RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LIM2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000118560

Ensembl transcript IDs: ENSMUST00000004732.7

Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACACAGGACAGAGGGATCAGGGGCTCCCTATCTAGAATCCAGGACTaGGCCCCCTCATTCCCTCAGGAGCCAGGACTTCCGGCCTCTAGG +
Preference number: 1 (lower is better)
Translates to: TQDRGIRGSLSRIQD*APSFPQEPGLPASR
Trigger: CCTAGAGGCCGGAAGTCCTGGCTCCTGAGGGAATGAGGGGGCTCAGTCCTGGATTCTAGATAGGGAGCCCCTGATCCCTCTGTCCTGTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
3UTR TCA 72 bp AGAGGGATCAGGGGCTCCCTATCTAGAATCCAGGACTaGGCCCCCTCATTCCCTCAGGAGCCAGGACTTCCG +
Preference number: 3 (lower is better)
Translates to: RGIRGSLSRIQD*APSFPQEPGLP
Trigger: CGGAAGTCCTGGCTCCTGAGGGAATGAGGGGGCTCAGTCCTGGATTCTAGATAGGGAGCCCCTGATCCCTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR GCA 90 bp TCATTCCCTCAGGAGCCAGGACTTCCGGCCTCTAGGTCCTCCCCTTCCTCTTCACCACAGGCCCTGGTGTaGGAAGGACCCCGACAGCCG +
Preference number: 4 (lower is better)
Translates to: SFPQEPGLPASRSSPSSSPQALV*EGPRQP
Trigger: CGGCTGTCGGGGTCCTTCGCACACCAGGGCCTGTGG...TGAAGAGGAAGGGGAGGACCTAGAGGCCGGAAGTCCTGGCTCCTGAGGGAATGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR CCA 90 bp CCCCCTCATTCCCTCAGGAGCCAGGACTTCCGGCCTCTAGGTCCTCCCCTTCCTAGTGGTCAGTTGCTGTaGCTACCACCAACAGGATGG +
Preference number: 4 (lower is better)
Translates to: PPHSLRSQDFRPLGPPLPSGQLL*LPPTGW
Trigger: CCATCCTGTTGGTGGTAGCCACAGCAACTGACCACT...AGGAAGGGGAGGACCTAGAGGCCGGAAGTCCTGGCTCCTGAGGGAATGAGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR TCA 90 bp CTCAGGGCAGGTGGGGGCTTATGTCTTCTCAACTCCCTCCCACTTGACCCTACTGGGCAGACAGGATCATaGAAGCCCGGGTGGCATTCC +
Preference number: 4 (lower is better)
Translates to: LRAGGGLCLLNSLPLDPTGQTGS*KPGWHS
Trigger: GGAATGCCACCCGGGCTTTCATGATCCTGTCTGCCC...AGTAGGGTCAAGTGGGAGGGAGTTGAGAAGACATAAGCCCCCACCTGCCCTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR TCA 90 bp ACTCCCTCCCACTTGACCCTACTTTTCCTCCCCACACAGGACAGAGGGATCAGGCTGCAAAGAAGGTCATaGGCAGGGCCACCCAGCCCA +
Preference number: 4 (lower is better)
Translates to: TPSHLTLLFLPTQDRGIRLQRRS*AGPPSP
Trigger: TGGGCTGGGTGGCCCTGCTCATGACCTTCTTTGCAG...CCTGATCCCTCTGTCCTGTGTGGGGAGGAAAAGTAGGGTCAAGTGGGAGGGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR GCA 90 bp CCCCCTCATTCCCTCAGGAGCCAGGACTTCCGGCCTCTAGGTCCTCCCCTTCCTCATTCCAATATGCGATaGTCTCGGTCTGCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: PPHSLRSQDFRPLGPPLPHSNMR*SRSAGS
Trigger: GCTTCCTGCAGACCGAGAGCATCGCATATTGGAATG...AGGAAGGGGAGGACCTAGAGGCCGGAAGTCCTGGCTCCTGAGGGAATGAGGGGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR CCA 90 bp TCATTCCCTCAGGAGCCAGGACTTCCGGCCTCTAGGTCCTCCCCTTCCTCTTCACTACCACCAACAGGATaGTCCCCACCCAGGCACAGA +
Preference number: 4 (lower is better)
Translates to: SFPQEPGLPASRSSPSSSLPPTG*SPPRHR
