RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LIMA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000023022

Ensembl transcript IDs: ENSMUST00000073691.5, ENSMUST00000109024.9, ENSMUST00000231121.2

Found 289 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CGGTCTGCATCAGCTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTaGCCATGCTGCGTGCGCGCGTGGCCTGTGTGTGACCCGTGGCCT +
Preference number: 1 (lower is better)
Translates to: RSASALASGFWPRFP*PCCVRAWPVCDPWP
Trigger: AGGCCACGGGTCACACACAGGCCACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAGCTGATGCAGACCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR GCA 90 bp CCCTGGCTGTCCTGGAACTCAGAGAGACCCACCTGCCTCTGCCTCTaGCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACCACCACA +
Preference number: 1 (lower is better)
Translates to: PWLSWNSERPTCLCL*LPSGVLGLKVFTTT
Trigger: TGTGGTGGTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTGGGTCTCTCTGAGTTCCAGGACAGCCAGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR GCA 90 bp CGTGATCCAAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTaGGAGAAACCACCAGAAGAGATGGCAAACACCCAGAGTGCAGGG +
Preference number: 1 (lower is better)
Translates to: RDPKGLTATLQLSAK*EKPPEEMANTQSAG
Trigger: CCCTGCACTCTGGGTGTTTGCCATCTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTTGGATCACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR TCA 90 bp TGGCCTAAAAATCAATACATTTCAGAGCCAAGATTCGCCTCGACCTaGGGCTTCCCAGCTCTGATCTCAGGTTGTTTTACTTGGAGCATG +
Preference number: 1 (lower is better)
Translates to: WPKNQYISEPRFAST*GFPALISGCFTWSM
Trigger: CATGCTCCAAGTAAAACAACCTGAGATCAGAGCTGGGAAGCCTCAGGTCGAGGCGAATCTTGGCTCTGAAATGTATTGATTTTTAGGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR TCA 90 bp ATGGCAGGCAGCATCAGTGAGAGAAATCCCTACTTAGCCCTTCCCTaGAAAAATGGAGGGATTTGTTTGTTTGTTTGTTTTGAGGCAAGG +
Preference number: 1 (lower is better)
Translates to: MAGSISERNPYLALP*KNGGICLFVCFEAR
Trigger: CCTTGCCTCAAAACAAACAAACAAACAAATCCCTCCATTTTTTCAGGGAAGGGCTAAGTAGGGATTTCTCTCACTGATGCTGCCTGCCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR TCA 90 bp AAATGTGTTGTGTGTGTCTCTAATTCCACAATGGTCTCTGTAGTGTaGAAACAAGCCTCTAAATATCTAACCACACCAATCTTGATTTGG +
Preference number: 1 (lower is better)
Translates to: KCVVCVSNSTMVSVV*KQASKYLTTPILIW
Trigger: CCAAATCAAGATTGGTGTGGTTAGATATTTAGAGGCTTGTTTTCACACTACAGAGACCATTGTGGAATTAGAGACACACACAACACATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTGGGGAATGCAGTGGATaGCAGGCAGCATCAGTGAGA +
Preference number: 2 (lower is better)
Translates to: LLPLGSGLASLDHAACARGECSG*QAASVR
Trigger: TCTCACTGATGCTGCCTGCCATCCACTGCATTCCCC...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTGATGATGGGCACGTGTaGACAGCTCTGTGCAGTCTG +
Preference number: 2 (lower is better)
Translates to: LLPLGSGLASLDHAACARDDGHV*TALCSL
Trigger: CAGACTGCACAGAGCTGTCCACACGTGCCCATCATC...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR GCA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTGTGTGGACAGCTCTGTaGAGTCTGCTCTCTCACCTT +
Preference number: 2 (lower is better)
Translates to: LLPLGSGLASLDHAACARVWTAL*SLLSHL
Trigger: AAGGTGAGAGAGCAGACTGCACAGAGCTGTCCACAC...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATGAGCAGTGTCACCCCTaGCCAGGTGGCCCTGGGTGG +
Preference number: 2 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDEQCHP*PGGPGW
Trigger: CCACCCAGGGCCACCTGGCCAGGGGTGACACTGCTC...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR GCA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTACCTGCCTCTGCCTCTaGCTCCCGAGTGGAGTGCTG +
Preference number: 2 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATTCLCL*LPSGVL
Trigger: CAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGT...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR GCA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTAGACCCACCTGCCTCTaGCTCTGCCTCCCGAGTGGA +
Preference number: 2 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATRPTCL*LCLPSG
Trigger: TCCACTCGGGAGGCAGAGGCAGAGGCAGGTGGGTCT...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR GCA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATGTCTGCATCAGCTCTTaGCTCTGGGTTCTGGCCTCG +
Preference number: 2 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDVCISS*LWVLAS
Trigger: CGAGGCCAGAACCCAGAGGCAAGAGCTGATGCAGAC...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR TCA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTGTAGGTTTTGGGGATTaGACACTGCTGCTCCGGCTT +
Preference number: 2 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATVGFGD*TLLLRL
Trigger: AAGCCGGAGCAGCAGTGTTCAATCCCCAAAACCTAC...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR GCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGACCCACCTGCCTCTaGCTCTGCCTCCCGAGTGGA +
Preference number: 2 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRRPTCL*LCLPSG
Trigger: TCCACTCGGGAGGCAGAGGCAGAGGCAGGTGGGTCT...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR TCA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTATGGTCTCTGTAGTGTaGAAACAAGCCTCTAAATAT +
Preference number: 2 (lower is better)
Translates to: LLPLGSGLASLDHAACARMVSVV*KQASKY
Trigger: ATATTTAGAGGCTTGTTTTCACACTACAGAGACCAT...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR GCA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATTTGGGGATTGAACACTaGTGCTCCGGCTTCAGTAAC +
Preference number: 2 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDLGIEH*CSGFSN
Trigger: GTTACTGAAGCCGGAGCAGCAGTGTTCAATCCCCAA...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCCCAGCGCCTTTCACTTaGCCAAAGGTTGCTGTTTTG +
Preference number: 2 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISPAPFT*PKVAVL
Trigger: CAAAACAGCAACCTTTGGCCAAGTGAAAGGCGCTGG...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATCCAGCGCCTTTCACTTaGCCAAAGGTTGCTGTTTTG +
Preference number: 2 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDPAPFT*PKVAVL
Trigger: CAAAACAGCAACCTTTGGCCAAGTGAAAGGCGCTGG...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCTGCAGGGAGACACACTaGCATTCGCCACTGATTATC +
Preference number: 2 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISCRETH*HSPLII
Trigger: GATAATCAGTGGCGAATGCCAGTGTGTCTCCCTGCA...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCACCTGTGTGTGACCCGTaGCCTGTGAGTGGAGACAAA +
Preference number: 2 (lower is better)
Translates to: KALIPEKTIYPPLGLPASPVCDP*PVSGDK
Trigger: TTTGTCTCCACTCACAGGCCACGGGTCACACACAGG...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR CAA 90 bp TGCTGCTCCGGCTTCAGTAACCAGCGCCTTTCACTTGGCCAAAGGTaGCTGTTTTGTGCCTCAGTGATTAAAAATACAGGATGTAGGATG +
Preference number: 2 (lower is better)
Translates to: CCSGFSNQRLSLGQR*LFCASVIKNTGCRM
Trigger: CATCCTACATCCTGTATTTTTAATCACTGAGGCACAAAACAGCAACCTTTGGCCAAGTGAAAGGCGCTGGTTACTGAAGCCGGAGCAGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTCACATGAATGACCCTTaGCGCCAAGCTGCCTGTTTC +
Preference number: 2 (lower is better)
Translates to: TTTPGLKDHWCFDNALRIHMNDP*RQAACF
Trigger: GAAACAGGCAGCTTGGCGCCAAGGGTCATTCATGTG...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGGGCTTAAAAGATCACTaGTGTTTTGACAATGCGCTT +
Preference number: 2 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEGLKDH*CFDNAL
Trigger: AAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCC...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR TCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGATACTTAGCCCTTCCCTaGAAAAATGGAGGGATTTGT +
Preference number: 2 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRYLALP*KNGGIC
Trigger: ACAAATCCCTCCATTTTTTCAGGGAAGGGCTAAGTA...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR TCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAATACAGGATGTAGGATaGAAGACAGTAAGCTTTCCC +
Preference number: 2 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRIQDVG*KTVSFP
Trigger: GGGAAAGCTTACTGTCTTTCATCCTACATCCTGTAT...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR TCA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCAAGTAAGCCACAGAGATaGAGTCAGCAAGCAGTGTTC +
Preference number: 2 (lower is better)
Translates to: KALIPEKTIYPPLGLPASSKPQR*SQQAVF
Trigger: GAACACTGCTTGCTGACTTCATCTCTGTGGCTTACT...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp GGTGTTTTGACAATGCGCTTAGAATTGGTTTTGGGTGAGTTTGTTTGTCTGTTTCACATGAATGACCCTTaGCGCCAAGCTGCCTGTTTC +
Preference number: 2 (lower is better)
Translates to: GVLTMRLELVLGEFVCLFHMNDP*RQAACF
Trigger: GAAACAGGCAGCTTGGCGCCAAGGGTCATTCATGTG...AAACAGACAAACAAACTCACCCAAAACCAATTCTAAGCGCATTGTCAAAACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCAACACCAATCTTGATTTaGGGAATGCAGTGGATGGCA +
Preference number: 2 (lower is better)
Translates to: KALIPEKTIYPPLGLPASTPILI*GMQWMA
Trigger: TGCCATCCACTGCATTCCCCAAATCAAGATTGGTGT...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR TCA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCATACTTAGCCCTTCCCTaGAAAAATGGAGGGATTTGT +
Preference number: 2 (lower is better)
Translates to: KALIPEKTIYPPLGLPASYLALP*KNGGIC
Trigger: ACAAATCCCTCCATTTTTTCAGGGAAGGGCTAAGTA...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR TCA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTATGGTCTCTGTAGTGTaGAAACAAGCCTCTAAATAT +
Preference number: 2 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSMVSVV*KQASKY
Trigger: ATATTTAGAGGCTTGTTTTCACACTACAGAGACCAT...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp TATTCTAAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAAACCACCAGAAGAGATaGCAAACACCCAGAGTGCAG +
Preference number: 2 (lower is better)
Translates to: YSKALIPEKTIYPPLGLPNHQKR*QTPRVQ
Trigger: CTGCACTCTGGGTGTTTGCCATCTCTTCTGGTGGTT...TGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTTAGAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR CAA 90 bp TATCTGGGTACAATGTCCGTCTCTCCAAACACCAAAGTATATAGGTaGGTTCTCTGTCTCGCAGGTGTTTGTGAGGTTGGTTGTATTTTT +
Preference number: 2 (lower is better)
Translates to: YLGTMSVSPNTKVYR*VLCLAGVCEVGCIF
Trigger: AAAAATACAACCAACCTCACAAACACCTGCGAGACAGAGAACCAACCTATATACTTTGGTGTTTGGAGAGACGGACATTGTACCCAGATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCAGGCTTAAAAGATCACTaGTGTTTTGACAATGCGCTT +
Preference number: 2 (lower is better)
Translates to: KALIPEKTIYPPLGLPASGLKDH*CFDNAL
Trigger: AAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCC...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR CAA 90 bp TGCAAAGAGGCCACTACCTTAAGCCCACCCCGCCATACACATCATTaGGAATATCAGTTACATACAAGAACTGCACTCGTTTATAATATT +
Preference number: 2 (lower is better)
