCCCGTGCTGCTGCCACTaGTGCCTTTGGCTTCATGAG | + |
|
Preference number: 4 (lower is better) Translates to: QSLMPETCVREPHPLPPRPCCCH*CLWLHE Trigger: CTCATGAAGCCAAAGGCAGCAGTGGCAGCAGCACGG...GCGGGGTGGGAGAGGATGAGGCTCCCTCACACAGGTTTCAGGCATAAGGCTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR GCA 90 bp | TGTGTGAGGGAGCCTCATCCTCTCCCACCCCGCGCCCCCGGGTTAATCTCCTTTGAAAATGAGCTTGTCTaGCACCAGCCGCTCCATCGG | + |
|
Preference number: 4 (lower is better) Translates to: CVREPHPLPPRAPGLISFENELV*HQPLHR Trigger: CCGATGGAGCGGCTGGTGGCAGACAAGCTCATTTTC...AAAGGAGATTAACCCGGGGGCGCGGGGTGGGAGAGGATGAGGCTCCCTCACACA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR TCA 90 bp | TGTCCCATAAATCCAAGGCTTTGTCGTGCCTGCTTCCCAGATGCCCACCTGAAGGGCCGTCTTGGTGCCTaGGTCCACCTCCTTGTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: CPINPRLCRACFPDAHLKGRLGA*VHLLVG Trigger: GCCCACAAGGAGGTGGACTCAGGCACCAAGACGGCC...CTTCAGGTGGGCATCTGGGAAGCAGGCACGACAAAGCCTTGGATTTATGGGACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| CDS-3UTR GCA 90 bp | AGCCTTATGCCTGAAACCTGTGTGAGGGAGCCTCATCCTCTCCCACCCCGCGCCGCCCAGAGCTCCTTGTaGTGTTTACGACCAAACCCT | + |
|
Preference number: 4 (lower is better) Translates to: SLMPETCVREPHPLPPRAAQSSL*CLRPNP Trigger: AGGGTTTGGTCGTAAACAGCACAAGGAGCTCTGGGC...GGCGCGGGGTGGGAGAGGATGAGGCTCCCTCACACAGGTTTCAGGCATAAGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR CCA 90 bp | GTGGCATCTATGAGGCCCAGTAGATGGCACTCTCCCTCTTCCAGTCTCTGTGGCGAGTCCACCTCCTTGTaGGCCCAGAGCTCCTTGTGC | + |
|
Preference number: 4 (lower is better) Translates to: VASMRPSRWHSPSSSLCGESTSL*AQSSLC Trigger: GCACAAGGAGCTCTGGGCCCACAAGGAGGTGGACTC...GCCACAGAGACTGGAAGAGGGAGAGTGCCATCTACTGGGCCTCATAGATGCCAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| CDS-3UTR CCA 90 bp | ACCTCCCATGGGAAAAGTAAGGAATCCTGGAGCAGAGCCTTATGCCTGAAACCTCTTCATGAGAGGGGGTaGCCTGGGCGGCTCCGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: TSHGKSKESWSRALCLKPLHERG*PGRLRQ Trigger: CTGCCGGAGCCGCCCAGGCCACCCCCTCTCATGAAG...AGGTTTCAGGCATAAGGCTCTGCTCCAGGATTCCTTACTTTTCCCATGGGAGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR TCA 90 bp | GGACACAGTATGGTGAAAATTCCAATTCTGGTTCCCAACGCCAACCTCCCATGGCTGCCTTTGGCTTCATaGGAGGGGGTGGCCTGGGCG | + |
|
Preference number: 4 (lower is better) Translates to: GHSMVKIPILVPNANLPWLPLAS*EGVAWA Trigger: CGCCCAGGCCACCCCCTCTCATGAAGCCAAAGGCAG...CCATGGGAGGTTGGCGTTGGGAACCAGAATTGGAATTTTCACCATACTGTGTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR TCA 90 bp | GAGCCGTGGGGTGAGATGAGGTGGACTAAAGGACACAGTATGGTGAAAATTCCAGGCCGTCTTGGTGCCTaGGTCCACCTCCTTGTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: EPWGEMRWTKGHSMVKIPGRLGA*VHLLVG Trigger: GCCCACAAGGAGGTGGACTCAGGCACCAAGACGGCC...TGGAATTTTCACCATACTGTGTCCTTTAGTCCACCTCATCTCACCCCACGGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR GCA 90 bp | AACCTGTGTGAGGGAGCCTCATCCTCTCCCACCCCGCGCCCCCGGGTTAATCTCGCTGAAAGTGAGGTCTaGAGTAAAATTCACCGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: NLCEGASSSPTPRPRVNLAESEV*SKIHRA Trigger: TGCACGGTGAATTTTACTGCAGACCTCACTTTCAGC...GAGATTAACCCGGGGGCGCGGGGTGGGAGAGGATGAGGCTCCCTCACACAGGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR GCA 90 bp | AGCCTTATGCCTGAAACCTGTGTGAGGGAGCCTCATCCTCTCCCACCCCGCGCCGCTGAAAGTGAGGTCTaGAGTAAAATTCACCGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: SLMPETCVREPHPLPPRAAESEV*SKIHRA Trigger: TGCACGGTGAATTTTACTGCAGACCTCACTTTCAGC...GGCGCGGGGTGGGAGAGGATGAGGCTCCCTCACACAGGTTTCAGGCATAAGGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR GCA 90 bp | ACCCAAAACATTTGTGTGGTTGCAAGCCAGTGTGCCTGGCTACTCTGGGACGAGTGCTGCTGCCACTGCTaGCTTTGGCTTCATGAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: TQNICVVASQCAWLLWDECCCHC*LWLHER Trigger: CCTCTCATGAAGCCAAAGGCAGCAGTGGCAGCAGCA...CTCGTCCCAGAGTAGCCAGGCACACTGGCTTGCAACCACACAAATGTTTTGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| CDS-3UTR GCA 90 bp | GACAGTCATGAGGAGAGAAGGTGGAAGACGTTGTACTGGCAGCACTTGATAGGCGCTGTACCGTGCTGCTaGCACTGCTGCCTTTGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: DSHEERRWKTLYWQHLIGAVPCC*HCCLWL Trigger: AAGCCAAAGGCAGCAGTGGCAGCAGCACGGTACAGC...GCCTATCAAGTGCTGCCAGTACAACGTCTTCCACCTTCTCTCCTCATGACTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| CDS-3UTR GCA 90 bp | TGGTTCCCAACGCCAACCTCCCATGGGAAAAGTAAGGAATCCTGGAGCAGAGCCGCCCAGAGCTCCTTGTaGTGTTTACGACCAAACCCT | + |
|
Preference number: 4 (lower is better) Translates to: WFPTPTSHGKSKESWSRAAQSSL*CLRPNP Trigger: AGGGTTTGGTCGTAAACAGCACAAGGAGCTCTGGGC...GGCTCTGCTCCAGGATTCCTTACTTTTCCCATGGGAGGTTGGCGTTGGGAACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR CCA 90 bp | CTTTCCACTGCCCAGCGGGAGGCCATGTGCTGGGAGGGAATGGGTGTTAAAGGGAGGCTGAGTTTGGTGTaGCAGTGTTTGCAACAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: LSTAQREAMCWEGMGVKGRLSLV*QCLQQK Trigger: TTTCTGTTGCAAACACTGCCACACCAAACTCAGCCT...CCCTTTAACACCCATTCCCTCCCAGCACATGGCCTCCCGCTGGGCAGTGGAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR TCA 90 bp | CTGTCTCAAAAACCCAAAACATTTGTGTGGTTGCAAGCCAGTGTGCCTGGCTACCAGGTCTCCTTCACCTaGGCCCGCAAGCTAAAGGAC | + |
|
Preference number: 4 (lower is better) Translates to: LSQKPKTFVWLQASVPGYQVSFT*ARKLKD Trigger: GTCCTTTAGCTTGCGGGCTCAGGTGAAGGAGACCTG...GTAGCCAGGCACACTGGCTTGCAACCACACAAATGTTTTGGGTTTTTGAGACAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| CDS-3UTR GCA 90 bp | ACCTCCCATGGGAAAAGTAAGGAATCCTGGAGCAGAGCCTTATGCCTGAAACCTTGCTGCTGCCACTGCTaGCTTTGGCTTCATGAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: TSHGKSKESWSRALCLKPCCCHC*LWLHER Trigger: CCTCTCATGAAGCCAAAGGCAGCAGTGGCAGCAGCA...AGGTTTCAGGCATAAGGCTCTGCTCCAGGATTCCTTACTTTTCCCATGGGAGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR GCA 90 bp | GGACACAGTATGGTGAAAATTCCAATTCTGGTTCCCAACGCCAACCTCCCATGGGAAAATGAGCTTGTCTaGCACCAGCCGCTCCATCGG | + |
|
