RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for LIG1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000056394

Ensembl transcript IDs: ENSMUST00000098814.13, ENSMUST00000146998.9, ENSMUST00000165964.10, ENSMUST00000177588.10

Found 345 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 72 bp CTCCACACACACCAATCAACACCACCAATCCAACAGTaGCCATGTTCTCGCAACCTCCACCCCAGGCCCAGG +
Preference number: 3 (lower is better)
Translates to: LHTHQSTPPIQQ*PCSRNLHPRPR
Trigger: CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTGATTGGTGTGTGTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
3UTR TCA 72 bp AAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTaGCTCCACACACACCAATCAACACCACCAATCCAA +
Preference number: 3 (lower is better)
Translates to: KIKHSSPRISLL*LHTHQSTPPIQ
Trigger: TTGGATTGGTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGCTTGGCCAGGGGGTGTaGGGCTCACAGCCTGGGCAA +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQLGQGV*GSQPGQ
Trigger: TTGCCCAGGCTGTGAGCCTCACACCCCCTGGCCAAG...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCTTGGCCAGGGGGTGTaGGGCTCACAGCCTGGGCAA +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGELGQGV*GSQPGQ
Trigger: TTGCCCAGGCTGTGAGCCTCACACCCCCTGGCCAAG...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGGTCCACCAGGCCCCGTaGAGCAGGGTAGATGGGGGA +
Preference number: 4 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRVHQAP*SRVDGG
Trigger: TCCCCCATCTACCCTGCTGCACGGGGCCTGGTGGAC...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGCTTGGGTCCAGCCAATaGTCTGGGGCCACTGCCCCA +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQELGSSQ*SGATAP
Trigger: TGGGGCAGTGGCCCCAGACCATTGGCTGGACCCAAG...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGTCCACCAGGCCCCGTaGAGCAGGGTAGATGGGGGA +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPVHQAP*SRVDGG
Trigger: TCCCCCATCTACCCTGCTGCACGGGGCCTGGTGGAC...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGGCCTGCAGGCTCTaGTGGTGTTCCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRRACRL*WCSSSS
Trigger: GGAGCTGGAGGAACACCACCAGAGCCTGCAGGCCCT...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGAGGGCCTGCAGGCTCTaGTGGTGTTCCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQRACRL*WCSSSS
Trigger: GGAGCTGGAGGAACACCACCAGAGCCTGCAGGCCCT...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGCTTGGGTCCAGCCAATaGTCTGGGGCCACTGCCCCA +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQLGSSQ*SGATAP
Trigger: TGGGGCAGTGGCCCCAGACCATTGGCTGGACCCAAG...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGGGGTTCCTTCTCTCTaGTGCTGCTGGGTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEGVPSL*CCWVSP
Trigger: AGGAGACACCCAGCAGCATCAGAGAGAAGGAACCCC...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGCTCAGAGGGGACTATaGGCTGGTCCCCCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEAQRGL*AGPPPF
Trigger: AAAAGGAGGGGGACCAGCTCATAGTCCCCTCTGAGC...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGGGCAGCATGAGTCTCTaGGTGCTGCGGCTGTTCTCG +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGEGSMSL*VLRLFS
Trigger: CGAGAACAGCCGCAGCACTCAGAGACTCATGCTGCC...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGAGGTGGAGGCAGCATaGGTCTCTGAGTGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPEVEAA*VSECCG
Trigger: GCCGCAGCACTCAGAGACTCATGCTGCCTCCACCTC...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGGGCTCAGCTTGCAGTaGTCTGGGAGACGTTCCAGG +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQGLSLQ*SGRRSR
Trigger: CCTGGAACGTCTCCCAGAGCACTGCAAGCTGAGCCC...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGGGGCTCAGCTTGCAGTaGTCTGGGAGACGTTCCAGG +
Preference number: 4 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRGLSLQ*SGRRSR
Trigger: CCTGGAACGTCTCCCAGAGCACTGCAAGCTGAGCCC...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGTCTGACACAGGCTTCTaGACTTTGGGGGTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQESDTGF*TLGVPG
Trigger: CCCTGGCACCCCCAAAGTCCAGAAGCCTGTGTCAGA...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGACTACCTCAGCCCGGATaGACTCCAGCTGACGACCTG +
Preference number: 4 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRLPQPG*TPADDL
Trigger: CAGGTCGTCAGCTGGAGTCCATCCGGGCTGAGGTAG...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGCCCGCTTAGGGACCTaGCAATGTACCTGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEARLGT*QCTWLL
Trigger: CAGAAGCCAGGTACATTGCCAGGTCCCTAAGCGGGC...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGCAGCTTGCAGTGCTCTaGGAGACGTTCCAGGCCATG +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEQLAVL*ETFQAM
Trigger: CATGGCCTGGAACGTCTCCCAGAGCACTGCAAGCTG...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGGGGGTTCCTTCTCTCTaGTGCTGCTGGGTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGEGVPSL*CCWVSP
Trigger: AGGAGACACCCAGCAGCATCAGAGAGAAGGAACCCC...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGGCTCAGAGGGGACTATaGGCTGGTCCCCCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRAQRGL*AGPPPF
Trigger: AAAAGGAGGGGGACCAGCTCATAGTCCCCTCTGAGC...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGTGCGCTTGCGCGTGGTaGGTACTTGGAATGGTTGGA +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQECACAW*VLGMVG
Trigger: TCCAACCATTCCAAGTACTCACCACGCGCAAGCGCA...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCCAGCTCCTCATCGCTaGATCCAGTTCCCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGEPAPHR*IQFPAC
Trigger: GCAAGCTGGGAACTGGATTCAGCGATGAGGAGCTGG...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGCCAGCTCCTCATCGCTaGATCCAGTTCCCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRPAPHR*IQFPAC
Trigger: GCAAGCTGGGAACTGGATTCAGCGATGAGGAGCTGG...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGCGGAGCGCAGCAGGTTaGTCAATGTCTCCACCATCT +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQERSAAG*SMSPPS
Trigger: AGATGGTGGAGACATTGAGCAACCTGCTGCGCTCCG...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGTGGCCTGCTCTGGCTaGTTGTCTTTACGGACACGA +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEVACSG*LSLRTR
Trigger: TCGTGTCCGTAAAGACAAGCAGCCAGAGCAGGCCAC...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGACATGTGTCAGGGCTaGGAGGAGAGCTCTGTTCAG +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEDMCQG*EESSVQ
Trigger: CTGAACAGAGCTCTCCTCCCAGCCCTGACACATGTC...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCACTACCTCAGCCCGGATaGACTCCAGCTGACGACCTG +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPLPQPG*TPADDL
Trigger: CAGGTCGTCAGCTGGAGTCCATCCGGGCTGAGGTAG...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGACCTGGCAATGTACCTaGCTTCTGAGTGGCGGCAGG +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQTWQCT*LLSGGR
Trigger: CCTGCCGCCACTCAGAAGCCAGGTACATTGCCAGGT...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGCAGCTTGCAGTGCTCTaGGAGACGTTCCAGGCCATG +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRQLAVL*ETFQAM
Trigger: CATGGCCTGGAACGTCTCCCAGAGCACTGCAAGCTG...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGATGGGGGAGCTGCAGTTaGAGACAGGACTGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRWGSCS*RQDCSQ
Trigger: CTGAGAACAGTCCTGTCTTCAACTGCAGCTCCCCCA...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGACGCTTTGGGAATCCTaGTGGGGAGATGTCCATGGG +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGETLWES*WGDVHG
Trigger: CCCATGGACATCTCCCCATCAGGATTCCCAAAGCGT...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGATGCGCTTGCGCGTGGTaGGTACTTGGAATGGTTGGA +
Preference number: 4 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRCACAW*VLGMVG
Trigger: TCCAACCATTCCAAGTACTCACCACGCGCAAGCGCA...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGTGCGCTTGCGCGTGGTaGGTACTTGGAATGGTTGGA +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQCACAW*VLGMVG
Trigger: TCCAACCATTCCAAGTACTCACCACGCGCAAGCGCA...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGTCTGGACTTTGGGGGTaGCAGGGGCTTCATCTTCGT +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGESGLWG*QGLHLR
Trigger: ACGAAGATGAAGCCCCTGGCACCCCCAAAGTCCAGA...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGGTGGCCTGCTCTGGCTaGTTGTCTTTACGGACACGA +
Preference number: 4 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRVACSG*LSLRTR
Trigger: TCGTGTCCGTAAAGACAAGCAGCCAGAGCAGGCCAC...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGGTGGCCTGCTCTGGCTaGTTGTCTTTACGGACACGA +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGEVACSG*LSLRTR
Trigger: TCGTGTCCGTAAAGACAAGCAGCCAGAGCAGGCCAC...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCACAGGCTTCTGGACTTTaGGGGTGCCAGGGGCTTCAT +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPQASGL*GCQGLH
Trigger: ATGAAGCCCCTGGCACCCCCAAAGTCCAGAAGCCTG...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGGACATGTGTCAGGGCTaGGAGGAGAGCTCTGTTCAG +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGEDMCQG*EESSVQ
Trigger: CTGAACAGAGCTCTCCTCCCAGCCCTGACACATGTC...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGTACCTGGCTTCTGAGTaGCGGCAGGCAACAAAAAGG +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEYLASE*RQATKR
Trigger: CCTTTTTGTTGCCTGCCGCCACTCAGAAGCCAGGTA...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGCCCGCTTAGGGACCTaGCAATGTACCTGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPARLGT*QCTWLL
Trigger: CAGAAGCCAGGTACATTGCCAGGTCCCTAAGCGGGC...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGTTTAAGAGGGACCCCTaGGCTCAGCTTGCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRFKRDP*AQLAVL
Trigger: GAGCACTGCAAGCTGAGCCCAGGGGTCCCTCTTAAA...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGATTTAAGAGGGACCCCTaGGCTCAGCTTGCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRFKRDP*AQLAVL
Trigger: GAGCACTGCAAGCTGAGCCCAGGGGTCCCTCTTAAA...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGGGGATGAGCCAGCATTaGTTTAAGAGGGACCCCTGG +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRGMSQH*FKRDPW
Trigger: CCAGGGGTCCCTCTTAAACCAATGCTGGCTCATCCC...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGGGATGAGCCAGCATTaGTTTAAGAGGGACCCCTGG +
Preference number: 4 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRGMSQH*FKRDPW
Trigger: CCAGGGGTCCCTCTTAAACCAATGCTGGCTCATCCC...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGCTCCCACACAATGCTTaGGTCCAGCCAATGGTCTGG +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRLPHNA*VQPMVW
Trigger: CCAGACCATTGGCTGGACCCAAGCATTGTGTGGGAG...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGGGTAGTGGCCTGCTCTaGCTGCTTGTCTTTACGGAC +
Preference number: 4 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRGSGLL*LLVFTD
Trigger: GTCCGTAAAGACAAGCAGCCAGAGCAGGCCACTACC...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGGTAGTGGCCTGCTCTaGCTGCTTGTCTTTACGGAC +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQGSGLL*LLVFTD
Trigger: GTCCGTAAAGACAAGCAGCCAGAGCAGGCCACTACC...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGCTCTGTTCAGAGTCTaGCACAGGCTTCTGGACTTT +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEALFRV*HRLLDF