Translates to: CKEATTLSPPRHTHH*EYQLHTRTALVYNI
Trigger: AATATTATAAACGAGTGCAGTTCTTGTATGTAACTGATATTCCAAATGATGTGTATGGCGGGGTGGGCTTAAGGTAGTGGCCTCTTTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CCA 90 bp TATTCTAAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAACACCAATCTTGATTTaGGGAATGCAGTGGATGGCA +
Preference number: 2 (lower is better)
Translates to: YSKALIPEKTIYPPLGLPTPILI*GMQWMA
Trigger: TGCCATCCACTGCATTCCCCAAATCAAGATTGGTGT...TGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTTAGAATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR GCA 90 bp TATTCTAAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAATTCATTTCCAAAGTTaGTCCCACATGAATGACCCT +
Preference number: 2 (lower is better)
Translates to: YSKALIPEKTIYPPLGLPIHFQS*SHMNDP
Trigger: AGGGTCATTCATGTGGGAGCAACTTTGGAAATGAAT...TGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTTAGAATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR TCA 72 bp TCAGCTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTaGCCATGCTGCGTGCGCGCGTGGCCTGTGTGTGAC +
Preference number: 3 (lower is better)
Translates to: SALASGFWPRFP*PCCVRAWPVCD
Trigger: GTCACACACAGGCCACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAGCTGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR GCA 72 bp TGGCTGTCCTGGAACTCAGAGAGACCCACCTGCCTCTaGCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAG +
Preference number: 3 (lower is better)
Translates to: WLSWNSERPTCL*LCLPSGVLGLK
Trigger: CTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTGGGTCTCTCTGAGTTCCAGGACAGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTTCACTTGGCCAAAGGTaGCTGTTTTGTGCCTCAGTG +
Preference number: 3 (lower is better)
Translates to: LLPLGSGLASLDHAACARSLGQR*LFCASV
Trigger: CACTGAGGCACAAAACAGCAACCTTTGGCCAAGTGA...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTACCAGCGCCTTTCACTaGGCCAAAGGTTGCTGTTTT +
Preference number: 3 (lower is better)
Translates to: LLPLGSGLASLDHAACARTSAFH*AKGCCF
Trigger: AAAACAGCAACCTTTGGCCAAGTGAAAGGCGCTGGT...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR GCA 72 bp TCCTGGAACTCAGAGAGACCCACCTGCCTCTGCCTCTaGCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTT +
Preference number: 3 (lower is better)
Translates to: SWNSERPTCLCL*LPSGVLGLKVF
Trigger: AAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTGGGTCTCTCTGAGTTCCAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR CCA 72 bp CCTCCTCTGGGTTTACCAGCCTCACACAGAGTCACCTaGATGTGGGACTCAGCTGATGAACCGCCTCTAACC +
Preference number: 3 (lower is better)
Translates to: PPLGLPASHRVT*MWDSADEPPLT
Trigger: GGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGAGGCTGGTAAACCCAGAGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTACTTGTTTCTTATTGTaGATGATGGGCACGTGTGGA +
Preference number: 3 (lower is better)
Translates to: LLPLGSGLASLDHAACARTCFLL*MMGTCG
Trigger: TCCACACGTGCCCATCATCAACAATAAGAAACAAGT...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR GCA 72 bp AGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTaGATCAGCTCTTGCCTCTGGGTTCTGGCCTCGCTT +
Preference number: 3 (lower is better)
Translates to: RDEVSKQCSHTV*ISSCLWVLASL
Trigger: AAGCGAGGCCAGAACCCAGAGGCAAGAGCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR CCA 72 bp CTGGGTTTACCAGCCTCACACAGAGTCACCTGGATGTaGGACTCAGCTGATGAACCGCCTCTAACCGATGCA +
Preference number: 3 (lower is better)
Translates to: LGLPASHRVTWM*DSADEPPLTDA
Trigger: TGCATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGAGGCTGGTAAACCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCCGTAGGTTTTGGGGATaGAACACTGCTGCTCCGGCT +
Preference number: 3 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISRRFWG*NTAAPA
Trigger: AGCCGGAGCAGCAGTGTTCAATCCCCAAAACCTACG...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCCCCTTCCCCTCTGAGTaGCTCCTGCCCAGTGTTTTA +
Preference number: 3 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISPFPSE*LLPSVL
Trigger: TAAAACACTGGGCAGGAGCAACTCAGAGGGGAAGGG...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR TCA 72 bp TGGCCAGGTGGCCCTGGGTGGTGTAAGAAAACCAGTTaGGTAAGCCACAGAGATGAAGTCAGCAAGCAGTGT +
Preference number: 3 (lower is better)
Translates to: WPGGPGWCKKTS*VSHRDEVSKQC
Trigger: ACACTGCTTGCTGACTTCATCTCTGTGGCTTACTCAACTGGTTTTCTTACACCACCCAGGGCCACCTGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR GCA 72 bp TGCCCTGTTTTGCTAGCGGGAATTCATTTCCAAAGTTaGTCCCACATGAATGACCCTTGGCGCCAAGCTGCC +
Preference number: 3 (lower is better)
Translates to: CPVLLAGIHFQS*SHMNDPWRQAA
Trigger: GGCAGCTTGGCGCCAAGGGTCATTCATGTGGGAGCAACTTTGGAAATGAATTCCCGCTAGCAAAACAGGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR CCA 72 bp AGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTaGCATTCGCCACTGATTATCTGGGTACAATGTCCG +
Preference number: 3 (lower is better)
Translates to: RDGKHPECRETH*HSPLIIWVQCP
Trigger: CGGACATTGTACCCAGATAATCAGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp CACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACCGCTTAGAATTGGTTTaGGGTGAGTTTGTTTGTCTG +
Preference number: 3 (lower is better)
Translates to: HLPLPLPPEWSAGIKGVYRLELV*GEFVCL
Trigger: CAGACAAACAAACTCACCCAAAACCAATTCTAAGCG...GTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTGGGCTCCTAAATGTGTaGTGTGTGTCTCTAATTCCA +
Preference number: 3 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATGLLNV*CVSLIP
Trigger: TGGAATTAGAGACACACACAACACATTTAGGAGCCC...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATGGGCTCCTAAATGTGTaGTGTGTGTCTCTAATTCCA +
Preference number: 3 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDGLLNV*CVSLIP
Trigger: TGGAATTAGAGACACACACAACACATTTAGGAGCCC...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTACTTGTTTCTTATTGTaGATGATGGGCACGTGTGGA +
Preference number: 3 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATTCFLL*MMGTCG
Trigger: TCCACACGTGCCCATCATCAACAATAAGAAACAAGT...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR CCA 72 bp ATTCATTTCCAAAGTTGCTCCCACATGAATGACCCTTaGCGCCAAGCTGCCTGTTTCTGCGCACCACTTGAT +
Preference number: 3 (lower is better)
Translates to: IHFQSCSHMNDP*RQAACFCAPLD
Trigger: ATCAAGTGGTGCGCAGAAACAGGCAGCTTGGCGCCAAGGGTCATTCATGTGGGAGCAACTTTGGAAATGAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCCGCTTAGAATTGGTTTaGGGTGAGTTTGTTTGTCTG +
Preference number: 3 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISRLELV*GEFVCL
Trigger: CAGACAAACAAACTCACCCAAAACCAATTCTAAGCG...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCACGTAGGTTTTGGGGATaGAACACTGCTGCTCCGGCT +
Preference number: 3 (lower is better)
Translates to: KALIPEKTIYPPLGLPASRRFWG*NTAAPA
Trigger: AGCCGGAGCAGCAGTGTTCAATCCCCAAAACCTACG...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCAACCAGCGCCTTTCACTaGGCCAAAGGTTGCTGTTTT +
Preference number: 3 (lower is better)
Translates to: KALIPEKTIYPPLGLPASTSAFH*AKGCCF
Trigger: AAAACAGCAACCTTTGGCCAAGTGAAAGGCGCTGGT...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGTTAACTTGTTTCTTATaGTTGATGATGGGCACGTGT +
Preference number: 3 (lower is better)
Translates to: GLTATLQLSAKCEKPPEELTCFL*LMMGTC
Trigger: ACACGTGCCCATCATCAACAATAAGAAACAAGTTAA...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp TATTCTAAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCACCCTTCCCCTCTGAGTaGCTCCTGCCCAGTGTTTTA +
Preference number: 3 (lower is better)
Translates to: YSKALIPEKTIYPPLGLPPFPSE*LLPSVL
Trigger: TAAAACACTGGGCAGGAGCAACTCAGAGGGGAAGGG...TGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTTAGAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR TCA 72 bp TACACTGTGCCCTTTATACTAAAGTGCCTCTGGTCATaGGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTA +
Preference number: 3 (lower is better)
Translates to: YTVPFILKCLWS*GGLLNVLCVSL
Trigger: TAGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGTATAAAGGGCACAGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR TCA 72 bp GATCTCAGGTTGTTTTACTTGGAGCATGGTGAAGCGTaGTCCAAAAGGTCTTACAGCAACACTGCAGCTTTC +
Preference number: 3 (lower is better)
Translates to: DLRLFYLEHGEA*SKRSYSNTAAF
Trigger: GAAAGCTGCAGTGTTGCTGTAAGACCTTTTGGATCACGCTTCACCATGCTCCAAGTAAAACAACCTGAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR TCA 72 bp AATCAATACATTTCAGAGCCAAGATTCGCCTCGACCTaGGGCTTCCCAGCTCTGATCTCAGGTTGTTTTACT +
Preference number: 3 (lower is better)
Translates to: NQYISEPRFAST*GFPALISGCFT
Trigger: AGTAAAACAACCTGAGATCAGAGCTGGGAAGCCTCAGGTCGAGGCGAATCTTGGCTCTGAAATGTATTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR CCA 72 bp TGTGCCCTTTATACTAAAGTGCCTCTGGTCATGAGGTaGGCTCCTAAATGTGTTGTGTGTGTCTCTAATTCC +
Preference number: 3 (lower is better)
Translates to: CALYTKVPLVMR*APKCVVCVSNS
Trigger: GGAATTAGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGTATAAAGGGCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR CCA 72 bp CAATGTCCGTCTCTCCAAACACCAAAGTATATAGGTTaGTTCTCTGTCTCGCAGGTGTTTGTGAGGTTGGTT +
Preference number: 3 (lower is better)
Translates to: QCPSLQTPKYIG*FSVSQVFVRLV
Trigger: AACCAACCTCACAAACACCTGCGAGACAGAGAACCAACCTATATACTTTGGTGTTTGGAGAGACGGACATTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR CCA 72 bp TTTAACTTGTTTCTTATTGTTGATGATGGGCACGTGTaGACAGCTCTGTGCAGTCTGCTCTCTCACCTTTAC +
Preference number: 3 (lower is better)
Translates to: FNLFLIVDDGHV*TALCSLLSHLY
Trigger: GTAAAGGTGAGAGAGCAGACTGCACAGAGCTGTCCACACGTGCCCATCATCAACAATAAGAAACAAGTTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR-3UTR CAA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGATTAACTTGTTTCTTATaGTTGATGATGGGCACGTGT +
Preference number: 3 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRLTCFL*LMMGTC
Trigger: ACACGTGCCCATCATCAACAATAAGAAACAAGTTAA...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR TCA 72 bp GTGTGTGTCTCTAATTCCACAATGGTCTCTGTAGTGTaGAAACAAGCCTCTAAATATCTAACCACACCAATC +
Preference number: 3 (lower is better)
Translates to: VCVSNSTMVSVV*KQASKYLTTPI
Trigger: GATTGGTGTGGTTAGATATTTAGAGGCTTGTTTTCACACTACAGAGACCATTGTGGAATTAGAGACACACAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTGTCTGTGTGGAATTCTaGCCCAGCCACCGGGTTCTC +
Preference number: 4 (lower is better)
Translates to: LLPLGSGLASLDHAACARVCVEF*PSHRVL
Trigger: GAGAACCCGGTGGCTGGGGCAGAATTCCACACAGAC...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR TCA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTTGGGCTTCGATACTTTaGTCCCTTCCTCCAGGGCAC +
Preference number: 4 (lower is better)
Translates to: LLPLGSGLASLDHAACARWASIL*SLPPGH