Preference number: 4 (lower is better) Translates to: GHSMVKIPILVPNANLPWENELV*HQPLHR Trigger: CCGATGGAGCGGCTGGTGGCAGACAAGCTCATTTTC...CCATGGGAGGTTGGCGTTGGGAACCAGAATTGGAATTTTCACCATACTGTGTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR TCA 90 bp | ACCTCCCATGGGAAAAGTAAGGAATCCTGGAGCAGAGCCTTATGCCTGAAACCTAAGAGTTGTGGAAAATaGGCTTGTCTGCCACCAGCC | + |
|
Preference number: 4 (lower is better) Translates to: TSHGKSKESWSRALCLKPKSCGK*ACLPPA Trigger: GGCTGGTGGCAGACAAGCTCATTTTCCACAACTCTT...AGGTTTCAGGCATAAGGCTCTGCTCCAGGATTCCTTACTTTTCCCATGGGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| 3UTR CAA 72 bp | CAGCCACTGTTTCTTTACTGCAGCAAGAGACCATCCTaGTCCCATAAATCCAAGGCTTTGTCGTGCCTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: QPLFLYCSKRPS*SHKSKALSCLL Trigger: AAGCAGGCACGACAAAGCCTTGGATTTATGGGACAAGGATGGTCTCTTGCTGCAGTAAAGAAACAGTGGCTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR CAA 72 bp | GTTAAAGGTGGTGGTGGGAATTTTTACAGGGATGGGTaGGGTACAATGCCTAACACCCAAGTTGAGGCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: VKGGGGNFYRDG*GTMPNTQVEAS Trigger: AGAGGCCTCAACTTGGGTGTTAGGCATTGTACCCAACCCATCCCTGTAAAAATTCCCACCACCACCTTTAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| CDS-3UTR CCA 90 bp | GCCCAGCCACTGTTTCTTTACTGCAGCAAGAGACCATCCTTGTCCCATAAATCCAGGCTGAGTTTGGTGTaGCAGTGTTTGCAACAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: AQPLFLYCSKRPSLSHKSRLSLV*QCLQQK Trigger: TTTCTGTTGCAAACACTGCCACACCAAACTCAGCCT...GGATTTATGGGACAAGGATGGTCTCTTGCTGCAGTAAAGAAACAGTGGCTGGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| 3UTR CAA 72 bp | TTGGCCTGCTGTGCAAAGATGCTACACCACCTTCATTaGTTCTTCATTCCATGGGGTTTATCTGCCTTCACC | + |
|
Preference number: 4 (lower is better) Translates to: LACCAKMLHHLH*FFIPWGLSAFT Trigger: GGTGAAGGCAGATAAACCCCATGGAATGAAGAACAAATGAAGGTGGTGTAGCATCTTTGCACAGCAGGCCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| CDS-3UTR CAA 90 bp | GAAACCTGTGTGAGGGAGCCTCATCCTCTCCCACCCCGCGCCCCCGGGTTAATCTTGTGGAAAATGAGCTaGTCTGCCACCAGCCGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: ETCVREPHPLPPRAPGLILWKMS*SATSRS Trigger: GGAGCGGCTGGTGGCAGACAAGCTCATTTTCCACAA...GATTAACCCGGGGGCGCGGGGTGGGAGAGGATGAGGCTCCCTCACACAGGTTTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR CAA 90 bp | GAGGGAGCCTCATCCTCTCCCACCCCGCGCCCCCGGGTTAATCTCCTTTCCACTCTGCCCAGGCTGAGTTaGGTGTGGCAGTGTTTGCAA | + |
|
Preference number: 5 (lower is better) Translates to: EGASSSPTPRPRVNLLSTLPRLS*VWQCLQ Trigger: TTGCAAACACTGCCACACCAAACTCAGCCTGGGCAG...AGTGGAAAGGAGATTAACCCGGGGGCGCGGGGTGGGAGAGGATGAGGCTCCCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS TCA 90 bp | ATCGGGTACACAGTCTTCTGGCAGGCTGCACAGGTCTCCTTCACCTaGGCCCGCAAGCTAAAGGACTTAGACCGCTGTACCGTGCTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: IGYTVFWQAAQVSFT*ARKLKDLDRCTVLL Trigger: CAGCAGCACGGTACAGCGGTCTAAGTCCTTTAGCTTGCGGGCTCAGGTGAAGGAGACCTGTGCAGCCTGCCAGAAGACTGTGTACCCGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 ENSMUST00000106875.2 |