Trigger: AAAGTCCAGAAGCCTGTGTCAGACTCTGAACAGAGC...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAACGCTTTGGGAATCCTaGTGGGGAGATGTCCATGGG +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPTLWES*WGDVHG
Trigger: CCCATGGACATCTCCCCATCAGGATTCCCAAAGCGT...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGCTCTGTTCCTCTTCCTaGGGCTTCAGTTTCACTCCT +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQELCSSS*GFSFTP
Trigger: AGGAGTGAAACTGAAGCCTCAGGAAGAGGAACAGAG...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACGAGGTGGAGGCAGCATaGGTCTCTGAGTGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHEVEAA*VSECCG
Trigger: GCCGCAGCACTCAGAGACTCATGCTGCCTCCACCTC...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAATGTACCTGGCTTCTaGGTGGCGGCAGGCAACAAA +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRNVPGF*VAAGNK
Trigger: TTTGTTGCCTGCCGCCACTCAGAAGCCAGGTACATT...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGAGTCCTTCTTCAGCTTaGGCCAGTTGTGTGACCTCT +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQESPSSA*ASCVTS
Trigger: AGAGGTCACACAACTGGCTCAAGCTGAAGAAGGACT...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGTCACCTCCCACACAATaGTTGGGTCCAGCCAATGGT +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRSPPTQ*LGPANG
Trigger: ACCATTGGCTGGACCCAAGCATTGTGTGGGAGGTGA...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGTCACAGCTCAGAACCTaGGCTACCTTCCTTCCTGTC +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRSQLRT*ATFLPV
Trigger: GACAGGAAGGAAGGTAGCCCAGGTTCTGAGCTGTGA...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCACTTGAATTGTCCGTTTaGGGAGCTGCTTCCGCGCAG +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPLELSV*GAASAQ
Trigger: CTGCGCGGAAGCAGCTCCCCAAACGGACAATTCAAG...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGATCCAGGGTTCCCTTaGTCTCTTCCTTCCTTAGAG +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEDPGFP*SLPSLE
Trigger: CTCTAAGGAAGGAAGAGACCAAGGGAACCCTGGATC...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGTACCTGGCTTCTGAGTaGCGGCAGGCAACAAAAAGG +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGEYLASE*RQATKR
Trigger: CCTTTTTGTTGCCTGCCGCCACTCAGAAGCCAGGTA...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCTCTGTTCAGAGTCTaGCACAGGCTTCTGGACTTT +
Preference number: 4 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRALFRV*HRLLDF
Trigger: AAAGTCCAGAAGCCTGTGTCAGACTCTGAACAGAGC...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGCTCTGTTCCTCTTCCTaGGGCTTCAGTTTCACTCCT +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQLCSSS*GFSFTP
Trigger: AGGAGTGAAACTGAAGCCTCAGGAAGAGGAACAGAG...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACCCTGGGCAACGGCCTTaGGGAGGACACCATCACCAA +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHPGQRP*GGHHHQ
Trigger: TTGGTGATGGTGTCCTCCTCAAGGCCGTTGCCCAGG...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCTTCCTGGTTCCTGCTaGAGATCTTCACTTCTCCAC +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGELPGSC*RSSLLH
Trigger: GTGGAGAAGTGAAGATCTTCAGCAGGAACCAGGAAG...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGTCCTTCTTCAGCTTaGGCCAGTTGTGTGACCTCT +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRSPSSA*ASCVTS
Trigger: AGAGGTCACACAACTGGCTCAAGCTGAAGAAGGACT...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGTACGTCTTCAGCCTCTaGGAGGCTTTCTTTTGGGGT +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRYVFSL*EAFFWG
Trigger: ACCCCAAAAGAAAGCCTCGCAGAGGCTGAAGACGTA...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGTGGAATGGTTGGATCTaGTTCTTTTCCCGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRWNGWI*FFSRSQ
Trigger: CTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCA...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAAAGAACTCAGCAATCTaGTCGGTGTCCTTGGTGTCC +
Preference number: 4 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRKNSAI*SVSLVS
Trigger: GGACACCAAGGACACCGAGCAGATTGCTGAGTTCTT...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGAAGAACTCAGCAATCTaGTCGGTGTCCTTGGTGTCC +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGEKNSAI*SVSLVS
Trigger: GGACACCAAGGACACCGAGCAGATTGCTGAGTTCTT...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGAGTCCTTCACTGACTaGTCCAAGAACTCAGCAATC +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEESFTD*SKNSAI
Trigger: GATTGCTGAGTTCTTGGAGCAGTCAGTGAAGGACTC...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCATCACCTCCCACACAATaGTTGGGTCCAGCCAATGGT +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPSPPTQ*LGPANG
Trigger: ACCATTGGCTGGACCCAAGCATTGTGTGGGAGGTGA...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCATCCTGTCCTCTTCACTaGAGAATCACTCTCGGGCAC +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPSCPLH*RITLGH
Trigger: GTGCCCGAGAGTGATTCTCCAGTGAAGAGGACAGGA...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGGATCCAGGGTTCCCTTaGTCTCTTCCTTCCTTAGAG +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRDPGFP*SLPSLE
Trigger: CTCTAAGGAAGGAAGAGACCAAGGGAACCCTGGATC...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGAGAAAAGGGACCTTCTaGCCATGTTTCCAGCAGGCA +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQRKGTF*PCFQQA
Trigger: TGCCTGCTGGAAACATGGCCAGAAGGTCCCTTTTCT...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAAAAGGGACCTTCTaGCCATGTTTCCAGCAGGCA +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRRKGTF*PCFQQA
Trigger: TGCCTGCTGGAAACATGGCCAGAAGGTCCCTTTTCT...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACAACAGGGAGCAAGTCTaGAGGGGACAGGGCCACCAC +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHNREQV*RGQGHH
Trigger: GTGGTGGCCCTGTCCCCTCCAGACTTGCTCCCTGTT...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACCTACCTCAGCCCGGATaGACTCCAGCTGACGACCTG +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHLPQPG*TPADDL
Trigger: CAGGTCGTCAGCTGGAGTCCATCCGGGCTGAGGTAG...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGTCCAGAAATAGTAAGTaGAGGTGGAGGCAGCATGAG +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQESRNSK*RWRQHE
Trigger: CTCATGCTGCCTCCACCTCCACTTACTATTTCTGGA...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACGTGAGGCTCACAGCCTaGGCAAGAGCAGCCAGTACC +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHVRLTA*ARAAST
Trigger: GGTACTGGCTGCTCTTGCCCAGGCTGTGAGCCTCAC...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGACGCGTGGTGAGTACTTaGAATGGTTGGATCTGCTTC +
Preference number: 4 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRRVVST*NGWICF
Trigger: GAAGCAGATCCAACCATTCCAAGTACTCACCACGCG...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACGCTCAGAGGGGACTATaGGCTGGTCCCCCTCCTTTT +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHAQRGL*AGPPPF
Trigger: AAAAGGAGGGGGACCAGCTCATAGTCCCCTCTGAGC...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCACTTCCTGGTTCCTGCTaGAGATCTTCACTTCTCCAC +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPLPGSC*RSSLLH
Trigger: GTGGAGAAGTGAAGATCTTCAGCAGGAACCAGGAAG...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAAGCTTGCATATAGCCTaGAGCTCTTCACTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRSLHIA*SSSLSS
Trigger: TGAGGAGAGTGAAGAGCTTCAGGCTATATGCAAGCT...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGACCTCACAGAAGGTCTaGTTCAAGATCATGCCTTGT +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQETSQKV*FKIMPC
Trigger: ACAAGGCATGATCTTGAAGCAGACCTTCTGTGAGGT...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGTTACTGGTAGTGGCCTaGTCTGGCTGCTTGTCTTTA +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQLLVVA*SGCLSL
Trigger: TAAAGACAAGCAGCCAGAGCAGGCCACTACCAGTAA...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACAACAGGGAGCAAGTCTaGAGGGGACAGGGCCACCAC +
Preference number: 4 (lower is better)
Translates to: KAFQPQDLTPVTPHTPINNREQV*RGQGHH
Trigger: GTGGTGGCCCTGTCCCCTCCAGACTTGCTCCCTGTT...GTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGAATAGTAAGTGGAGGTaGAGGCAGCATGAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGENSKWR*RQHESL
Trigger: CAGAGACTCATGCTGCCTCCACCTCCACTTACTATT...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGCCTGTGTTGTCTTCCTaGTTCCTGCTGAAGATCTTC +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQPVLSS*FLLKIF
Trigger: GAAGATCTTCAGCAGGAACCAGGAAGACAACACAGG...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACTGGGGGAGCTGCAGTTaGAGACAGGACTGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHWGSCS*RQDCSQ
Trigger: CTGAGAACAGTCCTGTCTTCAACTGCAGCTCCCCCA...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCACTTGAGCCAGTTGTGTaGCCTCTTGGCAATCTCATA +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPLEPVV*PLGNLI
Trigger: TATGAGATTGCCAAGAGGTCACACAACTGGCTCAAG...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp AAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACCCAGCTCCTCATCGCTaGATCCAGTTCCCAGCTTGC +
Preference number: 4 (lower is better)
Translates to: KAFQPQDLTPVTPHTPINPAPHR*IQFPAC
Trigger: GCAAGCTGGGAACTGGATTCAGCGATGAGGAGCTGG...GTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACTCTGGACTTTGGGGGTaGCAGGGGCTTCATCTTCGT +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHSGLWG*QGLHLR
Trigger: ACGAAGATGAAGCCCCTGGCACCCCCAAAGTCCAGA...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGTCTGCTTCAAGATCATaGCTTGTTCTTCCAACCACA +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQESASRS*LVLPTT
Trigger: TGTGGTTGGAAGAACAAGGCATGATCTTGAAGCAGA...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGACCTCACAGAAGGTCTaGTTCAAGATCATGCCTTGT +
Preference number: 4 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRTSQKV*FKIMPC
Trigger: ACAAGGCATGATCTTGAAGCAGACCTTCTGTGAGGT...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACGACATGTGTCAGGGCTaGGAGGAGAGCTCTGTTCAG +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHDMCQG*EESSVQ
Trigger: CTGAACAGAGCTCTCCTCCCAGCCCTGACACATGTC...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCTGGCAATGTACCTaGCTTCTGAGTGGCGGCAGG +
Preference number: 4 (lower is better)
Translates to: KAFQPQDLTPVTPHTPINTWQCT*LLSGGR
Trigger: CCTGCCGCCACTCAGAAGCCAGGTACATTGCCAGGT...GTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCACCTGTGTTGTCTTCCTaGTTCCTGCTGAAGATCTTC +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPPVLSS*FLLKIF
Trigger: GAAGATCTTCAGCAGGAACCAGGAAGACAACACAGG...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGTACTTGGAATGGTTaGATCTGCTTCTTTTCCCGG +
Preference number: 4 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRSTWNG*ICFFSR
Trigger: CCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACT...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGTGGCAATCTCATAAGTaGCATCAACATCCAAGGTCT +
Preference number: 4 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEWQSHK*HQHPRS
Trigger: AGACCTTGGATGTTGATGCCACTTATGAGATTGCCA...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACCTCCCACACAATGCTTaGGTCCAGCCAATGGTCTGG +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHLPHNA*VQPMVW