Trigger: GTGCCCTGGAGGAAGGGATCAAAGTATCGAAGCCCA...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCACCGCCCAGCTCGGCTaGCGGAGGCCAGGCGATCCT +
Preference number: 4 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISTAQLG*RRPGDP
Trigger: AGGATCGCCTGGCCTCCGCCAGCCGAGCTGGGCGGT...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTGGCTTCTCTGCTTCATaGCTGGAATCTCCCAGACAG +
Preference number: 4 (lower is better)
Translates to: LLPLGSGLASLDHAACARGFSAS*LESPRQ
Trigger: CTGTCTGGGAGATTCCAGGCATGAAGCAGAGAAGCC...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTCGTCTCTGGCTTCTCTaGTTCATGCCTGGAATCTCC +
Preference number: 4 (lower is better)
Translates to: LLPLGSGLASLDHAACARRLWLL*FMPGIS
Trigger: GGAGATTCCAGGCATGAAGCAGAGAAGCCAGAGACG...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp CACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACCTGGCTGGGCTGCTCTaGTTGGACACTGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: HLPLPLPPEWSAGIKGVYLAGLL*LDTAAW
Trigger: CCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGCCAG...GTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp CACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACGCAGGCCTCGGGACCTaGGGGCACATTCTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: HLPLPLPPEWSAGIKGVYAGLGT*GHILLL
Trigger: CAGAAGGAGAATGTGCCCCCAGGTCCCGAGGCCTGC...GTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTTCTGAGAAGAGGCCTTaGCTTCCATACTTGCCGCCA +
Preference number: 4 (lower is better)
Translates to: LLPLGSGLASLDHAACARSEKRP*LPYLPP
Trigger: TGGCGGCAAGTATGGAAGCCAAGGCCTCTTCTCAGA...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp CACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACGAAACACCTGCTGGTTaGCCAGGAGCCGTTCCATGG +
Preference number: 4 (lower is better)
Translates to: HLPLPLPPEWSAGIKGVYETPAG*PGAVPW
Trigger: CCATGGAACGGCTCCTGGCCAACCAGCAGGTGTTTC...GTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTTGCTGTGCGTGGACATaGTTGTCATCTTCAGCTATG +
Preference number: 4 (lower is better)
Translates to: LLPLGSGLASLDHAACARCCAWT*LSSSAM
Trigger: CATAGCTGAAGATGACAACCATGTCCACGCACAGCA...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTCATATGTTCCTAGACTaGGCTTGTTGTTGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: LLPLGSGLASLDHAACARHMFLD*ACCCSR
Trigger: CCTACTGCAACAACAAGCTCAGTCTAGGAACATATG...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCTCCTCCCTCTCCCTCTaGGAAGAGGCCTTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISSSLSL*EEALAS
Trigger: GGAAGCCAAGGCCTCTTCTCAGAGGGAGAGGGAGGA...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTTCTTCCTTTCCATGTTaGCTTCTTCAGCAGCCTTCT +
Preference number: 4 (lower is better)
Translates to: LLPLGSGLASLDHAACARSSFPC*LLQQPS
Trigger: AGAAGGCTGCTGAAGAAGCCAACATGGAAAGGAAGA...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CCA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTGAAACACCTGCTGGTTaGCCAGGAGCCGTTCCATGG +
Preference number: 4 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATETPAG*PGAVPW
Trigger: CCATGGAACGGCTCCTGGCCAACCAGCAGGTGTTTC...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp CACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACGCTGCTGTTTGGCAGTaGGTCTGTGTGGAATTCTGC +
Preference number: 4 (lower is better)
Translates to: HLPLPLPPEWSAGIKGVYAAVWQ*VCVEFC
Trigger: GCAGAATTCCACACAGACTCACTGCCAAACAGCAGC...GTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR GCA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATTGTAGCTGGCTGGGCTaGTCTGCTTGGACACTGCAG +
Preference number: 4 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDCSWLG*SAWTLQ
Trigger: CTGCAGTGTCCAAGCAGAGCAGCCCAGCCAGCTACA...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp CACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACCACAGATCCTTATGCTaGTTGTGCCCAAAGCCCTCG +
Preference number: 4 (lower is better)
Translates to: HLPLPLPPEWSAGIKGVYHRSLC*LCPKPS
Trigger: CGAGGGCTTTGGGCACAAGCAGCATAAGGATCTGTG...GTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATCTTGGCTTCCATACTTaGCGCCAGCACGCCGACCTT +
Preference number: 4 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDLGFHT*RQHADL
Trigger: AAGGTCGGCGTGCTGGCGGCAAGTATGGAAGCCAAG...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCCTGGGCTGCTCTGCTTaGACACTGCAGCCTGGTACT +
Preference number: 4 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISLGCSA*TLQPGT
Trigger: AGTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAG...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp CACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACATTTGTGTAGCTGGCTaGGCTGCTCTGCTTGGACAC +
Preference number: 4 (lower is better)
Translates to: HLPLPLPPEWSAGIKGVYICVAG*AALLGH
Trigger: GTGTCCAAGCAGAGCAGCCCAGCCAGCTACACAAAT...GTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCCGGAAACAGCTGATGTaGAACACCTGCTGGTTGGCC +
Preference number: 4 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISRKQLM*NTCWLA
Trigger: GGCCAACCAGCAGGTGTTTCACATCAGCTGTTTCCG...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATAGGCCTTGGGGCTCTTaGTGGAAGAGGTTCGAAAGG +
Preference number: 4 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDRPWGS*WKRFER
Trigger: CCTTTCGAACCTCTTCCATCAAGAGCCCCAAGGCCT...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGCTTGGCTTCCATACTTaGCGCCAGCACGCCGACCTT +
Preference number: 4 (lower is better)
Translates to: GLTATLQLSAKCEKPPEELGFHT*RQHADL
Trigger: AAGGTCGGCGTGCTGGCGGCAAGTATGGAAGCCAAG...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTCCCGCATTTCGGCTTTaGGTCCAGAGACTCTTGGTT +
Preference number: 4 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATPAFRL*VQRLLV
Trigger: AACCAAGAGTCTCTGGACCCAAAGCCGAAATGCGGG...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCCTGCAGCCTGGTACTTaGCCATGCGGTCCTTTATGG +
Preference number: 4 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISLQPGT*PCGPLW
Trigger: CCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAG...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATAACTTTCCGGAAGACTaGAGGTCCTGGCGTCAGGAC +
Preference number: 4 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDNFPED*RSWRQD
Trigger: GTCCTGACGCCAGGACCTCCAGTCTTCCGGAAAGTT...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTCGCCGACCTTGGCGATaGGGGCATCTTCTACACCCG +
Preference number: 4 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSRRPWR*GHLLHP
Trigger: CGGGTGTAGAAGATGCCCCCATCGCCAAGGTCGGCG...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTACCGCCCAGCTCGGCTaGCGGAGGCCAGGCGATCCT +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRITAQLG*RRPGDP
Trigger: AGGATCGCCTGGCCTCCGCCAGCCGAGCTGGGCGGT...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTAGCATCGGAAACAGCTaGTGTGAAACACCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATSIGNS*CETPAG
Trigger: ACCAGCAGGTGTTTCACATCAGCTGTTTCCGATGCT...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATGGCTTCTCTGCTTCATaGCTGGAATCTCCCAGACAG +
Preference number: 4 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDGFSAS*LESPRQ
Trigger: CTGTCTGGGAGATTCCAGGCATGAAGCAGAGAAGCC...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTCCTGGTACTTGGCCATaGGGTCCTTTATGGAGGTTT +
Preference number: 4 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATPGTWP*GPLWRF
Trigger: AAACCTCCATAAAGGACCGCATGGCCAAGTACCAGG...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGGCCCACAGATCCTTATaGTGCTTGTGCCCAAAGCCC +
Preference number: 4 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEAHRSL*CLCPKP
Trigger: GGGCTTTGGGCACAAGCAGCATAAGGATCTGTGGGC...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp CACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACATTGTCGCTCTTGCTTaGCCACAGATCCTTATGCTG +
Preference number: 4 (lower is better)
Translates to: HLPLPLPPEWSAGIKGVYIVALA*PQILML
Trigger: CAGCATAAGGATCTGTGGGCAAGCAAGAGCGACAAT...GTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGACCAGCACGCCGACCTTaGCGATGGGGGCATCTTCTA +
Preference number: 4 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRPARRP*RWGHLL
Trigger: TAGAAGATGCCCCCATCGCCAAGGTCGGCGTGCTGG...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCGGGGACTGCTGTGCGTaGACATGGTTGTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISGDCCA*TWLSSS
Trigger: TGAAGATGACAACCATGTCCACGCACAGCAGTCCCC...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp CACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACCATATGTTCCTAGACTaGGCTTGTTGTTGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: HLPLPLPPEWSAGIKGVYHMFLD*ACCCSR
Trigger: CCTACTGCAACAACAAGCTCAGTCTAGGAACATATG...GTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGGTCCCTCTTCTAAAGTaGTGGGGCAGACTTTCAGGG +
Preference number: 4 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEVPLLK*WGRLSG
Trigger: CCCTGAAAGTCTGCCCCAGCACTTTAGAAGAGGGAC...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR GCA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTTGTAGCTGGCTGGGCTaGTCTGCTTGGACACTGCAG +
Preference number: 4 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSCSWLG*SAWTLQ
Trigger: CTGCAGTGTCCAAGCAGAGCAGCCCAGCCAGCTACA...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGCACAGATCCTTATGCTaGTTGTGCCCAAAGCCCTCG +
Preference number: 4 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEHRSLC*LCPKPS
Trigger: CGAGGGCTTTGGGCACAAGCAGCATAAGGATCTGTG...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTATTGTCGCTCTTGCTTaGCCACAGATCCTTATGCTG +
Preference number: 4 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATIVALA*PQILML
Trigger: CAGCATAAGGATCTGTGGGCAAGCAAGAGCGACAAT...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAGGCACTTCCTCGCCCTaGCAGCGTGATTTTCCCACA +
Preference number: 4 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRGTSSP*QRDFPT
Trigger: TGTGGGAAAATCACGCTGGCAGGGCGAGGAAGTGCC...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGTCTGAGAAGAGGCCTTaGCTTCCATACTTGCCGCCA +
Preference number: 4 (lower is better)
Translates to: GLTATLQLSAKCEKPPEESEKRP*LPYLPP
Trigger: TGGCGGCAAGTATGGAAGCCAAGGCCTCTTCTCAGA...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGCGATCCTCAGCTTCTTaGTCTCCGCAGGCTTATCCT +
Preference number: 4 (lower is better)
Translates to: GLTATLQLSAKCEKPPEERSSAS*SPQAYP
Trigger: AGGATAAGCCTGCGGAGACCAAGAAGCTGAGGATCG...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGGCCTTGGGGCTCTTaGTGGAAGAGGTTCGAAAGG +
Preference number: 4 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRRPWGS*WKRFER
Trigger: CCTTTCGAACCTCTTCCATCAAGAGCCCCAAGGCCT...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGATGTGCCCACCCTCACTaGTGCTGTTTGGCAGTGAGT +