||
| CDS-3UTR CAA 90 bp | ATCTCCTTTCCACTGCCCAGCGGGAGGCCATGTGCTGGGAGGGAATGGGTGTTATTGTGGAAAATGAGCTaGTCTGCCACCAGCCGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: ISFPLPSGRPCAGREWVLLWKMS*SATSRS Trigger: GGAGCGGCTGGTGGCAGACAAGCTCATTTTCCACAA...TAACACCCATTCCCTCCCAGCACATGGCCTCCCGCTGGGCAGTGGAAAGGAGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR CAA 90 bp | GAGCATCTTCACACTTGCCTTGTGCTTCTGCTGTGTGATGTCGTCCCTCAGTGTCCTGAGTCCACCTCCTaGTGGGCCCAGAGCTCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: EHLHTCLVLLLCDVVPQCPESTS*WAQSSL Trigger: CAAGGAGCTCTGGGCCCACAAGGAGGTGGACTCAGG...ACACTGAGGGACGACATCACACAGCAGAAGCACAAGGCAAGTGTGAAGATGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
||
| CDS-3UTR CAA 90 bp | TGGTTCCCAACGCCAACCTCCCATGGGAAAAGTAAGGAATCCTGGAGCAGAGCCTGGGCCCAGAGCTCCTaGTGCTGTTTACGACCAAAC | + |
|
Preference number: 5 (lower is better) Translates to: WFPTPTSHGKSKESWSRAWAQSS*CCLRPN Trigger: GTTTGGTCGTAAACAGCACAAGGAGCTCTGGGCCCA...GGCTCTGCTCCAGGATTCCTTACTTTTCCCATGGGAGGTTGGCGTTGGGAACCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
||
| CDS-3UTR CAA 90 bp | GAGCCGTGGGGTGAGATGAGGTGGACTAAAGGACACAGTATGGTGAAAATTCCACCTGAGTCCACCTCCTaGTGGGCCCAGAGCTCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: EPWGEMRWTKGHSMVKIPPESTS*WAQSSL Trigger: CAAGGAGCTCTGGGCCCACAAGGAGGTGGACTCAGG...TGGAATTTTCACCATACTGTGTCCTTTAGTCCACCTCATCTCACCCCACGGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
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| CDS-3UTR CAA 90 bp | GAGGGAGCCTCATCCTCTCCCACCCCGCGCCCCCGGGTTAATCTCCTTTCCACTCAACAGAAACAAGAGTaGTGGAAAATGAGCTTGTCT | + |
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Preference number: 5 (lower is better) Translates to: EGASSSPTPRPRVNLLSTQQKQE*WKMSLS Trigger: AGACAAGCTCATTTTCCACAACTCTTGTTTCTGTTG...AGTGGAAAGGAGATTAACCCGGGGGCGCGGGGTGGGAGAGGATGAGGCTCCCTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
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| CDS-3UTR CAA 90 bp | GCCCAGCCACTGTTTCTTTACTGCAGCAAGAGACCATCCTTGTCCCATAAATCCCTGCCCAGGCTGAGTTaGGTGTGGCAGTGTTTGCAA | + |
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Preference number: 5 (lower is better) Translates to: AQPLFLYCSKRPSLSHKSLPRLS*VWQCLQ Trigger: TTGCAAACACTGCCACACCAAACTCAGCCTGGGCAG...GGATTTATGGGACAAGGATGGTCTCTTGCTGCAGTAAAGAAACAGTGGCTGGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| CDS-3UTR CAA 90 bp | ATCTCCTTTCCACTGCCCAGCGGGAGGCCATGTGCTGGGAGGGAATGGGTGTTACAACAGAAACAAGAGTaGTGGAAAATGAGCTTGTCT | + |
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Preference number: 5 (lower is better) Translates to: ISFPLPSGRPCAGREWVLQQKQE*WKMSLS Trigger: AGACAAGCTCATTTTCCACAACTCTTGTTTCTGTTG...TAACACCCATTCCCTCCCAGCACATGGCCTCCCGCTGGGCAGTGGAAAGGAGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 |