Trigger: CCAGACCATTGGCTGGACCCAAGCATTGTGTGGGAG...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGCTGACTCTTCTTGTTTaGCTTCAGTTTTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQLTLLV*LQFSLL
Trigger: CAGCAGTGAAAACTGAAGTCAAACAAGAAGAGTCAG...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp GAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCTGGGCAACGGCCTTaGGGAGGACACCATCACCAA +
Preference number: 4 (lower is better)
Translates to: EENKAFQPQDLTPVTPHTPGQRP*GGHHHQ
Trigger: TTGGTGATGGTGTCCTCCTCAAGGCCGTTGCCCAGG...TGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACAATGTACCTGGCTTCTaGGTGGCGGCAGGCAACAAA +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHNVPGF*VAAGNK
Trigger: TTTGTTGCCTGCCGCCACTCAGAAGCCAGGTACATT...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACAATGTACCTGGCTTCTaGGTGGCGGCAGGCAACAAA +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHNVPGF*VAAGNK
Trigger: TTTGTTGCCTGCCGCCACTCAGAAGCCAGGTACATT...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGCTTCAGTTTCACTCCTaGCTTACACACTGGAATGTT +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRLQFHS*LTHWNV
Trigger: AACATTCCAGTGTGTAAGGCAGGAGTGAAACTGAAG...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGCTTCAGTTTCACTCCTaGCTTACACACTGGAATGTT +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQLQFHS*LTHWNV
Trigger: AACATTCCAGTGTGTAAGGCAGGAGTGAAACTGAAG...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGATCTGCTTCAAGATCATaGCTTGTTCTTCCAACCACA +
Preference number: 4 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRSASRS*LVLPTT
Trigger: TGTGGTTGGAAGAACAAGGCATGATCTTGAAGCAGA...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGTCCTGCCTTACACACTaGAATGTTCTCTGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRSCLTH*NVLCLC
Trigger: ACAAAGACAGAGAACATTCCAGTGTGTAAGGCAGGA...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGGGTGAGTACTTGGAATaGTTGGATCTGCTTCTTTTC +
Preference number: 4 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRGEYLE*LDLLLF
Trigger: GAAAAGAAGCAGATCCAACCATTCCAAGTACTCACC...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGGGTGAGTACTTGGAATaGTTGGATCTGCTTCTTTTC +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGEGEYLE*LDLLLF
Trigger: GAAAAGAAGCAGATCCAACCATTCCAAGTACTCACC...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGATGGCAATCTCATAAGTaGCATCAACATCCAAGGTCT +
Preference number: 4 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRWQSHK*HQHPRS
Trigger: AGACCTTGGATGTTGATGCCACTTATGAGATTGCCA...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGAGTTGTGTGACCTCTTaGCAATCTCATAAGTGGCAT +
Preference number: 4 (lower is better)
Translates to: HQSNSAHVLATSTPGPGESCVTS*QSHKWH
Trigger: ATGCCACTTATGAGATTGCCAAGAGGTCACACAACT...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCTCTGTTCCTCTTCCTaGGGCTTCAGTTTCACTCCT +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHLCSSS*GFSFTP
Trigger: AGGAGTGAAACTGAAGCCTCAGGAAGAGGAACAGAG...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACTGGAATGGTTGGATCTaGTTCTTTTCCCGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHWNGWI*FFSRSQ
Trigger: CTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCA...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACAAGAACTCAGCAATCTaGTCGGTGTCCTTGGTGTCC +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHKNSAI*SVSLVS
Trigger: GGACACCAAGGACACCGAGCAGATTGCTGAGTTCTT...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp AAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACTCACCTCCCACACAATaGTTGGGTCCAGCCAATGGT +
Preference number: 4 (lower is better)
Translates to: KAFQPQDLTPVTPHTPINSPPTQ*LGPANG
Trigger: ACCATTGGCTGGACCCAAGCATTGTGTGGGAGGTGA...GTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACTCCTGTCCTCTTCACTaGAGAATCACTCTCGGGCAC +
Preference number: 4 (lower is better)
Translates to: KAFQPQDLTPVTPHTPINSCPLH*RITLGH
Trigger: GTGCCCGAGAGTGATTCTCCAGTGAAGAGGACAGGA...GTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCATCCTGCCTTACACACTaGAATGTTCTCTGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPSCLTH*NVLCLC
Trigger: ACAAAGACAGAGAACATTCCAGTGTGTAAGGCAGGA...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACGATCCAGGGTTCCCTTaGTCTCTTCCTTCCTTAGAG +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHDPGFP*SLPSLE
Trigger: CTCTAAGGAAGGAAGAGACCAAGGGAACCCTGGATC...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGAGCAGGCATCTTCAATaGGATGATAGTTATTCTTGG +
Preference number: 4 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQSRHLQ*DDSYSW
Trigger: CCAAGAATAACTATCATCCCATTGAAGATGCCTGCT...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp GAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACAGCCCGCTTAGGGACCTaGCAATGTACCTGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: EENKAFQPQDLTPVTPHTARLGT*QCTWLL
Trigger: CAGAAGCCAGGTACATTGCCAGGTCCCTAAGCGGGC...TGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCGCGTGGTGAGTACTTaGAATGGTTGGATCTGCTTC +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHRVVST*NGWICF
Trigger: GAAGCAGATCCAACCATTCCAAGTACTCACCACGCG...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp GAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACAACGCTTTGGGAATCCTaGTGGGGAGATGTCCATGGG +
Preference number: 4 (lower is better)
Translates to: EENKAFQPQDLTPVTPHTTLWES*WGDVHG
Trigger: CCCATGGACATCTCCCCATCAGGATTCCCAAAGCGT...TGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACCTTGAGCCAGTTGTGTaGCCTCTTGGCAATCTCATA +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHLEPVV*PLGNLI
Trigger: TATGAGATTGCCAAGAGGTCACACAACTGGCTCAAG...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCTTGAGCCAGTTGTGTaGCCTCTTGGCAATCTCATA +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHLEPVV*PLGNLI
Trigger: TATGAGATTGCCAAGAGGTCACACAACTGGCTCAAG...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACGTCGGAGTCCAAGTCTaGGCTTTGTTGGTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHVGVQV*ALLVLN
Trigger: ATTCAGAACCAACAAAGCTCAGACTTGGACTCCGAC...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACGTCGGAGTCCAAGTCTaGGCTTTGTTGGTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHVGVQV*ALLVLN
Trigger: ATTCAGAACCAACAAAGCTCAGACTTGGACTCCGAC...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACGAGTCCTTCACTGACTaGTCCAAGAACTCAGCAATC +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHESFTD*SKNSAI
Trigger: GATTGCTGAGTTCTTGGAGCAGTCAGTGAAGGACTC...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACACCTCACAGAAGGTCTaGTTCAAGATCATGCCTTGT +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHTSQKV*FKIMPC
Trigger: ACAAGGCATGATCTTGAAGCAGACCTTCTGTGAGGT...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACAATAGTAAGTGGAGGTaGAGGCAGCATGAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: KAFQPQDLTPVTPHTPINNSKWR*RQHESL
Trigger: CAGAGACTCATGCTGCCTCCACCTCCACTTACTATT...GTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp GAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACATACCTGGCTTCTGAGTaGCGGCAGGCAACAAAAAGG +
Preference number: 4 (lower is better)
Translates to: EENKAFQPQDLTPVTPHTYLASE*RQATKR
Trigger: CCTTTTTGTTGCCTGCCGCCACTCAGAAGCCAGGTA...TGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCTTGGGTCCAGCCAATaGTCTGGGGCCACTGCCCCA +
Preference number: 4 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTLGSSQ*SGATAP
Trigger: TGGGGCAGTGGCCCCAGACCATTGGCTGGACCCAAG...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCTGGGCAACGGCCTTaGGGAGGACACCATCACCAA +
Preference number: 4 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTPGQRP*GGHHHQ
Trigger: TTGGTGATGGTGTCCTCCTCAAGGCCGTTGCCCAGG...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTGGCAGCATGAGTCTCTaGGTGCTGCGGCTGTTCTCG +
Preference number: 4 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTGSMSL*VLRLFS
Trigger: CGAGAACAGCCGCAGCACTCAGAGACTCATGCTGCC...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCGAGGTGGAGGCAGCATaGGTCTCTGAGTGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLEVEAA*VSECCG
Trigger: GCCGCAGCACTCAGAGACTCATGCTGCCTCCACCTC...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTTGGCCAGGGGGTGTaGGGCTCACAGCCTGGGCAA +
Preference number: 4 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISLGQGV*GSQPGQ
Trigger: TTGCCCAGGCTGTGAGCCTCACACCCCCTGGCCAAG...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACATTTATATTCACAGGTaGAGTCGACCTCCTCAAAGC +
Preference number: 4 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHIYIHR*SRPPQS
Trigger: GCTTTGAGGAGGTCGACTTCACCTGTGAATATAAAT...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp GAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACAAGTCCTTCTTCAGCTTaGGCCAGTTGTGTGACCTCT +
Preference number: 4 (lower is better)
Translates to: EENKAFQPQDLTPVTPHTSPSSA*ASCVTS
Trigger: AGAGGTCACACAACTGGCTCAAGCTGAAGAAGGACT...TGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCTTCAGTTTCACTCCTaGCTTACACACTGGAATGTT +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHLQFHS*LTHWNV
Trigger: AACATTCCAGTGTGTAAGGCAGGAGTGAAACTGAAG...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACTCCTGCCTTACACACTaGAATGTTCTCTGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHSCLTH*NVLCLC
Trigger: ACAAAGACAGAGAACATTCCAGTGTGTAAGGCAGGA...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTAACAGGGAGCAAGTCTaGAGGGGACAGGGCCACCAC +
Preference number: 4 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTNREQV*RGQGHH
Trigger: GTGGTGGCCCTGTCCCCTCCAGACTTGCTCCCTGTT...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTGTGAGGCTCACAGCCTaGGCAAGAGCAGCCAGTACC +
Preference number: 4 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTVRLTA*ARAAST
Trigger: GGTACTGGCTGCTCTTGCCCAGGCTGTGAGCCTCAC...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCAGGGCCTGCAGGCTCTaGTGGTGTTCCTCCAGCTCC +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLRACRL*WCSSSS
Trigger: GGAGCTGGAGGAACACCACCAGAGCCTGCAGGCCCT...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp AAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACCTGACTCTTCTTGTTTaGCTTCAGTTTTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: KAFQPQDLTPVTPHTPINLTLLV*LQFSLL
Trigger: CAGCAGTGAAAACTGAAGTCAAACAAGAAGAGTCAG...GTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp AAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACATTTATATTCACAGGTaGAGTCGACCTCCTCAAAGC +
Preference number: 4 (lower is better)
Translates to: KAFQPQDLTPVTPHTPINIYIHR*SRPPQS
Trigger: GCTTTGAGGAGGTCGACTTCACCTGTGAATATAAAT...GTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp AAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACTCTGCTTCAAGATCATaGCTTGTTCTTCCAACCACA +
Preference number: 4 (lower is better)
Translates to: KAFQPQDLTPVTPHTPINSASRS*LVLPTT
Trigger: TGTGGTTGGAAGAACAAGGCATGATCTTGAAGCAGA...GTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCGGGCTCAGCTTGCAGTaGTCTGGGAGACGTTCCAGG +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLGLSLQ*SGRRSR