Preference number: 4 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRCAHPH*CCLAVS
Trigger: ACTCACTGCCAAACAGCAGCAGTGAGGGTGGGCACA...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR GCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAGCTCTGCTTGGACACTaGAGCCTGGTACTTGGCCAT +
Preference number: 4 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRALLGH*SLVLGH
Trigger: ATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGC...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTCTGGCTGGGCTGCTCTaGTTGGACACTGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRILAGLL*LDTAAW
Trigger: CCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGCCAG...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTGCCCACAGATCCTTATaGTGCTTGTGCCCAAAGCCC +
Preference number: 4 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSAHRSL*CLCPKP
Trigger: GGGCTTTGGGCACAAGCAGCATAAGGATCTGTGGGC...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATCCTCTTCTAAAGTGCTaGGGCAGACTTTCAGGGTTA +
Preference number: 4 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDPLLKC*GRLSGL
Trigger: TAACCCTGAAAGTCTGCCCCAGCACTTTAGAAGAGG...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CCA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTTCTCTGCTTCATGCCTaGAATCTCCCAGACAGTTTT +
Preference number: 4 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATSLLHA*NLPDSF
Trigger: AAAACTGTCTGGGAGATTCCAGGCATGAAGCAGAGA...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGGTTTTCGCTCGTCTCTaGCTTCTCTGCTTCATGCCT +
Preference number: 4 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEVFARL*LLCFMP
Trigger: AGGCATGAAGCAGAGAAGCCAGAGACGAGCGAAAAC...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTGCAGGCCTCGGGACCTaGGGGCACATTCTCCTTCTG +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRIAGLGT*GHILLL
Trigger: CAGAAGGAGAATGTGCCCCCAGGTCCCGAGGCCTGC...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTAACTTTCCGGAAGACTaGAGGTCCTGGCGTCAGGAC +
Preference number: 4 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSNFPED*RSWRQD
Trigger: GTCCTGACGCCAGGACCTCCAGTCTTCCGGAAAGTT...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTCGCCGACCTTGGCGATaGGGGCATCTTCTACACCCG +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRIRRPWR*GHLLHP
Trigger: CGGGTGTAGAAGATGCCCCCATCGCCAAGGTCGGCG...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATTGCTGTGCGTGGACATaGTTGTCATCTTCAGCTATG +
Preference number: 4 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDCCAWT*LSSSAM
Trigger: CATAGCTGAAGATGACAACCATGTCCACGCACAGCA...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTCTTCCCGGTCAGCTCTaGCTCCAGGAGCAGGCTTGT +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRILPGQL*LQEQAC
Trigger: ACAAGCCTGCTCCTGGAGTCAGAGCTGACCGGGAAG...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR TCA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTCGTTTTTCTCCGAGTTaGATGCAGAGGAAGACAAAT +
Preference number: 4 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATRFSPS*MQRKTN
Trigger: ATTTGTCTTCCTCTGCATTCAACTCGGAGAAAAACG...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTTCCTCCCTCTCCCTCTaGGAAGAGGCCTTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRISSLSL*EEALAS
Trigger: GGAAGCCAAGGCCTCTTCTCAGAGGGAGAGGGAGGA...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTCGTCTCTGGCTTCTCTaGTTCATGCCTGGAATCTCC +
Preference number: 4 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSRLWLL*FMPGIS
Trigger: GGAGATTCCAGGCATGAAGCAGAGAAGCCAGAGACG...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGGACAGGGAAGTCCACTaGCGTCTATTAAATGGAGTC +
Preference number: 4 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEDREVH*RLLNGV
Trigger: GACTCCATTTAATAGACGCCAGTGGACTTCCCTGTC...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CCA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCTCTCTGCTTCATGCCTaGAATCTCCCAGACAGTTTT +
Preference number: 4 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISSLLHA*NLPDSF
Trigger: AAAACTGTCTGGGAGATTCCAGGCATGAAGCAGAGA...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTCAGAGACTCTTGGTTTaGTTGTGTTCACCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATQRLLV*LCSPFS
Trigger: TGAGAAAGGTGAACACAACCAAACCAAGAGTCTCTG...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGACCCGCATTTCGGCTTTaGGTCCAGAGACTCTTGGTT +
Preference number: 4 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRPAFRL*VQRLLV
Trigger: AACCAAGAGTCTCTGGACCCAAAGCCGAAATGCGGG...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTCCATGCGGTCCTTTATaGAGGTTTCTGAGAGGCGTG +
Preference number: 4 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSPCGPL*RFLRGV
Trigger: CACGCCTCTCAGAAACCTCCATAAAGGACCGCATGG...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTCCTGCATTAGGCGGCTaGGCTGGTCTCCCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRIPALGG*AGLPKV
Trigger: GACTTTGGGGAGACCAGCCCAGCCGCCTAATGCAGG...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTCCAGCACGCCGACCTTaGCGATGGGGGCATCTTCTA +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRIPARRP*RWGHLL
Trigger: TAGAAGATGCCCCCATCGCCAAGGTCGGCGTGCTGG...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTGGGGACTGCTGTGCGTaGACATGGTTGTCATCTTCA +
Preference number: 4 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSGDCCA*TWLSSS
Trigger: TGAAGATGACAACCATGTCCACGCACAGCAGTCCCC...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCATGGGCTTCGATACTTTaGTCCCTTCCTCCAGGGCAC +
Preference number: 4 (lower is better)
Translates to: KALIPEKTIYPPLGLPASWASIL*SLPPGH
Trigger: GTGCCCTGGAGGAAGGGATCAAAGTATCGAAGCCCA...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTCCTGGTACTTGGCCATaGGGTCCTTTATGGAGGTTT +
Preference number: 4 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSPGTWP*GPLWRF
Trigger: AAACCTCCATAAAGGACCGCATGGCCAAGTACCAGG...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCTCTTCAGCAGCCTTCTaGTACTTGGAGAATATTTCC +
Preference number: 4 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISSSAAF*YLENIS
Trigger: GGAAATATTCTCCAAGTACCAGAAGGCTGCTGAAGA...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR TCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTCGGAAACAGCTGATGTaGAACACCTGCTGGTTGGCC +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRIRKQLM*NTCWLA
Trigger: GGCCAACCAGCAGGTGTTTCACATCAGCTGTTTCCG...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTCCCATTTATGAGTTTTaGTTTCACTGGTTTTCAGCT +
Preference number: 4 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATPIYEF*FHWFSA
Trigger: AGCTGAAAACCAGTGAAAGCAAAACTCATAAATGGG...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp CACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACCTTCAGTCTATTCAGTaGAACGTTGTATTTCTCTAT +
Preference number: 4 (lower is better)
Translates to: HLPLPLPPEWSAGIKGVYLQSIQ*NVVFLY
Trigger: ATAGAGAAATACAACGTTCCACTGAATAGACTGAAG...GTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCACCATGCGGTCCTTTATaGAGGTTTCTGAGAGGCGTG +
Preference number: 4 (lower is better)
Translates to: KALIPEKTIYPPLGLPASPCGPL*RFLRGV
Trigger: CACGCCTCTCAGAAACCTCCATAAAGGACCGCATGG...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp TATTCTAAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCACCTGCATTAGGCGGCTaGGCTGGTCTCCCCAAAGTC +
Preference number: 4 (lower is better)
Translates to: YSKALIPEKTIYPPLGLPPALGG*AGLPKV
Trigger: GACTTTGGGGAGACCAGCCCAGCCGCCTAATGCAGG...TGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTTAGAATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCACATCTTGGGATTTTTaGTTCTGGGTAGTGAATTCT +
Preference number: 4 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISTSWDF*FWVVNS
Trigger: AGAATTCACTACCCAGAATCAAAAATCCCAAGATGT...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGCAAGAGAAAGCTCTTTaGCTGTTACTCTCAATGACA +
Preference number: 4 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEQEKAL*LLLSMT
Trigger: TGTCATTGAGAGTAACAGCCAAAGAGCTTTCTCTTG...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CCA 90 bp TATTCTAAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCACTGGGCTGCTCTGCTTaGACACTGCAGCCTGGTACT +
Preference number: 4 (lower is better)
Translates to: YSKALIPEKTIYPPLGLPLGCSA*TLQPGT
Trigger: AGTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAG...TGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTTAGAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTATTTGTGTAGCTGGCTaGGCTGCTCTGCTTGGACAC +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRIICVAG*AALLGH
Trigger: GTGTCCAAGCAGAGCAGCCCAGCCAGCTACACAAAT...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCGAGTTTTGCTTTCACTaGTTTTCAGCTCATTTGTGT +
Preference number: 4 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISEFCFH*FSAHLC
Trigger: ACACAAATGAGCTGAAAACCAGTGAAAGCAAAACTC...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTCGATCCTCAGCTTCTTaGTCTCCGCAGGCTTATCCT +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRIRSSAS*SPQAYP
Trigger: AGGATAAGCCTGCGGAGACCAAGAAGCTGAGGATCG...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp GGTGTTTTGACAATGCGCTTAGAATTGGTTTTGGGTGAGTTTGTTTGTCTGTTTGGCTGTTACTCTCAATaGCAGGGAAGTCCACTGGCG +
Preference number: 4 (lower is better)
Translates to: GVLTMRLELVLGEFVCLFGCYSQ*QGSPLA
Trigger: CGCCAGTGGACTTCCCTGTCATTGAGAGTAACAGCC...AAACAGACAAACAAACTCACCCAAAACCAATTCTAAGCGCATTGTCAAAACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR TCA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTCGTTTTTCTCCGAGTTaGATGCAGAGGAAGACAAAT +
Preference number: 4 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSRFSPS*MQRKTN
Trigger: ATTTGTCTTCCTCTGCATTCAACTCGGAGAAAAACG...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp TATTCTAAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCACTTTATGGAGGTTTCTaGGAGGCGTGGCAGCTCCAG +
Preference number: 4 (lower is better)
Translates to: YSKALIPEKTIYPPLGLPLYGGF*EAWQLQ
Trigger: CTGGAGCTGCCACGCCTCTCAGAAACCTCCATAAAG...TGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTTAGAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp GGTGTTTTGACAATGCGCTTAGAATTGGTTTTGGGTGAGTTTGTTTGTCTGTTTCTTTATGGAGGTTTCTaGGAGGCGTGGCAGCTCCAG +
Preference number: 4 (lower is better)
Translates to: GVLTMRLELVLGEFVCLFLYGGF*EAWQLQ
Trigger: CTGGAGCTGCCACGCCTCTCAGAAACCTCCATAAAG...AAACAGACAAACAAACTCACCCAAAACCAATTCTAAGCGCATTGTCAAAACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGTTCTGTTCCCATTTATaGGTTTTGCTTTCACTGGTT +