Trigger: TCTGTGCCTGGGTGGGGACCATCCTGTTGGTGGTAG...TGAAGAGGAAGGGGAGGACCTAGAGGCCGGAAGTCCTGGCTCCTGAGGGAATGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR GCA 90 bp CTCAGGGCAGGTGGGGGCTTATGTCTTCTCAACTCCCTCCCACTTGACCCTACTCCCGACAGCCGGTACTaGATCCAGTGGTCAGTTGCT +
Preference number: 4 (lower is better)
Translates to: LRAGGGLCLLNSLPLDPTPDSRY*IQWSVA
Trigger: AGCAACTGACCACTGGATGCAGTACCGGCTGTCGGG...AGTAGGGTCAAGTGGGAGGGAGTTGAGAAGACATAAGCCCCCACCTGCCCTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR GCA 90 bp ACTCCCTCCCACTTGACCCTACTTTTCCTCCCCACACAGGACAGAGGGATCAGGGCGATGCTCTCGGTCTaGAGGAAGCACTTGTTGCCC +
Preference number: 4 (lower is better)
Translates to: TPSHLTLLFLPTQDRGIRAMLSV*RKHLLP
Trigger: GGGCAACAAGTGCTTCCTGCAGACCGAGAGCATCGC...CCTGATCCCTCTGTCCTGTGTGGGGAGGAAAAGTAGGGTCAAGTGGGAGGGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR GCA 90 bp ACTCCCTCCCACTTGACCCTACTTTTCCTCCCCACACAGGACAGAGGGATCAGGGTGAAGGTGGATTGCTaGGCAAAGGCTAGGACACCC +
Preference number: 4 (lower is better)
Translates to: TPSHLTLLFLPTQDRGIRVKVDC*AKARTP
Trigger: GGGTGTCCTAGCCTTTGCGCAGCAATCCACCTTCAC...CCTGATCCCTCTGTCCTGTGTGGGGAGGAAAAGTAGGGTCAAGTGGGAGGGAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR CCA 90 bp TTCCTCCCCACACAGGACAGAGGGATCAGGGGCTCCCTATCTAGAATCCAGGACCGGTACTGCATCCAGTaGTCAGTTGCTGTGGCTACC +
Preference number: 4 (lower is better)
Translates to: FLPTQDRGIRGSLSRIQDRYCIQ*SVAVAT
Trigger: GGTAGCCACAGCAACTGACCACTGGATGCAGTACCG...GTCCTGGATTCTAGATAGGGAGCCCCTGATCCCTCTGTCCTGTGTGGGGAGGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR TCA 90 bp TCCTCCCCACACAGGACAGAGGGATCAGGGGCTCCCTATCTAGAATCCAGGACTCAGGATGTAAGACCATaGAAAGCGCCAGTCTCCAAA +
Preference number: 4 (lower is better)
Translates to: SSPHRTEGSGAPYLESRTQDVRP*KAPVSK
Trigger: TTTGGAGACTGGCGCTTTTCATGGTCTTACATCCTG...AGTCCTGGATTCTAGATAGGGAGCCCCTGATCCCTCTGTCCTGTGTGGGGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR GCA 90 bp ACTCCCTCCCACTTGACCCTACTTTTCCTCCCCACACAGGACAGAGGGATCAGGCATGTAGAAAATTCCTaGAAAGAAGGTCATGAGCAG +
Preference number: 4 (lower is better)
Translates to: TPSHLTLLFLPTQDRGIRHVENS*KEGHEQ
Trigger: CTGCTCATGACCTTCTTTGCAGGAATTTTCTACATG...CCTGATCCCTCTGTCCTGTGTGGGGAGGAAAAGTAGGGTCAAGTGGGAGGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS CCA 90 bp AGGCCCTGGTGTGCGAAGGACCCCGACAGCCGGTACTGCATCCAGTaGTCAGTTGCTGTGGCTACCACCAACAGGATGGTCCCCACCCAG +
Preference number: 5 (lower is better)
Translates to: RPWCAKDPDSRYCIQ*SVAVATTNRMVPTQ
Trigger: CTGGGTGGGGACCATCCTGTTGGTGGTAGCCACAGCAACTGACCACTGGATGCAGTACCGGCTGTCGGGGTCCTTCGCACACCAGGGCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS GCA 90 bp CAGGAAGCACTTGTTGCCCAGGCAGTAACGCCACAGGCCCTGGTGTaGGAAGGACCCCGACAGCCGGTACTGCATCCAGTGGTCAGTTGC +
Preference number: 5 (lower is better)
Translates to: QEALVAQAVTPQALV*EGPRQPVLHPVVSC
Trigger: GCAACTGACCACTGGATGCAGTACCGGCTGTCGGGGTCCTTCGCACACCAGGGCCTGTGGCGTTACTGCCTGGGCAACAAGTGCTTCCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS CCA 90 bp CGAAGGACCCCGACAGCCGGTACTGCATCCAGTGGTCAGTTGCTGTaGCTACCACCAACAGGATGGTCCCCACCCAGGCACAGAAGAGGC +