Trigger: CCTGGAACGTCTCCCAGAGCACTGCAAGCTGAGCCC...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp GAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACAGAGTCCTTCACTGACTaGTCCAAGAACTCAGCAATC +
Preference number: 4 (lower is better)
Translates to: EENKAFQPQDLTPVTPHTESFTD*SKNSAI
Trigger: GATTGCTGAGTTCTTGGAGCAGTCAGTGAAGGACTC...TGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp GAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACATTACTGGTAGTGGCCTaGTCTGGCTGCTTGTCTTTA +
Preference number: 4 (lower is better)
Translates to: EENKAFQPQDLTPVTPHTLLVVA*SGCLSL
Trigger: TAAAGACAAGCAGCCAGAGCAGGCCACTACCAGTAA...TGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCAGGCTTCTGGACTTTaGGGGTGCCAGGGGCTTCAT +
Preference number: 4 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTQASGL*GCQGLH
Trigger: ATGAAGCCCCTGGCACCCCCAAAGTCCAGAAGCCTG...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTTCTGACACAGGCTTCTaGACTTTGGGGGTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTSDTGF*TLGVPG
Trigger: CCCTGGCACCCCCAAAGTCCAGAAGCCTGTGTCAGA...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACAGCAGGCATCTTCAATaGGATGATAGTTATTCTTGG +
Preference number: 4 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHSRHLQ*DDSYSW
Trigger: CCAAGAATAACTATCATCCCATTGAAGATGCCTGCT...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGAGGCTCACAGCCTaGGCAAGAGCAGCCAGTACC +
Preference number: 4 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPVRLTA*ARAAST
Trigger: GGTACTGGCTGCTCTTGCCCAGGCTGTGAGCCTCAC...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGGGGTTCCTTCTCTCTaGTGCTGCTGGGTGTCTCCT +
Preference number: 4 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPGVPSL*CCWVSP
Trigger: AGGAGACACCCAGCAGCATCAGAGAGAAGGAACCCC...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCAGGCAGCATGAGTCTCTaGGTGCTGCGGCTGTTCTCG +
Preference number: 4 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISGSMSL*VLRLFS
Trigger: CGAGAACAGCCGCAGCACTCAGAGACTCATGCTGCC...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTCAGGCTTCTGGACTTTaGGGGTGCCAGGGGCTTCAT +
Preference number: 4 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPQASGL*GCQGLH
Trigger: ATGAAGCCCCTGGCACCCCCAAAGTCCAGAAGCCTG...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTTCTGACACAGGCTTCTaGACTTTGGGGGTGCCAGGG +
Preference number: 4 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPSDTGF*TLGVPG
Trigger: CCCTGGCACCCCCAAAGTCCAGAAGCCTGTGTCAGA...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCTTGAATTGTCCGTTTaGGGAGCTGCTTCCGCGCAG +
Preference number: 4 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTLELSV*GAASAQ
Trigger: CTGCGCGGAAGCAGCTCCCCAAACGGACAATTCAAG...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTACCTGGCAATGTACCTaGCTTCTGAGTGGCGGCAGG +
Preference number: 4 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPTWQCT*LLSGGR
Trigger: CCTGCCGCCACTCAGAAGCCAGGTACATTGCCAGGT...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTCAGCTTGCAGTGCTCTaGGAGACGTTCCAGGCCATG +
Preference number: 4 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPQLAVL*ETFQAM
Trigger: CATGGCCTGGAACGTCTCCCAGAGCACTGCAAGCTG...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp GAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACAAGTACTTGGAATGGTTaGATCTGCTTCTTTTCCCGG +
Preference number: 4 (lower is better)
Translates to: EENKAFQPQDLTPVTPHTSTWNG*ICFFSR
Trigger: CCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACT...TGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCTGGGGGAGCTGCAGTTaGAGACAGGACTGTTCTCAG +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLWGSCS*RQDCSQ
Trigger: CTGAGAACAGTCCTGTCTTCAACTGCAGCTCCCCCA...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCGGAGCGCAGCAGGTTaGTCAATGTCTCCACCATCT +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLRSAAG*SMSPPS
Trigger: AGATGGTGGAGACATTGAGCAACCTGCTGCGCTCCG...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTTGAATTGTCCGTTTaGGGAGCTGCTTCCGCGCAG +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLLELSV*GAASAQ
Trigger: CTGCGCGGAAGCAGCTCCCCAAACGGACAATTCAAG...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCTTTAAGAGGGACCCCTaGGCTCAGCTTGCAGTGCTC +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLFKRDP*AQLAVL
Trigger: GAGCACTGCAAGCTGAGCCCAGGGGTCCCTCTTAAA...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGGGATGAGCCAGCATTaGTTTAAGAGGGACCCCTGG +
Preference number: 4 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPGMSQH*FKRDPW
Trigger: CCAGGGGTCCCTCTTAAACCAATGCTGGCTCATCCC...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTCTCCCACACAATGCTTaGGTCCAGCCAATGGTCTGG +
Preference number: 4 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPLPHNA*VQPMVW
Trigger: CCAGACCATTGGCTGGACCCAAGCATTGTGTGGGAG...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCATCTGGACTTTGGGGGTaGCAGGGGCTTCATCTTCGT +
Preference number: 4 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISSGLWG*QGLHLR
Trigger: ACGAAGATGAAGCCCCTGGCACCCCCAAAGTCCAGA...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCTCCTGTCCTCTTCACTaGAGAATCACTCTCGGGCAC +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLSCPLH*RITLGH
Trigger: GTGCCCGAGAGTGATTCTCCAGTGAAGAGGACAGGA...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCTCACAGCTCAGAACCTaGGCTACCTTCCTTCCTGTC +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLSQLRT*ATFLPV
Trigger: GACAGGAAGGAAGGTAGCCCAGGTTCTGAGCTGTGA...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCGCGTGGTGAGTACTTaGAATGGTTGGATCTGCTTC +
Preference number: 4 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTRVVST*NGWICF
Trigger: GAAGCAGATCCAACCATTCCAAGTACTCACCACGCG...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCAGGTAGTGGCCTGCTCTaGCTGCTTGTCTTTACGGAC +
Preference number: 4 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISGSGLL*LLVFTD
Trigger: GTCCGTAAAGACAAGCAGCCAGAGCAGGCCACTACC...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCAGCTTGCATATAGCCTaGAGCTCTTCACTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLSLHIA*SSSLSS
Trigger: TGAGGAGAGTGAAGAGCTTCAGGCTATATGCAAGCT...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCGTCGGAGTCCAAGTCTaGGCTTTGTTGGTTCTGAAT +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLVGVQV*ALLVLN
Trigger: ATTCAGAACCAACAAAGCTCAGACTTGGACTCCGAC...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCATACGTCTTCAGCCTCTaGGAGGCTTTCTTTTGGGGT +
Preference number: 4 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISYVFSL*EAFFWG
Trigger: ACCCCAAAAGAAAGCCTCGCAGAGGCTGAAGACGTA...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCATGGAATGGTTGGATCTaGTTCTTTTCCCGGTCCCAG +
Preference number: 4 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISWNGWI*FFSRSQ
Trigger: CTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCA...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR GCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCTTACTGGTAGTGGCCTaGTCTGGCTGCTTGTCTTTA +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLLLVVA*SGCLSL
Trigger: TAAAGACAAGCAGCCAGAGCAGGCCACTACCAGTAA...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCAAGAAAAGGGACCTTCTaGCCATGTTTCCAGCAGGCA +
Preference number: 4 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISRKGTF*PCFQQA
Trigger: TGCCTGCTGGAAACATGGCCAGAAGGTCCCTTTTCT...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTAATAGTAAGTGGAGGTaGAGGCAGCATGAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPNSKWR*RQHESL
Trigger: CAGAGACTCATGCTGCCTCCACCTCCACTTACTATT...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTTCCAGAAATAGTAAGTaGAGGTGGAGGCAGCATGAG +
Preference number: 4 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPSRNSK*RWRQHE
Trigger: CTCATGCTGCCTCCACCTCCACTTACTATTTCTGGA...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCCTGTGTTGTCTTCCTaGTTCCTGCTGAAGATCTTC +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLPVLSS*FLLKIF
Trigger: GAAGATCTTCAGCAGGAACCAGGAAGACAACACAGG...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCAAGCTTGCATATAGCCTaGAGCTCTTCACTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISSLHIA*SSSLSS
Trigger: TGAGGAGAGTGAAGAGCTTCAGGCTATATGCAAGCT...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTAGTTGTGTGACCTCTTaGCAATCTCATAAGTGGCAT +
Preference number: 4 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTSCVTS*QSHKWH
Trigger: ATGCCACTTATGAGATTGCCAAGAGGTCACACAACT...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGACTCTTCTTGTTTaGCTTCAGTTTTCACTGCTG +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLLTLLV*LQFSLL
Trigger: CAGCAGTGAAAACTGAAGTCAAACAAGAAGAGTCAG...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCGGTGAGTACTTGGAATaGTTGGATCTGCTTCTTTTC +
Preference number: 4 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLGEYLE*LDLLLF
Trigger: GAAAAGAAGCAGATCCAACCATTCCAAGTACTCACC...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTTGGCAATCTCATAAGTaGCATCAACATCCAAGGTCT +
Preference number: 4 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPWQSHK*HQHPRS
Trigger: AGACCTTGGATGTTGATGCCACTTATGAGATTGCCA...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR TCA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCAATTTATATTCACAGGTaGAGTCGACCTCCTCAAAGC +
Preference number: 4 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISIYIHR*SRPPQS
Trigger: GCTTTGAGGAGGTCGACTTCACCTGTGAATATAAAT...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTAGCAGGCATCTTCAATaGGATGATAGTTATTCTTGG +
Preference number: 4 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPSRHLQ*DDSYSW
Trigger: CCAAGAATAACTATCATCCCATTGAAGATGCCTGCT...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CCA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCAAGTTGTGTGACCTCTTaGCAATCTCATAAGTGGCAT +
Preference number: 4 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISSCVTS*QSHKWH
Trigger: ATGCCACTTATGAGATTGCCAAGAGGTCACACAACT...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 90 bp GGGGGTGTGAGGCTCACAGCCTGGGCAAGAGCAGCCAGTACCGACTaGTCAGCTAGGCCAAGGCGCAGCCGCCCGCTTAGGGACCTGGCA +
Preference number: 5 (lower is better)
Translates to: GGVRLTAWARAASTD*SARPRRSRPLRDLA
Trigger: TGCCAGGTCCCTAAGCGGGCGGCTGCGCCTTGGCCTAGCTGAGCAGTCGGTACTGGCTGCTCTTGCCCAGGCTGTGAGCCTCACACCCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp ACCGCCGTGGGAAATTCTTGGCCAGGGGGTGTGAGGCTCACAGCCTaGGCAAGAGCAGCCAGTACCGACTGCTCAGCTAGGCCAAGGCGC +
Preference number: 5 (lower is better)
Translates to: TAVGNSWPGGVRLTA*ARAASTDCSARPRR
Trigger: GCGCCTTGGCCTAGCTGAGCAGTCGGTACTGGCTGCTCTTGCCCAGGCTGTGAGCCTCACACCCCCTGGCCAAGAATTTCCCACGGCGGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 90 bp CCCGGATGGACTCCAGCTGACGACCTGTGGCCTGGGCAACGGCCTTaGGGAGGACACCATCACCAACACCCAGCTCTAGTCCCTGCTGAG +
Preference number: 5 (lower is better)