Preference number: 4 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEFCSHL*VLLSLV
Trigger: AACCAGTGAAAGCAAAACTCATAAATGGGAACAGAA...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGATTTCTCCGAGTTGAATaGAGAGGAAGACAAATGACC +
Preference number: 4 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRFLRVE*RGRQMT
Trigger: GGTCATTTGTCTTCCTCTGCATTCAACTCGGAGAAA...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp TATTCTAAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCTCTGCTTGGACACTaGAGCCTGGTACTTGGCCAT +
Preference number: 4 (lower is better)
Translates to: YSKALIPEKTIYPPLGLPALLGH*SLVLGH
Trigger: ATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGC...TGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTTAGAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCATGGGCTTTAAAATCGTaGCTGTTCTCTGAGCGAGGA +
Preference number: 4 (lower is better)
Translates to: KALIPEKTIYPPLGLPASWALKS*LFSERG
Trigger: TCCTCGCTCAGAGAACAGCCACGATTTTAAAGCCCA...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTGTTTTCGCTCGTCTCTaGCTTCTCTGCTTCATGCCT +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRIVFARL*LLCFMP
Trigger: AGGCATGAAGCAGAGAAGCCAGAGACGAGCGAAAAC...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp TATTCTAAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCACTGCAGCCTGGTACTTaGCCATGCGGTCCTTTATGG +
Preference number: 4 (lower is better)
Translates to: YSKALIPEKTIYPPLGLPLQPGT*PCGPLW
Trigger: CCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAG...TGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTTAGAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAACTTCTTCGCTGTTTTaGAAGGAGAACTTTCCGGAA +
Preference number: 4 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRTSSLF*KENFPE
Trigger: TTCCGGAAAGTTCTCCTTCCAAAACAGCGAAGAAGT...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR CAA 72 bp GGCTTCAGTAACCAGCGCCTTTCACTTGGCCAAAGGTaGCTGTTTTGTGCCTCAGTGATTAAAAATACAGGA +
Preference number: 4 (lower is better)
Translates to: GFSNQRLSLGQR*LFCASVIKNTG
Trigger: TCCTGTATTTTTAATCACTGAGGCACAAAACAGCAACCTTTGGCCAAGTGAAAGGCGCTGGTTACTGAAGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
3UTR CAA 72 bp GCCACTACCTTAAGCCCACCCCGCCATACACATCATTaGGAATATCAGTTACATACAAGAACTGCACTCGTT +
Preference number: 4 (lower is better)
Translates to: ATTLSPPRHTHH*EYQLHTRTALV
Trigger: AACGAGTGCAGTTCTTGTATGTAACTGATATTCCAAATGATGTGTATGGCGGGGTGGGCTTAAGGTAGTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTCCTCATTGTCGCTCTTaGTTGCCCACAGATCCTTAT +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRIPHCRS*LPTDPY
Trigger: ATAAGGATCTGTGGGCAAGCAAGAGCGACAATGAGG...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGATTTCTCTATTTTGCCTaGAGTTTCTGTGTTTTCGCT +
Preference number: 4 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRFLYFA*SFCVFA
Trigger: AGCGAAAACACAGAAACTTCAGGCAAAATAGAGAAA...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp AAAAGGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGATTCTGTTCCCATTTATaGGTTTTGCTTTCACTGGTT +
Preference number: 4 (lower is better)
Translates to: KRSYSNTAAFRKVRETTRFCSHL*VLLSLV
Trigger: AACCAGTGAAAGCAAAACTCATAAATGGGAACAGAA...TCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp TATTCTAAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAAGCATCGGAAACAGCTaGTGTGAAACACCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: YSKALIPEKTIYPPLGLPSIGNS*CETPAG
Trigger: ACCAGCAGGTGTTTCACATCAGCTGTTTCCGATGCT...TGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTTAGAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTTTTCTCCGAGTTGAATaGAGAGGAAGACAAATGACC +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRIFLRVE*RGRQMT
Trigger: GGTCATTTGTCTTCCTCTGCATTCAACTCGGAGAAA...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR GCA 90 bp TATTCTAAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCACCTCATTGTCGCTCTTaGTTGCCCACAGATCCTTAT +
Preference number: 4 (lower is better)
Translates to: YSKALIPEKTIYPPLGLPPHCRS*LPTDPY
Trigger: ATAAGGATCTGTGGGCAAGCAAGAGCGACAATGAGG...TGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTTAGAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCACAGCCTTCTGGTACTTaGAGAATATTTCCACAATTG +
Preference number: 4 (lower is better)
Translates to: KALIPEKTIYPPLGLPASQPSGT*RIFPQL
Trigger: CAATTGTGGAAATATTCTCCAAGTACCAGAAGGCTG...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CCA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCAGAGTTTTGCTTTCACTaGTTTTCAGCTCATTTGTGT +
Preference number: 4 (lower is better)
Translates to: KALIPEKTIYPPLGLPASEFCFH*FSAHLC
Trigger: ACACAAATGAGCTGAAAACCAGTGAAAGCAAAACTC...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp GGTGTTTTGACAATGCGCTTAGAATTGGTTTTGGGTGAGTTTGTTTGTCTGTTTTTCCACAATTGCGGATaGCTTGTTCTTGTTGACAAG +
Preference number: 4 (lower is better)
Translates to: GVLTMRLELVLGEFVCLFFHNCG*LVLVDK
Trigger: CTTGTCAACAAGAACAAGTCATCCGCAATTGTGGAA...AAACAGACAAACAAACTCACCCAAAACCAATTCTAAGCGCATTGTCAAAACACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CCA 90 bp GGTGTTTTGACAATGCGCTTAGAATTGGTTTTGGGTGAGTTTGTTTGTCTGTTTCAGAGACTCTTGGTTTaGTTGTGTTCACCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: GVLTMRLELVLGEFVCLFQRLLV*LCSPFS
Trigger: TGAGAAAGGTGAACACAACCAAACCAAGAGTCTCTG...AAACAGACAAACAAACTCACCCAAAACCAATTCTAAGCGCATTGTCAAAACACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp GGTGTTTTGACAATGCGCTTAGAATTGGTTTTGGGTGAGTTTGTTTGTCTGTTTACTTCTTCGCTGTTTTaGAAGGAGAACTTTCCGGAA +
Preference number: 4 (lower is better)
Translates to: GVLTMRLELVLGEFVCLFTSSLF*KENFPE
Trigger: TTCCGGAAAGTTCTCCTTCCAAAACAGCGAAGAAGT...AAACAGACAAACAAACTCACCCAAAACCAATTCTAAGCGCATTGTCAAAACACC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CCA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTCTTCAGTCTATTCAGTaGAACGTTGTATTTCTCTAT +
Preference number: 4 (lower is better)
Translates to: TTTPGLKDHWCFDNALRILQSIQ*NVVFLY
Trigger: ATAGAGAAATACAACGTTCCACTGAATAGACTGAAG...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR TCA 90 bp GGTGTTTTGACAATGCGCTTAGAATTGGTTTTGGGTGAGTTTGTTTGTCTGTTTACATCTTGGGATTTTTaGTTCTGGGTAGTGAATTCT +
Preference number: 4 (lower is better)
Translates to: GVLTMRLELVLGEFVCLFTSWDF*FWVVNS
Trigger: AGAATTCACTACCCAGAATCAAAAATCCCAAGATGT...AAACAGACAAACAAACTCACCCAAAACCAATTCTAAGCGCATTGTCAAAACACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 90 bp GAGAAGAGGCCTTGGCTTCCATACTTGCCGCCAGCACGCCGACCTTaGCGATGGGGGCATCTTCTACACCCGGGCTATGGGGGCTCTCCC +
Preference number: 5 (lower is better)
Translates to: EKRPWLPYLPPARRP*RWGHLLHPGYGGSP
Trigger: GGGAGAGCCCCCATAGCCCGGGTGTAGAAGATGCCCCCATCGCCAAGGTCGGCGTGCTGGCGGCAAGTATGGAAGCCAAGGCCTCTTCTC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 90 bp TTTGATCCCTTCCTCCAGGGCACTTCCGGAACCGCCCAGCTCGGCTaGCGGAGGCCAGGCGATCCTCAGCTTCTTGGTCTCCGCAGGCTT +
Preference number: 5 (lower is better)
Translates to: FDPFLQGTSGTAQLG*RRPGDPQLLGLRRL
Trigger: AAGCCTGCGGAGACCAAGAAGCTGAGGATCGCCTGGCCTCCGCCAGCCGAGCTGGGCGGTTCCGGAAGTGCCCTGGAGGAAGGGATCAAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS GCA 90 bp TCCGGAAGACTGGAGGTCCTGGCGTCAGGACTCAGCGGCTTAGGGTaGATAGGCTGCTGGGCCTCGCTCTTCACCTGGGAGTTACAGGTG +
Preference number: 5 (lower is better)
Translates to: SGRLEVLASGLSGLG*IGCWASLFTWELQV
Trigger: CACCTGTAACTCCCAGGTGAAGAGCGAGGCCCAGCAGCCTATGCACCCTAAGCCGCTGAGTCCTGACGCCAGGACCTCCAGTCTTCCGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS TCA 90 bp TCTTGCAGACGTCATCCTCCGGAGGCCACTTGGGCTTCGATACTTTaGTCCCTTCCTCCAGGGCACTTCCGGAACCGCCCAGCTCGGCTG +
Preference number: 5 (lower is better)
Translates to: SCRRHPPEATWASIL*SLPPGHFRNRPARL
Trigger: CAGCCGAGCTGGGCGGTTCCGGAAGTGCCCTGGAGGAAGGGATCAAAGTATCGAAGCCCAAGTGGCCTCCGGAGGATGACGTCTGCAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS GCA 90 bp TCACTTCAGCAGGAGGGTAGTCCGCTGTGTGCCCACCCTCACTGCTaGTGTTTGGCAGTGAGTCTGTGTGGAATTCTGCCCCAGCCACCG +
Preference number: 5 (lower is better)
Translates to: SLQQEGSPLCAHPHC*CLAVSLCGILPQPP
Trigger: CGGTGGCTGGGGCAGAATTCCACACAGACTCACTGCCAAACAGCAGCAGTGAGGGTGGGCACACAGCGGACTACCCTCCTGCTGAAGTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS GCA 90 bp CCGTCACTTCAGCAGGAGGGTAGTCCGCTGTGTGCCCACCCTCACTaGTGCTGTTTGGCAGTGAGTCTGTGTGGAATTCTGCCCCAGCCA +
Preference number: 5 (lower is better)
Translates to: PSLQQEGSPLCAHPH*CCLAVSLCGILPQP
Trigger: TGGCTGGGGCAGAATTCCACACAGACTCACTGCCAAACAGCAGCAGTGAGGGTGGGCACACAGCGGACTACCCTCCTGCTGAAGTGACGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS GCA 90 bp TGGCTGGGCTGCTCTGCTTGGACACTGCAGCCTGGTACTTGGCCATaGGGTCCTTTATGGAGGTTTCTGAGAGGCGTGGCAGCTCCAGAT +
Preference number: 5 (lower is better)
Translates to: WLGCSAWTLQPGTWP*GPLWRFLRGVAAPD
Trigger: ATCTGGAGCTGCCACGCCTCTCAGAAACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp CTCTTGCCTCTGGGTTCTGGCCTCGCTTCCCTTGACCATGCTGCGTGCGCGCGTCCAGAACCCGACATCTaGGGATTTTTGATTCTGGGT +
Preference number: 5 (lower is better)
Translates to: LLPLGSGLASLDHAACARPEPDI*GFLILG
Trigger: ACCCAGAATCAAAAATCCCAAGATGTCGGGTTCTGG...ACGCGCGCACGCAGCATGGTCAAGGGAAGCGAGGCCAGAACCCAGAGGCAAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 90 bp GCTGTGTGCCCACCCTCACTGCTGCTGTTTGGCAGTGAGTCTGTGTaGAATTCTGCCCCAGCCACCGGGTTCTCCCACTTCTTCTTTAAC +
Preference number: 5 (lower is better)
Translates to: AVCPPSLLLFGSESV*NSAPATGFSHFFFN
Trigger: GTTAAAGAAGAAGTGGGAGAACCCGGTGGCTGGGGCAGAATTCCACACAGACTCACTGCCAAACAGCAGCAGTGAGGGTGGGCACACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS-3UTR CAA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGGCTGGGCTGCTCTGCTaGGACACTGCAGCCTGGTAC +
Preference number: 5 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEAGLLC*DTAAWY
Trigger: GTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGC...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCCCACGCAGCTCTCCTTaGCCGGCGCCTGAAACTTCT +
Preference number: 5 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISPRSSP*PAPETS
Trigger: AGAAGTTTCAGGCGCCGGCAAAGGAGAGCTGCGTGG...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGCCTTGGCTTCCATACTaGCCGCCAGCACGCCGACCT +
Preference number: 5 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEPWLPY*PPARRP
Trigger: AGGTCGGCGTGCTGGCGGCAAGTATGGAAGCCAAGG...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp CACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACGAGGCCTTGGGGCTCTaGATGGAAGAGGTTCGAAAG +
Preference number: 5 (lower is better)
Translates to: HLPLPLPPEWSAGIKGVYEALGL*MEEVRK