Preference number: 5 (lower is better)
Translates to: RRTPTAGTASSGQLL*LPPTGWSPPRHRRG
Trigger: GCCTCTTCTGTGCCTGGGTGGGGACCATCCTGTTGGTGGTAGCCACAGCAACTGACCACTGGATGCAGTACCGGCTGTCGGGGTCCTTCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS GCA 90 bp GTGTGCGAAGGACCCCGACAGCCGGTACTGCATCCAGTGGTCAGTTaGTGTGGCTACCACCAACAGGATGGTCCCCACCCAGGCACAGAA +
Preference number: 5 (lower is better)
Translates to: VCEGPRQPVLHPVVS*CGYHQQDGPHPGTE
Trigger: TTCTGTGCCTGGGTGGGGACCATCCTGTTGGTGGTAGCCACAGCAACTGACCACTGGATGCAGTACCGGCTGTCGGGGTCCTTCGCACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS TCA 90 bp AAAGAAGGTCATGAGCAGGGCCACCCAGCCCAGGATGTAAGACCATaGAAAGCGCCAGTCTCCAAAGCGGCGGCCGAGGAAACTGACGGT +
Preference number: 5 (lower is better)
Translates to: KEGHEQGHPAQDVRP*KAPVSKAAAEETDG
Trigger: ACCGTCAGTTTCCTCGGCCGCCGCTTTGGAGACTGGCGCTTTTCATGGTCTTACATCCTGGGCTGGGTGGCCCTGCTCATGACCTTCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS-3UTR CAA 90 bp TCCTCCCCACACAGGACAGAGGGATCAGGGGCTCCCTATCTAGAATCCAGGACTGCATCCAGTGGTCAGTaGCTGTGGCTACCACCAACA +
Preference number: 5 (lower is better)
Translates to: SSPHRTEGSGAPYLESRTASSGQ*LWLPPT
Trigger: TGTTGGTGGTAGCCACAGCAACTGACCACTGGATGC...AGTCCTGGATTCTAGATAGGGAGCCCCTGATCCCTCTGTCCTGTGTGGGGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS CAA 90 bp GGTGTGCGAAGGACCCCGACAGCCGGTACTGCATCCAGTGGTCAGTaGCTGTGGCTACCACCAACAGGATGGTCCCCACCCAGGCACAGA +
Preference number: 6 (lower is better)
Translates to: GVRRTPTAGTASSGQ*LWLPPTGWSPPRHR
Trigger: TCTGTGCCTGGGTGGGGACCATCCTGTTGGTGGTAGCCACAGCAACTGACCACTGGATGCAGTACCGGCTGTCGGGGTCCTTCGCACACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS GCA 72 bp GGACCCCGACAGCCGGTACTGCATCCAGTGGTCAGTTaGTGTGGCTACCACCAACAGGATGGTCCCCACCCA +
Preference number: 6 (lower is better)
Translates to: GPRQPVLHPVVS*CGYHQQDGPHP
Trigger: TGGGTGGGGACCATCCTGTTGGTGGTAGCCACAGCAACTGACCACTGGATGCAGTACCGGCTGTCGGGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS GCA 72 bp AGGCCCTGGTGTGCGAAGGACCCCGACAGCCGGTACTaGATCCAGTGGTCAGTTGCTGTGGCTACCACCAAC +
Preference number: 6 (lower is better)
Translates to: RPWCAKDPDSRY*IQWSVAVATTN
Trigger: GTTGGTGGTAGCCACAGCAACTGACCACTGGATGCAGTACCGGCTGTCGGGGTCCTTCGCACACCAGGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS CCA 72 bp CCGACAGCCGGTACTGCATCCAGTGGTCAGTTGCTGTaGCTACCACCAACAGGATGGTCCCCACCCAGGCAC +
Preference number: 6 (lower is better)
Translates to: PTAGTASSGQLL*LPPTGWSPPRH
Trigger: GTGCCTGGGTGGGGACCATCCTGTTGGTGGTAGCCACAGCAACTGACCACTGGATGCAGTACCGGCTGTCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7
CDS CAA 72 bp AGGACCCCGACAGCCGGTACTGCATCCAGTGGTCAGTaGCTGTGGCTACCACCAACAGGATGGTCCCCACCC +
Preference number: 6 (lower is better)
Translates to: RTPTAGTASSGQ*LWLPPTGWSPP
Trigger: GGGTGGGGACCATCCTGTTGGTGGTAGCCACAGCAACTGACCACTGGATGCAGTACCGGCTGTCGGGGTCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000004732.7