Translates to: PGWTPADDLWPGQRP*GGHHHQHPALVPAE
Trigger: CTCAGCAGGGACTAGAGCTGGGTGTTGGTGATGGTGTCCTCCTCAAGGCCGTTGCCCAGGCCACAGGTCGTCAGCTGGAGTCCATCCGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 90 bp TCCCAGCATCCACCACCGCCGTGGGAAATTCTTGGCCAGGGGGTGTaGGGCTCACAGCCTGGGCAAGAGCAGCCAGTACCGACTGCTCAG +
Preference number: 5 (lower is better)
Translates to: SQHPPPPWEILGQGV*GSQPGQEQPVPTAQ
Trigger: CTGAGCAGTCGGTACTGGCTGCTCTTGCCCAGGCTGTGAGCCTCACACCCCCTGGCCAAGAATTTCCCACGGCGGTGGTGGATGCTGGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGCCTGGGCAACGGCCTaGAGGAGGACACCATCACCA +
Preference number: 5 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEAWATA*RRTPSP
Trigger: TGGTGATGGTGTCCTCCTCAAGGCCGTTGCCCAGGC...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp TGGCCCGAGGCGGTTGAGGCTGAGATAGAGAACAGGGAGCAAGTCTaGAGGGGACAGGGCCACCACGGAGCGCAGCAGGTTGCTCAATGT +
Preference number: 5 (lower is better)
Translates to: WPEAVEAEIENREQV*RGQGHHGAQQVAQC
Trigger: ACATTGAGCAACCTGCTGCGCTCCGTGGTGGCCCTGTCCCCTCCAGACTTGCTCCCTGTTCTCTATCTCAGCCTCAACCGCCTCGGGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCGCCGTGGGAAATTCTaGGCCAGGGGGTGTGAGGCT +
Preference number: 5 (lower is better)
Translates to: HQSNSAHVLATSTPGPGERRGKF*ARGCEA
Trigger: AGCCTCACACCCCCTGGCCAAGAATTTCCCACGGCG...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGCGCCGTGGGAAATTCTaGGCCAGGGGGTGTGAGGCT +
Preference number: 5 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQRRGKF*ARGCEA
Trigger: AGCCTCACACCCCCTGGCCAAGAATTTCCCACGGCG...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGACCCCTGGGCTCAGCTaGCAGTGCTCTGGGAGACGT +
Preference number: 5 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQTPGLS*QCSGRR
Trigger: ACGTCTCCCAGAGCACTGCAAGCTGAGCCCAGGGGT...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGACCCCTGGGCTCAGCTaGCAGTGCTCTGGGAGACGT +
Preference number: 5 (lower is better)
Translates to: HQSNSAHVLATSTPGPGETPGLS*QCSGRR
Trigger: ACGTCTCCCAGAGCACTGCAAGCTGAGCCCAGGGGT...CTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 90 bp AAGACAAACTCACCCTCTGTCTCCACGAAGTTCTCACGGAGCAGCTaGCGGCGTCGAGACAGGGGCTGGCGAACCAGGGACTCTCCGTTG +
Preference number: 5 (lower is better)
Translates to: KTNSPSVSTKFSRSS*RRRDRGWRTRDSPL
Trigger: CAACGGAGAGTCCCTGGTTCGCCAGCCCCTGTCTCGACGCCGGCAGCTGCTCCGTGAGAACTTCGTGGAGACAGAGGGTGAGTTTGTCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGACGGAGCGCAGCAGGTaGCTCAATGTCTCCACCATC +
Preference number: 5 (lower is better)
Translates to: SNSAHVLATSTPGPGEQETERSR*LNVSTI
Trigger: GATGGTGGAGACATTGAGCAACCTGCTGCGCTCCGT...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGCCTGGGCAACGGCCTaGAGGAGGACACCATCACCA +
Preference number: 5 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPAWATA*RRTPSP
Trigger: TGGTGATGGTGTCCTCCTCAAGGCCGTTGCCCAGGC...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGTCAACCTCCTTGCGCTaGCGCGTGGTGAGTACTTGG +
Preference number: 5 (lower is better)
Translates to: SNSAHVLATSTPGPGEQESTSLR*RVVSTW
Trigger: CCAAGTACTCACCACGCGCAAGCGCAAGGAGGTTGA...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp GACACCCCGAGTGGGATGAGCCAGCATTGGTTTAAGAGGGACCCCTaGGCTCAGCTTGCAGTGCTCTGGGAGACGTTCCAGGCCATGTTC +
Preference number: 5 (lower is better)
Translates to: DTPSGMSQHWFKRDP*AQLAVLWETFQAMF
Trigger: GAACATGGCCTGGAACGTCTCCCAGAGCACTGCAAGCTGAGCCCAGGGGTCCCTCTTAAACCAATGCTGGCTCATCCCACTCGGGGTGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGCTGACTCAGGGGACTTaGTGGGCTCAGAGGGGACTA +
Preference number: 5 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRLTQGT*WAQRGL
Trigger: TAGTCCCCTCTGAGCCCACAAAGTCCCCTGAGTCAG...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGACGGAGCGCAGCAGGTaGCTCAATGTCTCCACCATC +
Preference number: 5 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQTERSR*LNVSTI
Trigger: GATGGTGGAGACATTGAGCAACCTGCTGCGCTCCGT...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGCCTCCCACACAATGCTaGGGTCCAGCCAATGGTCTG +
Preference number: 5 (lower is better)
Translates to: QSNSAHVLATSTPGPGEQPPTQC*GPANGL
Trigger: CAGACCATTGGCTGGACCCAAGCATTGTGTGGGAGG...CTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGAGATCCCTTTTTCTTaGTCCACCAGGCCCCGTGCA +
Preference number: 5 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEEIPFS*STRPRA
Trigger: TGCACGGGGCCTGGTGGACAAAGAAAAAGGGATCTC...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCACTGACTCAGGGGACTTaGTGGGCTCAGAGGGGACTA +
Preference number: 5 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPLTQGT*WAQRGL
Trigger: TAGTCCCCTCTGAGCCCACAAAGTCCCCTGAGTCAG...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGGATCCAGGGTTCCCTaGGTCTCTTCCTTCCTTAGA +
Preference number: 5 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEGSRVP*VSSFLR
Trigger: TCTAAGGAAGGAAGAGACCAAGGGAACCCTGGATCC...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAACGGAGCGCAGCAGGTaGCTCAATGTCTCCACCATC +
Preference number: 5 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPTERSR*LNVSTI
Trigger: GATGGTGGAGACATTGAGCAACCTGCTGCGCTCCGT...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGGCGCGTGGTGAGTACTaGGAATGGTTGGATCTGCTT +
Preference number: 5 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEARGEY*EWLDLL
Trigger: AAGCAGATCCAACCATTCCAAGTACTCACCACGCGC...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 90 bp CTCAGGACATGTGTCAGGGCTGGGAGGAGAGCTCTGTTCAGAGTCTaGCACAGGCTTCTGGACTTTGGGGGTGCCAGGGGCTTCATCTTC +
Preference number: 5 (lower is better)
Translates to: LRTCVRAGRRALFRV*HRLLDFGGARGFIF
Trigger: GAAGATGAAGCCCCTGGCACCCCCAAAGTCCAGAAGCCTGTGTCAGACTCTGAACAGAGCTCTCCTCCCAGCCCTGACACATGTCCTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp GCATCAACCTCCTTGCGCTTGCGCGTGGTGAGTACTTGGAATGGTTaGATCTGCTTCTTTTCCCGGTCCCAGGCCACAGCCTCAGTGTCC +
Preference number: 5 (lower is better)
Translates to: ASTSLRLRVVSTWNG*ICFFSRSQATASVS
Trigger: GGACACTGAGGCTGTGGCCTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAGGTTGATGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAATGGGGGAGCTGCAGTaGAAGACAGGACTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRMGELQ*KTGLFS
Trigger: TGAGAACAGTCCTGTCTTCAACTGCAGCTCCCCCAT...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGGGATCCAGGGTTCCCTaGGTCTCTTCCTTCCTTAGA +
Preference number: 5 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRGSRVP*VSSFLR
Trigger: TCTAAGGAAGGAAGAGACCAAGGGAACCCTGGATCC...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 90 bp ACCTCCTTGCGCTTGCGCGTGGTGAGTACTTGGAATGGTTGGATCTaGTTCTTTTCCCGGTCCCAGGCCACAGCCTCAGTGTCCAGAATG +
Preference number: 5 (lower is better)
Translates to: TSLRLRVVSTWNGWI*FFSRSQATASVSRM
Trigger: CATTCTGGACACTGAGGCTGTGGCCTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp GTGCCAGGGGCTTCATCTTCGTCCTCCCCTTCACAGCTCAGAACCTaGGCTACCTTCCTTCCTGTCCTCTTCACTGGAGAATCACTCTCG +
Preference number: 5 (lower is better)
Translates to: VPGASSSSSPSQLRT*ATFLPVLFTGESLS
Trigger: CGAGAGTGATTCTCCAGTGAAGAGGACAGGAAGGAAGGTAGCCCAGGTTCTGAGCTGTGAAGGGGAGGACGAAGATGAAGCCCCTGGCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp CGCAGCCGCCCGCTTAGGGACCTGGCAATGTACCTGGCTTCTGAGTaGCGGCAGGCAACAAAAAGGCCCTTGATAATGTCCATCTTCTTG +
Preference number: 5 (lower is better)
Translates to: RSRPLRDLAMYLASE*RQATKRPLIMSIFL
Trigger: CAAGAAGATGGACATTATCAAGGGCCTTTTTGTTGCCTGCCGCCACTCAGAAGCCAGGTACATTGCCAGGTCCCTAAGCGGGCGGCTGCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp CGATGCATCAACCTCCTTGCGCTTGCGCGTGGTGAGTACTTGGAATaGTTGGATCTGCTTCTTTTCCCGGTCCCAGGCCACAGCCTCAGT +
Preference number: 5 (lower is better)
Translates to: RCINLLALARGEYLE*LDLLLFPVPGHSLS
Trigger: ACTGAGGCTGTGGCCTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAGGTTGATGCATCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp ATCTCCGATGCATCAACCTCCTTGCGCTTGCGCGTGGTGAGTACTTaGAATGGTTGGATCTGCTTCTTTTCCCGGTCCCAGGCCACAGCC +
Preference number: 5 (lower is better)
Translates to: ISDASTSLRLRVVST*NGWICFFSRSQATA
Trigger: GGCTGTGGCCTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAGGTTGATGCATCGGAGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGCATACAGACACACTaGCACCTGTATCTCCGATGC +
Preference number: 5 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRSIQTH*HLYLRC
Trigger: GCATCGGAGATACAGGTGCAAGTGTGTCTGTATGCT...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGATTCAGCTTGAGCCAGTaGTGTGACCTCTTGGCAATC +
Preference number: 5 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRFSLSQ*CDLLAI
Trigger: GATTGCCAAGAGGTCACACAACTGGCTCAAGCTGAA...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGTTCAGCTTGAGCCAGTaGTGTGACCTCTTGGCAATC +
Preference number: 5 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRFSLSQ*CDLLAI
Trigger: GATTGCCAAGAGGTCACACAACTGGCTCAAGCTGAA...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 90 bp GCACCTGTATCTCCGATGCATCAACCTCCTTGCGCTTGCGCGTGGTaGGTACTTGGAATGGTTGGATCTGCTTCTTTTCCCGGTCCCAGG +
Preference number: 5 (lower is better)
Translates to: APVSPMHQPPCACAW*VLGMVGSASFPGPR
Trigger: CCTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAGGTTGATGCATCGGAGATACAGGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGCTGCGAGGCTTTCTTTaGGGGTCTCTTCTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRLRGFL*GSLLLS
Trigger: AGAAAGAAGAAGAGACCCCAAAAGAAAGCCTCGCAG...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGATAATGTCCATCTTCTaGGCCATGGAAGCACTGCCA +
Preference number: 5 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRIMSIF*AMEALP
Trigger: TGGCAGTGCTTCCATGGCCAAGAAGATGGACATTAT...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAATAATGTCCATCTTCTaGGCCATGGAAGCACTGCCA +
Preference number: 5 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRIMSIF*AMEALP
Trigger: TGGCAGTGCTTCCATGGCCAAGAAGATGGACATTAT...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCATTCAGCTTGAGCCAGTaGTGTGACCTCTTGGCAATC +
Preference number: 5 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPFSLSQ*CDLLAI
Trigger: GATTGCCAAGAGGTCACACAACTGGCTCAAGCTGAA...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACCCTCCCACACAATGCTaGGGTCCAGCCAATGGTCTG +
Preference number: 5 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHPPTQC*GPANGL
Trigger: CAGACCATTGGCTGGACCCAAGCATTGTGTGGGAGG...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 90 bp GATTCCTCTCCTTCAGCGCCACCTTTGGAGGGGGTTCCTTCTCTCTaGTGCTGCTGGGTGTCTCCTTCTCTGGCTTCTTCGCTTTACCTT +
Preference number: 5 (lower is better)
Translates to: DSSPSAPPLEGVPSL*CCWVSPSLASSLYL
Trigger: AAGGTAAAGCGAAGAAGCCAGAGAAGGAGACACCCAGCAGCATCAGAGAGAAGGAACCCCCTCCAAAGGTGGCGCTGAAGGAGAGGAATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp TTCACAGCTCAGAACCTGGGCTACCTTCCTTCCTGTCCTCTTCACTaGAGAATCACTCTCGGGCACCACTTGATTCCTCTCCTTCAGCGC +
Preference number: 5 (lower is better)
Translates to: FTAQNLGYLPSCPLH*RITLGHHLIPLLQR
Trigger: GCGCTGAAGGAGAGGAATCAAGTGGTGCCCGAGAGTGATTCTCCAGTGAAGAGGACAGGAAGGAAGGTAGCCCAGGTTCTGAGCTGTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGTTAGCTGTTTTGGTTTaGTCCTCATTCTGCTCCTCA +