Trigger: CTTTCGAACCTCTTCCATCAAGAGCCCCAAGGCCTC...GTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS GCA 90 bp TGTTTCCTTTCCATCGTCGCTATCCCTCCTCCAAACTCCTCACTCTaGTCGGACTCGCTCCAACCTTTCCTGAGAGATGGCGAAGAGGCC +
Preference number: 5 (lower is better)
Translates to: CFLSIVAIPPPNSSL*SDSLQPFLRDGEEA
Trigger: GGCCTCTTCGCCATCTCTCAGGAAAGGTTGGAGCGAGTCCGAGCAGAGTGAGGAGTTTGGAGGAGGGATAGCGACGATGGAAAGGAAACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 90 bp CACTGGTTTTCAGCTCATTTGTGTAGCTGGCTGGGCTGCTCTGCTTaGACACTGCAGCCTGGTACTTGGCCATGCGGTCCTTTATGGAGG +
Preference number: 5 (lower is better)
Translates to: HWFSAHLCSWLGCSA*TLQPGTWPCGPLWR
Trigger: CCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGCCAGCTACACAAATGAGCTGAAAACCAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTCCTCACTGCTGCTGTTaGGCAGTGAGTCTGTGTGGA +
Preference number: 5 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATPHCCC*AVSLCG
Trigger: TCCACACAGACTCACTGCCAAACAGCAGCAGTGAGG...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CAA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGCCACGCAGCTCTCCTTaGCCGGCGCCTGAAACTTCT +
Preference number: 5 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEPRSSP*PAPETS
Trigger: AGAAGTTTCAGGCGCCGGCAAAGGAGAGCTGCGTGG...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 90 bp TCTGCTTGGACACTGCAGCCTGGTACTTGGCCATGCGGTCCTTTATaGAGGTTTCTGAGAGGCGTGGCAGCTCCAGATTCCTCTTACTCT +
Preference number: 5 (lower is better)
Translates to: SAWTLQPGTWPCGPL*RFLRGVAAPDSSYS
Trigger: AGAGTAAGAGGAATCTGGAGCTGCCACGCCTCTCAGAAACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 90 bp AAACTCCTCACTCTGCTCGGACTCGCTCCAACCTTTCCTGAGAGATaGCGAAGAGGCCTTGGGGCTCTTGATGGAAGAGGTTCGAAAGGA +
Preference number: 5 (lower is better)
Translates to: KLLTLLGLAPTFPER*RRGLGALDGRGSKG
Trigger: TCCTTTCGAACCTCTTCCATCAAGAGCCCCAAGGCCTCTTCGCCATCTCTCAGGAAAGGTTGGAGCGAGTCCGAGCAGAGTGAGGAGTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATCCCAAAGTCTCCTCATaGTCGCTCTTGCTTGCCCAC +
Preference number: 5 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDPKVSS*SLLLAH
Trigger: GTGGGCAAGCAAGAGCGACAATGAGGAGACTTTGGG...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGGATGGCGAAGAGGCCTaGGGGCTCTTGATGGAAGAG +
Preference number: 5 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEDGEEA*GLLMEE
Trigger: CTCTTCCATCAAGAGCCCCAAGGCCTCTTCGCCATC...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS TCA 90 bp CACTGCAGCCTGGTACTTGGCCATGCGGTCCTTTATGGAGGTTTCTaGGAGGCGTGGCAGCTCCAGATTCCTCTTACTCTCGTTTTTCTC +
Preference number: 5 (lower is better)
Translates to: HCSLVLGHAVLYGGF*EAWQLQIPLTLVFL
Trigger: GAGAAAAACGAGAGTAAGAGGAATCTGGAGCTGCCACGCCTCTCAGAAACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS GCA 90 bp TTTTGCTTTCACTGGTTTTCAGCTCATTTGTGTAGCTGGCTGGGCTaGTCTGCTTGGACACTGCAGCCTGGTACTTGGCCATGCGGTCCT +
Preference number: 5 (lower is better)
Translates to: FCFHWFSAHLCSWLG*SAWTLQPGTWPCGP
Trigger: AGGACCGCATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGCCAGCTACACAAATGAGCTGAAAACCAGTGAAAGCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCTTGGGCTTCGATACTTaGATCCCTTCCTCCAGGGCA +
Preference number: 5 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISLGFDT*IPSSRA
Trigger: TGCCCTGGAGGAAGGGATCAAAGTATCGAAGCCCAA...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGGAGGCCTTGGGGCTCTaGATGGAAGAGGTTCGAAAG +
Preference number: 5 (lower is better)
Translates to: GLTATLQLSAKCEKPPEEEALGL*MEEVRK
Trigger: CTTTCGAACCTCTTCCATCAAGAGCCCCAAGGCCTC...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp CACCTGCCTCTGCCTCTGCCTCCCGAGTGGAGTGCTGGGATTAAAGGTGTTTACTCTGGCATTTTCCGTTaGTTTCCTTTCCATCGTCGC +
Preference number: 5 (lower is better)
Translates to: HLPLPLPPEWSAGIKGVYSGIFR*FPFHRR
Trigger: GCGACGATGGAAAGGAAACAAACGGAAAATGCCAGA...GTAAACACCTTTAATCCCAGCACTCCACTCGGGAGGCAGAGGCAGAGGCAGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 90 bp ATGAGTTTTGCTTTCACTGGTTTTCAGCTCATTTGTGTAGCTGGCTaGGCTGCTCTGCTTGGACACTGCAGCCTGGTACTTGGCCATGCG +
Preference number: 5 (lower is better)
Translates to: MSFAFTGFQLICVAG*AALLGHCSLVLGHA
Trigger: CGCATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGCCAGCTACACAAATGAGCTGAAAACCAGTGAAAGCAAAACTCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTACTCCAGGAGCAGGCTaGTCCGTCACTTCAGCAGGA +
Preference number: 5 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSTPGAG*SVTSAG
Trigger: TCCTGCTGAAGTGACGGACAAGCCTGCTCCTGGAGT...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CAA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCACCTTGGCTTCCATACTaGCCGCCAGCACGCCGACCT +
Preference number: 5 (lower is better)
Translates to: KALIPEKTIYPPLGLPASPWLPY*PPARRP
Trigger: AGGTCGGCGTGCTGGCGGCAAGTATGGAAGCCAAGG...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS TCA 90 bp GGCGTGGCAGCTCCAGATTCCTCTTACTCTCGTTTTTCTCCGAGTTaGATGCAGAGGAAGACAAATGACCCGCACCTATTTCCCAGTCAT +
Preference number: 5 (lower is better)
Translates to: GVAAPDSSYSRFSPS*MQRKTNDPHLFPSH
Trigger: ATGACTGGGAAATAGGTGCGGGTCATTTGTCTTCCTCTGCATTCAACTCGGAGAAAAACGAGAGTAAGAGGAATCTGGAGCTGCCACGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp TCACACAGAGTCACCTGGATGTGGGACTCAGCTGATGAACCGCCTCTAACCGATAACTTCTTCGCTGTTTaGGAAGGAGAACTTTCCGGA +
Preference number: 5 (lower is better)
Translates to: SHRVTWMWDSADEPPLTDNFFAV*EGELSG
Trigger: TCCGGAAAGTTCTCCTTCCAAAACAGCGAAGAAGTT...ATCGGTTAGAGGCGGTTCATCAGCTGAGTCCCACATCCAGGTGACTCTGTGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp GTAAGCCACAGAGATGAAGTCAGCAAGCAGTGTTCCCACACGGTCTGCATCAGCAACTTCTTCGCTGTTTaGGAAGGAGAACTTTCCGGA +
Preference number: 5 (lower is better)
Translates to: VSHRDEVSKQCSHTVCISNFFAV*EGELSG
Trigger: TCCGGAAAGTTCTCCTTCCAAAACAGCGAAGAAGTT...GCTGATGCAGACCGTGTGGGAACACTGCTTGCTGACTTCATCTCTGTGGCTTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCAGATGGCGAAGAGGCCTaGGGGCTCTTGATGGAAGAG +
Preference number: 5 (lower is better)
Translates to: KALIPEKTIYPPLGLPASDGEEA*GLLMEE
Trigger: CTCTTCCATCAAGAGCCCCAAGGCCTCTTCGCCATC...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS TCA 90 bp TCTCGGACCACTTCTCCCTCCCAGAACCCGACATCTTGGGATTTTTaGTTCTGGGTAGTGAATTCTTTAGCAGCCGTGGTGTCTACAAAG +
Preference number: 5 (lower is better)
Translates to: SRTTSPSQNPTSWDF*FWVVNSLAAVVSTK
Trigger: CTTTGTAGACACCACGGCTGCTAAAGAATTCACTACCCAGAATCAAAAATCCCAAGATGTCGGGTTCTGGGAGGGAGAAGTGGTCCGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS GCA 90 bp TGGCAGCTCCAGATTCCTCTTACTCTCGTTTTTCTCCGAGTTGAATaGAGAGGAAGACAAATGACCCGCACCTATTTCCCAGTCATCCAG +
Preference number: 5 (lower is better)
Translates to: WQLQIPLTLVFLRVE*RGRQMTRTYFPVIQ
Trigger: CTGGATGACTGGGAAATAGGTGCGGGTCATTTGTCTTCCTCTGCATTCAACTCGGAGAAAAACGAGAGTAAGAGGAATCTGGAGCTGCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp GGTGTTTTGACAATGCGCTTAGAATTGGTTTTGGGTGAGTTTGTTTGTCTGTTTGCTGGGCTGCTCTGCTaGGACACTGCAGCCTGGTAC +
Preference number: 5 (lower is better)
Translates to: GVLTMRLELVLGEFVCLFAGLLC*DTAAWY
Trigger: GTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGC...AAACAGACAAACAAACTCACCCAAAACCAATTCTAAGCGCATTGTCAAAACACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp CAGAAGAGATGGCAAACACCCAGAGTGCAGGGAGACACACTGGCATTCGCCACTTTTGGACTTGAAGAGTaGATTGAAGTGAGGCTTACA +
Preference number: 5 (lower is better)
Translates to: QKRWQTPRVQGDTLAFATFGLEE*IEVRLT
Trigger: TGTAAGCCTCACTTCAATCAACTCTTCAAGTCCAAA...AGTGGCGAATGCCAGTGTGTCTCCCTGCACTCTGGGTGTTTGCCATCTCTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTTTCTTCCTTTCCATGTaGGCTTCTTCAGCAGCCTTC +
Preference number: 5 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSFFLSM*ASSAAF
Trigger: GAAGGCTGCTGAAGAAGCCAACATGGAAAGGAAGAA...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CAA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTCCCAAAGTCTCCTCATaGTCGCTCTTGCTTGCCCAC +
Preference number: 5 (lower is better)
Translates to: TTTPGLKDHWCFDNALRIPKVSS*SLLLAH
Trigger: GTGGGCAAGCAAGAGCGACAATGAGGAGACTTTGGG...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp ACTAAAGTGCCTCTGGTCATGAGGTGGGCTCCTAAATGTGTTGTGTGTGTCTCTACAAGAGAAAGCTCTTaGGCTGTTACTCTCAATGAC +
Preference number: 5 (lower is better)
Translates to: TKVPLVMRWAPKCVVCVSTRESS*AVTLND
Trigger: GTCATTGAGAGTAACAGCCAAAGAGCTTTCTCTTGT...AGAGACACACACAACACATTTAGGAGCCCACCTCATGACCAGAGGCACTTTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CAA 90 bp GGTCTTACAGCAACACTGCAGCTTTCCGCAAAGTGCGAGAAACCACCAGAAGAGAGAATATTTCCACAATaGCGGATGACTTGTTCTTGT +
Preference number: 5 (lower is better)
Translates to: GLTATLQLSAKCEKPPEERIFPQ*RMTCSC
Trigger: ACAAGAACAAGTCATCCGCAATTGTGGAAATATTCT...CTCTTCTGGTGGTTTCTCGCACTTTGCGGAAAGCTGCAGTGTTGCTGTAAGACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CAA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCATCTGGCATTTTCCGTTaGTTTCCTTTCCATCGTCGC +
Preference number: 5 (lower is better)
Translates to: KALIPEKTIYPPLGLPASSGIFR*FPFHRR
Trigger: GCGACGATGGAAAGGAAACAAACGGAAAATGCCAGA...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCACCAGAACCCGACATCTaGGGATTTTTGATTCTGGGT +
Preference number: 5 (lower is better)
Translates to: KALIPEKTIYPPLGLPASPEPDI*GFLILG
Trigger: ACCCAGAATCAAAAATCCCAAGATGTCGGGTTCTGG...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp GGTGTTTTGACAATGCGCTTAGAATTGGTTTTGGGTGAGTTTGTTTGTCTGTTTGATCCAAATCTAGGTTaGGGCTGGGTGTGCTCTTCC +
Preference number: 5 (lower is better)
Translates to: GVLTMRLELVLGEFVCLFDPNLG*GWVCSS
Trigger: GGAAGAGCACACCCAGCCCAAACCTAGATTTGGATC...AAACAGACAAACAAACTCACCCAAAACCAATTCTAAGCGCATTGTCAAAACACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CAA 90 bp TATTCTAAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCATTGGGCTTCGATACTTaGATCCCTTCCTCCAGGGCA +
Preference number: 5 (lower is better)
Translates to: YSKALIPEKTIYPPLGLPLGFDT*IPSSRA
Trigger: TGCCCTGGAGGAAGGGATCAAAGTATCGAAGCCCAA...TGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTTAGAATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS TCA 90 bp CTTGTTCTTGTTGACAAGAGAAAGCTCTTTGGCTGTTACTCTCAATaGCAGGGAAGTCCACTGGCGTCTATTAAATGGAGTCGATTCCAT +
Preference number: 5 (lower is better)
Translates to: LVLVDKRKLFGCYSQ*QGSPLASIKWSRFH
Trigger: ATGGAATCGACTCCATTTAATAGACGCCAGTGGACTTCCCTGTCATTGAGAGTAACAGCCAAAGAGCTTTCTCTTGTCAACAAGAACAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS-3UTR CAA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCAGCAGCCTTCTGGTACTaGGAGAATATTTCCACAATT +
Preference number: 5 (lower is better)