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| CDS GCA 90 bp | AAACAGCTGCTGAAAGTGAGGTCTGCAGTAAAATTCACCGTGCATTaGAGCATAACTGCCCAGGCTGAGTTTGGTGTGGCAGTGTTTGCA | + |
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Preference number: 5 (lower is better) Translates to: KQLLKVRSAVKFTVH*SITAQAEFGVAVFA Trigger: TGCAAACACTGCCACACCAAACTCAGCCTGGGCAGTTATGCTGCAATGCACGGTGAATTTTACTGCAGACCTCACTTTCAGCAGCTGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 ENSMUST00000106875.2 |
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| CDS-3UTR CAA 90 bp | CACTGTTTCTTTACTGCAGCAAGAGACCATCCTTGTCCCATAAATCCAAGGCTTTGGGCCCAGAGCTCCTaGTGCTGTTTACGACCAAAC | + |
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Preference number: 5 (lower is better) Translates to: HCFFTAARDHPCPINPRLWAQSS*CCLRPN Trigger: GTTTGGTCGTAAACAGCACAAGGAGCTCTGGGCCCA...AAGCCTTGGATTTATGGGACAAGGATGGTCTCTTGCTGCAGTAAAGAAACAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| CDS-3UTR CAA 90 bp | CTGTCTCAAAAACCCAAAACATTTGTGTGGTTGCAAGCCAGTGTGCCTGGCTACTTGGTGTGGCAGTGTTaGCAACAGAAACAAGAGTTG | + |
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Preference number: 5 (lower is better) Translates to: LSQKPKTFVWLQASVPGYLVWQC*QQKQEL Trigger: CAACTCTTGTTTCTGTTGCAAACACTGCCACACCAA...GTAGCCAGGCACACTGGCTTGCAACCACACAAATGTTTTGGGTTTTTGAGACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045923.10 |
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| CDS TCA 72 bp | ACAGTCTTCTGGCAGGCTGCACAGGTCTCCTTCACCTaGGCCCGCAAGCTAAAGGACTTAGACCGCTGTACC | + |
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Preference number: 6 (lower is better) Translates to: TVFWQAAQVSFT*ARKLKDLDRCT Trigger: GGTACAGCGGTCTAAGTCCTTTAGCTTGCGGGCTCAGGTGAAGGAGACCTGTGCAGCCTGCCAGAAGACTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 ENSMUST00000106875.2 |
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| CDS GCA 72 bp | CTGAAAGTGAGGTCTGCAGTAAAATTCACCGTGCATTaGAGCATAACTGCCCAGGCTGAGTTTGGTGTGGCA | + |
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Preference number: 6 (lower is better) Translates to: LKVRSAVKFTVH*SITAQAEFGVA Trigger: TGCCACACCAAACTCAGCCTGGGCAGTTATGCTGCAATGCACGGTGAATTTTACTGCAGACCTCACTTTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 ENSMUST00000106875.2 |
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| CDS TCA 72 bp | AAAATTCACCGTGCATTGCAGCATAACTGCCCAGGCTaGGTTTGGTGTGGCAGTGTTTGCAACAGAAACAAG | + |
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Preference number: 6 (lower is better) Translates to: KIHRALQHNCPG*VWCGSVCNRNK Trigger: CTTGTTTCTGTTGCAAACACTGCCACACCAAACTCAGCCTGGGCAGTTATGCTGCAATGCACGGTGAATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000045923.10 ENSMUST00000064545.11 ENSMUST00000106875.2 |
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