Preference number: 5 (lower is better)
Translates to: SNSAHVLATSTPGPGEQELAVLV*SSFCSS
Trigger: TGAGGAGCAGAATGAGGACAAAACCAAAACAGCTAA...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp TCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGAGCCTGACTCTTCTTGTTaGACTTCAGTTTTCACTGCT +
Preference number: 5 (lower is better)
Translates to: SNSAHVLATSTPGPGEQEPDSSC*TSVFTA
Trigger: AGCAGTGAAAACTGAAGTCAAACAAGAAGAGTCAGG...CTCCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGATGGAAGGATTATAATTaGCTGGATCCAGGGTTCCCT +
Preference number: 5 (lower is better)
Translates to: PPIQQCPCSRNLHPRPRRWKDYN*LDPGFP
Trigger: AGGGAACCCTGGATCCAGCAAATTATAATCCTTCCA...TCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGTGGAAGGATTATAATTaGCTGGATCCAGGGTTCCCT +
Preference number: 5 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRWKDYN*LDPGFP
Trigger: AGGGAACCCTGGATCCAGCAAATTATAATCCTTCCA...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CAACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAATAATGTCCATCTTCTaGGCCATGGAAGCACTGCCA +
Preference number: 5 (lower is better)
Translates to: QHHQSNSAHVLATSTPGPIMSIF*AMEALP
Trigger: TGGCAGTGCTTCCATGGCCAAGAAGATGGACATTAT...TGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACATGGGGGAGCTGCAGTaGAAGACAGGACTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHMGELQ*KTGLFS
Trigger: TGAGAACAGTCCTGTCTTCAACTGCAGCTCCCCCAT...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGAGAGCAGGTTAGCTGTTTTGGTTTaGTCCTCATTCTGCTCCTCA +
Preference number: 5 (lower is better)
Translates to: NPTVPMFSQPPPQAQESRLAVLV*SSFCSS
Trigger: TGAGGAGCAGAATGAGGACAAAACCAAAACAGCTAA...CCTGCTCTCCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGCCTGACTCTTCTTGTTaGACTTCAGTTTTCACTGCT +
Preference number: 5 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRPDSSC*TSVFTA
Trigger: AGCAGTGAAAACTGAAGTCAAACAAGAAGAGTCAGG...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 90 bp TCCTGCCTTACACACTGGAATGTTCTCTGTCTTTGTCAGGGTTACTaGCTCAGGGGACTTTGTGGGCTCAGAGGGGACTATGAGCTGGTC +
Preference number: 5 (lower is better)
Translates to: SCLTHWNVLCLCQGY*LRGLCGLRGDYELV
Trigger: GACCAGCTCATAGTCCCCTCTGAGCCCACAAAGTCCCCTGAGTCAGTAACCCTGACAAAGACAGAGAACATTCCAGTGTGTAAGGCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 90 bp CCGGTCCCAGGCCACAGCCTCAGTGTCCAGAATGAAAGATGTGACTaGGGGGTGTTTAATCTTGGGGATGCGGCTGATAATGTCAGGATA +
Preference number: 5 (lower is better)
Translates to: PVPGHSLSVQNERCD*GVFNLGDAADNVRI
Trigger: TATCCTGACATTATCAGCCGCATCCCCAAGATTAAACACCCCTCAGTCACATCTTTCATTCTGGACACTGAGGCTGTGGCCTGGGACCGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 90 bp AGAACTCAGCAATCTGCTCGGTGTCCTTGGTGTCCAAAGAGGTGGTaGAGACAAACTCACCCTCTGTCTCCACGAAGTTCTCACGGAGCA +
Preference number: 5 (lower is better)
Translates to: RTQQSARCPWCPKRW*RQTHPLSPRSSHGA
Trigger: TGCTCCGTGAGAACTTCGTGGAGACAGAGGGTGAGTTTGTCTTCACCACCTCTTTGGACACCAAGGACACCGAGCAGATTGCTGAGTTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 90 bp CCCTCACAGGAGTCCTTCACTGACTGCTCCAAGAACTCAGCAATCTaGTCGGTGTCCTTGGTGTCCAAAGAGGTGGTGAAGACAAACTCA +
Preference number: 5 (lower is better)
Translates to: PSQESFTDCSKNSAI*SVSLVSKEVVKTNS
Trigger: TGAGTTTGTCTTCACCACCTCTTTGGACACCAAGGACACCGAGCAGATTGCTGAGTTCTTGGAGCAGTCAGTGAAGGACTCCTGTGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 90 bp CGGTACAAAGAGGCAACCTGGTTACTGGTAGTGGCCTGCTCTGGCTaGTTGTCTTTACGGACACGAATGAACCGAGGAAAACGAAGAGAG +
Preference number: 5 (lower is better)
Translates to: RYKEATWLLVVACSG*LSLRTRMNRGKRRE
Trigger: CTCTCTTCGTTTTCCTCGGTTCATTCGTGTCCGTAAAGACAAGCAGCCAGAGCAGGCCACTACCAGTAACCAGGTTGCCTCTTTGTACCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp CTTCCGGTACAAAGAGGCAACCTGGTTACTGGTAGTGGCCTGCTCTaGCTGCTTGTCTTTACGGACACGAATGAACCGAGGAAAACGAAG +
Preference number: 5 (lower is better)
Translates to: LPVQRGNLVTGSGLL*LLVFTDTNEPRKTK
Trigger: CTTCGTTTTCCTCGGTTCATTCGTGTCCGTAAAGACAAGCAGCCAGAGCAGGCCACTACCAGTAACCAGGTTGCCTCTTTGTACCGGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACATGGGGGAGCTGCAGTaGAAGACAGGACTGTTCTCA +
Preference number: 5 (lower is better)
Translates to: KAFQPQDLTPVTPHTPINMGELQ*KTGLFS
Trigger: TGAGAACAGTCCTGTCTTCAACTGCAGCTCCCCCAT...GTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp ACACCACCAATCCAACAGTGCCCATGTTCTCGCAACCTCCACCCCAGGCCCAGGCTTTTCTTAGCTGTTTaGGTTTTGTCCTCATTCTGC +
Preference number: 5 (lower is better)
Translates to: TPPIQQCPCSRNLHPRPRLFLAV*VLSSFC
Trigger: GCAGAATGAGGACAAAACCAAAACAGCTAAGAAAAG...CCTGGGCCTGGGGTGGAGGTTGCGAGAACATGGGCACTGTTGGATTGGTGGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACGGATACTTTCCTGTGTaGTCTTCCTGGTTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHGYFPV*SSWFLL
Trigger: CAGCAGGAACCAGGAAGACAACACAGGAAAGTATCC...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 90 bp GGTCCAGAGTGTCACCCACACCGTCAAGGTAGTCCTTCTTCAGCTTaGGCCAGTTGTGTGACCTCTTGGCAATCTCATAAGTGGCATCAA +
Preference number: 5 (lower is better)
Translates to: GPECHPHRQGSPSSA*ASCVTSWQSHKWHQ
Trigger: TTGATGCCACTTATGAGATTGCCAAGAGGTCACACAACTGGCTCAAGCTGAAGAAGGACTACCTTGACGGTGTGGGTGACACTCTGGACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 90 bp GATGAGGTCAAAAGCATACAGACACACTTGCACCTGTATCTCCGATaGATCAACCTCCTTGCGCTTGCGCGTGGTGAGTACTTGGAATGG +
Preference number: 5 (lower is better)
Translates to: DEVKSIQTHLHLYLR*INLLALARGEYLEW
Trigger: CCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAGGTTGATGCATCGGAGATACAGGTGCAAGTGTGTCTGTATGCTTTTGACCTCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp TTTTGTCCTCATTCTGCTCCTCAAGAGTGTCTTGAATTGTCCGTTTaGGGAGCTGCTTCCGCGCAGTTCGACGCTTTGGGAATCCTGATG +
Preference number: 5 (lower is better)
Translates to: FCPHSAPQECLELSV*GAASAQFDALGILM
Trigger: CATCAGGATTCCCAAAGCGTCGAACTGCGCGGAAGCAGCTCCCCAAACGGACAATTCAAGACACTCTTGAGGAGCAGAATGAGGACAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACGGATACTTTCCTGTGTaGTCTTCCTGGTTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: KAFQPQDLTPVTPHTPINGYFPV*SSWFLL
Trigger: CAGCAGGAACCAGGAAGACAACACAGGAAAGTATCC...GTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACGAGTACTTGGAATGGTaGGATCTGCTTCTTTTCCCG +
Preference number: 5 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHEYLEW*DLLLFP
Trigger: CGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTC...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp ATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCACGAGTACTTGGAATGGTaGGATCTGCTTCTTTTCCCG +
Preference number: 5 (lower is better)
Translates to: IPAPGSHSCDSTHTNQHHEYLEW*DLLLFP
Trigger: CGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTC...GTGGTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp GAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACAGAGATCCCTTTTTCTTaGTCCACCAGGCCCCGTGCA +
Preference number: 5 (lower is better)
Translates to: EENKAFQPQDLTPVTPHTEIPFS*STRPRA
Trigger: TGCACGGGGCCTGGTGGACAAAGAAAAAGGGATCTC...TGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 90 bp AGCACAGGGATGATTCGATCCAGGTCAGGAACCTCACAGAAGGTCTaGTTCAAGATCATGCCTTGTTCTTCCAACCACATCTTTCTGGCC +
Preference number: 5 (lower is better)
Translates to: STGMIRSRSGTSQKV*FKIMPCSSNHIFLA
Trigger: GGCCAGAAAGATGTGGTTGGAAGAACAAGGCATGATCTTGAAGCAGACCTTCTGTGAGGTTCCTGACCTGGATCGAATCATCCCTGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp GAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACAGGATCCAGGGTTCCCTaGGTCTCTTCCTTCCTTAGA +
Preference number: 5 (lower is better)
Translates to: EENKAFQPQDLTPVTPHTGSRVP*VSSFLR
Trigger: TCTAAGGAAGGAAGAGACCAAGGGAACCCTGGATCC...TGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGCCTGGGCAACGGCCTaGAGGAGGACACCATCACCA +
Preference number: 5 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPAWATA*RRTPSP
Trigger: TGGTGATGGTGTCCTCCTCAAGGCCGTTGCCCAGGC...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCGCCGTGGGAAATTCTaGGCCAGGGGGTGTGAGGCT +
Preference number: 5 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLRRGKF*ARGCEA
Trigger: AGCCTCACACCCCCTGGCCAAGAATTTCCCACGGCG...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCTTCAAGATCATGCCTaGTTCTTCCAACCACATCTT +
Preference number: 5 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHLQDHA*FFQPHL
Trigger: AAGATGTGGTTGGAAGAACAAGGCATGATCTTGAAG...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 90 bp CCTGCTGAAGATCTTCACTTCTCCACCTTCCAGAACATGTATCTGTaGTCGCTGCCCATCGTATTTATATTCACAGGTGAAGTCGACCTC +
Preference number: 5 (lower is better)
Translates to: PAEDLHFSTFQNMYL*SLPIVFIFTGEVDL
Trigger: GAGGTCGACTTCACCTGTGAATATAAATACGATGGGCAGCGAGCACAGATACATGTTCTGGAAGGTGGAGAAGTGAAGATCTTCAGCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp GGGATGCGGCTGATAATGTCAGGATACTTTCCTGTGTTGTCTTCCTaGTTCCTGCTGAAGATCTTCACTTCTCCACCTTCCAGAACATGT +
Preference number: 5 (lower is better)
Translates to: GMRLIMSGYFPVLSS*FLLKIFTSPPSRTC
Trigger: ACATGTTCTGGAAGGTGGAGAAGTGAAGATCTTCAGCAGGAACCAGGAAGACAACACAGGAAAGTATCCTGACATTATCAGCCGCATCCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACCTTTTCTTAGCTGTTTaGGTTTTGTCCTCATTCTGC +
Preference number: 5 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHLFLAV*VLSSFC
Trigger: GCAGAATGAGGACAAAACCAAAACAGCTAAGAAAAG...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACCAATCAACACGCAATGTCACAGAATTaGGTGAAGACTCCAGAAATA +
Preference number: 5 (lower is better)
Translates to: SIPAPGSHSCDSTHTNQHAMSQN*VKTPEI
Trigger: TATTTCTGGAGTCTTCACCAAATTCTGTGACATTGC...GTGTTGATTGGTGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCAACCCCTGGGCTCAGCTaGCAGTGCTCTGGGAGACGT +
Preference number: 5 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISTPGLS*QCSGRR
Trigger: ACGTCTCCCAGAGCACTGCAAGCTGAGCCCAGGGGT...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCCTCCCACACAATGCTaGGGTCCAGCCAATGGTCTG +
Preference number: 5 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLPPTQC*GPANGL
Trigger: CAGACCATTGGCTGGACCCAAGCATTGTGTGGGAGG...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTGAGATCCCTTTTTCTTaGTCCACCAGGCCCCGTGCA +
Preference number: 5 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTEIPFS*STRPRA
Trigger: TGCACGGGGCCTGGTGGACAAAGAAAAAGGGATCTC...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTGACTCAGGGGACTTaGTGGGCTCAGAGGGGACTA +
Preference number: 5 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISLTQGT*WAQRGL
Trigger: TAGTCCCCTCTGAGCCCACAAAGTCCCCTGAGTCAG...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp GAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCCACACACACTTCAAGATCATGCCTaGTTCTTCCAACCACATCTT +
Preference number: 5 (lower is better)
Translates to: EENKAFQPQDLTPVTPHTLQDHA*FFQPHL
Trigger: AAGATGTGGTTGGAAGAACAAGGCATGATCTTGAAG...TGTGTGTGGAGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCATCAACCTCCTTGCGCTaGCGCGTGGTGAGTACTTGG +
Preference number: 5 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISSTSLR*RVVSTW