Translates to: KALIPEKTIYPPLGLPASAAFWY*ENISTI
Trigger: AATTGTGGAAATATTCTCCAAGTACCAGAAGGCTGC...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS TCA 90 bp GGTACTTGGAGAATATTTCCACAATTGCGGATGACTTGTTCTTGTTaGCAAGAGAAAGCTCTTTGGCTGTTACTCTCAATGACAGGGAAG +
Preference number: 5 (lower is better)
Translates to: GTWRIFPQLRMTCSC*QEKALWLLLSMTGK
Trigger: CTTCCCTGTCATTGAGAGTAACAGCCAAAGAGCTTTCTCTTGTCAACAAGAACAAGTCATCCGCAATTGTGGAAATATTCTCCAAGTACC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS TCA 90 bp TTCAGCAGCCTTCTGGTACTTGGAGAATATTTCCACAATTGCGGATaGCTTGTTCTTGTTGACAAGAGAAAGCTCTTTGGCTGTTACTCT +
Preference number: 5 (lower is better)
Translates to: FSSLLVLGEYFHNCG*LVLVDKRKLFGCYS
Trigger: AGAGTAACAGCCAAAGAGCTTTCTCTTGTCAACAAGAACAAGTCATCCGCAATTGTGGAAATATTCTCCAAGTACCAGAAGGCTGCTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS-3UTR CAA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCATTTGGACTTGAAGAGTaGATTGAAGTGAGGCTTACA +
Preference number: 5 (lower is better)
Translates to: KALIPEKTIYPPLGLPASFGLEE*IEVRLT
Trigger: TGTAAGCCTCACTTCAATCAACTCTTCAAGTCCAAA...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp AAAGCCTTAATACCAGAGAAAACCATCTATCCTCCTCTGGGTTTACCAGCCTCAGACATCTTGGGATTTTaGATTCTGGGTAGTGAATTC +
Preference number: 5 (lower is better)
Translates to: KALIPEKTIYPPLGLPASDILGF*ILGSEF
Trigger: GAATTCACTACCCAGAATCAAAAATCCCAAGATGTC...TGAGGCTGGTAAACCCAGAGGAGGATAGATGGTTTTCTCTGGTATTAAGGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS-3UTR CAA 90 bp ACCACCACACCAGGCTTAAAAGATCACTGGTGTTTTGACAATGCGCTTAGAATTACAATTGCGGATGACTaGTTCTTGTTGACAAGAGAA +
Preference number: 5 (lower is better)
Translates to: TTTPGLKDHWCFDNALRITIADD*FLLTRE
Trigger: TTCTCTTGTCAACAAGAACAAGTCATCCGCAATTGT...AATTCTAAGCGCATTGTCAAAACACCAGTGATCTTTTAAGCCTGGTGTGGTGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS-3UTR CAA 90 bp GGTGTTTTGACAATGCGCTTAGAATTGGTTTTGGGTGAGTTTGTTTGTCTGTTTGACATCTTGGGATTTTaGATTCTGGGTAGTGAATTC +
Preference number: 5 (lower is better)
Translates to: GVLTMRLELVLGEFVCLFDILGF*ILGSEF
Trigger: GAATTCACTACCCAGAATCAAAAATCCCAAGATGTC...AAACAGACAAACAAACTCACCCAAAACCAATTCTAAGCGCATTGTCAAAACACC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 72 bp TTCCTCCAGGGCACTTCCGGAACCGCCCAGCTCGGCTaGCGGAGGCCAGGCGATCCTCAGCTTCTTGGTCTC +
Preference number: 6 (lower is better)
Translates to: FLQGTSGTAQLG*RRPGDPQLLGL
Trigger: GAGACCAAGAAGCTGAGGATCGCCTGGCCTCCGCCAGCCGAGCTGGGCGGTTCCGGAAGTGCCCTGGAGGAA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS GCA 72 bp CTGGAGGTCCTGGCGTCAGGACTCAGCGGCTTAGGGTaGATAGGCTGCTGGGCCTCGCTCTTCACCTGGGAG +
Preference number: 6 (lower is better)
Translates to: LEVLASGLSGLG*IGCWASLFTWE
Trigger: CTCCCAGGTGAAGAGCGAGGCCCAGCAGCCTATGCACCCTAAGCCGCTGAGTCCTGACGCCAGGACCTCCAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 72 bp GCTCGGCTGGCGGAGGCCAGGCGATCCTCAGCTTCTTaGTCTCCGCAGGCTTATCCTCCCTCTCCCTCTGAG +
Preference number: 6 (lower is better)
Translates to: ARLAEARRSSAS*SPQAYPPSPSE
Trigger: CTCAGAGGGAGAGGGAGGATAAGCCTGCGGAGACCAAGAAGCTGAGGATCGCCTGGCCTCCGCCAGCCGAGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 72 bp CTTCCATACTTGCCGCCAGCACGCCGACCTTGGCGATaGGGGCATCTTCTACACCCGGGCTATGGGGGCTCT +
Preference number: 6 (lower is better)
Translates to: LPYLPPARRPWR*GHLLHPGYGGS
Trigger: AGAGCCCCCATAGCCCGGGTGTAGAAGATGCCCCCATCGCCAAGGTCGGCGTGCTGGCGGCAAGTATGGAAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 72 bp CCTTGGCTTCCATACTTGCCGCCAGCACGCCGACCTTaGCGATGGGGGCATCTTCTACACCCGGGCTATGGG +
Preference number: 6 (lower is better)
Translates to: PWLPYLPPARRP*RWGHLLHPGYG
Trigger: CCCATAGCCCGGGTGTAGAAGATGCCCCCATCGCCAAGGTCGGCGTGCTGGCGGCAAGTATGGAAGCCAAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp GCCTTGGCTTCCATACTTGCCGCCAGCACGCCGACCTaGGCGATGGGGGCATCTTCTACACCCGGGCTATGG +
Preference number: 6 (lower is better)
Translates to: ALASILAASTPT*AMGASSTPGLW
Trigger: CCATAGCCCGGGTGTAGAAGATGCCCCCATCGCCAAGGTCGGCGTGCTGGCGGCAAGTATGGAAGCCAAGGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS GCA 72 bp TCAGGTCCAGATCTACATCCTCCGGGGCCTCCGTCTTaGAGACGTCATCCTCCGGAGGCCACTTGGGCTTCG +
Preference number: 6 (lower is better)
Translates to: SGPDLHPPGPPS*RRHPPEATWAS
Trigger: CGAAGCCCAAGTGGCCTCCGGAGGATGACGTCTGCAAGACGGAGGCCCCGGAGGATGTAGATCTGGACCTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 90 bp CAGCAGGAGGGTAGTCCGCTGTGTGCCCACCCTCACTGCTGCTGTTaGGCAGTGAGTCTGTGTGGAATTCTGCCCCAGCCACCGGGTTCT +
Preference number: 6 (lower is better)
Translates to: QQEGSPLCAHPHCCC*AVSLCGILPQPPGS
Trigger: AGAACCCGGTGGCTGGGGCAGAATTCCACACAGACTCACTGCCAAACAGCAGCAGTGAGGGTGGGCACACAGCGGACTACCCTCCTGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS CAA 90 bp GTCTTGCAGACGTCATCCTCCGGAGGCCACTTGGGCTTCGATACTTaGATCCCTTCCTCCAGGGCACTTCCGGAACCGCCCAGCTCGGCT +
Preference number: 6 (lower is better)
Translates to: VLQTSSSGGHLGFDT*IPSSRALPEPPSSA
Trigger: AGCCGAGCTGGGCGGTTCCGGAAGTGCCCTGGAGGAAGGGATCAAAGTATCGAAGCCCAAGTGGCCTCCGGAGGATGACGTCTGCAAGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 90 bp TCCTCCGGGGCCTCCGTCTTGCAGACGTCATCCTCCGGAGGCCACTaGGGCTTCGATACTTTGATCCCTTCCTCCAGGGCACTTCCGGAA +
Preference number: 6 (lower is better)
Translates to: SSGASVLQTSSSGGH*GFDTLIPSSRALPE
Trigger: TTCCGGAAGTGCCCTGGAGGAAGGGATCAAAGTATCGAAGCCCAAGTGGCCTCCGGAGGATGACGTCTGCAAGACGGAGGCCCCGGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS TCA 72 bp CGTCATCCTCCGGAGGCCACTTGGGCTTCGATACTTTaGTCCCTTCCTCCAGGGCACTTCCGGAACCGCCCA +
Preference number: 6 (lower is better)
Translates to: RHPPEATWASIL*SLPPGHFRNRP
Trigger: TGGGCGGTTCCGGAAGTGCCCTGGAGGAAGGGATCAAAGTATCGAAGCCCAAGTGGCCTCCGGAGGATGACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp ACGTCATCCTCCGGAGGCCACTTGGGCTTCGATACTTaGATCCCTTCCTCCAGGGCACTTCCGGAACCGCCC +
Preference number: 6 (lower is better)
Translates to: TSSSGGHLGFDT*IPSSRALPEPP
Trigger: GGGCGGTTCCGGAAGTGCCCTGGAGGAAGGGATCAAAGTATCGAAGCCCAAGTGGCCTCCGGAGGATGACGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp TTCAGGTCCAGATCTACATCCTCCGGGGCCTCCGTCTaGCAGACGTCATCCTCCGGAGGCCACTTGGGCTTC +
Preference number: 6 (lower is better)
Translates to: FRSRSTSSGASV*QTSSSGGHLGF
Trigger: GAAGCCCAAGTGGCCTCCGGAGGATGACGTCTGCAAGACGGAGGCCCCGGAGGATGTAGATCTGGACCTGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS GCA 72 bp CAGGAGGGTAGTCCGCTGTGTGCCCACCCTCACTGCTaGTGTTTGGCAGTGAGTCTGTGTGGAATTCTGCCC +
Preference number: 6 (lower is better)
Translates to: QEGSPLCAHPHC*CLAVSLCGILP
Trigger: GGGCAGAATTCCACACAGACTCACTGCCAAACAGCAGCAGTGAGGGTGGGCACACAGCGGACTACCCTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS GCA 72 bp TCCGGACGAGATCCAAATCTAGGTTTGGGCTGGGTGTaGTCTTCCCGGTCAGCTCTGACTCCAGGAGCAGGC +
Preference number: 6 (lower is better)
Translates to: SGRDPNLGLGWV*SSRSALTPGAG
Trigger: GCCTGCTCCTGGAGTCAGAGCTGACCGGGAAGAGCACACCCAGCCCAAACCTAGATTTGGATCTCGTCCGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS CCA 72 bp CCACCCTCACTGCTGCTGTTTGGCAGTGAGTCTGTGTaGAATTCTGCCCCAGCCACCGGGTTCTCCCACTTC +
Preference number: 6 (lower is better)
Translates to: PPSLLLFGSESV*NSAPATGFSHF
Trigger: GAAGTGGGAGAACCCGGTGGCTGGGGCAGAATTCCACACAGACTCACTGCCAAACAGCAGCAGTGAGGGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS CAA 72 bp GGTAGTCCGCTGTGTGCCCACCCTCACTGCTGCTGTTaGGCAGTGAGTCTGTGTGGAATTCTGCCCCAGCCA +
Preference number: 6 (lower is better)
Translates to: GSPLCAHPHCCC*AVSLCGILPQP
Trigger: TGGCTGGGGCAGAATTCCACACAGACTCACTGCCAAACAGCAGCAGTGAGGGTGGGCACACAGCGGACTACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS CAA 72 bp GCCTCCGTCTTGCAGACGTCATCCTCCGGAGGCCACTaGGGCTTCGATACTTTGATCCCTTCCTCCAGGGCA +
Preference number: 6 (lower is better)
Translates to: ASVLQTSSSGGH*GFDTLIPSSRA
Trigger: TGCCCTGGAGGAAGGGATCAAAGTATCGAAGCCCAAGTGGCCTCCGGAGGATGACGTCTGCAAGACGGAGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 90 bp CGCAGCTTCTTCAGGTCCAGATCTACATCCTCCGGGGCCTCCGTCTaGCAGACGTCATCCTCCGGAGGCCACTTGGGCTTCGATACTTTG +
Preference number: 6 (lower is better)
Translates to: RSFFRSRSTSSGASV*QTSSSGGHLGFDTL
Trigger: CAAAGTATCGAAGCCCAAGTGGCCTCCGGAGGATGACGTCTGCAAGACGGAGGCCCCGGAGGATGTAGATCTGGACCTGAAGAAGCTGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 90 bp GCGGCTGGGCTGGTCTCCCCAAAGTCTCCTCATTGTCGCTCTTGCTaGCCCACAGATCCTTATGCTGCTTGTGCCCAAAGCCCTCGTCAT +
Preference number: 6 (lower is better)
Translates to: AAGLVSPKSPHCRSC*PTDPYAACAQSPRH
Trigger: ATGACGAGGGCTTTGGGCACAAGCAGCATAAGGATCTGTGGGCAAGCAAGAGCGACAATGAGGAGACTTTGGGGAGACCAGCCCAGCCGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 90 bp TTAGGCGGCTGGGCTGGTCTCCCCAAAGTCTCCTCATTGTCGCTCTaGCTTGCCCACAGATCCTTATGCTGCTTGTGCCCAAAGCCCTCG +
Preference number: 6 (lower is better)
Translates to: LGGWAGLPKVSSLSL*LAHRSLCCLCPKPS
Trigger: CGAGGGCTTTGGGCACAAGCAGCATAAGGATCTGTGGGCAAGCAAGAGCGACAATGAGGAGACTTTGGGGAGACCAGCCCAGCCGCCTAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 90 bp TCCCCTGCATTAGGCGGCTGGGCTGGTCTCCCCAAAGTCTCCTCATaGTCGCTCTTGCTTGCCCACAGATCCTTATGCTGCTTGTGCCCA +
Preference number: 6 (lower is better)
Translates to: SPALGGWAGLPKVSS*SLLLAHRSLCCLCP
Trigger: TGGGCACAAGCAGCATAAGGATCTGTGGGCAAGCAAGAGCGACAATGAGGAGACTTTGGGGAGACCAGCCCAGCCGCCTAATGCAGGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS TCA 72 bp GTCCTTGCTCCTCGGCACTTCCTCGCCCTGCCAGCGTaGTTTTCCCACATTCTCTTTCTCCCCAGAGGGTCT +
Preference number: 6 (lower is better)
Translates to: VLAPRHFLALPA*FSHILFLPRGS
Trigger: AGACCCTCTGGGGAGAAAGAGAATGTGGGAAAATCACGCTGGCAGGGCGAGGAAGTGCCGAGGAGCAAGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 72 bp CTGGGCTGCTCTGCTTGGACACTGCAGCCTGGTACTTaGCCATGCGGTCCTTTATGGAGGTTTCTGAGAGGC +
Preference number: 6 (lower is better)
Translates to: LGCSAWTLQPGT*PCGPLWRFLRG
Trigger: GCCTCTCAGAAACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 72 bp TGTGAAACACCTGCTGGTTGGCCAGGAGCCGTTCCATaGGGTACACCGTCTTCTGACACTCCACGCAGCTCT +
Preference number: 6 (lower is better)
Translates to: CETPAGWPGAVP*GTPSSDTPRSS
Trigger: AGAGCTGCGTGGAGTGTCAGAAGACGGTGTACCCCATGGAACGGCTCCTGGCCAACCAGCAGGTGTTTCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp GCTGGGCTGCTCTGCTTGGACACTGCAGCCTGGTACTaGGCCATGCGGTCCTTTATGGAGGTTTCTGAGAGG +
Preference number: 6 (lower is better)
Translates to: AGLLCLDTAAWY*AMRSFMEVSER
Trigger: CCTCTCAGAAACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGCAGCCCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS GCA 72 bp TGCTCTGCTTGGACACTGCAGCCTGGTACTTGGCCATaGGGTCCTTTATGGAGGTTTCTGAGAGGCGTGGCA +
Preference number: 6 (lower is better)
Translates to: CSAWTLQPGTWP*GPLWRFLRGVA
Trigger: TGCCACGCCTCTCAGAAACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAGTGTCCAAGCAGAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 72 bp ACACTGCAGCCTGGTACTTGGCCATGCGGTCCTTTATaGAGGTTTCTGAGAGGCGTGGCAGCTCCAGATTCC +
Preference number: 6 (lower is better)
Translates to: TLQPGTWPCGPL*RFLRGVAAPDS
Trigger: GGAATCTGGAGCTGCCACGCCTCTCAGAAACCTCCATAAAGGACCGCATGGCCAAGTACCAGGCTGCAGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 72 bp GCTTCCTTCCTGATGGACGCTGCAGGCCTCGGGACCTaGGGGCACATTCTCCTTCTGTTCCCATTTATGAGT +
Preference number: 6 (lower is better)
Translates to: ASFLMDAAGLGT*GHILLLFPFMS
Trigger: ACTCATAAATGGGAACAGAAGGAGAATGTGCCCCCAGGTCCCGAGGCCTGCAGCGTCCATCAGGAAGGAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 72 bp CCCGGAGCCTCGGGTTCTAACGGGGACTGCTGTGCGTaGACATGGTTGTCATCTTCAGCTATGTTTGCTCCA +
Preference number: 6 (lower is better)
Translates to: PGASGSNGDCCA*TWLSSSAMFAP
Trigger: TGGAGCAAACATAGCTGAAGATGACAACCATGTCCACGCACAGCAGTCCCCGTTAGAACCCGAGGCTCCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS GCA 72 bp GTACACCGTCTTCTGACACTCCACGCAGCTCTCCTTTaGCGGCGCCTGAAACTTCTTCGCTGTTTTGGAAGG +
Preference number: 6 (lower is better)
Translates to: VHRLLTLHAALL*RRLKLLRCFGR
Trigger: CCTTCCAAAACAGCGAAGAAGTTTCAGGCGCCGGCAAAGGAGAGCTGCGTGGAGTGTCAGAAGACGGTGTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp GGTACACCGTCTTCTGACACTCCACGCAGCTCTCCTTaGCCGGCGCCTGAAACTTCTTCGCTGTTTTGGAAG +
Preference number: 6 (lower is better)
Translates to: GTPSSDTPRSSP*PAPETSSLFWK
Trigger: CTTCCAAAACAGCGAAGAAGTTTCAGGCGCCGGCAAAGGAGAGCTGCGTGGAGTGTCAGAAGACGGTGTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp TGGGCTGGTCTCCCCAAAGTCTCCTCATTGTCGCTCTaGCTTGCCCACAGATCCTTATGCTGCTTGTGCCCA +
Preference number: 6 (lower is better)
Translates to: WAGLPKVSSLSL*LAHRSLCCLCP
Trigger: TGGGCACAAGCAGCATAAGGATCTGTGGGCAAGCAAGAGCGACAATGAGGAGACTTTGGGGAGACCAGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS TCA 72 bp CTGGTACTTGGCCATGCGGTCCTTTATGGAGGTTTCTaGGAGGCGTGGCAGCTCCAGATTCCTCTTACTCTC +
Preference number: 6 (lower is better)
Translates to: LVLGHAVLYGGF*EAWQLQIPLTL
Trigger: GAGAGTAAGAGGAATCTGGAGCTGCCACGCCTCTCAGAAACCTCCATAAAGGACCGCATGGCCAAGTACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS GCA 72 bp AATTCTCACTCTCCAGCTCAAAAGAACTACGGTCCTTaGTCCTCGGCACTTCCTCGCCCTGCCAGCGTGATT +
Preference number: 6 (lower is better)
Translates to: NSHSPAQKNYGP*SSALPRPASVI
Trigger: AATCACGCTGGCAGGGCGAGGAAGTGCCGAGGAGCAAGGACCGTAGTTCTTTTGAGCTGGAGAGTGAGAATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp TGGATAACTGCTTCCGGACGAGATCCAAATCTAGGTTaGGGCTGGGTGTGCTCTTCCCGGTCAGCTCTGACT +
Preference number: 6 (lower is better)
Translates to: WITASGRDPNLG*GWVCSSRSALT
Trigger: AGTCAGAGCTGACCGGGAAGAGCACACCCAGCCCAAACCTAGATTTGGATCTCGTCCGGAAGCAGTTATCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000073691.5
CDS CAA 72 bp CCTTTCCTGAGAGATGGCGAAGAGGCCTTGGGGCTCTaGATGGAAGAGGTTCGAAAGGAAGCTGCTACCGTA +
Preference number: 6 (lower is better)
Translates to: PFLRDGEEALGL*MEEVRKEAATV
Trigger: TACGGTAGCAGCTTCCTTTCGAACCTCTTCCATCAAGAGCCCCAAGGCCTCTTCGCCATCTCTCAGGAAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp TCGCTCCAACCTTTCCTGAGAGATGGCGAAGAGGCCTaGGGGCTCTTGATGGAAGAGGTTCGAAAGGAAGCT +
Preference number: 6 (lower is better)
Translates to: SLQPFLRDGEEA*GLLMEEVRKEA
Trigger: AGCTTCCTTTCGAACCTCTTCCATCAAGAGCCCCAAGGCCTCTTCGCCATCTCTCAGGAAAGGTTGGAGCGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 72 bp GCCTCGGGTTCTAACGGGGACTGCTGTGCGTGGACATaGTTGTCATCTTCAGCTATGTTTGCTCCATTTTCC +
Preference number: 6 (lower is better)
Translates to: ASGSNGDCCAWT*LSSSAMFAPFS
Trigger: GGAAAATGGAGCAAACATAGCTGAAGATGACAACCATGTCCACGCACAGCAGTCCCCGTTAGAACCCGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp GTTTTCAGAGAGCCTCCTTCCACCCGCATTTCGGCTTaGGGTCCAGAGACTCTTGGTTTGGTTGTGTTCACC +
Preference number: 6 (lower is better)
Translates to: VFREPPSTRISA*GPETLGLVVFT
Trigger: GGTGAACACAACCAAACCAAGAGTCTCTGGACCCAAAGCCGAAATGCGGGTGGAAGGAGGCTCTCTGAAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 72 bp TTTTCAGAGAGCCTCCTTCCACCCGCATTTCGGCTTTaGGTCCAGAGACTCTTGGTTTGGTTGTGTTCACCT +
Preference number: 6 (lower is better)
Translates to: FSESLLPPAFRL*VQRLLVWLCSP
Trigger: AGGTGAACACAACCAAACCAAGAGTCTCTGGACCCAAAGCCGAAATGCGGGTGGAAGGAGGCTCTCTGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 90 bp GGAACAGTTGTTTTCAGAGAGCCTCCTTCCACCCGCATTTCGGCTTaGGGTCCAGAGACTCTTGGTTTGGTTGTGTTCACCTTTCTCAAA +
Preference number: 6 (lower is better)
Translates to: GTVVFREPPSTRISA*GPETLGLVVFTFLK
Trigger: TTTGAGAAAGGTGAACACAACCAAACCAAGAGTCTCTGGACCCAAAGCCGAAATGCGGGTGGAAGGAGGCTCTCTGAAAACAACTGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 90 bp CTCTCGGACCACTTCTCCCTCCCAGAACCCGACATCTTGGGATTTTaGATTCTGGGTAGTGAATTCTTTAGCAGCCGTGGTGTCTACAAA +
Preference number: 6 (lower is better)
Translates to: LSDHFSLPEPDILGF*ILGSEFFSSRGVYK
Trigger: TTTGTAGACACCACGGCTGCTAAAGAATTCACTACCCAGAATCAAAAATCCCAAGATGTCGGGTTCTGGGAGGGAGAAGTGGTCCGAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS TCA 72 bp ACTTCTCCCTCCCAGAACCCGACATCTTGGGATTTTTaGTTCTGGGTAGTGAATTCTTTAGCAGCCGTGGTG +
Preference number: 6 (lower is better)
Translates to: TSPSQNPTSWDF*FWVVNSLAAVV
Trigger: CACCACGGCTGCTAAAGAATTCACTACCCAGAATCAAAAATCCCAAGATGTCGGGTTCTGGGAGGGAGAAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp CACTTCTCCCTCCCAGAACCCGACATCTTGGGATTTTaGATTCTGGGTAGTGAATTCTTTAGCAGCCGTGGT +
Preference number: 6 (lower is better)
Translates to: HFSLPEPDILGF*ILGSEFFSSRG
Trigger: ACCACGGCTGCTAAAGAATTCACTACCCAGAATCAAAAATCCCAAGATGTCGGGTTCTGGGAGGGAGAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp CTCTCGGACCACTTCTCCCTCCCAGAACCCGACATCTaGGGATTTTTGATTCTGGGTAGTGAATTCTTTAGC +
Preference number: 6 (lower is better)
Translates to: LSDHFSLPEPDI*GFLILGSEFFS
Trigger: GCTAAAGAATTCACTACCCAGAATCAAAAATCCCAAGATGTCGGGTTCTGGGAGGGAGAAGTGGTCCGAGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CCA 72 bp CCCGCATTTCGGCTTTGGGTCCAGAGACTCTTGGTTTaGTTGTGTTCACCTTTCTCAAACATCATCTTCAGT +
Preference number: 6 (lower is better)
Translates to: PAFRLWVQRLLV*LCSPFSNIIFS
Trigger: ACTGAAGATGATGTTTGAGAAAGGTGAACACAACCAAACCAAGAGTCTCTGGACCCAAAGCCGAAATGCGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp ACCCGCATTTCGGCTTTGGGTCCAGAGACTCTTGGTTaGGTTGTGTTCACCTTTCTCAAACATCATCTTCAG +
Preference number: 6 (lower is better)
Translates to: TRISALGPETLG*VVFTFLKHHLQ
Trigger: CTGAAGATGATGTTTGAGAAAGGTGAACACAACCAAACCAAGAGTCTCTGGACCCAAAGCCGAAATGCGGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS TCA 72 bp GCTCCAGATTCCTCTTACTCTCGTTTTTCTCCGAGTTaGATGCAGAGGAAGACAAATGACCCGCACCTATTT +
Preference number: 6 (lower is better)
Translates to: APDSSYSRFSPS*MQRKTNDPHLF
Trigger: AAATAGGTGCGGGTCATTTGTCTTCCTCTGCATTCAACTCGGAGAAAAACGAGAGTAAGAGGAATCTGGAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 90 bp TCCACAATTGCGGATGACTTGTTCTTGTTGACAAGAGAAAGCTCTTaGGCTGTTACTCTCAATGACAGGGAAGTCCACTGGCGTCTATTA +
Preference number: 6 (lower is better)
Translates to: STIADDLFLLTRESS*AVTLNDREVHWRLL
Trigger: TAATAGACGCCAGTGGACTTCCCTGTCATTGAGAGTAACAGCCAAAGAGCTTTCTCTTGTCAACAAGAACAAGTCATCCGCAATTGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS TCA 72 bp GTTGACAAGAGAAAGCTCTTTGGCTGTTACTCTCAATaGCAGGGAAGTCCACTGGCGTCTATTAAATGGAGT +
Preference number: 6 (lower is better)
Translates to: VDKRKLFGCYSQ*QGSPLASIKWS
Trigger: ACTCCATTTAATAGACGCCAGTGGACTTCCCTGTCATTGAGAGTAACAGCCAAAGAGCTTTCTCTTGTCAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS GCA 72 bp CTGTGCGTGGACATGGTTGTCATCTTCAGCTATGTTTaGTCCATTTTCCATAAAATTCTCACTCTCCAGCTC +
Preference number: 6 (lower is better)
Translates to: LCVDMVVIFSYV*SIFHKILTLQL
Trigger: GAGCTGGAGAGTGAGAATTTTATGGAAAATGGAGCAAACATAGCTGAAGATGACAACCATGTCCACGCACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 72 bp GCATTTCGGCTTTGGGTCCAGAGACTCTTGGTTTGGTaGTGTTCACCTTTCTCAAACATCATCTTCAGTCTA +
Preference number: 6 (lower is better)
Translates to: AFRLWVQRLLVW*CSPFSNIIFSL
Trigger: TAGACTGAAGATGATGTTTGAGAAAGGTGAACACAACCAAACCAAGAGTCTCTGGACCCAAAGCCGAAATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS CAA 90 bp GCAGCCTTCTGGTACTTGGAGAATATTTCCACAATTGCGGATGACTaGTTCTTGTTGACAAGAGAAAGCTCTTTGGCTGTTACTCTCAAT +
Preference number: 6 (lower is better)
Translates to: AAFWYLENISTIADD*FLLTRESSLAVTLN
Trigger: ATTGAGAGTAACAGCCAAAGAGCTTTCTCTTGTCAACAAGAACAAGTCATCCGCAATTGTGGAAATATTCTCCAAGTACCAGAAGGCTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS TCA 72 bp CTTCTGGTACTTGGAGAATATTTCCACAATTGCGGATaGCTTGTTCTTGTTGACAAGAGAAAGCTCTTTGGC +
Preference number: 6 (lower is better)
Translates to: LLVLGEYFHNCG*LVLVDKRKLFG
Trigger: GCCAAAGAGCTTTCTCTTGTCAACAAGAACAAGTCATCCGCAATTGTGGAAATATTCTCCAAGTACCAGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS CAA 90 bp TGGTACTTGGAGAATATTTCCACAATTGCGGATGACTTGTTCTTGTaGACAAGAGAAAGCTCTTTGGCTGTTACTCTCAATGACAGGGAA +
Preference number: 6 (lower is better)
Translates to: WYLENISTIADDLFL*TRESSLAVTLNDRE
Trigger: TTCCCTGTCATTGAGAGTAACAGCCAAAGAGCTTTCTCTTGTCAACAAGAACAAGTCATCCGCAATTGTGGAAATATTCTCCAAGTACCA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS CAA 72 bp TGGTACTTGGAGAATATTTCCACAATTGCGGATGACTaGTTCTTGTTGACAAGAGAAAGCTCTTTGGCTGTT +
Preference number: 6 (lower is better)
Translates to: WYLENISTIADD*FLLTRESSLAV
Trigger: AACAGCCAAAGAGCTTTCTCTTGTCAACAAGAACAAGTCATCCGCAATTGTGGAAATATTCTCCAAGTACCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS CAA 90 bp TGTTCACCTTTCTCAAACATCATCTTCAGTCTATTCAGTGGAACGTaGTATTTCTCTATTTTGCCTGAAGTTTCTGTGTTTTCGCTCGTC +
Preference number: 6 (lower is better)
Translates to: CSPFSNIIFSLFSGT*YFSILPEVSVFSLV
Trigger: GACGAGCGAAAACACAGAAACTTCAGGCAAAATAGAGAAATACAACGTTCCACTGAATAGACTGAAGATGATGTTTGAGAAAGGTGAACA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000109024.9
CDS TCA 72 bp AGAATATTTCCACAATTGCGGATGACTTGTTCTTGTTaGCAAGAGAAAGCTCTTTGGCTGTTACTCTCAATG +
Preference number: 6 (lower is better)
Translates to: RIFPQLRMTCSC*QEKALWLLLSM
Trigger: CATTGAGAGTAACAGCCAAAGAGCTTTCTCTTGTCAACAAGAACAAGTCATCCGCAATTGTGGAAATATTCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2
CDS CAA 72 bp GAGAATATTTCCACAATTGCGGATGACTTGTTCTTGTaGACAAGAGAAAGCTCTTTGGCTGTTACTCTCAAT +
Preference number: 6 (lower is better)
Translates to: ENISTIADDLFL*TRESSLAVTLN
Trigger: ATTGAGAGTAACAGCCAAAGAGCTTTCTCTTGTCAACAAGAACAAGTCATCCGCAATTGTGGAAATATTCTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000073691.5
ENSMUST00000231121.2