Trigger: CCAAGTACTCACCACGCGCAAGCGCAAGGAGGTTGA...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp GGCCATGTTTCCAGCAGGCATCTTCAATGGGATGATAGTTATTCTTaGAAGGATTATAATTTGCTGGATCCAGGGTTCCCTTGGTCTCTT +
Preference number: 5 (lower is better)
Translates to: GHVSSRHLQWDDSYS*KDYNLLDPGFPWSL
Trigger: AAGAGACCAAGGGAACCCTGGATCCAGCAAATTATAATCCTTCCAAGAATAACTATCATCCCATTGAAGATGCCTGCTGGAAACATGGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCGCGCGTGGTGAGTACTaGGAATGGTTGGATCTGCTT +
Preference number: 5 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLARGEY*EWLDLL
Trigger: AAGCAGATCCAACCATTCCAAGTACTCACCACGCGC...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 90 bp CGAGAAAAGGGACCTTCTGGCCATGTTTCCAGCAGGCATCTTCAATaGGATGATAGTTATTCTTGGAAGGATTATAATTTGCTGGATCCA +
Preference number: 5 (lower is better)
Translates to: REKGPSGHVSSRHLQ*DDSYSWKDYNLLDP
Trigger: TGGATCCAGCAAATTATAATCCTTCCAAGAATAACTATCATCCCATTGAAGATGCCTGCTGGAAACATGGCCAGAAGGTCCCTTTTCTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCTGCGAGGCTTTCTTTaGGGGTCTCTTCTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTLRGFL*GSLLLS
Trigger: AGAAAGAAGAAGAGACCCCAAAAGAAAGCCTCGCAG...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGCGAGGCTTTCTTTaGGGGTCTCTTCTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLLRGFL*GSLLLS
Trigger: AGAAAGAAGAAGAGACCCCAAAAGAAAGCCTCGCAG...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTGAATGTTCTCTGTCTTaGTCAGGGTTACTGACTCAG +
Preference number: 5 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTECSLS*SGLLTQ
Trigger: CTGAGTCAGTAACCCTGACAAAGACAGAGAACATTC...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCAGGATACTTTCCTGTGTaGTCTTCCTGGTTCCTGCTG +
Preference number: 5 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISGYFPV*SSWFLL
Trigger: CAGCAGGAACCAGGAAGACAACACAGGAAAGTATCC...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGAGTACTTGGAATGGTaGGATCTGCTTCTTTTCCCG +
Preference number: 5 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPEYLEW*DLLLFP
Trigger: CGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTC...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCAAGCATACAGACACACTaGCACCTGTATCTCCGATGC +
Preference number: 5 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISSIQTH*HLYLRC
Trigger: GCATCGGAGATACAGGTGCAAGTGTGTCTGTATGCT...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGAATGTTCTCTGTCTTaGTCAGGGTTACTGACTCAG +
Preference number: 5 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPECSLS*SGLLTQ
Trigger: CTGAGTCAGTAACCCTGACAAAGACAGAGAACATTC...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCTGGAAGGATTATAATTaGCTGGATCCAGGGTTCCCT +
Preference number: 5 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLWKDYN*LDPGFP
Trigger: AGGGAACCCTGGATCCAGCAAATTATAATCCTTCCA...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp TCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGTGACTCTTTTCTTAGCTGTTTaGGTTTTGTCCTCATTCTGC +
Preference number: 5 (lower is better)
Translates to: SFIEENKAFQPQDLTPVTLFLAV*VLSSFC
Trigger: GCAGAATGAGGACAAAACCAAAACAGCTAAGAAAAG...AGTCACAGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CATCTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCAGAATGTTCTCTGTCTTaGTCAGGGTTACTGACTCAG +
Preference number: 5 (lower is better)
Translates to: HLRSHLLKKIKHSSPRISECSLS*SGLLTQ
Trigger: CTGAGTCAGTAACCCTGACAAAGACAGAGAACATTC...TGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCCTGACTCTTCTTGTTaGACTTCAGTTTTCACTGCT +
Preference number: 5 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLPDSSC*TSVFTA
Trigger: AGCAGTGAAAACTGAAGTCAAACAAGAAGAGTCAGG...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTTCAAGATCATGCCTaGTTCTTCCAACCACATCTT +
Preference number: 5 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLLQDHA*FFQPHL
Trigger: AAGATGTGGTTGGAAGAACAAGGCATGATCTTGAAG...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp CTAAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCGCAATGTCACAGAATTaGGTGAAGACTCCAGAAATA +
Preference number: 5 (lower is better)
Translates to: LRSHLLKKIKHSSPRISLAMSQN*VKTPEI
Trigger: TATTTCTGGAGTCTTCACCAAATTCTGTGACATTGC...GAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTTAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS-3UTR CAA 90 bp AAGAAGTCATTTATTGAAGAAAATAAAGCATTCCAGCCCCAGGATCTCACTCCTGCAATGTCACAGAATTaGGTGAAGACTCCAGAAATA +
Preference number: 5 (lower is better)
Translates to: KKSFIEENKAFQPQDLTPAMSQN*VKTPEI
Trigger: TATTTCTGGAGTCTTCACCAAATTCTGTGACATTGC...AGGAGTGAGATCCTGGGGCTGGAATGCTTTATTTTCTTCAATAAATGACTTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 72 bp AGGCTCACAGCCTGGGCAAGAGCAGCCAGTACCGACTaGTCAGCTAGGCCAAGGCGCAGCCGCCCGCTTAGG +
Preference number: 6 (lower is better)
Translates to: RLTAWARAASTD*SARPRRSRPLR
Trigger: CCTAAGCGGGCGGCTGCGCCTTGGCCTAGCTGAGCAGTCGGTACTGGCTGCTCTTGCCCAGGCTGTGAGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 72 bp CCACCACCGCCGTGGGAAATTCTTGGCCAGGGGGTGTaGGGCTCACAGCCTGGGCAAGAGCAGCCAGTACCG +
Preference number: 6 (lower is better)
Translates to: PPPPWEILGQGV*GSQPGQEQPVP
Trigger: CGGTACTGGCTGCTCTTGCCCAGGCTGTGAGCCTCACACCCCCTGGCCAAGAATTTCCCACGGCGGTGGTGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 72 bp TCACCCTCTGTCTCCACGAAGTTCTCACGGAGCAGCTaGCGGCGTCGAGACAGGGGCTGGCGAACCAGGGAC +
Preference number: 6 (lower is better)
Translates to: SPSVSTKFSRSS*RRRDRGWRTRD
Trigger: GTCCCTGGTTCGCCAGCCCCTGTCTCGACGCCGGCAGCTGCTCCGTGAGAACTTCGTGGAGACAGAGGGTGA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp GGCGCAGCCGCCCGCTTAGGGACCTGGCAATGTACCTaGCTTCTGAGTGGCGGCAGGCAACAAAAAGGCCCT +
Preference number: 6 (lower is better)
Translates to: GAAARLGTWQCT*LLSGGRQQKGP
Trigger: AGGGCCTTTTTGTTGCCTGCCGCCACTCAGAAGCCAGGTACATTGCCAGGTCCCTAAGCGGGCGGCTGCGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp GGGCGTGGGGTAGGCAATACCAGGGCCTGCAGGCTCTaGTGGTGTTCCTCCAGCTCCTCATCGCTGAATCCA +
Preference number: 6 (lower is better)
Translates to: GRGVGNTRACRL*WCSSSSSSLNP
Trigger: TGGATTCAGCGATGAGGAGCTGGAGGAACACCACCAGAGCCTGCAGGCCCTGGTATTGCCTACCCCACGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 72 bp TGTGTCAGGGCTGGGAGGAGAGCTCTGTTCAGAGTCTaGCACAGGCTTCTGGACTTTGGGGGTGCCAGGGGC +
Preference number: 6 (lower is better)
Translates to: CVRAGRRALFRV*HRLLDFGGARG
Trigger: GCCCCTGGCACCCCCAAAGTCCAGAAGCCTGTGTCAGACTCTGAACAGAGCTCTCCTCCCAGCCCTGACACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 72 bp ACTCCAGCTGACGACCTGTGGCCTGGGCAACGGCCTTaGGGAGGACACCATCACCAACACCCAGCTCTAGTC +
Preference number: 6 (lower is better)
Translates to: TPADDLWPGQRP*GGHHHQHPALV
Trigger: GACTAGAGCTGGGTGTTGGTGATGGTGTCCTCCTCAAGGCCGTTGCCCAGGCCACAGGTCGTCAGCTGGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp GGAAATTCTTGGCCAGGGGGTGTGAGGCTCACAGCCTaGGCAAGAGCAGCCAGTACCGACTGCTCAGCTAGG +
Preference number: 6 (lower is better)
Translates to: GNSWPGGVRLTA*ARAASTDCSAR
Trigger: CCTAGCTGAGCAGTCGGTACTGGCTGCTCTTGCCCAGGCTGTGAGCCTCACACCCCCTGGCCAAGAATTTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp CACCTCCCACACAATGCTTGGGTCCAGCCAATGGTCTaGGGCCACTGCCCCATCAATCCTCACATAGGGGCG +
Preference number: 6 (lower is better)
Translates to: HLPHNAWVQPMV*GHCPINPHIGA
Trigger: CGCCCCTATGTGAGGATTGATGGGGCAGTGGCCCCAGACCATTGGCTGGACCCAAGCATTGTGTGGGAGGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp GACCTCACTGACACCCCGAGTGGGATGAGCCAGCATTaGTTTAAGAGGGACCCCTGGGCTCAGCTTGCAGTG +
Preference number: 6 (lower is better)
Translates to: DLTDTPSGMSQH*FKRDPWAQLAV
Trigger: CACTGCAAGCTGAGCCCAGGGGTCCCTCTTAAACCAATGCTGGCTCATCCCACTCGGGGTGTCAGTGAGGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 72 bp TCTGGAGGGGACAGGGCCACCACGGAGCGCAGCAGGTaGCTCAATGTCTCCACCATCTTGAGCCTAGCAGAA +
Preference number: 6 (lower is better)
Translates to: SGGDRATTERSR*LNVSTILSLAE
Trigger: TTCTGCTAGGCTCAAGATGGTGGAGACATTGAGCAACCTGCTGCGCTCCGTGGTGGCCCTGTCCCCTCCAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 72 bp GAGCTGCTTCCGCGCAGTTCGACGCTTTGGGAATCCTaGTGGGGAGATGTCCATGGGGGAGCTGCAGTTGAA +
Preference number: 6 (lower is better)
Translates to: ELLPRSSTLWES*WGDVHGGAAVE
Trigger: TTCAACTGCAGCTCCCCCATGGACATCTCCCCATCAGGATTCCCAAAGCGTCGAACTGCGCGGAAGCAGCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 72 bp CGCTTGCGCGTGGTGAGTACTTGGAATGGTTGGATCTaGTTCTTTTCCCGGTCCCAGGCCACAGCCTCAGTG +
Preference number: 6 (lower is better)
Translates to: RLRVVSTWNGWI*FFSRSQATASV
Trigger: CACTGAGGCTGTGGCCTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 72 bp ACAGGGAAAGATCAGCACACTTCACCTCCCACACAATaGTTGGGTCCAGCCAATGGTCTGGGGCCACTGCCC +
Preference number: 6 (lower is better)
Translates to: TGKDQHTSPPTQ*LGPANGLGPLP
Trigger: GGGCAGTGGCCCCAGACCATTGGCTGGACCCAAGCATTGTGTGGGAGGTGAAGTGTGCTGATCTTTCCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp GGAGGAGAGCTCTGTTCAGAGTCTGACACAGGCTTCTaGACTTTGGGGGTGCCAGGGGCTTCATCTTCGTCC +
Preference number: 6 (lower is better)
Translates to: GGELCSESDTGF*TLGVPGASSSS
Trigger: GGACGAAGATGAAGCCCCTGGCACCCCCAAAGTCCAGAAGCCTGTGTCAGACTCTGAACAGAGCTCTCCTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp AGTGGGATGAGCCAGCATTGGTTTAAGAGGGACCCCTaGGCTCAGCTTGCAGTGCTCTGGGAGACGTTCCAG +
Preference number: 6 (lower is better)
Translates to: SGMSQHWFKRDP*AQLAVLWETFQ
Trigger: CTGGAACGTCTCCCAGAGCACTGCAAGCTGAGCCCAGGGGTCCCTCTTAAACCAATGCTGGCTCATCCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp TCCTTGCGCTTGCGCGTGGTGAGTACTTGGAATGGTTaGATCTGCTTCTTTTCCCGGTCCCAGGCCACAGCC +
Preference number: 6 (lower is better)
Translates to: SLRLRVVSTWNG*ICFFSRSQATA
Trigger: GGCTGTGGCCTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 72 bp CTCCTTGCGCTTGCGCGTGGTGAGTACTTGGAATGGTaGGATCTGCTTCTTTTCCCGGTCCCAGGCCACAGC +
Preference number: 6 (lower is better)
Translates to: LLALARGEYLEW*DLLLFPVPGHS
Trigger: GCTGTGGCCTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 90 bp TGCATCAACCTCCTTGCGCTTGCGCGTGGTGAGTACTTGGAATGGTaGGATCTGCTTCTTTTCCCGGTCCCAGGCCACAGCCTCAGTGTC +
Preference number: 6 (lower is better)
Translates to: CINLLALARGEYLEW*DLLLFPVPGHSLSV
Trigger: GACACTGAGGCTGTGGCCTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAGGTTGATGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp AACCTCCTTGCGCTTGCGCGTGGTGAGTACTTGGAATaGTTGGATCTGCTTCTTTTCCCGGTCCCAGGCCAC +
Preference number: 6 (lower is better)
Translates to: NLLALARGEYLE*LDLLLFPVPGH
Trigger: GTGGCCTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 90 bp CTTCCTTCCTGTCCTCTTCACTGGAGAATCACTCTCGGGCACCACTaGATTCCTCTCCTTCAGCGCCACCTTTGGAGGGGGTTCCTTCTC +
Preference number: 6 (lower is better)
Translates to: LPSCPLHWRITLGHH*IPLLQRHLWRGFLL
Trigger: GAGAAGGAACCCCCTCCAAAGGTGGCGCTGAAGGAGAGGAATCAAGTGGTGCCCGAGAGTGATTCTCCAGTGAAGAGGACAGGAAGGAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 90 bp TATCTCCGATGCATCAACCTCCTTGCGCTTGCGCGTGGTGAGTACTaGGAATGGTTGGATCTGCTTCTTTTCCCGGTCCCAGGCCACAGC +
Preference number: 6 (lower is better)
Translates to: YLRCINLLALARGEY*EWLDLLLFPVPGHS
Trigger: GCTGTGGCCTGGGACCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAGGTTGATGCATCGGAGATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp CCGCTTAGGGACCTGGCAATGTACCTGGCTTCTGAGTaGCGGCAGGCAACAAAAAGGCCCTTGATAATGTCC +
Preference number: 6 (lower is better)
Translates to: PLRDLAMYLASE*RQATKRPLIMS
Trigger: GGACATTATCAAGGGCCTTTTTGTTGCCTGCCGCCACTCAGAAGCCAGGTACATTGCCAGGTCCCTAAGCGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 72 bp TTCACCATCAGGCCCTCACAGGAGTCCTTCACTGACTaGTCCAAGAACTCAGCAATCTGCTCGGTGTCCTTG +
Preference number: 6 (lower is better)
Translates to: FTIRPSQESFTD*SKNSAICSVSL
Trigger: CAAGGACACCGAGCAGATTGCTGAGTTCTTGGAGCAGTCAGTGAAGGACTCCTGTGAGGGCCTGATGGTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp CAGAACCTGGGCTACCTTCCTTCCTGTCCTCTTCACTaGAGAATCACTCTCGGGCACCACTTGATTCCTCTC +
Preference number: 6 (lower is better)
Translates to: QNLGYLPSCPLH*RITLGHHLIPL
Trigger: GAGAGGAATCAAGTGGTGCCCGAGAGTGATTCTCCAGTGAAGAGGACAGGAAGGAAGGTAGCCCAGGTTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp GCTTCATCTTCGTCCTCCCCTTCACAGCTCAGAACCTaGGCTACCTTCCTTCCTGTCCTCTTCACTGGAGAA +
Preference number: 6 (lower is better)
Translates to: ASSSSSPSQLRT*ATFLPVLFTGE
Trigger: TTCTCCAGTGAAGAGGACAGGAAGGAAGGTAGCCCAGGTTCTGAGCTGTGAAGGGGAGGACGAAGATGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp CATTCTGCTCCTCAAGAGTGTCTTGAATTGTCCGTTTaGGGAGCTGCTTCCGCGCAGTTCGACGCTTTGGGA +
Preference number: 6 (lower is better)
Translates to: HSAPQECLELSV*GAASAQFDALG
Trigger: TCCCAAAGCGTCGAACTGCGCGGAAGCAGCTCCCCAAACGGACAATTCAAGACACTCTTGAGGAGCAGAATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp CAAAGAGGCAACCTGGTTACTGGTAGTGGCCTGCTCTaGCTGCTTGTCTTTACGGACACGAATGAACCGAGG +
Preference number: 6 (lower is better)
Translates to: QRGNLVTGSGLL*LLVFTDTNEPR
Trigger: CCTCGGTTCATTCGTGTCCGTAAAGACAAGCAGCCAGAGCAGGCCACTACCAGTAACCAGGTTGCCTCTTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 72 bp TGCATCAACCTCCTTGCGCTTGCGCGTGGTGAGTACTaGGAATGGTTGGATCTGCTTCTTTTCCCGGTCCCA +
Preference number: 6 (lower is better)
Translates to: CINLLALARGEY*EWLDLLLFPVP
Trigger: TGGGACCGGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAGGTTGATGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 72 bp TGCACCTGTATCTCCGATGCATCAACCTCCTTGCGCTaGCGCGTGGTGAGTACTTGGAATGGTTGGATCTGC +
Preference number: 6 (lower is better)
Translates to: CTCISDASTSLR*RVVSTWNGWIC
Trigger: GCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAGGTTGATGCATCGGAGATACAGGTGCA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 90 bp GCAATGTACCTGGCTTCTGAGTGGCGGCAGGCAACAAAAAGGCCCTaGATAATGTCCATCTTCTTGGCCATGGAAGCACTGCCAGTGAGC +
Preference number: 6 (lower is better)
Translates to: AMYLASEWRQATKRP*IMSIFLAMEALPVS
Trigger: GCTCACTGGCAGTGCTTCCATGGCCAAGAAGATGGACATTATCAAGGGCCTTTTTGTTGCCTGCCGCCACTCAGAAGCCAGGTACATTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 72 bp TCTCCGATGCATCAACCTCCTTGCGCTTGCGCGTGGTaGGTACTTGGAATGGTTGGATCTGCTTCTTTTCCC +
Preference number: 6 (lower is better)
Translates to: SPMHQPPCACAW*VLGMVGSASFP
Trigger: GGGAAAAGAAGCAGATCCAACCATTCCAAGTACTCACCACGCGCAAGCGCAAGGAGGTTGATGCATCGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 72 bp GAGGCAACCTGGTTACTGGTAGTGGCCTGCTCTGGCTaGTTGTCTTTACGGACACGAATGAACCGAGGAAAA +
Preference number: 6 (lower is better)
Translates to: EATWLLVVACSG*LSLRTRMNRGK
Trigger: TTTTCCTCGGTTCATTCGTGTCCGTAAAGACAAGCAGCCAGAGCAGGCCACTACCAGTAACCAGGTTGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 72 bp CGGTACAAAGAGGCAACCTGGTTACTGGTAGTGGCCTaGTCTGGCTGCTTGTCTTTACGGACACGAATGAAC +
Preference number: 6 (lower is better)
Translates to: RYKEATWLLVVA*SGCLSLRTRMN
Trigger: GTTCATTCGTGTCCGTAAAGACAAGCAGCCAGAGCAGGCCACTACCAGTAACCAGGTTGCCTCTTTGTACCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 72 bp CAGGCAACAAAAAGGCCCTTGATAATGTCCATCTTCTaGGCCATGGAAGCACTGCCAGTGAGCCGGGCAATG +
Preference number: 6 (lower is better)
Translates to: QATKRPLIMSIF*AMEALPVSRAM
Trigger: CATTGCCCGGCTCACTGGCAGTGCTTCCATGGCCAAGAAGATGGACATTATCAAGGGCCTTTTTGTTGCCTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 72 bp GCAACCTGGTTACTGGTAGTGGCCTGCTCTGGCTGCTaGTCTTTACGGACACGAATGAACCGAGGAAAACGA +
Preference number: 6 (lower is better)
Translates to: ATWLLVVACSGC*SLRTRMNRGKR
Trigger: TCGTTTTCCTCGGTTCATTCGTGTCCGTAAAGACAAGCAGCCAGAGCAGGCCACTACCAGTAACCAGGTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 90 bp TTGGCCATGGAAGCACTGCCAGTGAGCCGGGCAATGTCACAGAATTaGGTGAAGACTCCAGAAATAGTAAGTGGAGGTGGAGGCAGCATG +
Preference number: 6 (lower is better)
Translates to: LAMEALPVSRAMSQN*VKTPEIVSGGGGSM
Trigger: CATGCTGCCTCCACCTCCACTTACTATTTCTGGAGTCTTCACCAAATTCTGTGACATTGCCCGGCTCACTGGCAGTGCTTCCATGGCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 72 bp AAAAGCATACAGACACACTTGCACCTGTATCTCCGATaGATCAACCTCCTTGCGCTTGCGCGTGGTGAGTAC +
Preference number: 6 (lower is better)
Translates to: KSIQTHLHLYLR*INLLALARGEY
Trigger: GTACTCACCACGCGCAAGCGCAAGGAGGTTGATGCATCGGAGATACAGGTGCAAGTGTGTCTGTATGCTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 72 bp TTTTGTCCTCATTCTGCTCCTCAAGAGTGTCTTGAATaGTCCGTTTGGGGAGCTGCTTCCGCGCAGTTCGAC +
Preference number: 6 (lower is better)
Translates to: FCPHSAPQECLE*SVWGAASAQFD
Trigger: GTCGAACTGCGCGGAAGCAGCTCCCCAAACGGACAATTCAAGACACTCTTGAGGAGCAGAATGAGGACAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 90 bp TACAAAGAGGCAACCTGGTTACTGGTAGTGGCCTGCTCTGGCTGCTaGTCTTTACGGACACGAATGAACCGAGGAAAACGAAGAGAGATC +
Preference number: 6 (lower is better)
Translates to: YKEATWLLVVACSGC*SLRTRMNRGKRREI
Trigger: GATCTCTCTTCGTTTTCCTCGGTTCATTCGTGTCCGTAAAGACAAGCAGCCAGAGCAGGCCACTACCAGTAACCAGGTTGCCTCTTTGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 72 bp TTGGTTTTGTCCTCATTCTGCTCCTCAAGAGTGTCTTaGATTGTCCGTTTGGGGAGCTGCTTCCGCGCAGTT +
Preference number: 6 (lower is better)
Translates to: LVLSSFCSSRVS*IVRLGSCFRAV
Trigger: AACTGCGCGGAAGCAGCTCCCCAAACGGACAATTCAAGACACTCTTGAGGAGCAGAATGAGGACAAAACCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 72 bp ACACACTGGAATGTTCTCTGTCTTTGTCAGGGTTACTaGCTCAGGGGACTTTGTGGGCTCAGAGGGGACTAT +
Preference number: 6 (lower is better)
Translates to: THWNVLCLCQGY*LRGLCGLRGDY
Trigger: ATAGTCCCCTCTGAGCCCACAAAGTCCCCTGAGTCAGTAACCCTGACAAAGACAGAGAACATTCCAGTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 72 bp TGTCACCCACACCGTCAAGGTAGTCCTTCTTCAGCTTaGGCCAGTTGTGTGACCTCTTGGCAATCTCATAAG +
Preference number: 6 (lower is better)
Translates to: CHPHRQGSPSSA*ASCVTSWQSHK
Trigger: CTTATGAGATTGCCAAGAGGTCACACAACTGGCTCAAGCTGAAGAAGGACTACCTTGACGGTGTGGGTGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 72 bp TTTGGTTTTGTCCTCATTCTGCTCCTCAAGAGTGTCTaGAATTGTCCGTTTGGGGAGCTGCTTCCGCGCAGT +
Preference number: 6 (lower is better)
Translates to: FGFVLILLLKSV*NCPFGELLPRS
Trigger: ACTGCGCGGAAGCAGCTCCCCAAACGGACAATTCAAGACACTCTTGAGGAGCAGAATGAGGACAAAACCAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000098814.13
ENSMUST00000146998.9
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 72 bp GAAGCACTGCCAGTGAGCCGGGCAATGTCACAGAATTaGGTGAAGACTCCAGAAATAGTAAGTGGAGGTGGA +
Preference number: 6 (lower is better)
Translates to: EALPVSRAMSQN*VKTPEIVSGGG
Trigger: TCCACCTCCACTTACTATTTCTGGAGTCTTCACCAAATTCTGTGACATTGCCCGGCTCACTGGCAGTGCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS TCA 72 bp TCTGTGCTCGCTGCCCATCGTATTTATATTCACAGGTaGAGTCGACCTCCTCAAAGCGTTTTAGGACCTCAC +
Preference number: 6 (lower is better)
Translates to: SVLAAHRIYIHR*SRPPQSVLGPH
Trigger: GTGAGGTCCTAAAACGCTTTGAGGAGGTCGACTTCACCTGTGAATATAAATACGATGGGCAGCGAGCACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 72 bp AGGAACCTCACAGAAGGTCTGCTTCAAGATCATGCCTaGTTCTTCCAACCACATCTTTCTGGCCTCTGCTGT +
Preference number: 6 (lower is better)
Translates to: RNLTEGLLQDHA*FFQPHLSGLCC
Trigger: ACAGCAGAGGCCAGAAAGATGTGGTTGGAAGAACAAGGCATGATCTTGAAGCAGACCTTCTGTGAGGTTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 90 bp GCCTCAGTGTCCAGAATGAAAGATGTGACTGAGGGGTGTTTAATCTaGGGGATGCGGCTGATAATGTCAGGATACTTTCCTGTGTTGTCT +
Preference number: 6 (lower is better)
Translates to: ASVSRMKDVTEGCLI*GMRLIMSGYFPVLS
Trigger: AGACAACACAGGAAAGTATCCTGACATTATCAGCCGCATCCCCAAGATTAAACACCCCTCAGTCACATCTTTCATTCTGGACACTGAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 72 bp ATGATTCGATCCAGGTCAGGAACCTCACAGAAGGTCTaGTTCAAGATCATGCCTTGTTCTTCCAACCACATC +
Preference number: 6 (lower is better)
Translates to: MIRSRSGTSQKV*FKIMPCSSNHI
Trigger: GATGTGGTTGGAAGAACAAGGCATGATCTTGAAGCAGACCTTCTGTGAGGTTCCTGACCTGGATCGAATCAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 72 bp ACTTCTCCACCTTCCAGAACATGTATCTGTGCTCGCTaGCCATCGTATTTATATTCACAGGTGAAGTCGACC +
Preference number: 6 (lower is better)
Translates to: TSPPSRTCICAR*PSYLYSQVKST
Trigger: GGTCGACTTCACCTGTGAATATAAATACGATGGGCAGCGAGCACAGATACATGTTCTGGAAGGTGGAGAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp TGGAAGGATTATAATTTGCTGGATCCAGGGTTCCCTTaGTCTCTTCCTTCCTTAGAGTGCCTGACTCTTCTT +
Preference number: 6 (lower is better)
Translates to: WKDYNLLDPGFP*SLPSLECLTLL
Trigger: AAGAAGAGTCAGGCACTCTAAGGAAGGAAGAGACCAAGGGAACCCTGGATCCAGCAAATTATAATCCTTCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp CTGATAATGTCAGGATACTTTCCTGTGTTGTCTTCCTaGTTCCTGCTGAAGATCTTCACTTCTCCACCTTCC +
Preference number: 6 (lower is better)
Translates to: LIMSGYFPVLSS*FLLKIFTSPPS
Trigger: GGAAGGTGGAGAAGTGAAGATCTTCAGCAGGAACCAGGAAGACAACACAGGAAAGTATCCTGACATTATCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 72 bp GATCTTCACTTCTCCACCTTCCAGAACATGTATCTGTaGTCGCTGCCCATCGTATTTATATTCACAGGTGAA +
Preference number: 6 (lower is better)
Translates to: DLHFSTFQNMYL*SLPIVFIFTGE
Trigger: TTCACCTGTGAATATAAATACGATGGGCAGCGAGCACAGATACATGTTCTGGAAGGTGGAGAAGTGAAGATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 72 bp TCCAGAATGAAAGATGTGACTGAGGGGTGTTTAATCTaGGGGATGCGGCTGATAATGTCAGGATACTTTCCT +
Preference number: 6 (lower is better)
Translates to: SRMKDVTEGCLI*GMRLIMSGYFP
Trigger: AGGAAAGTATCCTGACATTATCAGCCGCATCCCCAAGATTAAACACCCCTCAGTCACATCTTTCATTCTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CAA 90 bp AGGCATCTTCAATGGGATGATAGTTATTCTTGGAAGGATTATAATTaGCTGGATCCAGGGTTCCCTTGGTCTCTTCCTTCCTTAGAGTGC +
Preference number: 6 (lower is better)
Translates to: RHLQWDDSYSWKDYN*LDPGFPWSLPSLEC
Trigger: GCACTCTAAGGAAGGAAGAGACCAAGGGAACCCTGGATCCAGCAAATTATAATCCTTCCAAGAATAACTATCATCCCATTGAAGATGCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS CCA 72 bp TCCAGCAGGCATCTTCAATGGGATGATAGTTATTCTTaGAAGGATTATAATTTGCTGGATCCAGGGTTCCCT +
Preference number: 6 (lower is better)
Translates to: SSRHLQWDDSYS*KDYNLLDPGFP
Trigger: AGGGAACCCTGGATCCAGCAAATTATAATCCTTCCAAGAATAACTATCATCCCATTGAAGATGCCTGCTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10
CDS GCA 72 bp AATGGGATGATAGTTATTCTTGGAAGGATTATAATTTaGTGGATCCAGGGTTCCCTTGGTCTCTTCCTTCCT +
Preference number: 6 (lower is better)
Translates to: NGMIVILGRIII*WIQGSLGLFLP
Trigger: AGGAAGGAAGAGACCAAGGGAACCCTGGATCCAGCAAATTATAATCCTTCCAAGAATAACTATCATCCCATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098814.13
ENSMUST00000165964.10
ENSMUST00000177588.10